Accession_ID Pathway_Count Pathway_IDs Pathway_Names maker-scaffold1853-size510987-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-1237044 "Erythrocytes take up carbon dioxide and release oxygen" maker-scaffold1280-size605009-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-375276;Reactome: R-HSA-416476 "Peptide ligand-binding receptors";"G alpha (q) signalling events" maker-scaffold826-size657871-augustus-gene-5.5-mRNA-1 1 Reactome: R-HSA-8949664 "Processing of SMDT1" augustus-scaffold6088-size213561-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-1614517 "Sulfide oxidation to sulfate" maker-scaffold2930-size303424-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-163841 "Gamma carboxylation, hypusine formation and arylsulfatase activation" maker-scaffold1781-size696304-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-5696394;Reactome: R-HSA-5689603 "DNA Damage Recognition in GG-NER";"UCH proteinases" maker-scaffold3940-size231575-augustus-gene-1.5-mRNA-1 3 Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436 "Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway" maker-scaffold257-size1050201-augustus-gene-6.2-mRNA-1 1 Reactome: R-HSA-2564830 "Cytosolic iron-sulfur cluster assembly" maker-scaffold1712-size451175-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold6316-size126661-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-5658442 "Regulation of RAS by GAPs" maker-scaffold644-size735938-augustus-gene-6.4-mRNA-1 13 Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339 "L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold1433-size500100-augustus-gene-3.1-mRNA-1 6 Reactome: R-HSA-3214841;Reactome: R-HSA-5617472;Reactome: R-HSA-8936459;Reactome: R-HSA-201722;Reactome: R-HSA-3769402;Reactome: R-HSA-8951664 "PKMTs methylate histone lysines";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Formation of the beta-catenin:TCF transactivating complex";"Deactivation of the beta-catenin transactivating complex";"Neddylation" maker-scaffold195-size1135307-augustus-gene-10.6-mRNA-1 3 Reactome: R-HSA-112311;Reactome: R-HSA-422085;Reactome: R-HSA-1483191 "Neurotransmitter clearance";"Synthesis, secretion, and deacylation of Ghrelin";"Synthesis of PC" maker-scaffold3257-size277104-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-373080 "Class B/2 (Secretin family receptors)" maker-scaffold1300-size531471-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-5689877 "Josephin domain DUBs" maker-scaffold3297-size274863-augustus-gene-1.8-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold1601-size462555-augustus-gene-3.9-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold1085-size818524-augustus-gene-7.5-mRNA-1 12 KEGG: 00603+3.2.1.52;KEGG: 00520+3.2.1.52;Reactome: R-HSA-212436;MetaCyc: PWY-7883;KEGG: 00511+3.2.1.52;Reactome: R-HSA-1989781;KEGG: 00513+3.2.1.52;MetaCyc: PWY-6902;MetaCyc: PWY-7822;Reactome: R-HSA-381340;KEGG: 00604+3.2.1.52;KEGG: 00531+3.2.1.52 "Glycosphingolipid biosynthesis - globo and isoglobo series";"Amino sugar and nucleotide sugar metabolism";"Generic Transcription Pathway";"Anhydromuropeptides recycling II";"Other glycan degradation";"PPARA activates gene expression";"Various types of N-glycan biosynthesis";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Transcriptional regulation of white adipocyte differentiation";"Glycosphingolipid biosynthesis - ganglio series";"Glycosaminoglycan degradation" maker-scaffold1871-size425123-augustus-gene-3.3-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold1429-size522082-augustus-gene-1.1-mRNA-1 14 MetaCyc: PWY-5972;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-7619;MetaCyc: PWY-7602;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-7725;MetaCyc: PWY-7035;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-7036 "Stearate biosynthesis I (animals)";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis II" augustus-scaffold253-size1405574-processed-gene-9.0-mRNA-1 19 Reactome: R-HSA-3000471;Reactome: R-HSA-8964038;Reactome: R-HSA-381426;Reactome: R-HSA-8963901;Reactome: R-HSA-8856825;Reactome: R-HSA-8866423;Reactome: R-HSA-8964026;Reactome: R-HSA-8964041;Reactome: R-HSA-8856828;Reactome: R-HSA-202733;Reactome: R-HSA-3000484;Reactome: R-HSA-3000480;Reactome: R-HSA-8964046;Reactome: R-HSA-3000497;Reactome: R-HSA-5686938;Reactome: R-HSA-432142;Reactome: R-HSA-8957275;Reactome: R-HSA-8963888;Reactome: R-HSA-975634 "Scavenging by Class B Receptors";"LDL clearance";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Chylomicron remodeling";"Cargo recognition for clathrin-mediated endocytosis";"VLDL assembly";"Chylomicron clearance";"LDL remodeling";"Clathrin-mediated endocytosis";"Cell surface interactions at the vascular wall";"Scavenging by Class F Receptors";"Scavenging by Class A Receptors";"VLDL clearance";"Scavenging by Class H Receptors";"Regulation of TLR by endogenous ligand";"Platelet sensitization by LDL";"Post-translational protein phosphorylation";"Chylomicron assembly";"Retinoid metabolism and transport" augustus-scaffold6463-size122668-processed-gene-0.0-mRNA-1 7 Reactome: R-HSA-381042;Reactome: R-HSA-983170;Reactome: R-HSA-381070;Reactome: R-HSA-381033;Reactome: R-HSA-114608;Reactome: R-HSA-381183;Reactome: R-HSA-3371453 "PERK regulates gene expression";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"IRE1alpha activates chaperones";"ATF6 (ATF6-alpha) activates chaperones";"Platelet degranulation";"ATF6 (ATF6-alpha) activates chaperone genes";"Regulation of HSF1-mediated heat shock response" maker-scaffold2003-size405884-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-83936 "Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane" maker-scaffold243-size1067493-augustus-gene-3.4-mRNA-1 3 Reactome: R-HSA-2514859;MetaCyc: PWY-7799;MetaCyc: PWY-7800 "Inactivation, recovery and regulation of the phototransduction cascade";"Arg/N-end rule pathway (eukaryotic)";"Ac/N-end rule pathway" maker-scaffold2574-size343500-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-432722 "Golgi Associated Vesicle Biogenesis" maker-scaffold4543-size202442-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold818-size662412-augustus-gene-2.1-mRNA-1 24 Reactome: R-HSA-6807878;Reactome: R-HSA-6811436;Reactome: R-HSA-9609690;Reactome: R-HSA-8955332;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-380320;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-9619483;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-983189;Reactome: R-HSA-5663220 "COPI-mediated anterograde transport";"COPI-independent Golgi-to-ER retrograde traffic";"HCMV Early Events";"Carboxyterminal post-translational modifications of tubulin";"Gap junction assembly";"Cilium Assembly";"Recruitment of NuMA to mitotic centrosomes";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Activation of AMPK downstream of NMDARs";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Kinesins";"RHO GTPases Activate Formins" maker-scaffold1543-size476654-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-913709 "O-linked glycosylation of mucins" maker-scaffold928-size626860-augustus-gene-5.2-mRNA-1 1 Reactome: R-HSA-977347 "Serine biosynthesis" maker-scaffold919-size629304-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-611105 "Respiratory electron transport" maker-scaffold256-size1053011-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" maker-scaffold1406-size505699-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-1482798;Reactome: R-HSA-1268020 "Acyl chain remodeling of CL";"Mitochondrial protein import" maker-scaffold6085-size132685-augustus-gene-0.7-mRNA-1 5 MetaCyc: PWY-5189;KEGG: 00860+4.2.1.24;Reactome: R-HSA-6798695;MetaCyc: PWY-5188;Reactome: R-HSA-189451 "Tetrapyrrole biosynthesis II (from glycine)";"Porphyrin and chlorophyll metabolism";"Neutrophil degranulation";"Tetrapyrrole biosynthesis I (from glutamate)";"Heme biosynthesis" maker-scaffold3386-size273451-augustus-gene-1.4-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold266-size1047221-augustus-gene-9.4-mRNA-1 7 MetaCyc: PWY-7791;MetaCyc: PWY-7400;KEGG: 00240+6.3.5.5;KEGG: 00250+6.3.5.5;MetaCyc: PWY-5686;MetaCyc: PWY-7790;MetaCyc: PWY-5154 "UMP biosynthesis III";"L-arginine biosynthesis IV (archaebacteria)";"Pyrimidine metabolism";"Alanine, aspartate and glutamate metabolism";"UMP biosynthesis I";"UMP biosynthesis II";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)" maker-scaffold4830-size336221-augustus-gene-2.14-mRNA-1 3 Reactome: R-HSA-5389840;Reactome: R-HSA-5368286;Reactome: R-HSA-5419276 "Mitochondrial translation elongation";"Mitochondrial translation initiation";"Mitochondrial translation termination" maker-scaffold5593-size154245-augustus-gene-0.3-mRNA-1 5 MetaCyc: PWY-5981;KEGG: 00564+2.7.7.41;MetaCyc: PWY-7817;KEGG: 04070+2.7.7.41;MetaCyc: PWY-5667 "CDP-diacylglycerol biosynthesis III";"Glycerophospholipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidylinositol signaling system";"CDP-diacylglycerol biosynthesis I" maker-scaffold3884-size236876-augustus-gene-1.9-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold730-size696878-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-8849932 "Synaptic adhesion-like molecules" maker-scaffold99-size1431018-augustus-gene-9.2-mRNA-1 20 Reactome: R-HSA-6804757;Reactome: R-HSA-8943724;Reactome: R-HSA-5628897;Reactome: R-HSA-165159;Reactome: R-HSA-5218920;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-5674400;KEGG: 04714+2.7.11.1;Reactome: R-HSA-166208;KEGG: 04151+2.7.11.1;Reactome: R-HSA-3371571;Reactome: R-HSA-1257604;KEGG: 05165+2.7.11.1;Reactome: R-HSA-389357;KEGG: 04926+2.7.11.1;Reactome: R-HSA-1632852 "Regulation of TP53 Degradation";"Regulation of PTEN gene transcription";"TP53 Regulates Metabolic Genes";"mTOR signalling";"VEGFR2 mediated vascular permeability";"mTOR signaling pathway";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"Constitutive Signaling by AKT1 E17K in Cancer";"Thermogenesis";"mTORC1-mediated signalling";"PI3K-Akt signaling pathway";"HSF1-dependent transactivation";"PIP3 activates AKT signaling";"Human papillomavirus infection";"CD28 dependent PI3K/Akt signaling";"Relaxin signaling pathway";"Macroautophagy" maker-scaffold340-size959913-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold320-size989160-augustus-gene-7.3-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-8876725 "Respiratory electron transport";"Protein methylation" maker-scaffold4473-size204198-augustus-gene-1.4-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold4675-size195015-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-5620922 "BBSome-mediated cargo-targeting to cilium" augustus-scaffold30526-size19123-processed-gene-0.0-mRNA-1 13 Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764 "Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination" maker-scaffold293-size1005519-augustus-gene-6.1-mRNA-1 13 MetaCyc: PWY-6545;MetaCyc: PWY-7222;KEGG: 00480+1.17.4.1;KEGG: 00240+1.17.4.1;MetaCyc: PWY-7227;MetaCyc: PWY-7210;KEGG: 00230+1.17.4.1;MetaCyc: PWY-7220;KEGG: 00983+1.17.4.1;Reactome: R-HSA-499943;MetaCyc: PWY-7198;MetaCyc: PWY-7226;MetaCyc: PWY-7184 "Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Glutathione metabolism";"Pyrimidine metabolism";"Adenosine deoxyribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Purine metabolism";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Drug metabolism - other enzymes";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotides de novo biosynthesis I" maker-scaffold608-size753027-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold1291-size526777-augustus-gene-1.8-mRNA-1 2 KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685 "Glutathione metabolism";"Detoxification of Reactive Oxygen Species" maker-scaffold4138-size219982-augustus-gene-1.1-mRNA-1 6 Reactome: R-HSA-73762;Reactome: R-HSA-73863;Reactome: R-HSA-73772;Reactome: R-HSA-5250924;Reactome: R-HSA-427413;Reactome: R-HSA-427359 "RNA Polymerase I Transcription Initiation";"RNA Polymerase I Transcription Termination";"RNA Polymerase I Promoter Escape";"B-WICH complex positively regulates rRNA expression";"NoRC negatively regulates rRNA expression";"SIRT1 negatively regulates rRNA expression" maker-scaffold3448-size295922-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold5634-size165724-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" maker-scaffold5845-size197727-augustus-gene-0.7-mRNA-1 2 MetaCyc: PWY-7560;KEGG: 00900+2.7.7.60 "Methylerythritol phosphate pathway II";"Terpenoid backbone biosynthesis" maker-scaffold1570-size478382-augustus-gene-3.4-mRNA-1 1 MetaCyc: PWY-6829 "Trna methylation (yeast)" maker-scaffold2228-size376546-augustus-gene-2.8-mRNA-1 1 Reactome: R-HSA-8949664 "Processing of SMDT1" maker-scaffold166-size1230825-augustus-gene-6.4-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold137-size1323436-augustus-gene-5.2-mRNA-1 8 KEGG: 00190+7.1.2.2;MetaCyc: PWY-7980;Reactome: R-HSA-77387;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-983712;Reactome: R-HSA-917977;KEGG: 00195+7.1.2.2 "Oxidative phosphorylation";"ATP biosynthesis";"Insulin receptor recycling";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Ion channel transport";"Transferrin endocytosis and recycling";"Photosynthesis" maker-scaffold5832-size145800-augustus-gene-0.7-mRNA-1 2 Reactome: R-HSA-111458;Reactome: R-HSA-9627069 "Formation of apoptosome";"Regulation of the apoptosome activity" maker-scaffold4117-size221506-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-8876198;Reactome: R-HSA-5357905 "RAB GEFs exchange GTP for GDP on RABs";"Regulation of TNFR1 signaling" maker-scaffold714-size709863-augustus-gene-6.3-mRNA-1 15 MetaCyc: PWY-5723;KEGG: 00010+2.7.1.40;MetaCyc: PWY-7218;MetaCyc: PWY-5484;MetaCyc: PWY-1042;KEGG: 00620+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-6142;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-7003;KEGG: 00230+2.7.1.40;Reactome: R-HSA-70171;MetaCyc: PWY-2221;MetaCyc: PWY-7383 "Rubisco shunt";"Glycolysis / Gluconeogenesis";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Pyruvate metabolism";"Superpathway of glucose and xylose degradation";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Glycerol degradation to butanol";"Purine metabolism";"Glycolysis";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Anaerobic energy metabolism (invertebrates, cytosol)" maker-scaffold2921-size304946-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" augustus-scaffold5265-size167214-processed-gene-0.2-mRNA-1 2 Reactome: R-HSA-8876198;Reactome: R-HSA-194840 "RAB GEFs exchange GTP for GDP on RABs";"Rho GTPase cycle" maker-scaffold63-size1621153-augustus-gene-6.3-mRNA-1 1 Reactome: R-HSA-191859 "snRNP Assembly" maker-scaffold1633-size589899-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold363-size1709534-augustus-gene-2.1-mRNA-1 6 KEGG: 00680+5.4.2.11;MetaCyc: PWY-5484;KEGG: 00010+5.4.2.11;MetaCyc: PWY-1622;MetaCyc: PWY-8004;KEGG: 00260+5.4.2.11 "Methane metabolism";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis / Gluconeogenesis";"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I";"Glycine, serine and threonine metabolism" augustus-scaffold1764-size441777-processed-gene-3.2-mRNA-1 1 Reactome: R-HSA-5610787 "Hedgehog 'off' state" maker-scaffold4537-size199970-augustus-gene-0.8-mRNA-1 5 Reactome: R-HSA-159231;Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-77595;Reactome: R-HSA-73856 "Transport of Mature mRNA Derived from an Intronless Transcript";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination" maker-scaffold9480-size50724-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" augustus-scaffold3353-size303961-processed-gene-1.3-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1098-size570766-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" augustus-scaffold6494-size242120-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-5620922 "BBSome-mediated cargo-targeting to cilium" augustus-scaffold32-size2469902-processed-gene-11.0-mRNA-1 1 Reactome: R-HSA-2028269 "Signaling by Hippo" maker-scaffold570-size783280-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold2756-size319611-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-427601 "Multifunctional anion exchangers" augustus-scaffold546-size810909-processed-gene-2.2-mRNA-1 6 Reactome: R-HSA-72163;Reactome: R-HSA-111367;Reactome: R-HSA-77588;Reactome: R-HSA-73856;Reactome: R-HSA-72165;Reactome: R-HSA-191859 "mRNA Splicing - Major Pathway";"SLBP independent Processing of Histone Pre-mRNAs";"SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs";"RNA Polymerase II Transcription Termination";"mRNA Splicing - Minor Pathway";"snRNP Assembly" maker-scaffold5631-size153369-augustus-gene-0.9-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold2052-size398267-augustus-gene-2.15-mRNA-1 3 Reactome: R-HSA-2024101;Reactome: R-HSA-2206296;Reactome: R-HSA-2024096 "CS/DS degradation";"MPS II - Hunter syndrome";"HS-GAG degradation" maker-scaffold12658-size22075-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-110312;Reactome: R-HSA-5656121;Reactome: R-HSA-5655862 "Translesion synthesis by REV1";"Translesion synthesis by POLI";"Translesion synthesis by POLK" augustus-scaffold2628-size332077-processed-gene-2.2-mRNA-1 10 Reactome: R-HSA-70171;Reactome: R-HSA-70263;MetaCyc: PWY-7003;MetaCyc: PWY-6886;MetaCyc: PWY-8004;KEGG: 00710+2.7.2.3;KEGG: 00010+2.7.2.3;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-5484 "Glycolysis";"Gluconeogenesis";"Glycerol degradation to butanol";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Carbon fixation in photosynthetic organisms";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)" maker-scaffold726-size980707-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-425561 "Sodium/Calcium exchangers" maker-scaffold5056-size176084-augustus-gene-0.7-mRNA-1 1 Reactome: R-HSA-5635838 "Activation of SMO" maker-scaffold1371-size831444-augustus-gene-1.4-mRNA-1 57 Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-211733;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-174154;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-1169091;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783 "NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"APC/C:Cdc20 mediated degradation of Securin";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"Activation of NF-kappaB in B cells";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"Hedgehog 'on' state";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome" maker-scaffold73-size1549181-augustus-gene-10.6-mRNA-1 12 KEGG: 00564+3.1.1.4;MetaCyc: PWY-6803;MetaCyc: PWY-7417;KEGG: 00565+3.1.1.4;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7416;MetaCyc: PWY-7783;KEGG: 00591+3.1.1.4;KEGG: 00592+3.1.1.4;MetaCyc: PWY-8051;MetaCyc: PWY-7409;MetaCyc: PWY-8053 "Glycerophospholipid metabolism";"Phosphatidylcholine acyl editing";"Phospholipid remodeling (phosphatidate, yeast)";"Ether lipid metabolism";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Plasmalogen degradation";"Linoleic acid metabolism";"alpha-Linolenic acid metabolism";"Anandamide biosynthesis I";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Anandamide biosynthesis II" maker-scaffold8673-size65049-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-3214847;Reactome: R-HSA-427413 "HATs acetylate histones";"NoRC negatively regulates rRNA expression" maker-scaffold7857-size82384-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-8949664 "Processing of SMDT1" maker-scaffold735-size695327-augustus-gene-3.2-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I" maker-scaffold861-size647090-augustus-gene-0.1-mRNA-1 10 MetaCyc: PWY-6397;MetaCyc: PWY-7328;MetaCyc: PWY-7344;KEGG: 00052+5.1.3.2;MetaCyc: PWY-3821;Reactome: R-HSA-70370;KEGG: 00520+5.1.3.2;Reactome: R-HSA-5609977;MetaCyc: PWY-6527;MetaCyc: PWY-6317 "Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"UDP-alpha-D-galactose biosynthesis";"Galactose metabolism";"D-galactose detoxification";"Galactose catabolism";"Amino sugar and nucleotide sugar metabolism";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Stachyose degradation";"D-galactose degradation I (Leloir pathway)" maker-scaffold938-size622921-augustus-gene-1.3-mRNA-1 6 MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884;Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84 "Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I";"Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis" maker-scaffold3150-size285093-augustus-gene-1.13-mRNA-1 1 Reactome: R-HSA-163560 "Triglyceride catabolism" maker-scaffold2014-size471877-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold12417-size40439-augustus-gene-0.1-mRNA-1 13 Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957 "Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold2329-size366112-augustus-gene-1.5-mRNA-1 27 Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-159227;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-6784531;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-4085377;Reactome: R-HSA-168325;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-5578749;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-3301854;Reactome: R-HSA-170822;Reactome: R-HSA-3108214 "SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"snRNP Assembly";"HCMV Early Events";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"tRNA processing in the nucleus";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of SUMOylation proteins";"Viral Messenger RNA Synthesis";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"Transcriptional regulation by small RNAs";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"Nuclear Pore Complex (NPC) Disassembly";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"SUMOylation of DNA damage response and repair proteins" maker-scaffold2725-size326807-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold2757-size326236-augustus-gene-2.3-mRNA-1 2 MetaCyc: PWY-6281;KEGG: 00450+2.7.9.3 "L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Selenocompound metabolism" maker-scaffold2895-size321242-augustus-gene-1.6-mRNA-1 4 Reactome: R-HSA-5693554;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693579 "Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Homologous DNA Pairing and Strand Exchange" maker-scaffold3324-size275644-augustus-gene-1.5-mRNA-1 5 Reactome: R-HSA-75105;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-2426168 "Fatty acyl-CoA biosynthesis";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Activation of gene expression by SREBF (SREBP)" maker-scaffold4373-size210155-augustus-gene-1.8-mRNA-1 3 KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16 "Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway" maker-scaffold20955-size24316-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold9263-size54682-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-8866654;Reactome: R-HSA-9033241 "E3 ubiquitin ligases ubiquitinate target proteins";"Peroxisomal protein import" maker-scaffold7054-size106954-augustus-gene-0.4-mRNA-1 15 Reactome: R-HSA-5628897;Reactome: R-HSA-2559585;Reactome: R-HSA-1912408;Reactome: R-HSA-9018519;Reactome: R-HSA-2559580;Reactome: R-HSA-8986944;Reactome: R-HSA-8936459;Reactome: R-HSA-8853884;Reactome: R-HSA-8934593;Reactome: R-HSA-8943723;Reactome: R-HSA-9029569;Reactome: R-HSA-8948700;Reactome: R-HSA-5687128;Reactome: R-HSA-9022692;Reactome: R-HSA-4086398 "TP53 Regulates Metabolic Genes";"Oncogene Induced Senescence";"Pre-NOTCH Transcription and Translation";"Estrogen-dependent gene expression";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by MECP2";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Transcriptional Regulation by VENTX";"Regulation of RUNX1 Expression and Activity";"Regulation of PTEN mRNA translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MAPK6/MAPK4 signaling";"Regulation of MECP2 expression and activity";"Ca2+ pathway" maker-scaffold801-size700172-augustus-gene-4.4-mRNA-1 12 KEGG: 00380+2.6.1.7;MetaCyc: PWY-6309;MetaCyc: PWY-6936;MetaCyc: PWY-801;MetaCyc: PWY-7901;MetaCyc: PWY-601;MetaCyc: PWY-6842;MetaCyc: PWY-2821;Reactome: R-HSA-71240;KEGG: 00450+4.4.1.13;MetaCyc: PWY-1187;KEGG: 00270+4.4.1.13 "Tryptophan metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Seleno-amino acid biosynthesis (plants)";"Homocysteine and cysteine interconversion";"Glucosinolate biosynthesis from tyrosine";"Glucosinolate biosynthesis from tryptophan";"Glutathione-mediated detoxification II";"Glucosinolate biosynthesis from phenylalanine";"Tryptophan catabolism";"Selenocompound metabolism";"Glucosinolate biosynthesis from homomethionine";"Cysteine and methionine metabolism" maker-scaffold266-size1047221-augustus-gene-9.3-mRNA-1 7 KEGG: 00250+6.3.5.5;MetaCyc: PWY-5686;MetaCyc: PWY-7791;KEGG: 00240+6.3.5.5;MetaCyc: PWY-7400;MetaCyc: PWY-5154;MetaCyc: PWY-7790 "Alanine, aspartate and glutamate metabolism";"UMP biosynthesis I";"UMP biosynthesis III";"Pyrimidine metabolism";"L-arginine biosynthesis IV (archaebacteria)";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"UMP biosynthesis II" maker-scaffold1910-size418494-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold28229-size8207-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold4730-size192217-augustus-gene-0.4-mRNA-1 2 KEGG: 00860+4.99.1.1;Reactome: R-HSA-189451 "Porphyrin and chlorophyll metabolism";"Heme biosynthesis" maker-scaffold1936-size415324-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-5625900 "RHO GTPases activate CIT" maker-scaffold2129-size389670-augustus-gene-2.2-mRNA-1 16 Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553 "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs" maker-scaffold884-size682948-augustus-gene-1.7-mRNA-1 3 KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16 "T cell receptor signaling pathway";"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer" maker-scaffold133-size1635514-augustus-gene-2.5-mRNA-1 