The following files were retrieved from NCBI on 08/30/2018:
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/095/GCF_000188095.2_BIMP_2.1/GCF_000188095.2_BIMP_2.1_rna_from_genomic.fna.gz
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/095/GCF_000188095.2_BIMP_2.1/GCF_000188095.2_BIMP_2.1_translated_cds.faa.gz
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/095/GCF_000188095.2_BIMP_2.1/GCF_000188095.2_BIMP_2.1_cds_from_genomic.fna.gz

Information about this dataset can be found here:
https://i5k.nal.usda.gov/node/739249


The following files were retrieved from BeeBase on 08/30/2018:
http://hymenopteragenome.org/beebase/sites/hymenopteragenome.org.beebase/files/data/consortium_data/bimp_OGSv1.0_cds.fa.gz
http://hymenopteragenome.org/beebase/sites/hymenopteragenome.org.beebase/files/data/consortium_data/bimp_OGSv1.0.gff3.gz
http://hymenopteragenome.org/beebase/sites/hymenopteragenome.org.beebase/files/data/consortium_data/bimp_OGSv1.0_pep.fa.gz

Information about this dataset can be found here:
https://i5k.nal.usda.gov/node/739243

The file bimp_OGSv1.0.gff3 was post-processed to update the coordinate system to the NCBI coordinate system. The resulting file is:
bomimp_OGSv1.1.2.gff3. This file was used for the JBrowse genome browser and the Apollo manual curation tool.
The file bimp_OGSv1.0_cds.fa was post-processed to remove the sequences that didn’t make it through coordinates_conversion. The resulting file is:
bomimp_OGSv1.1_cds.fa. This file was used for the JBrowse genome browser and the Apollo manual curation tool.
The file bimp_OGSv1.0_pep.fa was post-processed to remove the sequences that didn’t make it through coordinates_conversion. The resulting file is:
bomimp_OGSv1.1_pep.fa. This file was used for the JBrowse genome browser and the Apollo manual curation tool.
bomimp_OGSv1.0_removed.gff3. This file contains all models that were removed from OGSv1.0 using the coordinates_conversion tool.