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Frankliniella occidentalis Annotations

Analysis Name BCM annotation of the Frankliniella occidentalis assembly using Maker and additional analyses
Software MAKER (2)
Source FOCC.Models.gff3 (0.5.3)
Date performed 2014-02-06
Materials & Methods

NOTE: This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses before the official gene set is released. We do not intend to maintain gene identifiers from this gene set.

RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the new genomes.


Analysis Name Frankliniella occidentalis annotations fraocc_OGSv1.0
Software GFF3toolkit (1.4.3)
Source BCM annotation of the Frankliniella occidentalis assembly using Maker and additional analyses
Date performed 2018-10-11
Materials & Methods

The Frankliniella occidentalis genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Frankliniella occidentalis research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The OGS is an integration of automatic gene predictions from Maker with manual annotations by the research community (via the Apollo manual annotation software). The GFF3toolkit software was used for QC and Merging (https://github.com/NAL-i5K/GFF3toolkit/). 


Analysis Name Frankliniella occidentalis annotations fraocc_OGSv1.1
Software Coordinates conversion (3.0.0)
Source Frankliniella occidentalis annotations fraocc_OGSv1.0
Date performed 2019-12-06
Materials & Methods The Frankliniella occidentalis Official Gene Set fraocc_OGSv1.1 is an update of OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029). OGSv1.0 is an integration of automatic gene predictions from the Baylor College of Medicine's i5k pilot project, with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). OGSv1.1 was updated from OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029) to the coordinates of genome assembly GCA_000697945.4 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000697945.4) using https://github.com/NAL-i5K/coordinates_conversion/.