The files in this directory represent functional annotations of the following dataset:
https://i5k.nal.usda.gov/data/Arthropoda/athros-(Athalia_rosae)/BCM-After-Atlas/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/BCM_version_0.5.3-Primary_Gene_Set/primary_gene_set/AROS.faa.gz

More information about this dataset is available here:https://i5k.nal.usda.gov/bio_data/1193328

Information about the functional annotation process can be found here: https://agbase-docs.readthedocs.io/en/latest/

The file AROS.faa was post-processed with agbase/goanna:2.1 (https://hub.docker.com/repository/docker/agbase/goanna/tags?page=1) docker container to generate GO functional annotation. The resulting files are:
GOanna.goanna.exponly.invertb.percentident70_qcov70.ratioqrysublen1.2.out.asn
GOanna.goanna.exponly.invertb.percentident70_qcov70.ratioqrysublen1.2.out.html
GOanna.goanna.exponly.invertb.percentident70_qcov70.ratioqrysublen1.2.out.tsv
GOanna.goanna.exponly.invertb.percentident70_qcov70.ratioqrysublen1.2.out_goanna_gaf.tsv


The file AROS.faa was post-processed with agbase/interproscan:5.45-80.0_0 (https://hub.docker.com/repository/docker/agbase/interproscan/tags?page=1) docker container to generate GO and pathway functional annotation. The resulting files are:
def-45-80-AROS_full/AROS.err          def-45-80-AROS_full/AROS_acc_go_counts.txt
def-45-80-AROS_full/AROS.gff3         def-45-80-AROS_full/AROS_acc_interpro_counts.txt
def-45-80-AROS_full/AROS.html.tar.gz  def-45-80-AROS_full/AROS_acc_pathway_counts.txt
def-45-80-AROS_full/AROS.json         def-45-80-AROS_full/AROS_gaf.txt
def-45-80-AROS_full/AROS.svg.tar.gz   def-45-80-AROS_full/AROS_go_counts.txt
def-45-80-AROS_full/AROS.tsv          def-45-80-AROS_full/AROS_interpro_counts.txt
def-45-80-AROS_full/AROS.xml          def-45-80-AROS_full/AROS_pathway_counts.txt


The file AROS.faa was post-processed with agbase/kobas:3.0.3_0 (https://hub.docker.com/repository/docker/agbase/kobas/tags?page=1) docker container to generate pathway functional annotation. The resulting files are:
def-annotate_KOBAS_pathways_acc.tsv
def-annotate_acc_KOBAS_pathways.tsv