2 KEGG: 00670+2.1.2.9;KEGG: 00970+2.1.2.9 "One carbon pool by folate";"Aminoacyl-tRNA biosynthesis" maker-scaffold346-size955665-augustus-gene-6.3-mRNA-1 19 Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-6790901;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-72764;Reactome: R-HSA-3214858;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-2408557;Reactome: R-HSA-8876725;Reactome: R-HSA-72695 "Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"rRNA modification in the nucleus and cytosol";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Eukaryotic Translation Termination";"RMTs methylate histone arginines";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Selenocysteine synthesis";"Protein methylation";"Formation of the ternary complex, and subsequently, the 43S complex" maker-scaffold2691-size760543-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold7475-size92788-augustus-gene-0.4-mRNA-1 11 KEGG: 00564+3.1.3.4;KEGG: 00565+3.1.3.4;Reactome: R-HSA-2029485;MetaCyc: PWY-7782;MetaCyc: PWY-6453;MetaCyc: PWY-8053;KEGG: 00600+3.1.3.4;MetaCyc: PWY-8051;MetaCyc: PWY-8055;MetaCyc: PWY-8052;KEGG: 00561+3.1.3.4 "Glycerophospholipid metabolism";"Ether lipid metabolism";"Role of phospholipids in phagocytosis";"Plasmalogen biosynthesis";"Stigma estolide biosynthesis";"Anandamide biosynthesis II";"Sphingolipid metabolism";"Anandamide biosynthesis I";"Palmitoyl ethanolamide biosynthesis";"2-arachidonoylglycerol biosynthesis";"Glycerolipid metabolism" maker-scaffold117-size1389577-augustus-gene-6.0-mRNA-1 14 Reactome: R-HSA-4419969;MetaCyc: PWY-8051;MetaCyc: PWY-8053;KEGG: 00600+3.1.3.4;MetaCyc: PWY-8052;KEGG: 00561+3.1.3.4;MetaCyc: PWY-8055;Reactome: R-HSA-75109;KEGG: 00565+3.1.3.4;KEGG: 00564+3.1.3.4;Reactome: R-HSA-1483213;MetaCyc: PWY-7782;MetaCyc: PWY-6453;Reactome: R-HSA-1483191 "Depolymerisation of the Nuclear Lamina";"Anandamide biosynthesis I";"Anandamide biosynthesis II";"Sphingolipid metabolism";"2-arachidonoylglycerol biosynthesis";"Glycerolipid metabolism";"Palmitoyl ethanolamide biosynthesis";"Triglyceride biosynthesis";"Ether lipid metabolism";"Glycerophospholipid metabolism";"Synthesis of PE";"Plasmalogen biosynthesis";"Stigma estolide biosynthesis";"Synthesis of PC" maker-scaffold8539-size68886-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-8949613;Reactome: R-HSA-163210 "Cristae formation";"Formation of ATP by chemiosmotic coupling" maker-scaffold1300-size531471-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold2361-size361633-augustus-gene-2.8-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold2421-size364865-augustus-gene-2.8-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold473-size853037-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-5632928 "Defective Mismatch Repair Associated With MSH2" maker-scaffold511-size829660-augustus-gene-6.2-mRNA-1 9 Reactome: R-HSA-76042;Reactome: R-HSA-6807505;Reactome: R-HSA-674695;Reactome: R-HSA-167172;Reactome: R-HSA-73779;Reactome: R-HSA-73776;Reactome: R-HSA-75953;Reactome: R-HSA-167162;Reactome: R-HSA-167161 "RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events";"Transcription of the HIV genome";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"HIV Transcription Initiation" maker-scaffold159-size1264154-augustus-gene-2.5-mRNA-1 16 Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-2408557 "L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis" maker-scaffold2863-size320851-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold5322-size164179-augustus-gene-0.12-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold146-size1707336-augustus-gene-16.1-mRNA-1 6 KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00531+3.2.1.23 "Galactose metabolism";"Other glycan degradation";"Xyloglucan degradation II (exoglucanase)";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Glycosaminoglycan degradation" maker-scaffold1590-size464030-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold2680-size329238-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-8949613 "Cristae formation" maker-scaffold3756-size245774-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" maker-scaffold1039-size940658-augustus-gene-2.4-mRNA-1 8 Reactome: R-HSA-380320;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380284;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-6798695;Reactome: R-HSA-380270 "Recruitment of NuMA to mitotic centrosomes";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Loss of proteins required for interphase microtubule organization from the centrosome";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Neutrophil degranulation";"Recruitment of mitotic centrosome proteins and complexes" maker-scaffold2528-size345412-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-912446 "Meiotic recombination" augustus-scaffold2750-size610360-processed-gene-2.1-mRNA-1 57 Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-1236974;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-5632684;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-2871837;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-174154;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-6798695;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-4641257;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-5607761;Reactome: R-HSA-1236978 "Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"ER-Phagosome pathway";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Hedgehog 'on' state";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"FCERI mediated NF-kB activation";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"APC/C:Cdc20 mediated degradation of Securin";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Neutrophil degranulation";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Degradation of AXIN";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Dectin-1 mediated noncanonical NF-kB signaling";"Cross-presentation of soluble exogenous antigens (endosomes)" maker-scaffold5547-size155330-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-6811438 "COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic" maker-scaffold7517-size91104-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold1113-size690638-augustus-gene-3.2-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-429958 "Association of TriC/CCT with target proteins during biosynthesis";"mRNA decay by 3' to 5' exoribonuclease" maker-scaffold5224-size175080-augustus-gene-0.4-mRNA-1 5 Reactome: R-HSA-2426168;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-75105 "Activation of gene expression by SREBF (SREBP)";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Fatty acyl-CoA biosynthesis" maker-scaffold494-size833938-augustus-gene-4.8-mRNA-1 1 Reactome: R-HSA-429947 "Deadenylation of mRNA" maker-scaffold5536-size157950-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-162710 "Synthesis of glycosylphosphatidylinositol (GPI)" maker-scaffold6489-size120843-augustus-gene-0.4-mRNA-1 13 MetaCyc: PWY-5913;MetaCyc: PWY-6969;KEGG: 00660+6.2.1.5;Reactome: R-HSA-71403;MetaCyc: PWY-5537;MetaCyc: PWY-5690;MetaCyc: PWY-5392;MetaCyc: PWY-6728;KEGG: 00720+6.2.1.5;MetaCyc: PWY-7384;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5538 "Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"C5-Branched dibasic acid metabolism";"Citric acid cycle (TCA cycle)";"Pyruvate fermentation to acetate V";"TCA cycle II (plants and fungi)";"Reductive TCA cycle II";"Methylaspartate cycle";"Carbon fixation pathways in prokaryotes";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Pyruvate fermentation to acetate VI" maker-scaffold3725-size243714-augustus-gene-1.15-mRNA-1 2 MetaCyc: PWY-7851;KEGG: 00770+2.7.1.24 "Coenzyme A biosynthesis II (eukaryotic)";"Pantothenate and CoA biosynthesis" maker-scaffold1317-size522717-augustus-gene-3.2-mRNA-1 2 Reactome: R-HSA-8950505;Reactome: R-HSA-1237112 "Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Methionine salvage pathway" maker-scaffold14501-size18043-augustus-gene-0.1-mRNA-1 5 MetaCyc: PWY-5084;KEGG: 00310+1.2.4.2;KEGG: 00380+1.2.4.2;KEGG: 00020+1.2.4.2;Reactome: R-HSA-389661 "2-oxoglutarate decarboxylation to succinyl-CoA";"Lysine degradation";"Tryptophan metabolism";"Citrate cycle (TCA cycle)";"Glyoxylate metabolism and glycine degradation" maker-scaffold6313-size145121-augustus-gene-0.5-mRNA-1 14 MetaCyc: PWY-7124;MetaCyc: PWY-2221;MetaCyc: PWY-7003;MetaCyc: PWY-6886;MetaCyc: PWY-1622;MetaCyc: PWY-8004;KEGG: 00010+4.2.1.11;MetaCyc: PWY-6142;KEGG: 00680+4.2.1.11;MetaCyc: PWY-6901;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-7218;MetaCyc: PWY-5723 "Ethylene biosynthesis V (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Glycerol degradation to butanol";"1-butanol autotrophic biosynthesis (engineered)";"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I";"Glycolysis / Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Methane metabolism";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Rubisco shunt" maker-scaffold9428-size51849-augustus-gene-0.4-mRNA-1 2 KEGG: 00510+2.4.1.256;Reactome: R-HSA-446193 "N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" augustus-scaffold2490-size350306-processed-gene-2.0-mRNA-1 8 KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-428540;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1 "Relaxin signaling pathway";"Human papillomavirus infection";"Activation of RAC1";"PI3K-Akt signaling pathway";"Thermogenesis";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway" maker-scaffold1365-size837566-augustus-gene-2.3-mRNA-1 3 MetaCyc: PWY-6807;KEGG: 00511+3.2.1.51;Reactome: R-HSA-6798695 "Xyloglucan degradation II (exoglucanase)";"Other glycan degradation";"Neutrophil degranulation" maker-scaffold3296-size275586-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1682-size453968-augustus-gene-3.9-mRNA-1 3 Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438 "Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic" maker-scaffold7279-size99231-augustus-gene-0.1-mRNA-1 10 MetaCyc: PWY-7559;MetaCyc: PWY-7112;MetaCyc: PWY-8001;KEGG: 00460+2.3.2.2;MetaCyc: PWY-5826;MetaCyc: PWY-4041;KEGG: 00480+2.3.2.2+3.4.19.13;KEGG: 00430+2.3.2.2;MetaCyc: PWY-4061;MetaCyc: PWY-6842 "Glutathione degradation (DUG pathway";"4-hydroxy-2-nonenal detoxification";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Cyanoamino acid metabolism";"Hypoglycin biosynthesis";"Gamma-glutamyl cycle";"Glutathione metabolism";"Taurine and hypotaurine metabolism";"Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II" augustus-scaffold1041-size588988-processed-gene-4.2-mRNA-1 3 KEGG: 00531+3.2.1.50;Reactome: R-HSA-2024096;Reactome: R-HSA-2206282 "Glycosaminoglycan degradation";"HS-GAG degradation";"MPS IIIB - Sanfilippo syndrome B" maker-scaffold1885-size424393-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-112308 "Presynaptic depolarization and calcium channel opening" maker-scaffold6068-size134721-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-163282;Reactome: R-HSA-2151201 "Mitochondrial transcription initiation";"Transcriptional activation of mitochondrial biogenesis" maker-scaffold6374-size124432-augustus-gene-0.5-mRNA-1 5 Reactome: R-HSA-4341670;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695;Reactome: R-HSA-4085001;Reactome: R-HSA-1660662 "Defective NEU1 causes sialidosis";"MHC class II antigen presentation";"Neutrophil degranulation";"Sialic acid metabolism";"Glycosphingolipid metabolism" augustus-scaffold6088-size213561-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-204174;Reactome: R-HSA-5362517 "Regulation of pyruvate dehydrogenase (PDH) complex";"Signaling by Retinoic Acid" augustus-scaffold17542-size12966-processed-gene-0.1-mRNA-1 3 Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.5;Reactome: R-HSA-379716 "Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation" maker-scaffold1281-size527723-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-162791 "Attachment of GPI anchor to uPAR" maker-scaffold13412-size35802-augustus-gene-0.1-mRNA-1 6 KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00531+3.2.1.23 "Other glycan degradation";"Galactose metabolism";"Xyloglucan degradation II (exoglucanase)";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Glycosaminoglycan degradation" maker-scaffold155-size1267149-augustus-gene-6.13-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold5501-size158431-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-202433;Reactome: R-HSA-376176 "Generation of second messenger molecules";"Signaling by ROBO receptors" maker-scaffold200-size1131578-augustus-gene-0.3-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-901032 "Protein ubiquitination";"ER Quality Control Compartment (ERQC)" maker-scaffold313-size991802-augustus-gene-3.2-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold2685-size328707-augustus-gene-1.1-mRNA-1 13 Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-72689 "Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits" maker-scaffold4534-size201387-augustus-gene-1.7-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold9415-size51749-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold5661-size153848-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" augustus-scaffold26787-size8905-processed-gene-0.0-mRNA-1 16 Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-72702 "Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition" maker-scaffold576-size780973-augustus-gene-1.3-mRNA-1 6 Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-68877 "Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase" maker-scaffold4806-size283113-augustus-gene-1.12-mRNA-1 24 Reactome: R-HSA-9619483;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257;Reactome: R-HSA-5663220;Reactome: R-HSA-983189;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-8955332;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-1445148;Reactome: R-HSA-68877;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-8852276 "Activation of AMPK downstream of NMDARs";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion";"RHO GTPases Activate Formins";"Kinesins";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"HCMV Early Events";"Gap junction assembly";"Cilium Assembly";"Carboxyterminal post-translational modifications of tubulin";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Mitotic Prometaphase";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint" maker-scaffold2234-size377232-augustus-gene-2.3-mRNA-1 3 MetaCyc: PWY-7761;KEGG: 00760+3.6.1.22;MetaCyc: PWY-5381 "NAD salvage pathway II (PNC IV cycle)";"Nicotinate and nicotinamide metabolism";"Pyridine nucleotide cycling (plants)" augustus-scaffold1483-size489825-processed-gene-3.3-mRNA-1 2 Reactome: R-HSA-5689603;Reactome: R-HSA-5696394 "UCH proteinases";"DNA Damage Recognition in GG-NER" maker-scaffold597-size759082-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold172-size1218010-augustus-gene-5.3-mRNA-1 2 Reactome: R-HSA-3214815;Reactome: R-HSA-427413 "HDACs deacetylate histones";"NoRC negatively regulates rRNA expression" maker-scaffold2370-size359433-augustus-gene-2.5-mRNA-1 5 Reactome: R-HSA-6781823;Reactome: R-HSA-6782210;Reactome: R-HSA-6781827;Reactome: R-HSA-72163;Reactome: R-HSA-6782135 "Formation of TC-NER Pre-Incision Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"mRNA Splicing - Major Pathway";"Dual incision in TC-NER" augustus-scaffold7960-size83342-processed-gene-0.1-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold2822-size319237-augustus-gene-2.2-mRNA-1 2 Reactome: R-HSA-167826;Reactome: R-HSA-167827 "The fatty acid cycling model";"The proton buffering model" maker-scaffold629-size878374-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-70221 "Glycogen breakdown (glycogenolysis)" maker-scaffold939-size619574-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" maker-scaffold274-size1027688-augustus-gene-2.2-mRNA-1 1 KEGG: 00970+6.1.1.7 "Aminoacyl-tRNA biosynthesis" maker-scaffold7309-size96292-augustus-gene-0.3-mRNA-1 6 MetaCyc: PWY-6368;KEGG: 00562+3.1.3.66;Reactome: R-HSA-1660516;Reactome: R-HSA-1660499;KEGG: 04070+3.1.3.66;Reactome: R-HSA-1855183 "3-phosphoinositide degradation";"Inositol phosphate metabolism";"Synthesis of PIPs at the early endosome membrane";"Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol signaling system";"Synthesis of IP2, IP, and Ins in the cytosol" maker-scaffold6287-size128351-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-2132295;Reactome: R-HSA-877300 "MHC class II antigen presentation";"Interferon gamma signaling" maker-scaffold1194-size551978-augustus-gene-1.5-mRNA-1 2 Reactome: R-HSA-389661;Reactome: R-HSA-2408508 "Glyoxylate metabolism and glycine degradation";"Metabolism of ingested SeMet, Sec, MeSec into H2Se" maker-scaffold1194-size551978-augustus-gene-4.4-mRNA-1 56 Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-174154;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-69601;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978 "Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)" maker-scaffold921-size780965-augustus-gene-5.6-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" augustus-scaffold10381-size39269-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold8300-size73191-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold90-size1469227-augustus-gene-11.3-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" maker-scaffold2112-size394116-augustus-gene-2.11-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold292-size1007774-augustus-gene-2.2-mRNA-1 5 KEGG: 00010+4.1.1.32;MetaCyc: PWY-7383;Reactome: R-HSA-70263;KEGG: 00620+4.1.1.32;KEGG: 00020+4.1.1.32 "Glycolysis / Gluconeogenesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"Gluconeogenesis";"Pyruvate metabolism";"Citrate cycle (TCA cycle)" maker-scaffold5298-size165525-augustus-gene-0.9-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold6492-size120372-augustus-gene-0.1-mRNA-1 2 KEGG: 04660+2.7.10.2;Reactome: R-HSA-1433557 "T cell receptor signaling pathway";"Signaling by SCF-KIT" maker-scaffold190-size1159878-augustus-gene-3.2-mRNA-1 11 MetaCyc: PWY-6549;MetaCyc: PWY-7268;MetaCyc: PWY-6728;MetaCyc: PWY-7124;KEGG: 00720+1.1.1.42;KEGG: 00480+1.1.1.42;Reactome: R-HSA-71403;KEGG: 00020+1.1.1.42;MetaCyc: PWY-7254;MetaCyc: PWY-6969;MetaCyc: PWY-5913 "L-glutamine biosynthesis III";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Methylaspartate cycle";"Ethylene biosynthesis V (engineered)";"Carbon fixation pathways in prokaryotes";"Glutathione metabolism";"Citric acid cycle (TCA cycle)";"Citrate cycle (TCA cycle)";"TCA cycle VII (acetate-producers)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)" maker-scaffold260-size1049682-augustus-gene-9.4-mRNA-1 6 Reactome: R-HSA-6803204;Reactome: R-HSA-6803207;Reactome: R-HSA-6803211;Reactome: R-HSA-6803205;Reactome: R-HSA-6804759;Reactome: R-HSA-139915 "TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"TP53 Regulates Transcription of Caspase Activators and Caspases";"TP53 Regulates Transcription of Death Receptors and Ligands";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain";"Regulation of TP53 Activity through Association with Co-factors";"Activation of PUMA and translocation to mitochondria" maker-scaffold337-size964764-augustus-gene-5.3-mRNA-1 27 Reactome: R-HSA-5674400;Reactome: R-HSA-198323;KEGG: 04714+2.7.11.1;Reactome: R-HSA-4641262;KEGG: 04151+2.7.11.1;Reactome: R-HSA-5610785;Reactome: R-HSA-399956;KEGG: 05163+2.7.11.1;Reactome: R-HSA-196299;KEGG: 05170+2.7.11.1;Reactome: R-HSA-5467337;KEGG: 04150+2.7.11.1;Reactome: R-HSA-5358747;Reactome: R-HSA-5358751;Reactome: R-HSA-5467340;Reactome: R-HSA-5358752;Reactome: R-HSA-5610783;Reactome: R-HSA-5339716;Reactome: R-HSA-8939902;Reactome: R-HSA-5250924;Reactome: R-HSA-75815;KEGG: 04926+2.7.11.1;Reactome: R-HSA-3371453;Reactome: R-HSA-195253;Reactome: R-HSA-5467348;KEGG: 05165+2.7.11.1;Reactome: R-HSA-5358749 "Constitutive Signaling by AKT1 E17K in Cancer";"AKT phosphorylates targets in the cytosol";"Thermogenesis";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"PI3K-Akt signaling pathway";"GLI3 is processed to GLI3R by the proteasome";"CRMPs in Sema3A signaling";"Human cytomegalovirus infection";"Beta-catenin phosphorylation cascade";"Human immunodeficiency virus 1 infection";"APC truncation mutants have impaired AXIN binding";"mTOR signaling pathway";"S33 mutants of beta-catenin aren't phosphorylated";"S45 mutants of beta-catenin aren't phosphorylated";"AXIN missense mutants destabilize the destruction complex";"T41 mutants of beta-catenin aren't phosphorylated";"Degradation of GLI2 by the proteasome";"Misspliced GSK3beta mutants stabilize beta-catenin";"Regulation of RUNX2 expression and activity";"B-WICH complex positively regulates rRNA expression";"Ubiquitin-dependent degradation of Cyclin D";"Relaxin signaling pathway";"Regulation of HSF1-mediated heat shock response";"Degradation of beta-catenin by the destruction complex";"Truncations of AMER1 destabilize the destruction complex";"Human papillomavirus infection";"S37 mutants of beta-catenin aren't phosphorylated" augustus-scaffold8218-size75369-processed-gene-0.1-mRNA-1 14 Reactome: R-HSA-5656169;Reactome: R-HSA-6782210;Reactome: R-HSA-5685942;Reactome: R-HSA-5696397;Reactome: R-HSA-69091;Reactome: R-HSA-110312;Reactome: R-HSA-110314;Reactome: R-HSA-6782135;Reactome: R-HSA-5651801;Reactome: R-HSA-5696400;Reactome: R-HSA-5655862;Reactome: R-HSA-5656121;Reactome: R-HSA-110320;Reactome: R-HSA-174411 "Termination of translesion DNA synthesis";"Gap-filling DNA repair synthesis and ligation in TC-NER";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Polymerase switching";"Translesion synthesis by REV1";"Recognition of DNA damage by PCNA-containing replication complex";"Dual incision in TC-NER";"PCNA-Dependent Long Patch Base Excision Repair";"Dual Incision in GG-NER";"Translesion synthesis by POLK";"Translesion synthesis by POLI";"Translesion Synthesis by POLH";"Polymerase switching on the C-strand of the telomere" maker-scaffold4413-size214652-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-203927 "MicroRNA (miRNA) biogenesis" maker-scaffold1022-size592035-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold4245-size213883-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-6811440 "Retrograde transport at the Trans-Golgi-Network" augustus-scaffold2931-size305405-processed-gene-1.2-mRNA-1 2 Reactome: R-HSA-917729;Reactome: R-HSA-162588 "Endosomal Sorting Complex Required For Transport (ESCRT)";"Budding and maturation of HIV virion" maker-scaffold420-size885695-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-426048 "Arachidonate production from DAG" augustus-scaffold3353-size303961-processed-gene-2.2-mRNA-1 3 KEGG: 00510+2.4.1.267;Reactome: R-HSA-4724289;Reactome: R-HSA-446193 "N-Glycan biosynthesis";"Defective ALG6 causes ALG6-CDG (CDG-1c)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" maker-scaffold6102-size134354-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-400253 "Circadian Clock" maker-scaffold3628-size251978-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-3299685;MetaCyc: PWY-6854 "Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)" maker-scaffold2325-size364954-augustus-gene-2.6-mRNA-1 4 MetaCyc: PWY-7268;KEGG: 00030+1.1.1.49;MetaCyc: PWY-8004;KEGG: 00480+1.1.1.49 "NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Pentose phosphate pathway";"Entner-Doudoroff pathway I";"Glutathione metabolism" augustus-scaffold3110-size290132-processed-gene-1.2-mRNA-1 4 Reactome: R-HSA-8964011;Reactome: R-HSA-3359463;Reactome: R-HSA-3359462;Reactome: R-HSA-196741 "HDL clearance";"Defective CUBN causes hereditary megaloblastic anemia 1";"Defective AMN causes hereditary megaloblastic anemia 1";"Cobalamin (Cbl, vitamin B12) transport and metabolism" maker-scaffold515-size825572-augustus-gene-7.5-mRNA-1 1 Reactome: R-HSA-432720 "Lysosome Vesicle Biogenesis" maker-scaffold1333-size517824-augustus-gene-4.5-mRNA-1 6 MetaCyc: PWY-6807;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23 "Xyloglucan degradation II (exoglucanase)";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Glycosaminoglycan degradation";"Other glycan degradation";"Galactose metabolism" augustus-scaffold5731-size148564-processed-gene-0.2-mRNA-1 9 Reactome: R-HSA-5693616;Reactome: R-HSA-5693554;Reactome: R-HSA-5693579;Reactome: R-HSA-6804756;Reactome: R-HSA-5685938;Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568 "Presynaptic phase of homologous DNA pairing and strand exchange";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Homologous DNA Pairing and Strand Exchange";"Regulation of TP53 Activity through Phosphorylation";"HDR through Single Strand Annealing (SSA)";"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates" maker-scaffold4917-size186850-augustus-gene-0.5-mRNA-1 31 MetaCyc: PWY-5366;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;Reactome: R-HSA-2426168;MetaCyc: PWY-6113;Reactome: R-HSA-75105;MetaCyc: PWY-5971;MetaCyc: PWY-5966-1;Reactome: R-HSA-163765;MetaCyc: PWY-4381;MetaCyc: PWY-5147;MetaCyc: PWY-7664;MetaCyc: PWY-5994;MetaCyc: PWY-6519;MetaCyc: PWY-7388;MetaCyc: PWY-6799;MetaCyc: PWYG-321;MetaCyc: PWY-8012;MetaCyc: PWY-8049;MetaCyc: PWY-5989;MetaCyc: PWY-7723;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-5973;MetaCyc: PWY-6282;MetaCyc: PWY-7858;MetaCyc: PWY-5142;MetaCyc: PWY-8047;MetaCyc: PWY-7746;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;MetaCyc: PWY-7663;MetaCyc: PWY-5367 "Palmitoleate biosynthesis II (plants and bacteria)";"Fatty acid biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Superpathway of mycolate biosynthesis";"Fatty acyl-CoA biosynthesis";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"ChREBP activates metabolic gene expression";"Fatty acid biosynthesis initiation (bacteria and plants)";"Oleate biosynthesis I (plants)";"Oleate biosynthesis IV (anaerobic)";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"8-amino-7-oxononanoate biosynthesis I";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Fatty acid biosynthesis initiation (plant mitochondria)";"";"Mupirocin biosynthesis";"Pederin biosynthesis";"Stearate biosynthesis II (bacteria and plants)";"Bacterial bioluminescence";"Biotin metabolism";"Cis-vaccenate biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"(5Z)-dodecenoate biosynthesis II";"Acyl-[acyl-carrier protein] thioesterase pathway";"Bryostatin biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Gondoate biosynthesis (anaerobic)";"Petroselinate biosynthesis" maker-scaffold7937-size81646-augustus-gene-0.2-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis" maker-scaffold576-size780973-augustus-gene-3.1-mRNA-1 33 Reactome: R-HSA-5663220;Reactome: R-HSA-3371453;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168325;Reactome: R-HSA-168271;Reactome: R-HSA-2467813;Reactome: R-HSA-159236;Reactome: R-HSA-1169408;Reactome: R-HSA-68877;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-5619107;Reactome: R-HSA-191859;Reactome: R-HSA-159227;Reactome: R-HSA-159230;Reactome: R-HSA-2500257;Reactome: R-HSA-5578749;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3108214;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-4615885;Reactome: R-HSA-9648025;Reactome: R-HSA-168333;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-9609690 "RHO GTPases Activate Formins";"Regulation of HSF1-mediated heat shock response";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Viral Messenger RNA Synthesis";"Transport of Ribonucleoproteins into the Host Nucleus";"Separation of Sister Chromatids";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"ISG15 antiviral mechanism";"Mitotic Prometaphase";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"snRNP Assembly";"Transport of the SLBP independent Mature mRNA";"Transport of the SLBP Dependant Mature mRNA";"Resolution of Sister Chromatid Cohesion";"Transcriptional regulation by small RNAs";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"SUMOylation of DNA damage response and repair proteins";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of DNA replication proteins";"EML4 and NUDC in mitotic spindle formation";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"HCMV Early Events" augustus-scaffold21299-size16752-processed-gene-0.0-mRNA-1 17 Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-6790901;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-72702;Reactome: R-HSA-156827 "Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"rRNA modification in the nucleus and cytosol";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold2576-size340169-augustus-gene-2.17-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold384-size1733206-augustus-gene-15.3-mRNA-1 14 MetaCyc: PWY-7416;MetaCyc: PWY-7409;MetaCyc: PWY-8053;KEGG: 00564+3.1.1.4+3.1.1.5;MetaCyc: PWY-8051;KEGG: 00592+3.1.1.4;MetaCyc: PWY-7783;KEGG: 00591+3.1.1.4;MetaCyc: PWY-6803;Reactome: R-HSA-1482788;Reactome: R-HSA-975634;KEGG: 00590+3.1.1.4;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417 "Phospholipid remodeling (phosphatidylcholine, yeast)";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Anandamide biosynthesis II";"Glycerophospholipid metabolism";"Anandamide biosynthesis I";"alpha-Linolenic acid metabolism";"Plasmalogen degradation";"Linoleic acid metabolism";"Phosphatidylcholine acyl editing";"Acyl chain remodelling of PC";"Retinoid metabolism and transport";"Arachidonic acid metabolism";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)" maker-scaffold6522-size136174-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-74217;MetaCyc: PWY-6596;KEGG: 00230+3.5.4.6 "Purine salvage";"Adenosine nucleotides degradation I";"Purine metabolism" augustus-scaffold748-size1107204-processed-gene-0.0-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold1069-size578407-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold6216-size132612-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold2053-size404028-augustus-gene-2.5-mRNA-1 1 KEGG: 00480+3.4.11.1 "Glutathione metabolism" maker-scaffold75-size1537034-augustus-gene-1.5-mRNA-1 5 MetaCyc: PWY-7921;KEGG: 00514+2.4.1.109;MetaCyc: PWY-7922;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7979 "Protein O-mannosylation I (yeast)";"Other types of O-glycan biosynthesis";"Protein O-mannosylation II (mammals, core M1 and core M2)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation III (mammals, core M3)" maker-scaffold9873-size47619-augustus-gene-0.1-mRNA-1 4 MetaCyc: PWY-5189;KEGG: 00860+4.2.1.75;MetaCyc: PWY-5188;Reactome: R-HSA-189451 "Tetrapyrrole biosynthesis II (from glycine)";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)";"Heme biosynthesis" maker-scaffold904-size631665-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" augustus-scaffold539-size890513-processed-gene-3.0-mRNA-1 2 KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685 "Glutathione metabolism";"Detoxification of Reactive Oxygen Species" maker-scaffold9288-size54130-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" augustus-scaffold6926-size107405-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold1399-size886435-augustus-gene-6.6-mRNA-1 2 Reactome: R-HSA-425366;Reactome: R-HSA-1483191 "Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC" maker-scaffold7153-size100665-augustus-gene-0.1-mRNA-1 10 Reactome: R-HSA-5693554;Reactome: R-HSA-5693579;Reactome: R-HSA-6804756;Reactome: R-HSA-5685938;Reactome: R-HSA-5693616;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-912446;Reactome: R-HSA-5693607;Reactome: R-HSA-69473 "Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Homologous DNA Pairing and Strand Exchange";"Regulation of TP53 Activity through Phosphorylation";"HDR through Single Strand Annealing (SSA)";"Presynaptic phase of homologous DNA pairing and strand exchange";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Meiotic recombination";"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint" maker-scaffold9194-size55465-augustus-gene-0.2-mRNA-1 10 KEGG: 00010+5.3.1.1;KEGG: 00710+5.3.1.1;MetaCyc: PWY-1042;KEGG: 00051+5.3.1.1;MetaCyc: PWY-5484;KEGG: 00562+5.3.1.1;MetaCyc: PWY-7003;Reactome: R-HSA-70263;MetaCyc: PWY-6142;Reactome: R-HSA-70171 "Glycolysis / Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Glycolysis IV (plant cytosol)";"Fructose and mannose metabolism";"Glycolysis II (from fructose 6-phosphate)";"Inositol phosphate metabolism";"Glycerol degradation to butanol";"Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis" maker-scaffold332-size968382-augustus-gene-8.3-mRNA-1 2 Reactome: R-HSA-8949664;Reactome: R-HSA-8949215 "Processing of SMDT1";"Mitochondrial calcium ion transport" maker-scaffold5747-size178556-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-6814848 "Glycerophospholipid catabolism" maker-scaffold247-size1067859-augustus-gene-2.1-mRNA-1 3 Reactome: R-HSA-73856;Reactome: R-HSA-72187;Reactome: R-HSA-159236 "RNA Polymerase II Transcription Termination";"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript" maker-scaffold5888-size142491-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-6782315;MetaCyc: PWY-6829 "tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)" maker-scaffold3871-size234620-augustus-gene-1.6-mRNA-1 2 KEGG: 00770+6.3.2.5;Reactome: R-HSA-196783 "Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis" maker-scaffold30-size1830911-augustus-gene-7.2-mRNA-1 3 Reactome: R-HSA-8943724;Reactome: R-HSA-8939243;Reactome: R-HSA-2559580 "Regulation of PTEN gene transcription";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Oxidative Stress Induced Senescence" maker-scaffold5486-size157912-augustus-gene-0.6-mRNA-1 11 Reactome: R-HSA-205043;Reactome: R-HSA-9013507;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-1251985;Reactome: R-HSA-2979096;Reactome: R-HSA-193692;Reactome: R-HSA-2122948;Reactome: R-HSA-9017802;Reactome: R-HSA-9013700;Reactome: R-HSA-3928665 "NRIF signals cell death from the nucleus";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Nuclear signaling by ERBB4";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Regulated proteolysis of p75NTR";"Activated NOTCH1 Transmits Signal to the Nucleus";"Noncanonical activation of NOTCH3";"NOTCH4 Activation and Transmission of Signal to the Nucleus";"EPH-ephrin mediated repulsion of cells" maker-scaffold4945-size346729-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold821-size665406-augustus-gene-1.4-mRNA-1 5 Reactome: R-HSA-70895;Reactome: R-HSA-389661;MetaCyc: PWY-5046;KEGG: 00280+1.2.4.4;KEGG: 00640+1.2.4.4 "Branched-chain amino acid catabolism";"Glyoxylate metabolism and glycine degradation";"2-oxoisovalerate decarboxylation to isobutanoyl-CoA";"Valine, leucine and isoleucine degradation";"Propanoate metabolism" augustus-scaffold5631-size153369-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold608-size753027-augustus-gene-6.2-mRNA-1 2 KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981 "Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis" maker-scaffold4823-size186055-augustus-gene-0.2-mRNA-1 8 KEGG: 04926+2.7.11.1;Reactome: R-HSA-6791226;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1 "Relaxin signaling pathway";"Major pathway of rRNA processing in the nucleolus and cytosol";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"Thermogenesis";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway" augustus-scaffold1800-size438528-processed-gene-3.1-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72702 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition" maker-scaffold2214-size379349-augustus-gene-2.11-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold2459-size353855-augustus-gene-2.8-mRNA-1 18 Reactome: R-HSA-70268;Reactome: R-HSA-204174;KEGG: 00620+1.8.1.4;Reactome: R-HSA-389661;KEGG: 00640+1.8.1.4;Reactome: R-HSA-71403;MetaCyc: PWY-5084;KEGG: 00010+1.8.1.4;KEGG: 00020+1.8.1.4;Reactome: R-HSA-70895;Reactome: R-HSA-5362517;KEGG: 00260+1.8.1.4;KEGG: 00310+1.8.1.4;MetaCyc: PWY-5046;Reactome: R-HSA-71064;KEGG: 00380+1.8.1.4;Reactome: R-HSA-6783984;KEGG: 00280+1.8.1.4 "Pyruvate metabolism";"Regulation of pyruvate dehydrogenase (PDH) complex";"Pyruvate metabolism";"Glyoxylate metabolism and glycine degradation";"Propanoate metabolism";"Citric acid cycle (TCA cycle)";"2-oxoglutarate decarboxylation to succinyl-CoA";"Glycolysis / Gluconeogenesis";"Citrate cycle (TCA cycle)";"Branched-chain amino acid catabolism";"Signaling by Retinoic Acid";"Glycine, serine and threonine metabolism";"Lysine degradation";"2-oxoisovalerate decarboxylation to isobutanoyl-CoA";"Lysine catabolism";"Tryptophan metabolism";"Glycine degradation";"Valine, leucine and isoleucine degradation" maker-scaffold6112-size133595-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.24 "Lysosomal oligosaccharide catabolism";"Other glycan degradation" maker-scaffold924-size626789-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-381038;Reactome: R-HSA-1799339 "XBP1(S) activates chaperone genes";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold7983-size81011-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold818-size662412-augustus-gene-2.2-mRNA-1 24 Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-8852276;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-1445148;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436 "Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"COPI-mediated anterograde transport";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic" maker-scaffold3632-size254775-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-5625900 "RHO GTPases activate CIT" maker-scaffold735-size695327-augustus-gene-5.6-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis" maker-scaffold397-size914035-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold4831-size185454-augustus-gene-0.8-mRNA-1 13 Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-2408557 "Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis" maker-scaffold4303-size213501-augustus-gene-1.1-mRNA-1 3 KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16 "PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway" maker-scaffold1249-size530743-augustus-gene-4.5-mRNA-1 1 Reactome: R-HSA-1660499 "Synthesis of PIPs at the plasma membrane" maker-scaffold3019-size296568-augustus-gene-1.1-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold1565-size666251-augustus-gene-1.4-mRNA-1 8 Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-5099900;Reactome: R-HSA-8856825;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745 "Gap junction degradation";"Lysosome Vesicle Biogenesis";"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"WNT5A-dependent internalization of FZD4";"Cargo recognition for clathrin-mediated endocytosis";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2" maker-scaffold4861-size184976-augustus-gene-0.3-mRNA-1 5 Reactome: R-HSA-5250924;Reactome: R-HSA-427413;Reactome: R-HSA-73772;Reactome: R-HSA-73762;Reactome: R-HSA-73863 "B-WICH complex positively regulates rRNA expression";"NoRC negatively regulates rRNA expression";"RNA Polymerase I Promoter Escape";"RNA Polymerase I Transcription Initiation";"RNA Polymerase I Transcription Termination" maker-scaffold3771-size245104-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-71403;Reactome: R-HSA-611105 "Citric acid cycle (TCA cycle)";"Respiratory electron transport" maker-scaffold1682-size453968-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold92-size1446267-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-70268;KEGG: 00620+4.4.1.5;MetaCyc: PWY-5386 "Pyruvate metabolism";"Pyruvate metabolism";"Methylglyoxal degradation I" maker-scaffold1139-size564129-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-8949664 "Processing of SMDT1" maker-scaffold6179-size133441-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold1400-size508774-augustus-gene-2.7-mRNA-1 8 Reactome: R-HSA-68962;Reactome: R-HSA-68827;Reactome: R-HSA-176187;Reactome: R-HSA-68867;Reactome: R-HSA-68616;Reactome: R-HSA-68689;Reactome: R-HSA-113507;Reactome: R-HSA-68949 "Activation of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex";"Activation of ATR in response to replication stress";"Assembly of the pre-replicative complex";"Assembly of the ORC complex at the origin of replication";"CDC6 association with the ORC:origin complex";"E2F-enabled inhibition of pre-replication complex formation";"Orc1 removal from chromatin" maker-scaffold6847-size221796-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-6804115;Reactome: R-HSA-429947 "TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA" maker-scaffold549-size799076-augustus-gene-6.6-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" augustus-scaffold5957-size139843-processed-gene-0.3-mRNA-1 4 Reactome: R-HSA-2408522;Reactome: R-HSA-379726;KEGG: 00970+6.1.1.6;Reactome: R-HSA-379716 "Selenoamino acid metabolism";"Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation" maker-scaffold1918-size414359-augustus-gene-3.3-mRNA-1 8 Reactome: R-HSA-68962;Reactome: R-HSA-68827;Reactome: R-HSA-176187;Reactome: R-HSA-68867;Reactome: R-HSA-68616;Reactome: R-HSA-68689;Reactome: R-HSA-113507;Reactome: R-HSA-68949 "Activation of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex";"Activation of ATR in response to replication stress";"Assembly of the pre-replicative complex";"Assembly of the ORC complex at the origin of replication";"CDC6 association with the ORC:origin complex";"E2F-enabled inhibition of pre-replication complex formation";"Orc1 removal from chromatin" maker-scaffold6961-size105748-augustus-gene-0.6-mRNA-1 8 MetaCyc: PWY-5743;MetaCyc: PWY-6142;MetaCyc: PWY-7115;MetaCyc: PWY-7117;KEGG: 00910+4.2.1.1;MetaCyc: PWY-5744;MetaCyc: PWY-241;MetaCyc: PWY-5789 "3-hydroxypropanoate cycle";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Nitrogen metabolism";"Glyoxylate assimilation";"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle" maker-scaffold950-size615836-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-5221030 "TET1,2,3 and TDG demethylate DNA" maker-scaffold267-size1034731-augustus-gene-3.1-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" augustus-scaffold1102-size573154-processed-gene-2.0-mRNA-1 2 MetaCyc: PWY-6749;KEGG: 00520+5.4.2.10 "CMP-legionaminate biosynthesis I";"Amino sugar and nucleotide sugar metabolism" maker-scaffold1500-size481877-augustus-gene-2.5-mRNA-1 12 MetaCyc: PWY-7294;MetaCyc: PWY-7295;MetaCyc: PWY-6728;KEGG: 00720+4.1.3.25;KEGG: 00660+4.1.3.25;MetaCyc: PWY-7854;MetaCyc: PWY-6969;MetaCyc: PWY-5749;KEGG: 00620+2.3.3.9;KEGG: 00630+3.1.2.30+2.3.3.9;MetaCyc: PWY-5744;MetaCyc: PWY-7118 "D-xylose degradation IV";"L-arabinose degradation IV";"Methylaspartate cycle";"Carbon fixation pathways in prokaryotes";"C5-Branched dibasic acid metabolism";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Itaconate degradation";"Pyruvate metabolism";"Glyoxylate and dicarboxylate metabolism";"Glyoxylate assimilation";"Chitin degradation to ethanol" maker-scaffold354-size960420-augustus-gene-4.5-mRNA-1 1 Reactome: R-HSA-70221 "Glycogen breakdown (glycogenolysis)" maker-scaffold261-size1668889-augustus-gene-9.5-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold1762-size446732-augustus-gene-2.1-mRNA-1 9 Reactome: R-HSA-5674400;Reactome: R-HSA-198323;Reactome: R-HSA-111459;Reactome: R-HSA-111464;Reactome: R-HSA-111458;Reactome: R-HSA-418889;Reactome: R-HSA-9627069;Reactome: R-HSA-111463;Reactome: R-HSA-168638 "Constitutive Signaling by AKT1 E17K in Cancer";"AKT phosphorylates targets in the cytosol";"Activation of caspases through apoptosome-mediated cleavage";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"Formation of apoptosome";"Caspase activation via Dependence Receptors in the absence of ligand";"Regulation of the apoptosome activity";"SMAC (DIABLO) binds to IAPs";"NOD1/2 Signaling Pathway" augustus-scaffold1800-size438528-processed-gene-3.0-mRNA-1 6 Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-72649;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72706 "Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold5505-size158281-augustus-gene-0.10-mRNA-1 1 KEGG: 00970+6.1.1.16 "Aminoacyl-tRNA biosynthesis" maker-scaffold454-size870616-augustus-gene-6.2-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold2336-size718796-augustus-gene-6.4-mRNA-1 4 Reactome: R-HSA-446193;Reactome: R-HSA-4551295;KEGG: 00510+2.4.1.131;KEGG: 00513+2.4.1.131 "Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG11 causes ALG11-CDG (CDG-1p)";"N-Glycan biosynthesis";"Various types of N-glycan biosynthesis" maker-scaffold740-size695741-augustus-gene-5.6-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold4807-size190326-augustus-gene-0.9-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold1502-size476263-augustus-gene-3.7-mRNA-1 17 Reactome: R-HSA-69017;Reactome: R-HSA-176409;Reactome: R-HSA-176407;Reactome: R-HSA-141430;Reactome: R-HSA-174084;Reactome: R-HSA-176408;Reactome: R-HSA-983168;Reactome: R-HSA-2559582;Reactome: R-HSA-179409;Reactome: R-HSA-174048;Reactome: R-HSA-174154;Reactome: R-HSA-8853884;Reactome: R-HSA-174184;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-2467813;Reactome: R-HSA-176412 "CDK-mediated phosphorylation and removal of Cdc6";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Autodegradation of Cdh1 by Cdh1:APC/C";"Regulation of APC/C activators between G1/S and early anaphase";"Antigen processing: Ubiquitination & Proteasome degradation";"Senescence-Associated Secretory Phenotype (SASP)";"APC-Cdc20 mediated degradation of Nek2A";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC/C:Cdc20 mediated degradation of Securin";"Transcriptional Regulation by VENTX";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Separation of Sister Chromatids";"Phosphorylation of the APC/C" maker-scaffold133-size1635514-augustus-gene-14.3-mRNA-1 3 KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16 "T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation" augustus-scaffold2726-size321029-processed-gene-2.2-mRNA-1 2 Reactome: R-HSA-418890;Reactome: R-HSA-3295583 "Role of second messengers in netrin-1 signaling";"TRP channels" maker-scaffold5646-size152454-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-380270;Reactome: R-HSA-380320 "Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes" maker-scaffold8066-size83258-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-8866654;Reactome: R-HSA-9033241 "E3 ubiquitin ligases ubiquitinate target proteins";"Peroxisomal protein import" maker-scaffold3471-size261666-augustus-gene-1.4-mRNA-1 8 KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1 "Thermogenesis";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Signaling by Hippo";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Human papillomavirus infection" maker-scaffold1876-size425075-augustus-gene-3.9-mRNA-1 2 Reactome: R-HSA-196780;Reactome: R-HSA-3371599 "Biotin transport and metabolism";"Defective HLCS causes multiple carboxylase deficiency" maker-scaffold1105-size578071-augustus-gene-3.4-mRNA-1 7 Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780 "RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation" maker-scaffold2739-size325326-augustus-gene-2.2-mRNA-1 3 Reactome: R-HSA-1222556;Reactome: R-HSA-6798695;Reactome: R-HSA-1300642 "ROS and RNS production in phagocytes";"Neutrophil degranulation";"Sperm Motility And Taxes" maker-scaffold3871-size234620-augustus-gene-1.9-mRNA-1 13 Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553 "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs" maker-scaffold1372-size512020-augustus-gene-2.1-mRNA-1 16 Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764 "Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination" maker-scaffold4674-size191860-augustus-gene-0.7-mRNA-1 14 Reactome: R-HSA-75876;MetaCyc: PWY-7036;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-8041;MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-7619;MetaCyc: PWY-7602;MetaCyc: PWY-5972;MetaCyc: PWY-7601;MetaCyc: PWY-5080;MetaCyc: PWY-6433;MetaCyc: PWY-6598 "Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis II";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Juniperonate biosynthesis";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis" maker-scaffold2273-size380119-augustus-gene-2.5-mRNA-1 2 KEGG: 00970+6.1.1.20;Reactome: R-HSA-379716 "Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation" maker-scaffold1894-size421261-augustus-gene-1.1-mRNA-1 57 Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-5689880;Reactome: R-HSA-1169091;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-75815;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-1236978;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-211733;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5689603 "ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Ub-specific processing proteases";"Activation of NF-kappaB in B cells";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"ER-Phagosome pathway";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Ubiquitin-dependent degradation of Cyclin D";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"Cross-presentation of soluble exogenous antigens (endosomes)";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"UCH proteinases" maker-scaffold3206-size284265-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-8876198;Reactome: R-HSA-6811438;Reactome: R-HSA-6811440 "RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network" maker-scaffold5070-size178579-augustus-gene-0.15-mRNA-1 6 Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444 "EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" maker-scaffold1237-size542239-augustus-gene-3.2-mRNA-1 3 KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16 "Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway" maker-scaffold3919-size232718-augustus-gene-1.2-mRNA-1 6 KEGG: 00520+2.7.7.12;MetaCyc: PWY-6527;MetaCyc: PWY-6317;Reactome: R-HSA-5609978;KEGG: 00052+2.7.7.12;Reactome: R-HSA-70370 "Amino sugar and nucleotide sugar metabolism";"Stachyose degradation";"D-galactose degradation I (Leloir pathway)";"Defective GALT can cause Galactosemia";"Galactose metabolism";"Galactose catabolism" maker-scaffold7987-size83215-augustus-gene-0.8-mRNA-1 17 KEGG: 00680+1.1.1.37;MetaCyc: PWY-5913;MetaCyc: PWY-8086;KEGG: 00720+1.1.1.37;MetaCyc: PWY-5392;MetaCyc: PWY-6728;MetaCyc: PWY-7383;KEGG: 00710+1.1.1.37;MetaCyc: PWY-561;MetaCyc: PWY-7115;KEGG: 00630+1.1.1.37;KEGG: 00020+1.1.1.37;KEGG: 00620+1.1.1.37;MetaCyc: PWY-6969;MetaCyc: PWY-1622;KEGG: 00270+1.1.1.37;MetaCyc: PWY-5690 "Methane metabolism";"Partial TCA cycle (obligate autotrophs)";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Carbon fixation pathways in prokaryotes";"Reductive TCA cycle II";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, cytosol)";"Carbon fixation in photosynthetic organisms";"Superpathway of glyoxylate cycle and fatty acid degradation";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Glyoxylate and dicarboxylate metabolism";"Citrate cycle (TCA cycle)";"Pyruvate metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Formaldehyde assimilation I (serine pathway)";"Cysteine and methionine metabolism";"TCA cycle II (plants and fungi)" maker-scaffold63-size1621153-augustus-gene-8.8-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold5443-size159984-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-5083635;Reactome: R-HSA-5173214 "Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins" maker-scaffold1654-size576866-augustus-gene-4.4-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis" augustus-scaffold4726-size191738-processed-gene-0.2-mRNA-1 13 Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339 "Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold821-size665406-augustus-gene-4.6-mRNA-1 