Protein

## Lalb_01720

Length
320 amino acids

### Protein family membership

- Cdk-activating kinase assembly factor MAT1/Tfb3 (IPR004575)

### Homologous superfamilies

1. Homologous superfamily
   1 - 65
   - Zinc finger, RING/FYVE/PHD-type (IPR013083)

1 50 100 150 200 250 320

### Domains and repeats

1. Domain
   3 - 50
   - Zinc finger, RING-type (IPR001841)
   53 - 252
   - Cdk-activating kinase assembly factor MAT1, centre (IPR015877)

1 50 100 150 200 250 320

### Detailed signature matches

1. IPR013083
   Zinc finger, RING/FYVE/PHD-type
   1. G3DSA:3.30.40.10 (Z...)
      1 - 65
      GENE3D
      G3DSA:3.30.40.10 (Zinc/RING finger domain)
2. IPR004575
   Cdk-activating kinase assembly factor MAT1/Tfb3
   1. PIRSF003338 (MAT1)
      1 - 314
      PIRSF
      PIRSF003338 (MAT1)
   2. TIGR00570
      1 - 310
      TIGRFAMs
      TIGR00570 (TIGR00570)
   3. PTHR12683:SF13 (CDK...)
      1 - 307
      PANTHER
      PTHR12683:SF13 (CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1)
3. IPR001841
   Zinc finger, RING-type
   1. SM00184 (ring_2)
      6 - 49
      SMART
      SM00184 (ring_2)
   2. PF17121 (zf-C3HC4_5)
      3 - 48
      Pfam
      PF17121 (zf-C3HC4_5)
   3. PS50089 (ZF_RING_2)
      6 - 50
      PROSITE profiles
      PS50089 (ZF_RING_2)
4. IPR015877
   Cdk-activating kinase assembly factor MAT1, centre
   1. PF06391 (MAT1)
      53 - 252
      Pfam
      PF06391 (MAT1)
5. IPR017907
   Zinc finger, RING-type, conserved site
   1. PS00518 (ZF_RING_1)
      26 - 35
      PROSITE patterns
      PS00518 (ZF_RING_1)

no IPR
Unintegrated signatures

1. PTHR12683 (FAMILY N...)
   1 - 307
   PANTHER
   PTHR12683 (FAMILY NOT NAMED)
2. SSF57850 (RING/U-box)
   2 - 61
   SUPERFAMILY
   SSF57850 (RING/U-box)
3. cd16517 (RING-HC_MAT1)
   6 - 54
   CDD
   cd16517 (RING-HC_MAT1)

### Other features

1. Coil
   148 - 186
   COILS
   Coil (Coil)

### Residue annotation

1. Zn binding site cd...
   6C
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)
   9C
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)
   26C
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)
   28H
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)
   31C
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)
   34C
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)
   46C
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)
   49C
   Zn binding site
   6C, 9C, 26C, 28H, 31C, 34C, 46C, 49C
   CDD
   cd16517 (RING-HC_MAT1)

### GO term prediction

#### Biological Process

GO:0006289 nucleotide-excision repair
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity

#### Molecular Function

GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity

#### Cellular Component

GO:0005675 transcription factor TFIIH holo complex

Generated with InterProScan 5.45-80.0