The following files were retrieved from NCBI
https://www.ncbi.nlm.nih.gov/assembly/halhal_OGSv1.2

Information about this dataset can be found here: https://i5k.nal.usda.gov/bio_data/836500

Information about the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748
Instruction for running the functional annotation pipeline can be found here: https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html

The file halhal_OGSv1.2_pep.fa was post-processed with agbase/goanna:2.2 (https://hub.docker.com/repository/docker/agbase/goanna) docker container to generate GO functional annotation.
GOanna was run with these options: -a,invertebrates; -f,3; -g,70; -k,9; -q,70; -r,1.2.
The resulting files are:

halhal_OGSv1.2.asn
halhal_OGSv1.2.gaf.tsv
halhal_OGSv1.2.html
halhal_OGSv1.2.tsv

The file halhal_OGSv1.2_pep.fa was post-processed with agbase/interproscan:5.45-80_2 (https://hub.docker.com/repository/docker/agbase/interproscan) docker container to generate GO and pathway functional annotation. The resulting files are:

halhal_OGSv1.2_acc_go_counts.txt
halhal_OGSv1.2_acc_interpro_counts.txt
halhal_OGSv1.2_acc_pathway_counts.txt
halhal_OGSv1.2.err
halhal_OGSv1.2_gaf.txt
halhal_OGSv1.2.gff3
halhal_OGSv1.2_go_counts.txt
halhal_OGSv1.2_interpro_counts.txt
halhal_OGSv1.2.json
halhal_OGSv1.2_pathway_counts.txt
halhal_OGSv1.2.tsv
halhal_OGSv1.2.xml
halhal_OGSv1.2.html.tar.gz
halhal_OGSv1.2.svg.tar.gz


The file halhal_OGSv1.2_pep.fa was post-processed with agbase/kobas:3.0.3_0 (https://hub.docker.com/repository/docker/agbase/kobas) docker container to generate pathway functional annotation. The resulting files are:

halhal_OGSv1.2_KOBAS_acc_pathways.tsv
halhal_OGSv1.2_KOBAS_pathways_acc.tsv
halhal_OGSv1.2_KOBAS.txt


The GAF output files from InterProScan and GOanna were combined into a single GAF file using agbase/combine_gafs:1.0 (https://hub.docker.com/repository/docker/agbase/combine_gafs)

halhal_OGSv1.2_complete.gaf.tsv