3 MetaCyc: PWY-7511;Reactome: R-HSA-1358803;Reactome: R-HSA-983168 "Protein ubiquitination";"Downregulation of ERBB2:ERBB3 signaling";"Antigen processing: Ubiquitination & Proteasome degradation" augustus-scaffold2455-size351638-processed-gene-2.0-mRNA-1 6 KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23;MetaCyc: PWY-6807 "Galactose metabolism";"Other glycan degradation";"Glycosaminoglycan degradation";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Xyloglucan degradation II (exoglucanase)" maker-scaffold2141-size386610-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold801-size700172-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-204005 "COPII-mediated vesicle transport" augustus-scaffold20403-size11334-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold3428-size261468-augustus-gene-1.5-mRNA-1 6 KEGG: 00053+1.1.1.22;KEGG: 00520+1.1.1.22;KEGG: 00040+1.1.1.22;MetaCyc: PWY-7820;MetaCyc: PWY-7346;Reactome: R-HSA-173599 "Ascorbate and aldarate metabolism";"Amino sugar and nucleotide sugar metabolism";"Pentose and glucuronate interconversions";"Teichuronic acid biosynthesis (B. subtilis 168)";"UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)";"Formation of the active cofactor, UDP-glucuronate" maker-scaffold1553-size479171-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" augustus-scaffold490-size842106-processed-gene-7.2-mRNA-1 1 Reactome: R-HSA-1362409 "Mitochondrial iron-sulfur cluster biogenesis" maker-scaffold207-size1178031-augustus-gene-10.6-mRNA-1 4 Reactome: R-HSA-204005;Reactome: R-HSA-6798695;Reactome: R-HSA-2132295;Reactome: R-HSA-5694530 "COPII-mediated vesicle transport";"Neutrophil degranulation";"MHC class II antigen presentation";"Cargo concentration in the ER" maker-scaffold4454-size204149-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold1450-size512895-augustus-gene-2.3-mRNA-1 4 Reactome: R-HSA-947581;KEGG: 00790+4.1.99.22;MetaCyc: PWY-6823;KEGG: 00790+4.6.1.17 "Molybdenum cofactor biosynthesis";"Folate biosynthesis";"Molybdenum cofactor biosynthesis";"Folate biosynthesis" maker-scaffold1609-size465670-augustus-gene-3.5-mRNA-1 3 Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436 "Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway" augustus-scaffold4556-size200568-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" augustus-scaffold1039-size940658-processed-gene-4.4-mRNA-1 5 MetaCyc: PWY-5667;MetaCyc: PWY-7902;KEGG: 00564+1.1.1.94;MetaCyc: PWY-5981;Reactome: R-HSA-1483166 "CDP-diacylglycerol biosynthesis I";"Glucosylglycerol biosynthesis";"Glycerophospholipid metabolism";"CDP-diacylglycerol biosynthesis III";"Synthesis of PA" maker-scaffold3513-size258726-augustus-gene-0.5-mRNA-1 5 Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-159231;Reactome: R-HSA-77595;Reactome: R-HSA-73856 "mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Transport of Mature mRNA Derived from an Intronless Transcript";"Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination" augustus-scaffold4806-size283113-processed-gene-1.3-mRNA-1 2 Reactome: R-HSA-5687128;KEGG: 04150+2.7.11.24 "MAPK6/MAPK4 signaling";"mTOR signaling pathway" maker-scaffold1442-size496382-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-6799198 "Respiratory electron transport";"Complex I biogenesis" augustus-scaffold910-size624197-processed-gene-5.2-mRNA-1 2 Reactome: R-HSA-975956;Reactome: R-HSA-975957 "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold2401-size356374-augustus-gene-2.6-mRNA-1 7 Reactome: R-HSA-1483166;MetaCyc: PWY-7039;Reactome: R-HSA-1483148;MetaCyc: PWY-3561;KEGG: 00565+3.1.4.4;Reactome: R-HSA-2029485;KEGG: 00564+3.1.4.4 "Synthesis of PA";"Phosphatidate metabolism, as a signaling molecule";"Synthesis of PG";"Choline biosynthesis III";"Ether lipid metabolism";"Role of phospholipids in phagocytosis";"Glycerophospholipid metabolism" maker-scaffold8329-size72667-augustus-gene-0.5-mRNA-1 3 Reactome: R-HSA-264876;Reactome: R-HSA-5620916;Reactome: R-HSA-1445148 "Insulin processing";"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane" maker-scaffold2534-size345506-augustus-gene-1.2-mRNA-1 5 Reactome: R-HSA-68949;Reactome: R-HSA-68867;Reactome: R-HSA-69205;Reactome: R-HSA-68827;Reactome: R-HSA-68962 "Orc1 removal from chromatin";"Assembly of the pre-replicative complex";"G1/S-Specific Transcription";"CDT1 association with the CDC6:ORC:origin complex";"Activation of the pre-replicative complex" maker-scaffold3063-size314065-augustus-gene-1.2-mRNA-1 6 MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" maker-scaffold207-size1178031-augustus-gene-6.2-mRNA-1 4 Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-8866654;Reactome: R-HSA-112382 "RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"E3 ubiquitin ligases ubiquitinate target proteins";"Formation of RNA Pol II elongation complex" augustus-scaffold29250-size13587-processed-gene-0.0-mRNA-1 13 MetaCyc: PWY-4061;MetaCyc: PWY-6842;KEGG: 00980+2.5.1.18;MetaCyc: PWY-7533;Reactome: R-HSA-196836;MetaCyc: PWY-6370;KEGG: 00480+2.5.1.18+1.8.5.1;KEGG: 00983+2.5.1.18;MetaCyc: PWY-7112;KEGG: 00053+1.8.5.1;MetaCyc: PWY-2261;KEGG: 00982+2.5.1.18;Reactome: R-HSA-156590 "Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II";"Metabolism of xenobiotics by cytochrome P450";"Gliotoxin biosynthesis";"Vitamin C (ascorbate) metabolism";"Ascorbate recycling (cytosolic)";"Glutathione metabolism";"Drug metabolism - other enzymes";"4-hydroxy-2-nonenal detoxification";"Ascorbate and aldarate metabolism";"Ascorbate glutathione cycle";"Drug metabolism - cytochrome P450";"Glutathione conjugation" maker-scaffold2765-size319350-augustus-gene-1.4-mRNA-1 10 Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-5693554;Reactome: R-HSA-5693579;Reactome: R-HSA-6804756;Reactome: R-HSA-5685938;Reactome: R-HSA-3108214;Reactome: R-HSA-5693616 "HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Homologous DNA Pairing and Strand Exchange";"Regulation of TP53 Activity through Phosphorylation";"HDR through Single Strand Annealing (SSA)";"SUMOylation of DNA damage response and repair proteins";"Presynaptic phase of homologous DNA pairing and strand exchange" augustus-scaffold70148-size9357-processed-gene-0.0-mRNA-1 5 Reactome: R-HSA-977225;Reactome: R-HSA-5689877;Reactome: R-HSA-9646399;Reactome: R-HSA-5205685;Reactome: R-HSA-983168 "Amyloid fiber formation";"Josephin domain DUBs";"Aggrephagy";"Pink/Parkin Mediated Mitophagy";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold285-size1013099-augustus-gene-8.1-mRNA-1 1 Reactome: R-HSA-83936 "Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane" maker-scaffold1088-size573517-augustus-gene-4.12-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold7168-size100051-augustus-gene-0.3-mRNA-1 57 Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-6798695;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5607761;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-1169091;Reactome: R-HSA-349425;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-187577;Reactome: R-HSA-9604323 "CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"Neutrophil degranulation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Activation of NF-kappaB in B cells";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling" maker-scaffold5498-size159896-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-1221632 "Meiotic synapsis" maker-scaffold8246-size74556-augustus-gene-0.5-mRNA-1 9 Reactome: R-HSA-167162;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-73779;Reactome: R-HSA-73776;Reactome: R-HSA-167172;Reactome: R-HSA-6807505;Reactome: R-HSA-76042;Reactome: R-HSA-674695 "RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Promoter Escape";"Transcription of the HIV genome";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Pre-transcription Events" maker-scaffold2201-size380283-augustus-gene-2.7-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" maker-scaffold178-size1261748-augustus-gene-11.5-mRNA-1 1 Reactome: R-HSA-3108214 "SUMOylation of DNA damage response and repair proteins" maker-scaffold3733-size243954-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" maker-scaffold3101-size288282-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-3295583 "TRP channels" maker-scaffold1230-size543710-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" augustus-scaffold61-size1884009-processed-gene-1.0-mRNA-1 1 KEGG: 00051+4.2.1.68 "Fructose and mannose metabolism" maker-scaffold2600-size337319-augustus-gene-1.6-mRNA-1 8 Reactome: R-HSA-8950505;MetaCyc: PWY-1861;Reactome: R-HSA-6791055;Reactome: R-HSA-6791462;Reactome: R-HSA-71336;KEGG: 00030+2.2.1.2;Reactome: R-HSA-163754;MetaCyc: PWY-5723 "Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"TALDO1 deficiency: failed conversion of SH7P, GA3P to Fru(6)P, E4P";"TALDO1 deficiency: failed conversion of Fru(6)P, E4P to SH7P, GA3P";"Pentose phosphate pathway";"Pentose phosphate pathway";"Insulin effects increased synthesis of Xylulose-5-Phosphate";"Rubisco shunt" maker-scaffold4594-size200447-augustus-gene-0.4-mRNA-1 3 KEGG: 00232+1.7.3.3;KEGG: 00230+1.7.3.3;MetaCyc: PWY-5691 "Caffeine metabolism";"Purine metabolism";"Urate conversion to allantoin I" maker-scaffold3278-size277420-augustus-gene-1.3-mRNA-1 5 Reactome: R-HSA-2132295;Reactome: R-HSA-983231;Reactome: R-HSA-3371497;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878 "MHC class II antigen presentation";"Factors involved in megakaryocyte development and platelet production";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold1686-size463981-augustus-gene-3.12-mRNA-1 1 Reactome: R-HSA-2467813 "Separation of Sister Chromatids" maker-scaffold5422-size161445-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold1788-size439088-augustus-gene-3.3-mRNA-1 4 Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-975957;Reactome: R-HSA-975956 "Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" maker-scaffold1455-size493203-augustus-gene-1.3-mRNA-1 6 Reactome: R-HSA-446199;MetaCyc: PWY-922;MetaCyc: PWY-7391;Reactome: R-HSA-191273;Reactome: R-HSA-2426168;KEGG: 00900+4.1.1.33 "Synthesis of Dolichyl-phosphate";"Mevalonate pathway I";"Isoprene biosynthesis II (engineered)";"Cholesterol biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Terpenoid backbone biosynthesis" maker-scaffold2763-size320693-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-2565942 "Regulation of PLK1 Activity at G2/M Transition" maker-scaffold3941-size236702-augustus-gene-1.13-mRNA-1 8 KEGG: 00051+5.3.1.6;MetaCyc: PWY-1861;KEGG: 00030+5.3.1.6;Reactome: R-HSA-5659996;MetaCyc: PWY-5723;Reactome: R-HSA-6791461;KEGG: 00710+5.3.1.6;Reactome: R-HSA-71336 "Fructose and mannose metabolism";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Pentose phosphate pathway";"RPIA deficiency: failed conversion of R5P to RU5P";"Rubisco shunt";"RPIA deficiency: failed conversion of RU5P to R5P";"Carbon fixation in photosynthetic organisms";"Pentose phosphate pathway" maker-scaffold4859-size185077-augustus-gene-0.2-mRNA-1 7 KEGG: 00562+2.7.1.67;Reactome: R-HSA-1660516;Reactome: R-HSA-1660499;KEGG: 04070+2.7.1.67;MetaCyc: PWY-6351;MetaCyc: PWY-6352;Reactome: R-HSA-1660514 "Inositol phosphate metabolism";"Synthesis of PIPs at the early endosome membrane";"Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol signaling system";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"3-phosphoinositide biosynthesis";"Synthesis of PIPs at the Golgi membrane" maker-scaffold5368-size161771-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-76061;Reactome: R-HSA-76066;Reactome: R-HSA-749476 "RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Abortive And Retractive Initiation" maker-scaffold278-size1024755-augustus-gene-1.4-mRNA-1 5 Reactome: R-HSA-204005;Reactome: R-HSA-6811434;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438 "COPII-mediated vesicle transport";"COPI-dependent Golgi-to-ER retrograde traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic" maker-scaffold11093-size33869-augustus-gene-0.1-mRNA-1 5 Reactome: R-HSA-75105;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-2426168 "Fatty acyl-CoA biosynthesis";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Activation of gene expression by SREBF (SREBP)" maker-scaffold1315-size524712-augustus-gene-4.2-mRNA-1 13 Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902 "Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation" maker-scaffold911-size827792-augustus-gene-3.3-mRNA-1 2 Reactome: R-HSA-9610379;Reactome: R-HSA-917729 "HCMV Late Events";"Endosomal Sorting Complex Required For Transport (ESCRT)" maker-scaffold301-size1419381-augustus-gene-13.7-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold3539-size255017-augustus-gene-1.8-mRNA-1 6 Reactome: R-HSA-68962;Reactome: R-HSA-69052;Reactome: R-HSA-176187;Reactome: R-HSA-176974;Reactome: R-HSA-68867;Reactome: R-HSA-68949 "Activation of the pre-replicative complex";"Switching of origins to a post-replicative state";"Activation of ATR in response to replication stress";"Unwinding of DNA";"Assembly of the pre-replicative complex";"Orc1 removal from chromatin" maker-scaffold1168-size645170-augustus-gene-4.1-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-6798695 "Glycosphingolipid metabolism";"Neutrophil degranulation" maker-scaffold24168-size9456-augustus-gene-0.1-mRNA-1 5 MetaCyc: PWY-7922;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7979;MetaCyc: PWY-7921;KEGG: 00514+2.4.1.109 "Protein O-mannosylation II (mammals, core M1 and core M2)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation III (mammals, core M3)";"Protein O-mannosylation I (yeast)";"Other types of O-glycan biosynthesis" maker-scaffold2370-size359433-augustus-gene-2.4-mRNA-1 5 Reactome: R-HSA-6782210;Reactome: R-HSA-72163;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-6781823 "Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Splicing - Major Pathway";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Formation of TC-NER Pre-Incision Complex" maker-scaffold2842-size325165-augustus-gene-2.3-mRNA-1 4 Reactome: R-HSA-4720489;KEGG: 00510+2.4.1.260;Reactome: R-HSA-446193;KEGG: 00513+2.4.1.260 "Defective ALG12 causes ALG12-CDG (CDG-1g)";"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Various types of N-glycan biosynthesis" maker-scaffold3710-size246941-augustus-gene-0.3-mRNA-1 4 Reactome: R-HSA-379716;KEGG: 00970+6.1.1.15;Reactome: R-HSA-379726;KEGG: 00970+6.1.1.14 "Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis" maker-scaffold807-size664707-augustus-gene-3.5-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-156827 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold5386-size162443-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-426486 "Small interfering RNA (siRNA) biogenesis" augustus-scaffold2592-size338896-processed-gene-2.2-mRNA-1 1 Reactome: R-HSA-2470946 "Cohesin Loading onto Chromatin" augustus-scaffold1122-size567286-processed-gene-4.2-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold5611-size155786-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-163765 "ChREBP activates metabolic gene expression" maker-scaffold1879-size425179-augustus-gene-3.14-mRNA-1 1 Reactome: R-HSA-8876725 "Protein methylation" maker-scaffold4917-size186850-augustus-gene-0.2-mRNA-1 5 Reactome: R-HSA-2426168;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-75105 "Activation of gene expression by SREBF (SREBP)";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Fatty acyl-CoA biosynthesis" maker-scaffold3725-size243714-augustus-gene-1.18-mRNA-1 4 Reactome: R-HSA-1799339;Reactome: R-HSA-446203;Reactome: R-HSA-879415;Reactome: R-HSA-6798695 "SRP-dependent cotranslational protein targeting to membrane";"Asparagine N-linked glycosylation";"Advanced glycosylation endproduct receptor signaling";"Neutrophil degranulation" maker-scaffold880-size639729-augustus-gene-4.2-mRNA-1 2 Reactome: R-HSA-373752;Reactome: R-HSA-525793 "Netrin-1 signaling";"Myogenesis" maker-scaffold1559-size472149-augustus-gene-3.5-mRNA-1 2 Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.24 "Lysosomal oligosaccharide catabolism";"Other glycan degradation" maker-scaffold735-size695327-augustus-gene-0.1-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis" maker-scaffold852-size1508731-augustus-gene-4.2-mRNA-1 29 Reactome: R-HSA-167172;Reactome: R-HSA-77075;Reactome: R-HSA-6781823;Reactome: R-HSA-427413;Reactome: R-HSA-6781827;Reactome: R-HSA-6782210;Reactome: R-HSA-72086;Reactome: R-HSA-167200;Reactome: R-HSA-674695;Reactome: R-HSA-75953;Reactome: R-HSA-73762;Reactome: R-HSA-167161;Reactome: R-HSA-6782135;Reactome: R-HSA-73779;Reactome: R-HSA-167158;Reactome: R-HSA-73863;Reactome: R-HSA-113418;Reactome: R-HSA-76042;Reactome: R-HSA-112382;Reactome: R-HSA-73772;Reactome: R-HSA-6796648;Reactome: R-HSA-167246;Reactome: R-HSA-167162;Reactome: R-HSA-167160;Reactome: R-HSA-5696395;Reactome: R-HSA-5696400;Reactome: R-HSA-75955;Reactome: R-HSA-73776;Reactome: R-HSA-167152 "Transcription of the HIV genome";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of TC-NER Pre-Incision Complex";"NoRC negatively regulates rRNA expression";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Capping";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Initiation";"RNA Polymerase I Transcription Initiation";"HIV Transcription Initiation";"Dual incision in TC-NER";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase I Transcription Termination";"Formation of the Early Elongation Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of RNA Pol II elongation complex";"RNA Polymerase I Promoter Escape";"TP53 Regulates Transcription of DNA Repair Genes";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II HIV Promoter Escape";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Formation of Incision Complex in GG-NER";"Dual Incision in GG-NER";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Promoter Escape";"Formation of HIV elongation complex in the absence of HIV Tat" maker-scaffold611-size755263-augustus-gene-6.1-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold1418-size704423-augustus-gene-5.2-mRNA-1 5 Reactome: R-HSA-73863;Reactome: R-HSA-73762;Reactome: R-HSA-5250924;Reactome: R-HSA-73772;Reactome: R-HSA-427413 "RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase I Promoter Escape";"NoRC negatively regulates rRNA expression" maker-scaffold4798-size188351-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold6437-size122725-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-8963889 "Assembly of active LPL and LIPC lipase complexes" maker-scaffold195-size1135307-augustus-gene-5.8-mRNA-1 4 MetaCyc: PWY-7285;MetaCyc: PWY-7286;MetaCyc: PWY-6829;Reactome: R-HSA-6782315 "Methylwyosine biosynthesis";"7-(3-amino-3-carboxypropyl)-wyosine biosynthesis";"Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol" maker-scaffold8958-size61950-augustus-gene-0.3-mRNA-1 3 MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2;KEGG: 00740+3.1.3.2 "Phosphate acquisition";"Thiamine metabolism";"Riboflavin metabolism" maker-scaffold2457-size357336-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold63-size1621153-augustus-gene-8.10-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold751-size915585-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" augustus-scaffold3759-size242232-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-5689896 "Ovarian tumor domain proteases" maker-scaffold2665-size465952-augustus-gene-1.4-mRNA-1 7 MetaCyc: PWY-5466;MetaCyc: PWY-7445;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5469 "Matairesinol biosynthesis";"Luteolin triglucuronide degradation";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Sesamin biosynthesis" maker-scaffold16-size2099125-augustus-gene-8.3-mRNA-1 1 Reactome: R-HSA-5693571 "Nonhomologous End-Joining (NHEJ)" maker-scaffold2606-size335547-augustus-gene-1.3-mRNA-1 4 Reactome: R-HSA-1799339;Reactome: R-HSA-400511;Reactome: R-HSA-381771;Reactome: R-HSA-422085 "SRP-dependent cotranslational protein targeting to membrane";"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"Synthesis, secretion, and deacylation of Ghrelin" maker-scaffold6204-size128834-augustus-gene-0.3-mRNA-1 5 MetaCyc: PWY-3821;MetaCyc: PWY-6527;KEGG: 00520+2.7.1.6;MetaCyc: PWY-6317;KEGG: 00052+2.7.1.6 "D-galactose detoxification";"Stachyose degradation";"Amino sugar and nucleotide sugar metabolism";"D-galactose degradation I (Leloir pathway)";"Galactose metabolism" augustus-scaffold360-size947325-processed-gene-0.0-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold337-size964764-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold2766-size345655-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-425381 "Bicarbonate transporters" maker-scaffold32352-size15834-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-8964038 "Neutrophil degranulation";"LDL clearance" maker-scaffold1605-size469401-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" augustus-scaffold1966-size413091-processed-gene-1.0-mRNA-1 27 Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-9609690;Reactome: R-HSA-191859;Reactome: R-HSA-159227;Reactome: R-HSA-4551638;Reactome: R-HSA-5619107;Reactome: R-HSA-165054;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-159230;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-168325;Reactome: R-HSA-159231;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-4085377 "SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"HCMV Early Events";"snRNP Assembly";"Transport of the SLBP independent Mature mRNA";"SUMOylation of chromatin organization proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Rev-mediated nuclear export of HIV RNA";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of the SLBP Dependant Mature mRNA";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"Viral Messenger RNA Synthesis";"Transport of Mature mRNA Derived from an Intronless Transcript";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"SUMOylation of SUMOylation proteins" maker-scaffold3682-size246207-augustus-gene-1.10-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold7023-size104343-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-112311;Reactome: R-HSA-1483191;Reactome: R-HSA-422085 "Neurotransmitter clearance";"Synthesis of PC";"Synthesis, secretion, and deacylation of Ghrelin" maker-scaffold3297-size274863-augustus-gene-1.6-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold3562-size254441-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold1060-size580588-augustus-gene-3.1-mRNA-1 8 KEGG: 00240+2.7.4.9;MetaCyc: PWY-7210;MetaCyc: PWY-6545;MetaCyc: PWY-7197;MetaCyc: PWY-7198;MetaCyc: PWY-7184;Reactome: R-HSA-499943;MetaCyc: PWY-7187 "Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotide phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis II" maker-scaffold4724-size192311-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-8854214 "TBC/RABGAPs" maker-scaffold135-size1795185-augustus-gene-9.1-mRNA-1 7 Reactome: R-HSA-389661;Reactome: R-HSA-5362517;KEGG: 00620+1.2.4.1;KEGG: 00010+1.2.4.1;Reactome: R-HSA-204174;Reactome: R-HSA-70268;KEGG: 00020+1.2.4.1 "Glyoxylate metabolism and glycine degradation";"Signaling by Retinoic Acid";"Pyruvate metabolism";"Glycolysis / Gluconeogenesis";"Regulation of pyruvate dehydrogenase (PDH) complex";"Pyruvate metabolism";"Citrate cycle (TCA cycle)" maker-scaffold3965-size425434-augustus-gene-2.6-mRNA-1 5 MetaCyc: PWY-6855;MetaCyc: PWY-5514;MetaCyc: PWY-6906;KEGG: 00520+3.5.99.6;Reactome: R-HSA-70171 "Chitin degradation I (archaea)";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Chitin derivatives degradation";"Amino sugar and nucleotide sugar metabolism";"Glycolysis" augustus-scaffold5075-size176695-processed-gene-0.0-mRNA-1 6 Reactome: R-HSA-68949;Reactome: R-HSA-68867;Reactome: R-HSA-176974;Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68962 "Orc1 removal from chromatin";"Assembly of the pre-replicative complex";"Unwinding of DNA";"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Activation of the pre-replicative complex" maker-scaffold4288-size255962-augustus-gene-0.1-mRNA-1 7 Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-6811434 "Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold6276-size138822-augustus-gene-0.3-mRNA-1 16 Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-72695 "Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex" maker-scaffold813-size665152-augustus-gene-5.1-mRNA-1 5 KEGG: 04150+2.7.11.24;Reactome: R-HSA-4420097;Reactome: R-HSA-168638;Reactome: R-HSA-171007;Reactome: R-HSA-376172 "mTOR signaling pathway";"VEGFA-VEGFR2 Pathway";"NOD1/2 Signaling Pathway";"p38MAPK events";"DSCAM interactions" maker-scaffold3379-size272277-augustus-gene-1.6-mRNA-1 6 Reactome: R-HSA-9640463;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884 "Wax biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I" maker-scaffold1111-size569000-augustus-gene-0.3-mRNA-1 5 Reactome: R-HSA-111457;Reactome: R-HSA-9627069;Reactome: R-HSA-111464;Reactome: R-HSA-111463;Reactome: R-HSA-111469 "Release of apoptotic factors from the mitochondria";"Regulation of the apoptosome activity";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"SMAC (DIABLO) binds to IAPs";"SMAC, XIAP-regulated apoptotic response" maker-scaffold1453-size499979-augustus-gene-3.7-mRNA-1 5 Reactome: R-HSA-9029558;Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-2426168;Reactome: R-HSA-75105 "NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis" maker-scaffold262-size1038541-augustus-gene-7.4-mRNA-1 2 Reactome: R-HSA-1483152;Reactome: R-HSA-1483115 "Hydrolysis of LPE";"Hydrolysis of LPC" augustus-scaffold298-size1000112-processed-gene-7.1-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold1176-size556212-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-2564830 "Cytosolic iron-sulfur cluster assembly" maker-scaffold942-size1057814-augustus-gene-9.7-mRNA-1 2 Reactome: