Drosophila bipectinata

Overview

As part of the Drosophila modENCODE project, the Baylor College of Medicine is studying the comparative genomics of eight additional species of Drosophila: biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii.

Please cite the following publication when using the D. bipectinata genome and annotations:
Chen, Z. X., Sturgill, D., Qu, J., et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research, 2014, 24(7), 1209-1223. doi: 10.1101/gr.159384.113


Image Credit: Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Organism Image
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Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS58,087
mRNA14,281
Gene14,281
Contig N50
149052
Scaffold N50
657776
Number Of Genes
14281
Image Credit
Nicolas Gompel. <a href="http://gompel.org/wp-content/gallery/drosophilidae/Drosophila-Sophophora-bipectinata-NCBSisoFline01_plate_small.jpg">View Source.</a> <a href="https://creativecommons.org/licenses/by-nc-sa/3.0/">CC BY-NC-SA 3.0</a>

Assembly Information

Analysis Name Drosophila bipectinata genome assembly Dbip_2.0 (GCF_000236285.1)
Software Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0 (NA)
Source SAMN00714473
Date performed 2013-03-04
Materials & Methods Chen, Z.X., Sturgill, D., Qu, J., Jiang, H., Park, S., Boley, N., Suzuki, A.M., Fletcher, A.R., Plachetzki, D.C., FitzGerald, P.C., et al. (2014). Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research 24, 1209-1223.

Statistics

Assembly Metrics
Contig N50 149052
Scaffold N50 657776
GC Content 40.36