R-HSA-5357905;Reactome: R-HSA-5357956 "Regulation of TNFR1 signaling";"TNFR1-induced NFkappaB signaling pathway" augustus-scaffold1423-size500547-processed-gene-4.0-mRNA-1 33 Reactome: R-HSA-5578749;Reactome: R-HSA-2500257;Reactome: R-HSA-159230;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-6784531;Reactome: R-HSA-180910;Reactome: R-HSA-4615885;Reactome: R-HSA-168333;Reactome: R-HSA-9648025;Reactome: R-HSA-165054;Reactome: R-HSA-4551638;Reactome: R-HSA-9609690;Reactome: R-HSA-3371453;Reactome: R-HSA-5663220;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168325;Reactome: R-HSA-1169408;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-2467813;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142;Reactome: R-HSA-68877;Reactome: R-HSA-5619107;Reactome: R-HSA-159227;Reactome: R-HSA-191859 "Transcriptional regulation by small RNAs";"Resolution of Sister Chromatid Cohesion";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"tRNA processing in the nucleus";"Vpr-mediated nuclear import of PICs";"SUMOylation of DNA replication proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"EML4 and NUDC in mitotic spindle formation";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of chromatin organization proteins";"HCMV Early Events";"Regulation of HSF1-mediated heat shock response";"RHO GTPases Activate Formins";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Viral Messenger RNA Synthesis";"ISG15 antiviral mechanism";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"Separation of Sister Chromatids";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins";"Mitotic Prometaphase";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP independent Mature mRNA";"snRNP Assembly" maker-scaffold1721-size452177-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-6799198 "Complex I biogenesis" maker-scaffold354-size960420-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-70221 "Glycogen breakdown (glycogenolysis)" maker-scaffold1437-size497722-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" maker-scaffold3199-size281887-augustus-gene-0.0-mRNA-1 3 Reactome: R-HSA-6804760;Reactome: R-HSA-191859;Reactome: R-HSA-3214858 "Regulation of TP53 Activity through Methylation";"snRNP Assembly";"RMTs methylate histone arginines" maker-scaffold1782-size444207-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold2455-size351638-augustus-gene-1.3-mRNA-1 6 KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00531+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23 "Galactose metabolism";"Other glycan degradation";"Glycosaminoglycan degradation";"Xyloglucan degradation II (exoglucanase)";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism" maker-scaffold6525-size124913-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-8964038;Reactome: R-HSA-6798695 "LDL clearance";"Neutrophil degranulation" maker-scaffold1483-size489825-augustus-gene-3.10-mRNA-1 4 MetaCyc: PWY-7250;Reactome: R-HSA-1362409;KEGG: 00730+2.8.1.7;Reactome: R-HSA-947581 "[2Fe-2S] iron-sulfur cluster biosynthesis";"Mitochondrial iron-sulfur cluster biogenesis";"Thiamine metabolism";"Molybdenum cofactor biosynthesis" maker-scaffold322-size1034455-augustus-gene-4.5-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold166-size1230825-augustus-gene-6.5-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold187-size1172215-augustus-gene-6.1-mRNA-1 1 Reactome: R-HSA-2142789 "Ubiquinol biosynthesis" maker-scaffold525-size816837-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold261-size1668889-augustus-gene-3.2-mRNA-1 3 Reactome: R-HSA-2029482;Reactome: R-HSA-4420097;Reactome: R-HSA-5663213 "Regulation of actin dynamics for phagocytic cup formation";"VEGFA-VEGFR2 Pathway";"RHO GTPases Activate WASPs and WAVEs" maker-scaffold512-size831310-augustus-gene-7.3-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis" maker-scaffold5573-size275731-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-3295583 "TRP channels" maker-scaffold3232-size279559-augustus-gene-1.1-mRNA-1 4 MetaCyc: PWY-7791;MetaCyc: PWY-5686;MetaCyc: PWY-7790;KEGG: 00240+3.5.2.3 "UMP biosynthesis III";"UMP biosynthesis I";"UMP biosynthesis II";"Pyrimidine metabolism" maker-scaffold3237-size443196-augustus-gene-3.3-mRNA-1 2 KEGG: 00627+3.6.1.7;KEGG: 00620+3.6.1.7 "Aminobenzoate degradation";"Pyruvate metabolism" maker-scaffold4736-size191207-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold2092-size408824-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-1660661 "Sphingolipid de novo biosynthesis" maker-scaffold2801-size338665-augustus-gene-0.2-mRNA-1 11 Reactome: R-HSA-110314;Reactome: R-HSA-6782210;Reactome: R-HSA-5685942;Reactome: R-HSA-5696397;Reactome: R-HSA-5656169;Reactome: R-HSA-68952;Reactome: R-HSA-68962;Reactome: R-HSA-174430;Reactome: R-HSA-5696400;Reactome: R-HSA-5651801;Reactome: R-HSA-6782135 "Recognition of DNA damage by PCNA-containing replication complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Termination of translesion DNA synthesis";"DNA replication initiation";"Activation of the pre-replicative complex";"Telomere C-strand synthesis initiation";"Dual Incision in GG-NER";"PCNA-Dependent Long Patch Base Excision Repair";"Dual incision in TC-NER" maker-scaffold3296-size275586-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold7526-size89691-augustus-gene-0.6-mRNA-1 2 KEGG: 00970+6.1.1.20;Reactome: R-HSA-379726 "Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation" maker-scaffold3885-size234489-augustus-gene-1.8-mRNA-1 2 Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold13-size2141512-augustus-gene-5.2-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" maker-scaffold1294-size527432-augustus-gene-3.2-mRNA-1 2 Reactome: R-HSA-3295583;Reactome: R-HSA-418890 "TRP channels";"Role of second messengers in netrin-1 signaling" maker-scaffold3941-size236702-augustus-gene-1.11-mRNA-1 1 Reactome: R-HSA-202733 "Cell surface interactions at the vascular wall" maker-scaffold242-size1164731-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-1989781;Reactome: R-HSA-381340 "PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation" maker-scaffold1898-size423200-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-70895 "Branched-chain amino acid catabolism" maker-scaffold2114-size395384-augustus-gene-0.2-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold2980-size303770-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold2112-size394116-augustus-gene-2.7-mRNA-1 1 KEGG: 00970+6.1.1.5 "Aminoacyl-tRNA biosynthesis" maker-scaffold110-size1407058-augustus-gene-11.1-mRNA-1 2 Reactome: R-HSA-425366;Reactome: R-HSA-1483191 "Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC" maker-scaffold45-size1886653-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold877-size639508-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-5358493 "Synthesis of diphthamide-EEF2" maker-scaffold5921-size141087-augustus-gene-0.7-mRNA-1 3 Reactome: R-HSA-73621;Reactome: R-HSA-74259;Reactome: R-HSA-196807 "Pyrimidine catabolism";"Purine catabolism";"Nicotinate metabolism" maker-scaffold541-size806597-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-8955332 "Carboxyterminal post-translational modifications of tubulin" augustus-scaffold282-size1020917-processed-gene-8.0-mRNA-1 14 MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-7601;MetaCyc: PWY-5080;MetaCyc: PWY-5972;MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-8041;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199 "Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Stearate biosynthesis I (animals)";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation" maker-scaffold5617-size155252-augustus-gene-0.3-mRNA-1 1 KEGG: 00565+3.1.1.47 "Ether lipid metabolism" maker-scaffold1825-size433936-augustus-gene-1.3-mRNA-1 13 Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902 "Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation" maker-scaffold137-size1323436-augustus-gene-6.3-mRNA-1 3 KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16 "T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation" maker-scaffold2156-size384503-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-114608 "Platelet degranulation" maker-scaffold159-size1264154-augustus-gene-5.4-mRNA-1 2 KEGG: 00340+2.1.1.22;Reactome: R-HSA-70921 "Histidine metabolism";"Histidine catabolism" maker-scaffold3573-size258212-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-9603798;Reactome: R-HSA-1369062 "Class I peroxisomal membrane protein import";"ABC transporters in lipid homeostasis" maker-scaffold1935-size417190-augustus-gene-0.3-mRNA-1 3 Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436 "Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway" maker-scaffold2975-size300084-augustus-gene-0.1-mRNA-1 14 MetaCyc: PWY-5972;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-7619;MetaCyc: PWY-7602;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-8041;MetaCyc: PWY-7725;MetaCyc: PWY-7035;Reactome: R-HSA-75876;MetaCyc: PWY-7036 "Stearate biosynthesis I (animals)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Juniperonate biosynthesis";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis II" maker-scaffold929-size627189-augustus-gene-3.2-mRNA-1 13 Reactome: R-HSA-2160916;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2022857;Reactome: R-HSA-2024101;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7883;KEGG: 00520+3.2.1.52;KEGG: 00603+3.2.1.52;KEGG: 00531+3.2.1.52;KEGG: 00604+3.2.1.52;Reactome: R-HSA-1660662;MetaCyc: PWY-7822;MetaCyc: PWY-6902 "Hyaluronan uptake and degradation";"Various types of N-glycan biosynthesis";"Keratan sulfate degradation";"CS/DS degradation";"Other glycan degradation";"Anhydromuropeptides recycling II";"Amino sugar and nucleotide sugar metabolism";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid metabolism";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)" maker-scaffold1454-size494852-augustus-gene-3.3-mRNA-1 2 Reactome: R-HSA-5682910;Reactome: R-HSA-5250971 "LGI-ADAM interactions";"Toxicity of botulinum toxin type C (BoNT/C)" maker-scaffold165-size1233282-augustus-gene-9.2-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold1654-size576866-augustus-gene-4.7-mRNA-1 6 MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782 "Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis" maker-scaffold356-size1275737-augustus-gene-2.1-mRNA-1 6 Reactome: R-HSA-389957;Reactome: R-HSA-5620922;Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-390471;Reactome: R-HSA-6814122 "Prefoldin mediated transfer of substrate to CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding" maker-scaffold482-size2148092-augustus-gene-11.3-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold2780-size315975-augustus-gene-2.5-mRNA-1 5 Reactome: R-HSA-77595;Reactome: R-HSA-73856;Reactome: R-HSA-72163;Reactome: R-HSA-159231;Reactome: R-HSA-72187 "Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination";"mRNA Splicing - Major Pathway";"Transport of Mature mRNA Derived from an Intronless Transcript";"mRNA 3'-end processing" maker-scaffold8618-size66642-augustus-gene-0.2-mRNA-1 2 KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788 "Starch and sucrose metabolism";"Cellulose degradation II (fungi)" maker-scaffold2850-size314421-augustus-gene-2.3-mRNA-1 4 KEGG: 00520+3.2.1.14;MetaCyc: PWY-6902;MetaCyc: PWY-7822;MetaCyc: PWY-6855 "Amino sugar and nucleotide sugar metabolism";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Chitin degradation I (archaea)" maker-scaffold3409-size265461-augustus-gene-1.7-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold908-size631064-augustus-gene-5.4-mRNA-1 8 Reactome: R-HSA-174430;Reactome: R-HSA-174411;Reactome: R-HSA-113501;Reactome: R-HSA-68962;Reactome: R-HSA-69091;Reactome: R-HSA-69166;Reactome: R-HSA-69183;Reactome: R-HSA-68952 "Telomere C-strand synthesis initiation";"Polymerase switching on the C-strand of the telomere";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Activation of the pre-replicative complex";"Polymerase switching";"Removal of the Flap Intermediate";"Processive synthesis on the lagging strand";"DNA replication initiation" maker-scaffold212-size1131905-augustus-gene-6.6-mRNA-1 3 Reactome: R-HSA-73856;Reactome: R-HSA-77588;Reactome: R-HSA-111367 "RNA Polymerase II Transcription Termination";"SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs";"SLBP independent Processing of Histone Pre-mRNAs" maker-scaffold4124-size220250-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold2147-size387347-augustus-gene-2.3-mRNA-1 6 Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-141444;Reactome: R-HSA-5663220 "Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins" maker-scaffold2966-size376486-augustus-gene-2.11-mRNA-1 5 MetaCyc: PWY-7177;MetaCyc: PWY-7185;MetaCyc: PWY-7176;KEGG: 00240+6.3.4.2;Reactome: R-HSA-499943 "UTP and CTP dephosphorylation II";"UTP and CTP dephosphorylation I";"UTP and CTP de novo biosynthesis";"Pyrimidine metabolism";"Interconversion of nucleotide di- and triphosphates" augustus-scaffold6526-size120907-processed-gene-0.0-mRNA-1 7 MetaCyc: PWY-6385;MetaCyc: PWY-6470;Reactome: R-HSA-446193;KEGG: 00550+2.4.1.227;Reactome: R-HSA-5633231;MetaCyc: PWY-6471;MetaCyc: PWY-5265 "Peptidoglycan biosynthesis III (mycobacteria)";"Peptidoglycan biosynthesis V (beta-lactam resistance)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Peptidoglycan biosynthesis";"Defective ALG14 causes congenital myasthenic syndrome (ALG14-CMS)";"Peptidoglycan biosynthesis IV (Enterococcus faecium)";"Peptidoglycan biosynthesis II (staphylococci)" maker-scaffold2949-size303001-augustus-gene-2.3-mRNA-1 9 Reactome: R-HSA-69656;Reactome: R-HSA-69205;Reactome: R-HSA-2173796;Reactome: R-HSA-1362300;Reactome: R-HSA-6804114;Reactome: R-HSA-1362277;Reactome: R-HSA-69231;Reactome: R-HSA-69202;Reactome: R-HSA-1538133 "Cyclin A:Cdk2-associated events at S phase entry";"G1/S-Specific Transcription";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Transcription of E2F targets under negative control by DREAM complex";"Cyclin D associated events in G1";"Cyclin E associated events during G1/S transition";"G0 and Early G1" augustus-scaffold1274-size909209-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-380270;Reactome: R-HSA-380320 "Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes" maker-scaffold3279-size272368-augustus-gene-1.6-mRNA-1 7 Reactome: R-HSA-8964208;KEGG: 00400+1.14.16.1;MetaCyc: PWY-6134;MetaCyc: PWY-7158;KEGG: 00790+1.14.16.1;KEGG: 00360+1.14.16.1;Reactome: R-HSA-2160456 "Phenylalanine metabolism";"Phenylalanine, tyrosine and tryptophan biosynthesis";"L-tyrosine biosynthesis IV";"L-phenylalanine degradation V";"Folate biosynthesis";"Phenylalanine metabolism";"Phenylketonuria" maker-scaffold4011-size227937-augustus-gene-1.2-mRNA-1 11 Reactome: R-HSA-111459;Reactome: R-HSA-111457;Reactome: R-HSA-111464;Reactome: R-HSA-111458;Reactome: R-HSA-1268020;Reactome: R-HSA-2151201;Reactome: R-HSA-5628897;Reactome: R-HSA-611105;Reactome: R-HSA-3299685;Reactome: R-HSA-111463;Reactome: R-HSA-9627069 "Activation of caspases through apoptosome-mediated cleavage";"Release of apoptotic factors from the mitochondria";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"Formation of apoptosome";"Mitochondrial protein import";"Transcriptional activation of mitochondrial biogenesis";"TP53 Regulates Metabolic Genes";"Respiratory electron transport";"Detoxification of Reactive Oxygen Species";"SMAC (DIABLO) binds to IAPs";"Regulation of the apoptosome activity" maker-scaffold2416-size354095-augustus-gene-2.3-mRNA-1 4 Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712;Reactome: R-HSA-1222556 "Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport";"ROS and RNS production in phagocytes" maker-scaffold2691-size760543-augustus-gene-6.12-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold518-size822057-augustus-gene-7.2-mRNA-1 1 KEGG: 00970+6.3.5.7 "Aminoacyl-tRNA biosynthesis" maker-scaffold6182-size131637-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-1483148 "Synthesis of PG" maker-scaffold1039-size940658-augustus-gene-4.5-mRNA-1 8 Reactome: R-HSA-2565942;Reactome: R-HSA-380320;Reactome: R-HSA-8854518;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380259;Reactome: R-HSA-6798695 "Regulation of PLK1 Activity at G2/M Transition";"Recruitment of NuMA to mitotic centrosomes";"AURKA Activation by TPX2";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of Nlp from mitotic centrosomes";"Neutrophil degranulation" maker-scaffold6112-size133595-augustus-gene-0.6-mRNA-1 2 KEGG: 00511+3.2.1.24;Reactome: R-HSA-8853383 "Other glycan degradation";"Lysosomal oligosaccharide catabolism" augustus-scaffold3513-size258726-processed-gene-1.3-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold916-size786007-augustus-gene-3.2-mRNA-1 4 KEGG: 00514+2.4.1.255;Reactome: R-HSA-3214847;MetaCyc: PWY-7437;Reactome: R-HSA-5689603 "Other types of O-glycan biosynthesis";"HATs acetylate histones";"Protein O-[N-acetyl]-glucosylation";"UCH proteinases" maker-scaffold1041-size588988-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold6271-size138326-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-5083635;Reactome: R-HSA-5173214 "Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins" maker-scaffold374-size1250254-augustus-gene-0.0-mRNA-1 2 Reactome: R-HSA-2408522;Reactome: R-HSA-379716 "Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation" maker-scaffold3843-size237991-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold17325-size29715-augustus-gene-0.1-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold99-size1431018-augustus-gene-9.4-mRNA-1 8 Reactome: R-HSA-975957;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1 "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection" maker-scaffold2378-size361371-augustus-gene-0.3-mRNA-1 10 MetaCyc: PWY-7112;MetaCyc: PWY-7559;MetaCyc: PWY-8001;KEGG: 00460+2.3.2.2;MetaCyc: PWY-5826;MetaCyc: PWY-4041;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-6842;MetaCyc: PWY-4061;KEGG: 00430+2.3.2.2 "4-hydroxy-2-nonenal detoxification";"Glutathione degradation (DUG pathway";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Cyanoamino acid metabolism";"Hypoglycin biosynthesis";"Gamma-glutamyl cycle";"Glutathione metabolism";"Glutathione-mediated detoxification II";"Glutathione-mediated detoxification I";"Taurine and hypotaurine metabolism" maker-scaffold5037-size178593-augustus-gene-0.5-mRNA-1 1 KEGG: 00970+6.1.1.2 "Aminoacyl-tRNA biosynthesis" augustus-scaffold2576-size340169-processed-gene-2.8-mRNA-1 6 MetaCyc: PWY-6368;KEGG: 00562+3.1.3.66;Reactome: R-HSA-1660499;KEGG: 04070+3.1.3.66;Reactome: R-HSA-1660516;Reactome: R-HSA-1855183 "3-phosphoinositide degradation";"Inositol phosphate metabolism";"Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol signaling system";"Synthesis of PIPs at the early endosome membrane";"Synthesis of IP2, IP, and Ins in the cytosol" maker-scaffold3185-size282763-augustus-gene-1.5-mRNA-1 11 Reactome: R-HSA-167290;Reactome: R-HSA-167287;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-167243;Reactome: R-HSA-674695;Reactome: R-HSA-167200;Reactome: R-HSA-167246;Reactome: R-HSA-6796648;Reactome: R-HSA-167238;Reactome: R-HSA-112382 "Pausing and recovery of HIV elongation";"HIV elongation arrest and recovery";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Tat-mediated HIV elongation arrest and recovery";"RNA Polymerase II Pre-transcription Events";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Tat-mediated elongation of the HIV-1 transcript";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of RNA Pol II elongation complex" maker-scaffold241-size1969003-augustus-gene-17.4-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold1380-size513153-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-2022854;Reactome: R-HSA-975577 "Keratan sulfate biosynthesis";"N-Glycan antennae elongation" maker-scaffold1797-size437762-augustus-gene-2.2-mRNA-1 2 MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4 "Cellulose degradation II (fungi)";"Starch and sucrose metabolism" maker-scaffold4230-size232931-augustus-gene-1.9-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-9020702 "Neutrophil degranulation";"Interleukin-1 signaling" maker-scaffold150-size1463095-augustus-gene-6.1-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold8509-size73075-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold214-size1117821-augustus-gene-7.3-mRNA-1 2 Reactome: R-HSA-389661;Reactome: R-HSA-9033241 "Glyoxylate metabolism and glycine degradation";"Peroxisomal protein import" maker-scaffold265-size1040580-augustus-gene-9.5-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" augustus-scaffold12016-size42508-processed-gene-0.0-mRNA-1 24 Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-9609690;Reactome: R-HSA-6807878;Reactome: R-HSA-6811436;Reactome: R-HSA-8852276;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-1445148 "Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"HCMV Early Events";"COPI-mediated anterograde transport";"COPI-independent Golgi-to-ER retrograde traffic";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane" maker-scaffold165-size1233282-augustus-gene-9.1-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" maker-scaffold998-size601824-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-1236974;Reactome: R-HSA-1799339 "ER-Phagosome pathway";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold9783-size47438-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-163765 "ChREBP activates metabolic gene expression" maker-scaffold2683-size524265-augustus-gene-2.2-mRNA-1 7 Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76066;Reactome: R-HSA-76071;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780 "RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation" maker-scaffold1438-size521017-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-5578998;Reactome: R-HSA-174403 "Defective OPLAH causes 5-oxoprolinase deficiency (OPLAHD)";"Glutathione synthesis and recycling" maker-scaffold4880-size183423-augustus-gene-0.9-mRNA-1 4 Reactome: R-HSA-6807047;KEGG: 00100+1.3.1.72;MetaCyc: PWY-8026;Reactome: R-HSA-6807062 "Cholesterol biosynthesis via desmosterol";"Steroid biosynthesis";"Sterol biosynthesis (methylotrophs)";"Cholesterol biosynthesis via lathosterol" maker-scaffold5971-size140842-augustus-gene-0.2-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold4876-size182805-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" augustus-scaffold388-size919400-processed-gene-4.0-mRNA-1 1 Reactome: R-HSA-6803207 "TP53 Regulates Transcription of Caspase Activators and Caspases" maker-scaffold788-size680211-augustus-gene-5.6-mRNA-1 1 Reactome: R-HSA-5693565 "Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks" maker-scaffold6235-size130462-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-2132295;Reactome: R-HSA-877300 "MHC class II antigen presentation";"Interferon gamma signaling" maker-scaffold230-size1089831-augustus-gene-9.8-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold1400-size508774-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-1663150 "Glycosphingolipid metabolism";"The activation of arylsulfatases" maker-scaffold1630-size463965-augustus-gene-2.4-mRNA-1 10 Reactome: R-HSA-390471;Reactome: R-HSA-6814122;Reactome: R-HSA-389957;Reactome: R-HSA-389960;Reactome: R-HSA-390450;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-9639288 "Association of TriC/CCT with target proteins during biosynthesis";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Prefoldin mediated transfer of substrate to CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Folding of actin by CCT/TriC";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"ROS and RNS production in phagocytes";"Ion channel transport";"Amino acids regulate mTORC1" maker-scaffold4830-size336221-augustus-gene-2.15-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold133-size1635514-augustus-gene-2.6-mRNA-1 3 Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436 "Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway" maker-scaffold301-size1419381-augustus-gene-13.6-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold4143-size225951-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-977225;Reactome: R-HSA-8854214 "Amyloid fiber formation";"TBC/RABGAPs" maker-scaffold449-size890969-augustus-gene-7.6-mRNA-1 3 Reactome: R-HSA-8963693;KEGG: 00460+3.5.1.1;KEGG: 00250+3.5.1.1 "Aspartate and asparagine metabolism";"Cyanoamino acid metabolism";"Alanine, aspartate and glutamate metabolism" maker-scaffold670-size723751-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-373080;Reactome: R-HSA-3238698 "Class B/2 (Secretin family receptors)";"WNT ligand biogenesis and trafficking" maker-scaffold735-size695327-augustus-gene-5.5-mRNA-1 12 Reactome: R-HSA-2644606;Reactome: R-HSA-210744;Reactome: R-HSA-2894862;Reactome: R-HSA-9013695;Reactome: R-HSA-73762;Reactome: R-HSA-2122947;Reactome: R-HSA-9013508;Reactome: R-HSA-1912408;Reactome: R-HSA-350054;Reactome: R-HSA-8941856;Reactome: R-HSA-5250924;Reactome: R-HSA-3214847 "Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH4 Intracellular Domain Regulates Transcription";"RNA Polymerase I Transcription Initiation";"NOTCH1 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"Pre-NOTCH Transcription and Translation";"Notch-HLH transcription pathway";"RUNX3 regulates NOTCH signaling";"B-WICH complex positively regulates rRNA expression";"HATs acetylate histones" maker-scaffold1116-size571106-augustus-gene-2.4-mRNA-1 7 Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-166208;Reactome: R-HSA-5628897;Reactome: R-HSA-8943724;Reactome: R-HSA-165159;Reactome: R-HSA-1632852 "Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"mTORC1-mediated signalling";"TP53 Regulates Metabolic Genes";"Regulation of PTEN gene transcription";"mTOR signalling";"Macroautophagy" maker-scaffold2080-size711383-augustus-gene-2.7-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold239-size1232469-augustus-gene-4.5-mRNA-1 4 KEGG: 00260+4.2.1.22;MetaCyc: PWY-801;Reactome: R-HSA-1614603;KEGG: 00270+4.2.1.22 "Glycine, serine and threonine metabolism";"Homocysteine and cysteine interconversion";"Cysteine formation from homocysteine";"Cysteine and methionine metabolism" maker-scaffold924-size626789-augustus-gene-2.2-mRNA-1 2 KEGG: 00500+3.2.1.28;Reactome: R-HSA-189085 "Starch and sucrose metabolism";"Digestion of dietary carbohydrate" maker-scaffold15439-size15642-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold1088-size573517-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold912-size649887-augustus-gene-4.3-mRNA-1 9 Reactome: R-HSA-6782210;Reactome: R-HSA-6781827;Reactome: R-HSA-110314;Reactome: R-HSA-6781823;Reactome: R-HSA-5696394;Reactome: R-HSA-5696395;Reactome: R-HSA-6782135;Reactome: R-HSA-5696400;Reactome: R-HSA-8951664 "Gap-filling DNA repair synthesis and ligation in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Recognition of DNA damage by PCNA-containing replication complex";"Formation of TC-NER Pre-Incision Complex";"DNA Damage Recognition in GG-NER";"Formation of Incision Complex in GG-NER";"Dual incision in TC-NER";"Dual Incision in GG-NER";"Neddylation" maker-scaffold12945-size29189-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold2691-size760543-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-162791 "Attachment of GPI anchor to uPAR" augustus-scaffold10351-size38533-processed-gene-0.2-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" maker-scaffold6814-size110242-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold834-size662711-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold4724-size192311-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-6811434 "Neutrophil degranulation";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold2833-size313339-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold3050-size293356-augustus-gene-1.3-mRNA-1 3 Reactome: R-HSA-2022928;KEGG: 00534+5.1.3.17;MetaCyc: PWY-6558 "HS-GAG biosynthesis";"Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"Heparan sulfate biosynthesis (late stages)" maker-scaffold818-size662412-augustus-gene-3.4-mRNA-1 24 Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-8955332;Reactome: R-HSA-380320;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-9619483;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257;Reactome: R-HSA-5663220;Reactome: R-HSA-983189 "COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"HCMV Early Events";"Gap junction assembly";"Cilium Assembly";"Carboxyterminal post-translational modifications of tubulin";"Recruitment of NuMA to mitotic centrosomes";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Activation of AMPK downstream of NMDARs";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion";"RHO GTPases Activate Formins";"Kinesins" maker-scaffold8108-size82098-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold4584-size199552-augustus-gene-0.3-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold3340-size269803-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-5693607 "Processing of DNA double-strand break ends" maker-scaffold639-size738057-augustus-gene-2.1-mRNA-1 6 MetaCyc: PWY-5381;KEGG: 00760+6.3.5.1;MetaCyc: PWY-5653;Reactome: R-HSA-196807;MetaCyc: PWY-7761;KEGG: 00760+6.3.1.5 "Pyridine nucleotide cycling (plants)";"Nicotinate and nicotinamide metabolism";"NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde";"Nicotinate metabolism";"NAD salvage pathway II (PNC IV cycle)";"Nicotinate and nicotinamide metabolism" maker-scaffold6700-size113373-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15 "Detoxification of Reactive Oxygen Species";"Glutathione metabolism" maker-scaffold1660-size824280-augustus-gene-3.4-mRNA-1 2 Reactome: R-HSA-9634600;KEGG: 00051+2.7.1.105+3.1.3.46 "Regulation of glycolysis by fructose 2,6-bisphosphate metabolism";"Fructose and mannose metabolism" maker-scaffold832-size653550-augustus-gene-5.10-mRNA-1 1 Reactome: R-HSA-429958 "mRNA decay by 3' to 5' exoribonuclease" maker-scaffold1226-size555396-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold821-size665406-augustus-gene-2.3-mRNA-1 3 KEGG: 00590+5.3.99.3;Reactome: R-HSA-2162123;Reactome: R-HSA-6798695 "Arachidonic acid metabolism";"Synthesis of Prostaglandins (PG) and Thromboxanes (TX)";"Neutrophil degranulation" maker-scaffold6697-size124820-augustus-gene-0.3-mRNA-1 26 Reactome: R-HSA-5621575;Reactome: R-HSA-9013695;Reactome: R-HSA-210744;Reactome: R-HSA-1368082;Reactome: R-HSA-1234158;Reactome: R-HSA-933541;Reactome: R-HSA-9013508;Reactome: R-HSA-918233;Reactome: R-HSA-3899300;Reactome: R-HSA-201722;Reactome: R-HSA-2644606;Reactome: R-HSA-3371568;Reactome: R-HSA-1989781;Reactome: R-HSA-9614657;Reactome: R-HSA-2894862;Reactome: R-HSA-8866907;Reactome: R-HSA-3134973;Reactome: R-HSA-8941856;Reactome: R-HSA-5617472;Reactome: R-HSA-3214847;Reactome: R-HSA-9617629;Reactome: R-HSA-2122947;Reactome: R-HSA-400253;Reactome: R-HSA-1912408;Reactome: R-HSA-381340;Reactome: R-HSA-9018519 "CD209 (DC-SIGN) signaling";"NOTCH4 Intracellular Domain Regulates Transcription";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"RORA activates gene expression";"Regulation of gene expression by Hypoxia-inducible Factor";"TRAF6 mediated IRF7 activation";"NOTCH3 Intracellular Domain Regulates Transcription";"TRAF3-dependent IRF activation pathway";"SUMOylation of transcription cofactors";"Formation of the beta-catenin:TCF transactivating complex";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Attenuation phase";"PPARA activates gene expression";"FOXO-mediated transcription of cell death genes";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Activation of the TFAP2 (AP-2) family of transcription factors";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production";"RUNX3 regulates NOTCH signaling";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"HATs acetylate histones";"Regulation of FOXO transcriptional activity by acetylation";"NOTCH1 Intracellular Domain Regulates Transcription";"Circadian Clock";"Pre-NOTCH Transcription and Translation";"Transcriptional regulation of white adipocyte differentiation";"Estrogen-dependent gene expression" augustus-scaffold7685-size86965-processed-gene-0.0-mRNA-1 56 Reactome: R-HSA-1234176;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-1236974;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-1169091;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-9020702;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-1236978;Reactome: R-HSA-5607761;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-4641257;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768 "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"ER-Phagosome pathway";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Activation of NF-kappaB in B cells";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Interleukin-1 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"Cross-presentation of soluble exogenous antigens (endosomes)";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of AXIN";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD" maker-scaffold1573-size471180-augustus-gene-3.5-mRNA-1 7 Reactome: R-HSA-1538133;Reactome: R-HSA-1362277;Reactome: R-HSA-69231;Reactome: R-HSA-69205;Reactome: R-HSA-6804114;Reactome: R-HSA-1362300;Reactome: R-HSA-2173796 "G0 and Early G1";"Transcription of E2F targets under negative control by DREAM complex";"Cyclin D associated events in G1";"G1/S-Specific Transcription";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription" maker-scaffold4332-size208308-augustus-gene-1.6-mRNA-1 1 KEGG: 00900+3.4.24.84 "Terpenoid backbone biosynthesis" maker-scaffold1879-size425179-augustus-gene-3.11-mRNA-1 4 Reactome: R-HSA-5696394;Reactome: R-HSA-8856825;Reactome: R-HSA-8951664;Reactome: R-HSA-6781823 "DNA Damage Recognition in GG-NER";"Cargo recognition for clathrin-mediated endocytosis";"Neddylation";"Formation of TC-NER Pre-Incision Complex" maker-scaffold5214-size169728-augustus-gene-0.8-mRNA-1 2 KEGG: 00970+6.1.1.14;Reactome: R-HSA-379716 "Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation" augustus-scaffold2271-size375816-processed-gene-2.3-mRNA-1 5 Reactome: R-HSA-3928662;Reactome: R-HSA-5218921;Reactome: R-HSA-186763;Reactome: R-HSA-5658442;Reactome: R-HSA-8849471 "EPHB-mediated forward signaling";"VEGFR2 mediated cell proliferation";"Downstream signal transduction";"Regulation of RAS by GAPs";"PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases" augustus-scaffold7144-size99967-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-6803157 "Neutrophil degranulation";"Antimicrobial peptides" maker-scaffold682-size719083-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" maker-scaffold7916-size81819-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold2028-size403285-augustus-gene-3.2-mRNA-1 1 KEGG: 04660+2.7.10.2 "T cell receptor signaling pathway" maker-scaffold31178-size7644-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold205-size1125025-augustus-gene-3.4-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold869-size1142520-augustus-gene-10.6-mRNA-1 1 Reactome: R-HSA-6811440 "Retrograde transport at the Trans-Golgi-Network" maker-scaffold221-size1110482-augustus-gene-2.0-mRNA-1 1 Reactome: R-HSA-5656169 "Termination of translesion DNA synthesis" maker-scaffold111-size1895004-augustus-gene-17.7-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold2459-size353855-augustus-gene-1.4-mRNA-1 27 Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-159227;Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-1169408;Reactome: R-HSA-4615885;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-168333;Reactome: R-HSA-3232142;Reactome: R-HSA-4085377;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-168325;Reactome: R-HSA-3371453;Reactome: R-HSA-5578749;Reactome: R-HSA-159230;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3108214;Reactome: R-HSA-3301854 "SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP independent Mature mRNA";"snRNP Assembly";"HCMV Early Events";"ISG15 antiviral mechanism";"SUMOylation of DNA replication proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of ubiquitinylation proteins";"SUMOylation of SUMOylation proteins";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Viral Messenger RNA Synthesis";"Regulation of HSF1-mediated heat shock response";"Transcriptional regulation by small RNAs";"Transport of the SLBP Dependant Mature mRNA";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"SUMOylation of DNA damage response and repair proteins";"Nuclear Pore Complex (NPC) Disassembly" maker-scaffold1005-size599153-augustus-gene-4.8-mRNA-1 1 Reactome: R-HSA-8943724 "Regulation of PTEN gene transcription" maker-scaffold80-size1512238-augustus-gene-14.2-mRNA-1 3 KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16 "T cell receptor signaling pathway";"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer" maker-scaffold14-size2124860-augustus-gene-1.1-mRNA-1 6 Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813 "EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids" maker-scaffold5527-size222667-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-9609523;Reactome: R-HSA-6798695;Reactome: R-HSA-1660661 "Insertion of tail-anchored proteins into the endoplasmic reticulum membrane";"Neutrophil degranulation";"Sphingolipid de novo biosynthesis" maker-scaffold2966-size376486-augustus-gene-2.10-mRNA-1 5 MetaCyc: PWY-7177;MetaCyc: PWY-7185;MetaCyc: PWY-7176;KEGG: 00240+6.3.4.2;Reactome: R-HSA-499943 "UTP and CTP dephosphorylation II";"UTP and CTP dephosphorylation I";"UTP and CTP de novo biosynthesis";"Pyrimidine metabolism";"Interconversion of nucleotide di- and triphosphates" augustus-scaffold775-size683473-processed-gene-1.0-mRNA-1 1 Reactome: R-HSA-5658442 "Regulation of RAS by GAPs" maker-scaffold5772-size147102-augustus-gene-0.7-mRNA-1 3 Reactome: R-HSA-74259;Reactome: R-HSA-196807;Reactome: R-HSA-73621 "Purine catabolism";"Nicotinate metabolism";"Pyrimidine catabolism" augustus-scaffold31796-size13167-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold5362-size162419-augustus-gene-0.10-mRNA-1 2 Reactome: R-HSA-174403;Reactome: R-HSA-5578998 "Glutathione synthesis and recycling";"Defective OPLAH causes 5-oxoprolinase deficiency (OPLAHD)" maker-scaffold1760-size440801-augustus-gene-2.1-mRNA-1 2 Reactome: R-HSA-8866907;Reactome: R-HSA-8866904 "Activation of the TFAP2 (AP-2) family of transcription factors";"Negative regulation of activity of TFAP2 (AP-2) family transcription factors" augustus-scaffold473-size853037-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-171319;Reactome: R-HSA-6790901 "Telomere Extension By Telomerase";"rRNA modification in the nucleus and cytosol" maker-scaffold715-size703568-augustus-gene-5.2-mRNA-1 6 MetaCyc: PWY-6363;MetaCyc: PWY-6364;MetaCyc: PWY-6362;KEGG: 00562+3.1.3.56;Reactome: R-HSA-1855183;KEGG: 04070+3.1.3.56 "D-myo-inositol (1,4,5)-trisphosphate degradation";"D-myo-inositol (1,3,4)-trisphosphate biosynthesis";"1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)";"Inositol phosphate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol";"Phosphatidylinositol signaling system" maker-scaffold941-size620313-augustus-gene-5.1-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold3456-size261737-augustus-gene-1.3-mRNA-1 16 Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-2408557 "L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis" augustus-scaffold1088-size573517-processed-gene-3.0-mRNA-1 1 Reactome: R-HSA-975957 "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" augustus-scaffold4158-size220890-processed-gene-1.3-mRNA-1 4 MetaCyc: PWY-6855;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00520+3.2.1.14 "Chitin degradation I (archaea)";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Amino sugar and nucleotide sugar metabolism" maker-scaffold61613-size9325-augustus-gene-0.0-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I" maker-scaffold218-size1199926-augustus-gene-3.5-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-5689880 "Protein ubiquitination";"Ub-specific processing proteases" maker-scaffold459-size1116651-augustus-gene-10.8-mRNA-1 2 Reactome: R-HSA-382556;Reactome: R-HSA-2142850 "ABC-family proteins mediated transport";"Hyaluronan biosynthesis and export" maker-scaffold2457-size357336-augustus-gene-2.9-mRNA-1 7 Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76071;Reactome: R-HSA-76066 "RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter" maker-scaffold1205-size548689-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold7776-size85395-augustus-gene-0.3-mRNA-1 17 Reactome: R-HSA-5693616;Reactome: R-HSA-5685938;Reactome: R-HSA-5693565;Reactome: R-HSA-6804756;Reactome: R-HSA-5685939;Reactome: R-HSA-5693554;Reactome: R-HSA-3270619;Reactome: R-HSA-69473;Reactome: R-HSA-912446;Reactome: R-HSA-5685942;Reactome: R-HSA-5693548;Reactome: R-HSA-5693579;Reactome: R-HSA-5693571;Reactome: R-HSA-5693607;Reactome: R-HSA-2559586;Reactome: R-HSA-1834949;Reactome: R-HSA-5693568 "Presynaptic phase of homologous DNA pairing and strand exchange";"HDR through Single Strand Annealing (SSA)";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Regulation of TP53 Activity through Phosphorylation";"HDR through MMEJ (alt-NHEJ)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"IRF3-mediated induction of type I IFN";"G2/M DNA damage checkpoint";"Meiotic recombination";"HDR through Homologous Recombination (HRR)";"Sensing of DNA Double Strand Breaks";"Homologous DNA Pairing and Strand Exchange";"Nonhomologous End-Joining (NHEJ)";"Processing of DNA double-strand break ends";"DNA Damage/Telomere Stress Induced Senescence";"Cytosolic sensors of pathogen-associated DNA";"Resolution of D-loop Structures through Holliday Junction Intermediates" maker-scaffold3936-size231298-augustus-gene-1.4-mRNA-1 9 KEGG: 00910+4.2.1.1;Reactome: R-HSA-1475029;MetaCyc: PWY-5744;MetaCyc: PWY-241;MetaCyc: PWY-5789;MetaCyc: PWY-5743;MetaCyc: PWY-6142;MetaCyc: PWY-7115;MetaCyc: PWY-7117 "Nitrogen metabolism";"Reversible hydration of carbon dioxide";"Glyoxylate assimilation";"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle";"3-hydroxypropanoate cycle";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"C4 photosynthetic carbon assimilation cycle, PEPCK type" maker-scaffold2419-size355437-augustus-gene-2.12-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold3777-size242356-augustus-gene-0.4-mRNA-1 2 KEGG: 00670+2.1.2.10;KEGG: 00260+2.1.2.10 "One carbon pool by folate";"Glycine, serine and threonine metabolism" augustus-scaffold1425-size501538-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold4034-size238263-augustus-gene-1.3-mRNA-1 3 KEGG: 00511+3.2.1.51;Reactome: R-HSA-6798695;MetaCyc: PWY-6807 "Other glycan degradation";"Neutrophil degranulation";"Xyloglucan degradation II (exoglucanase)" maker-scaffold1258-size535493-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-3232118;Reactome: R-HSA-3899300;Reactome: R-HSA-4090294 "SUMOylation of transcription factors";"SUMOylation of transcription cofactors";"SUMOylation of intracellular receptors" augustus-scaffold6289-size128062-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-525793 "Myogenesis" maker-scaffold5747-size178556-augustus-gene-0.4-mRNA-1 13 Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-192823 "L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation" maker-scaffold8214-size75702-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-75153 "Apoptotic execution phase" maker-scaffold4543-size202442-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold6369-size124130-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold3103-size289849-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-2022928 "HS-GAG biosynthesis" maker-scaffold48681-size4793-augustus-gene-0.1-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis" maker-scaffold2539-size563712-augustus-gene-4.5-mRNA-1 1 Reactome: R-HSA-977347 "Serine biosynthesis" maker-scaffold4956-size229648-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-389957 "Prefoldin mediated transfer of substrate to CCT/TriC" maker-scaffold2349-size502406-augustus-gene-4.5-mRNA-1 6 KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;MetaCyc: PWY-6807 "Galactose metabolism";"Other glycan degradation";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Xyloglucan degradation II (exoglucanase)" maker-scaffold781-size679013-augustus-gene-5.6-mRNA-1 2 Reactome: R-HSA-5620924;Reactome: R-HSA-5610787 "Intraflagellar transport";"Hedgehog 'off' state" maker-scaffold5270-size167834-augustus-gene-0.7-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold545-size797847-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold8525-size67842-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" augustus-scaffold45-size1886653-processed-gene-15.0-mRNA-1 2 MetaCyc: PWY-6829;Reactome: R-HSA-6782315 "Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol" maker-scaffold2192-size380452-augustus-gene-2.5-mRNA-1 3 Reactome: R-HSA-4420097;Reactome: R-HSA-5663213;Reactome: R-HSA-2029482 "VEGFA-VEGFR2 Pathway";"RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation" maker-scaffold4543-size202442-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold1439-size498697-augustus-gene-3.8-mRNA-1 2 Reactome: R-HSA-5083635;Reactome: R-HSA-5173214 "Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins" maker-scaffold5773-size266016-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" augustus-scaffold1323-size528941-processed-gene-4.4-mRNA-1 27 Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-159227;Reactome: R-HSA-9609690;Reactome: R-HSA-191859;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-168333;Reactome: R-HSA-3232142;Reactome: R-HSA-4085377;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-168325;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-3301854 "SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP independent Mature mRNA";"HCMV Early Events";"snRNP Assembly";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of ubiquitinylation proteins";"SUMOylation of SUMOylation proteins";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Viral Messenger RNA Synthesis";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly" maker-scaffold261-size1668889-augustus-gene-5.2-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold1676-size454805-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" maker-scaffold7631-size87990-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1788-size439088-augustus-gene-3.4-mRNA-1 4 Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72764;Reactome: R-HSA-9010553 "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs" maker-scaffold5259-size166161-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-430039 "mRNA Splicing - Major Pathway";"mRNA decay by 5' to 3' exoribonuclease" maker-scaffold652-size740944-augustus-gene-2.2-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold37807-size15020-augustus-gene-0.1-mRNA-1 13 Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764 "Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination" augustus-scaffold230-size1089831-processed-gene-9.1-mRNA-1 4 Reactome: R-HSA-3000170;Reactome: R-HSA-2129379;Reactome: R-HSA-216083;Reactome: R-HSA-3000178 "Syndecan interactions";"Molecules associated with elastic fibres";"Integrin cell surface interactions";"ECM proteoglycans" maker-scaffold1475-size491423-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold1384-size640529-augustus-gene-3.5-mRNA-1 11 Reactome: R-HSA-3270619;Reactome: R-HSA-5693571;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-8866654;KEGG: 04150+2.7.11.1;Reactome: R-HSA-1834949;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1 "IRF3-mediated induction of type I IFN";"Nonhomologous End-Joining (NHEJ)";"Relaxin signaling pathway";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"Thermogenesis";"E3 ubiquitin ligases ubiquitinate target proteins";"mTOR signaling pathway";"Cytosolic sensors of pathogen-associated DNA";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection" maker-scaffold4972-size179711-augustus-gene-0.3-mRNA-1 3 Reactome: R-HSA-111471;Reactome: R-HSA-9645722;Reactome: R-HSA-140837 "Apoptotic factor-mediated response";"Defective Intrinsic Pathway for Apoptosis Due to p14ARF Loss of Function";"Intrinsic Pathway of Fibrin Clot Formation" maker-scaffold1903-size425631-augustus-gene-3.9-mRNA-1 1 Reactome: R-HSA-9033241 "Peroxisomal protein import" maker-scaffold4192-size217020-augustus-gene-1.9-mRNA-1 24 Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-6811436;Reactome: R-HSA-9609690;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-9619483;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-437239 "Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"COPI-independent Golgi-to-ER retrograde traffic";"HCMV Early Events";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Kinesins";"RHO GTPases Activate Formins";"Activation of AMPK downstream of NMDARs";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1" maker-scaffold1651-size453992-augustus-gene-2.4-mRNA-1 2 MetaCyc: PWY-4261;KEGG: 00561+2.7.1.30 "Glycerol degradation I";"Glycerolipid metabolism" maker-scaffold5175-size171532-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold2201-size380283-augustus-gene-2.10-mRNA-1 1 Reactome: R-HSA-420029 "Tight junction interactions" maker-scaffold4955-size184968-augustus-gene-0.8-mRNA-1 3 Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438 "Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic" maker-scaffold608-size753027-augustus-gene-4.1-mRNA-1 3 KEGG: 00740+3.1.3.2;KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348 "Riboflavin metabolism";"Thiamine metabolism";"Phosphate acquisition" augustus-scaffold1279-size534615-processed-gene-4.4-mRNA-1 2 KEGG: 00520+5.4.2.10;MetaCyc: PWY-6749 "Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I" maker-scaffold1661-size458123-augustus-gene-3.5-mRNA-1 14 MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-7036;MetaCyc: PWY-5972;MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-7619;MetaCyc: PWY-7602 "Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis II";"Stearate biosynthesis I (animals)";"Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)" maker-scaffold99-size1431018-augustus-gene-10.2-mRNA-1 1 Reactome: R-HSA-6790901 "rRNA modification in the nucleus and cytosol" maker-scaffold6443-size121713-augustus-gene-0.3-mRNA-1 6 Reactome: R-HSA-6798695;Reactome: R-HSA-3299685;Reactome: R-HSA-9033241;Reactome: R-HSA-9615017;KEGG: 00380+1.11.1.6;KEGG: 00630+1.11.1.6 "Neutrophil degranulation";"Detoxification of Reactive Oxygen Species";"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Tryptophan metabolism";"Glyoxylate and dicarboxylate metabolism" maker-scaffold5747-size178556-augustus-gene-0.5-mRNA-1 3 MetaCyc: PWY-2161;KEGG: 00790+6.3.2.17;Reactome: R-HSA-196757 "Folate polyglutamylation";"Folate biosynthesis";"Metabolism of folate and pterines" maker-scaffold8170-size77071-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-6807505 "mRNA Splicing - Major Pathway";"RNA polymerase II transcribes snRNA genes" maker-scaffold1643-size459444-augustus-gene-2.2-mRNA-1 7 Reactome: R-HSA-5083633;Reactome: R-HSA-5083629;Reactome: R-HSA-3000178;Reactome: R-HSA-5083628;Reactome: R-HSA-5173105;Reactome: R-HSA-9010553;Reactome: R-HSA-3000171 "Defective POMT1 causes MDDGA1, MDDGB1 and MDDGC1";"Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2";"ECM proteoglycans";"Defective POMGNT1 causes MDDGA3, MDDGB3 and MDDGC3";"O-linked glycosylation";"Regulation of expression of SLITs and ROBOs";"Non-integrin membrane-ECM interactions" maker-scaffold1085-size818524-augustus-gene-4.3-mRNA-1 10 MetaCyc: PWY-8051;MetaCyc: PWY-7587;KEGG: 00561+2.3.1.15;KEGG: 00564+2.3.1.15;MetaCyc: PWY-8053;MetaCyc: PWY-5667;MetaCyc: PWY-8055;Reactome: R-HSA-1483166;MetaCyc: PWY-6453;MetaCyc: PWY-7411 "Anandamide biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Anandamide biosynthesis II";"CDP-diacylglycerol biosynthesis I";"Palmitoyl ethanolamide biosynthesis";"Synthesis of PA";"Stigma estolide biosynthesis";"Phosphatidate biosynthesis (yeast)" maker-scaffold8108-size82098-augustus-gene-0.3-mRNA-1 3 KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16 "T cell receptor signaling pathway";"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer" maker-scaffold1750-size446167-augustus-gene-0.1-mRNA-1 7 KEGG: 00680+3.1.3.11;KEGG: 00710+3.1.3.11;KEGG: 00010+3.1.3.11;KEGG: 00051+3.1.3.11;MetaCyc: PWY-5484;Reactome: R-HSA-70263;KEGG: 00030+3.1.3.11 "Methane metabolism";"Carbon fixation in photosynthetic organisms";"Glycolysis / Gluconeogenesis";"Fructose and mannose metabolism";"Glycolysis II (from fructose 6-phosphate)";"Gluconeogenesis";"Pentose phosphate pathway" maker-scaffold1074-size580161-augustus-gene-2.2-mRNA-1 2 Reactome: R-HSA-196780;Reactome: R-HSA-3371599 "Biotin transport and metabolism";"Defective HLCS causes multiple carboxylase deficiency" augustus-scaffold5962-size140490-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold15-size2120621-augustus-gene-14.2-mRNA-1 5 Reactome: R-HSA-211976;Reactome: R-HSA-2395516;Reactome: R-HSA-5579026;Reactome: R-HSA-1362409;Reactome: R-HSA-196108 "Endogenous sterols";"Electron transport from NADPH to Ferredoxin";"Defective CYP11A1 causes Adrenal insufficiency, congenital, with 46,XY sex reversal (AICSR)";"Mitochondrial iron-sulfur cluster biogenesis";"Pregnenolone biosynthesis" maker-scaffold2797-size465243-augustus-gene-3.3-mRNA-1 3 Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436 "PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway" maker-scaffold2321-size365104-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-211945 "Phase I - Functionalization of compounds" augustus-scaffold2411-size357562-processed-gene-2.2-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold2765-size319350-augustus-gene-2.7-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold799-size670284-augustus-gene-2.5-mRNA-1 14 Reactome: R-HSA-75876;MetaCyc: PWY-7036;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7725;MetaCyc: PWY-7035;MetaCyc: PWY-8041;MetaCyc: PWY-7619;MetaCyc: PWY-7602;MetaCyc: PWY-5972;MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-7601;MetaCyc: PWY-5080 "Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis II";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Juniperonate biosynthesis";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I" maker-scaffold5753-size147418-augustus-gene-0.10-mRNA-1 2 Reactome: R-HSA-204005;Reactome: R-HSA-8876198 "COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs" maker-scaffold4921-size184217-augustus-gene-0.9-mRNA-1 9 MetaCyc: PWY-7115;MetaCyc: PWY-7117;MetaCyc: PWY-5743;MetaCyc: PWY-6142;MetaCyc: PWY-241;MetaCyc: PWY-5789;KEGG: 00910+4.2.1.1;Reactome: R-HSA-1475029;MetaCyc: PWY-5744 "C4 photosynthetic carbon assimilation cycle, NAD-ME type";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"3-hydroxypropanoate cycle";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Nitrogen metabolism";"Reversible hydration of carbon dioxide";"Glyoxylate assimilation" maker-scaffold7811-size84079-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-1221632 "Meiotic synapsis" maker-scaffold2516-size463816-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-8876198;Reactome: R-HSA-204005 "RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport" maker-scaffold852-size1508731-augustus-gene-2.2-mRNA-1 3 Reactome: R-HSA-159236;Reactome: R-HSA-72187;Reactome: R-HSA-73856 "Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination" maker-scaffold2528-size345412-augustus-gene-1.10-mRNA-1 29 Reactome: R-HSA-73779;Reactome: R-HSA-6782135;Reactome: R-HSA-167161;Reactome: R-HSA-73762;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-674695;Reactome: R-HSA-72086;Reactome: R-HSA-6782210;Reactome: R-HSA-6781827;Reactome: R-HSA-427413;Reactome: R-HSA-77075;Reactome: R-HSA-167172;Reactome: R-HSA-6781823;Reactome: R-HSA-167152;Reactome: R-HSA-73776;Reactome: R-HSA-75955;Reactome: R-HSA-5696400;Reactome: R-HSA-5696395;Reactome: R-HSA-167160;Reactome: R-HSA-167162;Reactome: R-HSA-167246;Reactome: R-HSA-6796648;Reactome: R-HSA-112382;Reactome: R-HSA-76042;Reactome: R-HSA-73772;Reactome: R-HSA-113418;Reactome: R-HSA-73863;Reactome: R-HSA-167158 "RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Dual incision in TC-NER";"HIV Transcription Initiation";"RNA Polymerase I Transcription Initiation";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Pre-transcription Events";"mRNA Capping";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE";"Transcription of the HIV genome";"Formation of TC-NER Pre-Incision Complex";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Elongation";"Dual Incision in GG-NER";"Formation of Incision Complex in GG-NER";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II HIV Promoter Escape";"Tat-mediated elongation of the HIV-1 transcript";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase I Promoter Escape";"Formation of the Early Elongation Complex";"RNA Polymerase I Transcription Termination";"Formation of the HIV-1 Early Elongation Complex" maker-scaffold57-size1648567-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold155-size1267149-augustus-gene-6.19-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold3283-size276077-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-162710 "Synthesis of glycosylphosphatidylinositol (GPI)" maker-scaffold860-size649487-augustus-gene-2.3-mRNA-1 7 MetaCyc: PWY-7214;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-5466;MetaCyc: PWY-5469;KEGG: 00940+1.11.1.7;MetaCyc: PWY-6824 "Baicalein degradation (hydrogen peroxide detoxification)";"Betanidin degradation";"Luteolin triglucuronide degradation";"Matairesinol biosynthesis";"Sesamin biosynthesis";"Phenylpropanoid biosynthesis";"Justicidin B biosynthesis" maker-scaffold2850-size314421-augustus-gene-2.4-mRNA-1 5 MetaCyc: PWY-6855;Reactome: R-HSA-189085;MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00520+3.2.1.14 "Chitin degradation I (archaea)";"Digestion of dietary carbohydrate";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Amino sugar and nucleotide sugar metabolism" augustus-scaffold1088-size573517-processed-gene-4.5-mRNA-1 1 Reactome: R-HSA-5601884 "PIWI-interacting RNA (piRNA) biogenesis" maker-scaffold3632-size254775-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold3267-size278345-augustus-gene-1.3-mRNA-1 3 Reactome: R-HSA-5696400;Reactome: R-HSA-6782135;Reactome: R-HSA-5696395 "Dual Incision in GG-NER";"Dual incision in TC-NER";"Formation of Incision Complex in GG-NER" maker-scaffold528-size819583-augustus-gene-1.3-mRNA-1 7 Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-2470946;Reactome: R-HSA-3108214;Reactome: R-HSA-2468052;Reactome: R-HSA-9018519;Reactome: R-HSA-1221632 "Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin";"SUMOylation of DNA damage response and repair proteins";"Establishment of Sister Chromatid Cohesion";"Estrogen-dependent gene expression";"Meiotic synapsis" maker-scaffold1249-size530743-augustus-gene-3.5-mRNA-1 3 KEGG: 00730+3.1.3.1;MetaCyc: PWY-5491;KEGG: 00790+3.1.3.1 "Thiamine metabolism";"Diethylphosphate degradation";"Folate biosynthesis" maker-scaffold16-size2099125-augustus-gene-2.2-mRNA-1 3 KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16 "Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway" maker-scaffold487-size840725-augustus-gene-7.3-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I" maker-scaffold2969-size341277-augustus-gene-2.9-mRNA-1 2 MetaCyc: PWY-6854;Reactome: R-HSA-3299685 "Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species" maker-scaffold230-size1089831-augustus-gene-9.6-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold4082-size224628-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-430039;Reactome: R-HSA-72163 "mRNA decay by 5' to 3' exoribonuclease";"mRNA Splicing - Major Pathway" maker-scaffold5108-size174122-augustus-gene-0.5-mRNA-1 5 Reactome: R-HSA-389957;Reactome: R-HSA-389960;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-6814122 "Prefoldin mediated transfer of substrate to CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding" maker-scaffold303-size996857-augustus-gene-1.1-mRNA-1 8 KEGG: 00620+1.1.1.27;KEGG: 00640+1.1.1.27;KEGG: 00270+1.1.1.27;KEGG: 00010+1.1.1.27;MetaCyc: PWY-8086;MetaCyc: PWY-6901;Reactome: R-HSA-70268;MetaCyc: PWY-5481 "Pyruvate metabolism";"Propanoate metabolism";"Cysteine and methionine metabolism";"Glycolysis / Gluconeogenesis";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Superpathway of glucose and xylose degradation";"Pyruvate metabolism";"Pyruvate fermentation to (S)-lactate" maker-scaffold1802-size595945-augustus-gene-0.1-mRNA-1 3 MetaCyc: PWY-7803;Reactome: R-HSA-6784531;MetaCyc: PWY-6689 "Trna splicing II";"tRNA processing in the nucleus";"Trna splicing I" maker-scaffold3038-size297107-augustus-gene-1.5-mRNA-1 14 Reactome: R-HSA-9017802;Reactome: R-HSA-9013700;Reactome: R-HSA-3928665;Reactome: R-HSA-2979096;Reactome: R-HSA-193692;Reactome: R-HSA-6798695;Reactome: R-HSA-2122948;Reactome: R-HSA-977225;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-1251985;Reactome: R-HSA-9013507;Reactome: R-HSA-1474228;Reactome: R-HSA-205043 "Noncanonical activation of NOTCH3";"NOTCH4 Activation and Transmission of Signal to the Nucleus";"EPH-ephrin mediated repulsion of cells";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Regulated proteolysis of p75NTR";"Neutrophil degranulation";"Activated NOTCH1 Transmits Signal to the Nucleus";"Amyloid fiber formation";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Nuclear signaling by ERBB4";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Degradation of the extracellular matrix";"NRIF signals cell death from the nucleus" maker-scaffold1555-size469220-augustus-gene-1.6-mRNA-1 3 Reactome: R-HSA-212436;Reactome: R-HSA-1989781;Reactome: R-HSA-381340 "Generic Transcription Pathway";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation" maker-scaffold4586-size198567-augustus-gene-0.5-mRNA-1 14 Reactome: R-HSA-2565942;Reactome: R-HSA-141444;Reactome: R-HSA-380320;Reactome: R-HSA-8854518;Reactome: R-HSA-380284;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257;Reactome: R-HSA-380270;Reactome: R-HSA-2467813;Reactome: R-HSA-5620912;Reactome: R-HSA-8852276;Reactome: R-HSA-380259;Reactome: R-HSA-5663220 "Regulation of PLK1 Activity at G2/M Transition";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Recruitment of NuMA to mitotic centrosomes";"AURKA Activation by TPX2";"Loss of proteins required for interphase microtubule organization from the centrosome";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion";"Recruitment of mitotic centrosome proteins and complexes";"Separation of Sister Chromatids";"Anchoring of the basal body to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Loss of Nlp from mitotic centrosomes";"RHO GTPases Activate Formins" maker-scaffold2422-size352689-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" maker-scaffold1929-size415288-augustus-gene-2.5-mRNA-1 8 Reactome: R-HSA-191273;Reactome: R-HSA-1989781;MetaCyc: PWY-7391;MetaCyc: PWY-6174;Reactome: R-HSA-2426168;MetaCyc: PWY-922;MetaCyc: PWY-7524;KEGG: 00900+1.1.1.34 "Cholesterol biosynthesis";"PPARA activates gene expression";"Isoprene biosynthesis II (engineered)";"Mevalonate pathway II (archaea)";"Activation of gene expression by SREBF (SREBP)";"Mevalonate pathway I";"Mevalonate pathway III (archaea)";"Terpenoid backbone biosynthesis" maker-scaffold2214-size379349-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold7537-size92214-augustus-gene-0.1-mRNA-1 14 MetaCyc: PWY-5972;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7602;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-8041;MetaCyc: PWY-7035;MetaCyc: PWY-7725;Reactome: R-HSA-75876;MetaCyc: PWY-7036 "Stearate biosynthesis I (animals)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis II" maker-scaffold390-size1040929-augustus-gene-4.1-mRNA-1 3 Reactome: R-HSA-77588;Reactome: R-HSA-73856;Reactome: R-HSA-159230 "SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs";"RNA Polymerase II Transcription Termination";"Transport of the SLBP Dependant Mature mRNA" maker-scaffold7396-size93392-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold25-size3374183-augustus-gene-9.4-mRNA-1 5 Reactome: R-HSA-174490;Reactome: R-HSA-162588;Reactome: R-HSA-9610379;Reactome: R-HSA-9615710;Reactome: R-HSA-917729 "Membrane binding and targetting of GAG proteins";"Budding and maturation of HIV virion";"HCMV Late Events";"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)" maker-scaffold4955-size184968-augustus-gene-0.9-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold1498-size486925-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-429947 "Deadenylation of mRNA" maker-scaffold1323-size528941-augustus-gene-4.8-mRNA-1 27 Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-5578749;Reactome: R-HSA-168325;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-4085377;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-159227;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107 "HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"Transcriptional regulation by small RNAs";"Viral Messenger RNA Synthesis";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"SUMOylation of SUMOylation proteins";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"snRNP Assembly";"HCMV Early Events";"Transport of the SLBP independent Mature mRNA";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)" maker-scaffold846-size651511-augustus-gene-5.8-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold989-size604863-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-3214858 "RMTs methylate histone arginines" maker-scaffold1179-size556351-augustus-gene-4.6-mRNA-1 2 Reactome: R-HSA-1268020;Reactome: R-HSA-8869496 "Mitochondrial protein import";"TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation" maker-scaffold287-size1011457-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold3871-size234620-processed-gene-1.5-mRNA-1 7 Reactome: R-HSA-72649;Reactome: R-HSA-166208;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72662;Reactome: R-HSA-429947;Reactome: R-HSA-72706 "Translation initiation complex formation";"mTORC1-mediated signalling";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S";"Deadenylation of mRNA";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold5852-size160198-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-6804115;Reactome: R-HSA-429947 "TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA" maker-scaffold63-size1621153-augustus-gene-6.4-mRNA-1 1 Reactome: R-HSA-162791 "Attachment of GPI anchor to uPAR" maker-scaffold2640-size385986-augustus-gene-2.6-mRNA-1 7 Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4615885;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877 "RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of DNA replication proteins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase" maker-scaffold734-size1099370-augustus-gene-9.7-mRNA-1 2 Reactome: R-HSA-8951664;Reactome: R-HSA-983168 "Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold2488-size349548-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-203641 "NOSTRIN mediated eNOS trafficking" maker-scaffold1927-size553482-augustus-gene-2.1-mRNA-1 4 Reactome: R-HSA-3304356;Reactome: R-HSA-2173789;Reactome: R-HSA-2173788;Reactome: R-HSA-3656532 "SMAD2/3 Phosphorylation Motif Mutants in Cancer";"TGF-beta receptor signaling activates SMADs";"Downregulation of TGF-beta receptor signaling";"TGFBR1 KD Mutants in Cancer" maker-scaffold985-size604716-augustus-gene-2.3-mRNA-1 2 Reactome: R-HSA-5689603;Reactome: R-HSA-5696394 "UCH proteinases";"DNA Damage Recognition in GG-NER" maker-scaffold204-size1131059-augustus-gene-5.8-mRNA-1 11 Reactome: R-HSA-164378;Reactome: R-HSA-418597;Reactome: R-HSA-418594;Reactome: R-HSA-5610787;Reactome: R-HSA-418555;KEGG: 00230+4.6.1.1;Reactome: R-HSA-163359;Reactome: R-HSA-170660;Reactome: R-HSA-163615;Reactome: R-HSA-170670;Reactome: R-HSA-432040 "PKA activation in glucagon signalling";"G alpha (z) signalling events";"G alpha (i) signalling events";"Hedgehog 'off' state";"G alpha (s) signalling events";"Purine metabolism";"Glucagon signaling in metabolic regulation";"Adenylate cyclase activating pathway";"PKA activation";"Adenylate cyclase inhibitory pathway";"Vasopressin regulates renal water homeostasis via Aquaporins" maker-scaffold3210-size280932-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" augustus-scaffold1686-size463981-processed-gene-3.4-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold639-size738057-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-8955332 "Carboxyterminal post-translational modifications of tubulin" maker-scaffold338-size969700-augustus-gene-7.1-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold365-size940238-augustus-gene-7.4-mRNA-1 2 Reactome: R-HSA-380320;Reactome: R-HSA-380270 "Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes" maker-scaffold1580-size468971-augustus-gene-1.4-mRNA-1 8 Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-167590;Reactome: R-HSA-182218;Reactome: R-HSA-9636467 "Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Nef Mediated CD4 Down-regulation";"Nef Mediated CD8 Down-regulation";"Blockage of phagosome acidification" maker-scaffold1018-size599003-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold2412-size354967-augustus-gene-2.5-mRNA-1 3 MetaCyc: PWY-6823;KEGG: 00790+2.10.1.1;Reactome: R-HSA-947581 "Molybdenum cofactor biosynthesis";"Folate biosynthesis";"Molybdenum cofactor biosynthesis" maker-scaffold2120-size393748-augustus-gene-2.7-mRNA-1 1 Reactome: R-HSA-4085001 "Sialic acid metabolism" maker-scaffold4237-size214422-augustus-gene-1.6-mRNA-1 4 KEGG: 00230+2.7.4.3;MetaCyc: PWY-7219;Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3 "Purine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism" maker-scaffold6286-size127437-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold3775-size242977-augustus-gene-1.2-mRNA-1 5 Reactome: R-HSA-1655829;Reactome: R-HSA-983170;Reactome: R-HSA-5694530;Reactome: R-HSA-2132295;Reactome: R-HSA-204005 "Regulation of cholesterol biosynthesis by SREBP (SREBF)";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Cargo concentration in the ER";"MHC class II antigen presentation";"COPII-mediated vesicle transport" maker-scaffold3957-size238393-augustus-gene-0.2-mRNA-1 11 Reactome: R-HSA-2644606;Reactome: R-HSA-210744;Reactome: R-HSA-2894862;Reactome: R-HSA-72163;Reactome: R-HSA-9013695;Reactome: R-HSA-2122947;Reactome: R-HSA-9013508;Reactome: R-HSA-1912408;Reactome: R-HSA-350054;Reactome: R-HSA-8941856;Reactome: R-HSA-2173796 "Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"mRNA Splicing - Major Pathway";"NOTCH4 Intracellular Domain Regulates Transcription";"NOTCH1 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"Pre-NOTCH Transcription and Translation";"Notch-HLH transcription pathway";"RUNX3 regulates NOTCH signaling";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription" maker-scaffold5479-size158416-augustus-gene-0.2-mRNA-1 26 Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-389960;Reactome: R-HSA-389977;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295 "Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Formation of tubulin folding intermediates by CCT/TriC";"Post-chaperonin tubulin folding pathway";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation" maker-scaffold3651-size251455-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" augustus-scaffold7698-size86736-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold10623-size35746-processed-gene-0.2-mRNA-1 1 Reactome: R-HSA-2024096 "HS-GAG degradation" maker-scaffold4092-size224007-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-2151201;KEGG: 00970+6.1.1.14 "Transcriptional activation of mitochondrial biogenesis";"Aminoacyl-tRNA biosynthesis" maker-scaffold818-size662412-augustus-gene-1.4-mRNA-1 14 Reactome: R-HSA-8986944;Reactome: R-HSA-203927;Reactome: R-HSA-8934593;Reactome: R-HSA-426486;Reactome: R-HSA-8943723;Reactome: R-HSA-9029569;Reactome: R-HSA-426496;Reactome: R-HSA-5687128;Reactome: R-HSA-8948700;Reactome: R-HSA-4086398;Reactome: R-HSA-9022692;Reactome: R-HSA-5628897;Reactome: R-HSA-1912408;Reactome: R-HSA-9018519 "Transcriptional Regulation by MECP2";"MicroRNA (miRNA) biogenesis";"Regulation of RUNX1 Expression and Activity";"Small interfering RNA (siRNA) biogenesis";"Regulation of PTEN mRNA translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Post-transcriptional silencing by small RNAs";"MAPK6/MAPK4 signaling";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Ca2+ pathway";"Regulation of MECP2 expression and activity";"TP53 Regulates Metabolic Genes";"Pre-NOTCH Transcription and Translation";"Estrogen-dependent gene expression" maker-scaffold1712-size451175-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold398-size1440741-augustus-gene-7.4-mRNA-1 3 Reactome: R-HSA-8874081;Reactome: R-HSA-3000171;Reactome: R-HSA-3000157 "MET activates PTK2 signaling";"Non-integrin membrane-ECM interactions";"Laminin interactions" maker-scaffold780-size783175-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-203615 "eNOS activation" maker-scaffold3274-size582906-augustus-gene-4.6-mRNA-1 1 Reactome: R-HSA-373080 "Class B/2 (Secretin family receptors)" augustus-scaffold4952-size326310-processed-gene-2.1-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6784531 "Major pathway of rRNA processing in the nucleolus and cytosol";"tRNA processing in the nucleus" maker-scaffold4631-size203425-augustus-gene-1.4-mRNA-1 4 KEGG: 00230+6.3.4.4;KEGG: 00250+6.3.4.4;MetaCyc: PWY-7219;Reactome: R-HSA-73817 "Purine metabolism";"Alanine, aspartate and glutamate metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Purine ribonucleoside monophosphate biosynthesis" maker-scaffold5773-size266016-augustus-gene-1.8-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold821-size665406-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-499943 "Interconversion of nucleotide di- and triphosphates" maker-scaffold3411-size267780-augustus-gene-1.5-mRNA-1 8 MetaCyc: PWY-7979;Reactome: R-HSA-5173105;KEGG: 00515+2.4.1.109;KEGG: 00514+2.4.1.109;MetaCyc: PWY-7921;MetaCyc: PWY-7922;Reactome: R-HSA-5083633;Reactome: R-HSA-5083629 "Protein O-mannosylation III (mammals, core M3)";"O-linked glycosylation";"Mannose type O-glycan biosynthesis";"Other types of O-glycan biosynthesis";"Protein O-mannosylation I (yeast)";"Protein O-mannosylation II (mammals, core M1 and core M2)";"Defective POMT1 causes MDDGA1, MDDGB1 and MDDGC1";"Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2" maker-scaffold2877-size307340-augustus-gene-1.3-mRNA-1 3 Reactome: R-HSA-5173105;Reactome: R-HSA-5083627;Reactome: R-HSA-2022854 "O-linked glycosylation";"Defective LARGE causes MDDGA6 and MDDGB6";"Keratan sulfate biosynthesis" maker-scaffold2726-size321029-augustus-gene-2.7-mRNA-1 2 Reactome: R-HSA-418890;Reactome: R-HSA-3295583 "Role of second messengers in netrin-1 signaling";"TRP channels" maker-scaffold2797-size465243-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-381340;Reactome: R-HSA-1989781 "Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression" maker-scaffold5545-size155480-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" augustus-scaffold4563-size200556-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-380320;Reactome: R-HSA-380270 "Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes" maker-scaffold993-size639287-augustus-gene-5.2-mRNA-1 2 Reactome: R-HSA-8951664;Reactome: R-HSA-983168 "Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold234-size1071331-augustus-gene-7.3-mRNA-1 1 Reactome: R-HSA-2151201 "Transcriptional activation of mitochondrial biogenesis" maker-scaffold1746-size448251-augustus-gene-3.6-mRNA-1 14 MetaCyc: PWY-6803;Reactome: R-HSA-1482788;Reactome: R-HSA-975634;KEGG: 00590+3.1.1.4;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;MetaCyc: PWY-7416;MetaCyc: PWY-7409;MetaCyc: PWY-8053;KEGG: 00564+3.1.1.4+3.1.1.5;KEGG: 00592+3.1.1.4;MetaCyc: PWY-8051;MetaCyc: PWY-7783;KEGG: 00591+3.1.1.4 "Phosphatidylcholine acyl editing";"Acyl chain remodelling of PC";"Retinoid metabolism and transport";"Arachidonic acid metabolism";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Anandamide biosynthesis II";"Glycerophospholipid metabolism";"alpha-Linolenic acid metabolism";"Anandamide biosynthesis I";"Plasmalogen degradation";"Linoleic acid metabolism" maker-scaffold3509-size259622-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold870-size642903-augustus-gene-4.2-mRNA-1 2 Reactome: R-HSA-429947;Reactome: R-HSA-6804115 "Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" maker-scaffold1396-size507743-augustus-gene-3.3-mRNA-1 2 Reactome: R-HSA-1989781;Reactome: R-HSA-381340 "PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation" maker-scaffold3848-size237801-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-5610787 "Hedgehog 'off' state" maker-scaffold2411-size357562-augustus-gene-2.8-mRNA-1 6 Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-141444;Reactome: R-HSA-5663220 "Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins" augustus-scaffold1149-size562162-processed-gene-4.1-mRNA-1 2 Reactome: R-HSA-5357905;Reactome: R-HSA-8876198 "Regulation of TNFR1 signaling";"RAB GEFs exchange GTP for GDP on RABs" maker-scaffold6814-size110242-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold2401-size356374-augustus-gene-2.7-mRNA-1 7 KEGG: 00564+3.1.4.4;Reactome: R-HSA-2029485;KEGG: 00565+3.1.4.4;MetaCyc: PWY-3561;Reactome: R-HSA-1483148;MetaCyc: PWY-7039;Reactome: R-HSA-1483166 "Glycerophospholipid metabolism";"Role of phospholipids in phagocytosis";"Ether lipid metabolism";"Choline biosynthesis III";"Synthesis of PG";"Phosphatidate metabolism, as a signaling molecule";"Synthesis of PA" maker-scaffold415-size1042365-augustus-gene-3.2-mRNA-1 2 Reactome: R-HSA-5689896;Reactome: R-HSA-195253 "Ovarian tumor domain proteases";"Degradation of beta-catenin by the destruction complex" maker-scaffold6884-size108511-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold1534-size477546-augustus-gene-3.6-mRNA-1 3 MetaCyc: PWY-7533;Reactome: R-HSA-5423646;Reactome: R-HSA-2142691 "Gliotoxin biosynthesis";"Aflatoxin activation and detoxification";"Synthesis of Leukotrienes (LT) and Eoxins (EX)" augustus-scaffold2920-size562000-processed-gene-4.1-mRNA-1 3 Reactome: R-HSA-5250924;Reactome: R-HSA-72163;Reactome: R-HSA-72165 "B-WICH complex positively regulates rRNA expression";"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway" maker-scaffold2118-size388979-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-6783984 "Glycine degradation" maker-scaffold5508-size158961-augustus-gene-0.7-mRNA-1 5 Reactome: R-HSA-983168;Reactome: R-HSA-5205685;Reactome: R-HSA-9646399;Reactome: R-HSA-977225;Reactome: R-HSA-5689877 "Antigen processing: Ubiquitination & Proteasome degradation";"Pink/Parkin Mediated Mitophagy";"Aggrephagy";"Amyloid fiber formation";"Josephin domain DUBs" maker-scaffold302-size1133343-augustus-gene-10.2-mRNA-1 1 Reactome: R-HSA-68962 "Activation of the pre-replicative complex" maker-scaffold2214-size379349-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold2619-size342476-augustus-gene-2.1-mRNA-1 10 MetaCyc: PWY-6361;MetaCyc: PWY-6362;Reactome: R-HSA-1855191;KEGG: 00562+2.7.1.158;MetaCyc: PWY-4661;MetaCyc: PWY-6554;MetaCyc: PWY-6372;KEGG: 04070+2.7.1.158;Reactome: R-HSA-1855167;MetaCyc: PWY-6369 "1D-myo-inositol hexakisphosphate biosynthesis I (from Ins(1,4,5)P3)";"1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)";"Synthesis of IPs in the nucleus";"Inositol phosphate metabolism";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)";"1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)";"1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)";"Phosphatidylinositol signaling system";"Synthesis of pyrophosphates in the cytosol";"Inositol diphosphates biosynthesis" maker-scaffold381-size945626-augustus-gene-8.5-mRNA-1 1 Reactome: R-HSA-3214858 "RMTs methylate histone arginines" augustus-scaffold511-size829660-processed-gene-5.1-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold210-size1121378-augustus-gene-8.2-mRNA-1 9 Reactome: R-HSA-70171;KEGG: 00010+1.2.1.12;MetaCyc: PWY-8004;MetaCyc: PWY-7003;Reactome: R-HSA-70263;MetaCyc: PWY-6901;KEGG: 00710+1.2.1.12;MetaCyc: PWY-5484;MetaCyc: PWY-1042 "Glycolysis";"Glycolysis / Gluconeogenesis";"Entner-Doudoroff pathway I";"Glycerol degradation to butanol";"Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Carbon fixation in photosynthetic organisms";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)" maker-scaffold2503-size348601-augustus-gene-2.5-mRNA-1 4 KEGG: 00330+4.1.1.50;KEGG: 00270+4.1.1.50;MetaCyc: PWY-6834;Reactome: R-HSA-351202 "Arginine and proline metabolism";"Cysteine and methionine metabolism";"Spermidine biosynthesis III";"Metabolism of polyamines" maker-scaffold241-size1969003-augustus-gene-18.8-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" maker-scaffold668-size718058-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold3535-size358341-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-162791 "Attachment of GPI anchor to uPAR" maker-scaffold3515-size259301-augustus-gene-1.5-mRNA-1 13 Reactome: R-HSA-2243919;Reactome: R-HSA-3000157;Reactome: R-HSA-1474244;Reactome: R-HSA-1650814;Reactome: R-HSA-3000178;Reactome: R-HSA-1442490;Reactome: R-HSA-8948216;Reactome: R-HSA-3000171;Reactome: R-HSA-186797;Reactome: R-HSA-216083;Reactome: R-HSA-419037;Reactome: R-HSA-2214320;Reactome: R-HSA-2022090 "Crosslinking of collagen fibrils";"Laminin interactions";"Extracellular matrix organization";"Collagen biosynthesis and modifying enzymes";"ECM proteoglycans";"Collagen degradation";"Collagen chain trimerization";"Non-integrin membrane-ECM interactions";"Signaling by PDGF";"Integrin cell surface interactions";"NCAM1 interactions";"Anchoring fibril formation";"Assembly of collagen fibrils and other multimeric structures" maker-scaffold1772-size442332-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold166-size1230825-augustus-gene-0.7-mRNA-1 5 Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-983712;Reactome: R-HSA-77387;Reactome: R-HSA-917977 "ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Ion channel transport";"Insulin receptor recycling";"Transferrin endocytosis and recycling" maker-scaffold375-size930694-augustus-gene-7.6-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold1158-size560209-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold2419-size355437-augustus-gene-2.11-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold292-size1007774-augustus-gene-4.2-mRNA-1 3 Reactome: R-HSA-1810476;Reactome: R-HSA-445989;Reactome: R-HSA-933542 "RIP-mediated NFkB activation via ZBP1";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"TRAF6 mediated NF-kB activation" maker-scaffold265-size1040580-augustus-gene-8.2-mRNA-1 2 Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold17314-size14994-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-110362 "POLB-Dependent Long Patch Base Excision Repair" maker-scaffold2600-size337319-augustus-gene-1.5-mRNA-1 16 Reactome: R-HSA-174178;Reactome: R-HSA-2467813;Reactome: R-HSA-176412;Reactome: R-HSA-179409;Reactome: R-HSA-174154;Reactome: R-HSA-174048;Reactome: R-HSA-8853884;Reactome: R-HSA-174184;Reactome: R-HSA-983168;Reactome: R-HSA-176408;Reactome: R-HSA-2559582;Reactome: R-HSA-176409;Reactome: R-HSA-69017;Reactome: R-HSA-176407;Reactome: R-HSA-141430;Reactome: R-HSA-174084 "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Separation of Sister Chromatids";"Phosphorylation of the APC/C";"APC-Cdc20 mediated degradation of Nek2A";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdc20 mediated degradation of Cyclin B";"Transcriptional Regulation by VENTX";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of APC/C activators between G1/S and early anaphase";"Senescence-Associated Secretory Phenotype (SASP)";"APC/C:Cdc20 mediated degradation of mitotic proteins";"CDK-mediated phosphorylation and removal of Cdc6";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Autodegradation of Cdh1 by Cdh1:APC/C" maker-scaffold6020-size142426-augustus-gene-0.4-mRNA-1 5 Reactome: R-HSA-69473;Reactome: R-HSA-5693607;Reactome: R-HSA-5689901;Reactome: R-HSA-5693565;Reactome: R-HSA-5693571 "G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends";"Metalloprotease DUBs";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Nonhomologous End-Joining (NHEJ)" maker-scaffold3363-size270401-augustus-gene-1.3-mRNA-1 1 KEGG: 00970+6.1.1.3 "Aminoacyl-tRNA biosynthesis" maker-scaffold20387-size10863-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" augustus-scaffold163-size1242018-processed-gene-11.0-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold71-size2844100-augustus-gene-10.3-mRNA-1 1 Reactome: R-HSA-2299718 "Condensation of Prophase Chromosomes" maker-scaffold6402-size123134-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold2709-size324596-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold2958-size300779-augustus-gene-0.1-mRNA-1 9 Reactome: R-HSA-167162;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-6804756;Reactome: R-HSA-73779;Reactome: R-HSA-73776;Reactome: R-HSA-167172;Reactome: R-HSA-76042;Reactome: R-HSA-674695 "RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Promoter Escape";"Transcription of the HIV genome";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Pre-transcription Events" maker-scaffold861-size647090-augustus-gene-5.3-mRNA-1 2 Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.24 "Lysosomal oligosaccharide catabolism";"Other glycan degradation" maker-scaffold4674-size191860-augustus-gene-0.6-mRNA-1 14 MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-8041;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-7601;MetaCyc: PWY-5080;MetaCyc: PWY-5972;MetaCyc: PWY-7602;MetaCyc: PWY-7619 "(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Stearate biosynthesis I (animals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis" maker-scaffold8610-size67502-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold185-size1277314-augustus-gene-11.6-mRNA-1 9 Reactome: R-HSA-167161;Reactome: R-HSA-167162;Reactome: R-HSA-75953;Reactome: R-HSA-73776;Reactome: R-HSA-73779;Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-674695;Reactome: R-HSA-76042 "HIV Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Initiation And Promoter Clearance" maker-scaffold4201-size217929-augustus-gene-1.3-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold1264-size539145-augustus-gene-2.1-mRNA-1 13 MetaCyc: PWY-5123;MetaCyc: PWY-5122;MetaCyc: PWY-6859;MetaCyc: PWY-6383;KEGG: 00900+2.5.1.10+2.5.1.1;MetaCyc: PWY-7182;MetaCyc: PWY-7102;MetaCyc: PWY-7736;MetaCyc: PWY-7410;MetaCyc: PWY-7721;MetaCyc: PWY-7659;MetaCyc: PWY-7709;MetaCyc: PWY-7141 "Trans, trans-farnesyl diphosphate biosynthesis";"Geranyl diphosphate biosynthesis";"All-trans-farnesol biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"Terpenoid backbone biosynthesis";"Linalool biosynthesis I";"Bisabolene biosynthesis (engineered)";"Stellatic acid biosynthesis";"Ipsdienol biosynthesis";"Methyl phomopsenoate biosynthesis";"Viridicatumtoxin biosynthesis";"(3R)-linalool biosynthesis";"(3S)-linalool biosynthesis" maker-scaffold3513-size258726-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-381753 "Olfactory Signaling Pathway" maker-scaffold3599-size330955-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-2470946 "Cohesin Loading onto Chromatin" maker-scaffold935-size623014-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-400253 "Circadian Clock" maker-scaffold58-size1632902-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-6807505 "RNA polymerase II transcribes snRNA genes" maker-scaffold13098-size51462-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold15-size2120621-augustus-gene-9.2-mRNA-1 1 Reactome: R-HSA-425986 "Sodium/Proton exchangers" maker-scaffold1498-size486925-augustus-gene-3.15-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold292-size1007774-augustus-gene-8.3-mRNA-1 17 Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-6790901;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-2408557 "L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"rRNA modification in the nucleus and cytosol";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis" maker-scaffold13-size2141512-augustus-gene-5.1-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" augustus-scaffold7859-size82774-processed-gene-0.1-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold2870-size306875-augustus-gene-2.4-mRNA-1 10 Reactome: R-HSA-983231;Reactome: R-HSA-1855167;MetaCyc: PWY-6366;MetaCyc: PWY-4661;MetaCyc: PWY-6365;KEGG: 04070+2.7.1.159;MetaCyc: PWY-6554;Reactome: R-HSA-1855204;KEGG: 00562+2.7.1.134+2.7.1.159;MetaCyc: PWY-6362 "Factors involved in megakaryocyte development and platelet production";"Synthesis of pyrophosphates in the cytosol";"D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)";"D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis";"Phosphatidylinositol signaling system";"1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)";"Synthesis of IP3 and IP4 in the cytosol";"Inositol phosphate metabolism";"1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)" maker-scaffold482-size2148092-augustus-gene-2.2-mRNA-1 5 KEGG: 00760+2.7.1.23;MetaCyc: PWY-7269;Reactome: R-HSA-196807;MetaCyc: PWY-7268;MetaCyc: PWY-5083 "Nicotinate and nicotinamide metabolism";"NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)";"Nicotinate metabolism";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"NAD/NADH phosphorylation and dephosphorylation" augustus-scaffold4143-size225951-processed-gene-1.0-mRNA-1 13 Reactome: R-HSA-6804757;Reactome: R-HSA-8943724;Reactome: R-HSA-5628897;Reactome: R-HSA-165159;Reactome: R-HSA-389357;Reactome: R-HSA-3371571;Reactome: R-HSA-1257604;Reactome: R-HSA-9639288;Reactome: R-HSA-380972;Reactome: R-HSA-5674400;Reactome: R-HSA-166208;Reactome: R-HSA-1632852;Reactome: R-HSA-5218920 "Regulation of TP53 Degradation";"Regulation of PTEN gene transcription";"TP53 Regulates Metabolic Genes";"mTOR signalling";"CD28 dependent PI3K/Akt signaling";"HSF1-dependent transactivation";"PIP3 activates AKT signaling";"Amino acids regulate mTORC1";"Energy dependent regulation of mTOR by LKB1-AMPK";"Constitutive Signaling by AKT1 E17K in Cancer";"mTORC1-mediated signalling";"Macroautophagy";"VEGFR2 mediated vascular permeability" maker-scaffold234-size1071331-augustus-gene-0.3-mRNA-1 4 MetaCyc: PWY-5188;KEGG: 00860+4.2.1.75;Reactome: R-HSA-189451;MetaCyc: PWY-5189 "Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis";"Tetrapyrrole biosynthesis II (from glycine)" maker-scaffold785-size679144-augustus-gene-5.4-mRNA-1 2 Reactome: R-HSA-6784531;Reactome: R-HSA-6785470 "tRNA processing in the nucleus";"tRNA processing in the mitochondrion" maker-scaffold2636-size334071-augustus-gene-2.7-mRNA-1 2 Reactome: R-HSA-8963888;Reactome: R-HSA-8866423 "Chylomicron assembly";"VLDL assembly" maker-scaffold944-size619264-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold7801-size88527-augustus-gene-0.2-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" augustus-scaffold4806-size283113-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-6804115 "TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" maker-scaffold5921-size141087-augustus-gene-0.6-mRNA-1 3 Reactome: R-HSA-73621;Reactome: R-HSA-196807;Reactome: R-HSA-74259 "Pyrimidine catabolism";"Nicotinate metabolism";"Purine catabolism" augustus-scaffold565-size1319294-processed-gene-5.0-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold1307-size525526-augustus-gene-4.5-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold183-size1182426-augustus-gene-2.2-mRNA-1 57 Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-75815;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-1169091;Reactome: R-HSA-174154;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-174113;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-2871837;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5689603;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-1236978;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-5607761;Reactome: R-HSA-4641257;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-532668 "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Hedgehog 'on' state";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Ubiquitin-dependent degradation of Cyclin D";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Activation of NF-kappaB in B cells";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF-beta-TrCP mediated degradation of Emi1";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"FCERI mediated NF-kB activation";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"UCH proteinases";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of AXIN";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle" maker-scaffold1666-size445333-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold634-size739681-augustus-gene-6.6-mRNA-1 1 Reactome: R-HSA-5658442 "Regulation of RAS by GAPs" maker-scaffold1782-size444207-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold8485-size69155-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold2576-size340169-augustus-gene-2.19-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold9487-size50844-augustus-gene-0.0-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold846-size651511-augustus-gene-5.7-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold5876-size144613-augustus-gene-0.5-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold43-size1732329-augustus-gene-7.1-mRNA-1 26 Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-2132295;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-389960;Reactome: R-HSA-389977;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-190861;Reactome: R-HSA-5617833 "Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"MHC class II antigen presentation";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Formation of tubulin folding intermediates by CCT/TriC";"Post-chaperonin tubulin folding pathway";"COPI-mediated anterograde transport";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Gap junction assembly";"Cilium Assembly" augustus-scaffold2381-size358016-processed-gene-2.1-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold1248-size539542-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold4538-size204480-augustus-gene-1.5-mRNA-1 2 Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold3471-size261666-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-5578999;Reactome: R-HSA-174403 "Defective GCLC causes Hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency (HAGGSD)";"Glutathione synthesis and recycling" maker-scaffold3658-size249424-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-383280;Reactome: R-HSA-983231 "Nuclear Receptor transcription pathway";"Factors involved in megakaryocyte development and platelet production" maker-scaffold1346-size518457-augustus-gene-1.3-mRNA-1 17 MetaCyc: PWY-7187;MetaCyc: PWY-7224;MetaCyc: PWY-7176;MetaCyc: PWY-6545;MetaCyc: PWY-7222;MetaCyc: PWY-7205;MetaCyc: PWY-7227;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7221;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7220;MetaCyc: PWY-7198;MetaCyc: PWY-7226;MetaCyc: PWY-7184;MetaCyc: PWY-7197;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7210 "Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Purine deoxyribonucleosides salvage";"UTP and CTP de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Guanosine deoxyribonucleotides de novo biosynthesis II";"CMP phosphorylation";"Adenosine deoxyribonucleotides de novo biosynthesis";"Drug metabolism - other enzymes";"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine metabolism";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Purine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP" maker-scaffold12657-size22153-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" maker-scaffold1856-size433932-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-71262 "Carnitine synthesis" maker-scaffold1772-size442332-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-2428928 "IRS-related events triggered by IGF1R" augustus-scaffold4496-size203276-processed-gene-1.0-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" augustus-scaffold75-size1537034-processed-gene-6.1-mRNA-1 52 Reactome: R-HSA-6803529;Reactome: R-HSA-749476;Reactome: R-HSA-5617472;Reactome: R-HSA-6782135;Reactome: R-HSA-167161;Reactome: R-HSA-75953;Reactome: R-HSA-6782210;Reactome: R-HSA-72086;Reactome: R-HSA-167200;Reactome: R-HSA-72163;Reactome: R-HSA-427413;Reactome: R-HSA-6781827;Reactome: R-HSA-73780;Reactome: R-HSA-77075;Reactome: R-HSA-6781823;Reactome: R-HSA-76061;Reactome: R-HSA-75955;Reactome: R-HSA-73776;Reactome: R-HSA-167152;Reactome: R-HSA-5250924;Reactome: R-HSA-72165;Reactome: R-HSA-167287;Reactome: R-HSA-5601884;Reactome: R-HSA-203927;Reactome: R-HSA-167246;Reactome: R-HSA-112382;Reactome: R-HSA-73772;Reactome: R-HSA-167238;Reactome: R-HSA-168325;Reactome: R-HSA-167243;Reactome: R-HSA-73779;Reactome: R-HSA-73762;Reactome: R-HSA-9018519;Reactome: R-HSA-674695;Reactome: R-HSA-6807505;Reactome: R-HSA-1834949;Reactome: R-HSA-167172;Reactome: R-HSA-167242;Reactome: R-HSA-73980;Reactome: R-HSA-5578749;Reactome: R-HSA-167290;Reactome: R-HSA-167162;Reactome: R-HSA-167160;Reactome: R-HSA-76066;Reactome: R-HSA-76071;Reactome: R-HSA-8851708;Reactome: R-HSA-76042;Reactome: R-HSA-6796648;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-73863;Reactome: R-HSA-72203 "FGFR2 alternative splicing";"RNA Polymerase III Abortive And Retractive Initiation";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Dual incision in TC-NER";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Capping";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"mRNA Splicing - Major Pathway";"NoRC negatively regulates rRNA expression";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA Polymerase III Chain Elongation";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Promoter Escape";"Formation of HIV elongation complex in the absence of HIV Tat";"B-WICH complex positively regulates rRNA expression";"mRNA Splicing - Minor Pathway";"HIV elongation arrest and recovery";"PIWI-interacting RNA (piRNA) biogenesis";"MicroRNA (miRNA) biogenesis";"Tat-mediated elongation of the HIV-1 transcript";"Formation of RNA Pol II elongation complex";"RNA Polymerase I Promoter Escape";"Pausing and recovery of Tat-mediated HIV elongation";"Viral Messenger RNA Synthesis";"Tat-mediated HIV elongation arrest and recovery";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase I Transcription Initiation";"Estrogen-dependent gene expression";"RNA Polymerase II Pre-transcription Events";"RNA polymerase II transcribes snRNA genes";"Cytosolic sensors of pathogen-associated DNA";"Transcription of the HIV genome";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase III Transcription Termination";"Transcriptional regulation by small RNAs";"Pausing and recovery of HIV elongation";"RNA Polymerase II HIV Promoter Escape";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"Signaling by FGFR2 IIIa TM";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase I Transcription Termination";"Processing of Capped Intron-Containing Pre-mRNA" maker-scaffold4060-size225718-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-75153 "Apoptotic execution phase" maker-scaffold367-size939931-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold2303-size376594-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" augustus-scaffold2747-size322560-processed-gene-1.1-mRNA-1 3 Reactome: R-HSA-71336;KEGG: 00030+1.1.1.44;KEGG: 00480+1.1.1.44 "Pentose phosphate pathway";"Pentose phosphate pathway";"Glutathione metabolism" maker-scaffold4147-size226952-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold4408-size206779-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold332-size968382-augustus-gene-8.4-mRNA-1 2 Reactome: R-HSA-8949664;Reactome: R-HSA-8949215 "Processing of SMDT1";"Mitochondrial calcium ion transport" maker-scaffold4055-size227119-augustus-gene-1.11-mRNA-1 8 Reactome: R-HSA-3214841;Reactome: R-HSA-4551638;Reactome: R-HSA-9609690;Reactome: R-HSA-212300;Reactome: R-HSA-8943724;Reactome: R-HSA-8953750;Reactome: R-HSA-5617472;Reactome: R-HSA-2559580 "PKMTs methylate histone lysines";"SUMOylation of chromatin organization proteins";"HCMV Early Events";"PRC2 methylates histones and DNA";"Regulation of PTEN gene transcription";"Transcriptional Regulation by E2F6";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Oxidative Stress Induced Senescence" maker-scaffold2185-size384366-augustus-gene-2.5-mRNA-1 5 Reactome: R-HSA-3214858;Reactome: R-HSA-201722;Reactome: R-HSA-8939243;Reactome: R-HSA-3247509;Reactome: R-HSA-1266695 "RMTs methylate histone arginines";"Formation of the beta-catenin:TCF transactivating complex";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Chromatin modifying enzymes";"Interleukin-7 signaling" maker-scaffold4666-size193595-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold195-size1135307-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-913709 "O-linked glycosylation of mucins" maker-scaffold1871-size425123-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-419771 "Opsins" maker-scaffold9032-size58278-augustus-gene-0.1-mRNA-1 6 Reactome: R-HSA-9010553;Reactome: R-HSA-73856;Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-975957;Reactome: R-HSA-72163 "Regulation of expression of SLITs and ROBOs";"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"mRNA Splicing - Major Pathway" maker-scaffold305-size993848-augustus-gene-8.4-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold2790-size317891-augustus-gene-2.2-mRNA-1 2 Reactome: R-HSA-1268020;Reactome: R-HSA-8949613 "Mitochondrial protein import";"Cristae formation" maker-scaffold5773-size266016-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold11416-size28107-augustus-gene-0.0-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold99-size1431018-augustus-gene-9.5-mRNA-1 8 KEGG: 05165+2.7.11.1;Reactome: R-HSA-975957;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1 "Human papillomavirus infection";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Relaxin signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"PI3K-Akt signaling pathway";"Thermogenesis" maker-scaffold2383-size368223-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold2469-size365788-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-379726;KEGG: 00970+6.1.1.1 "Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis" maker-scaffold6392-size122298-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold3436-size263631-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-6807505 "RNA polymerase II transcribes snRNA genes" maker-scaffold322-size1034455-augustus-gene-4.4-mRNA-1 13 KEGG: 00670+6.3.4.3;KEGG: 00720+1.5.1.5+3.5.4.9;MetaCyc: PWY-2201;MetaCyc: PWY-2161;MetaCyc: PWY-6613;KEGG: 00670+1.5.1.5+3.5.4.9;MetaCyc: PWY-1722;MetaCyc: PWY-5497;Reactome: R-HSA-196757;MetaCyc: PWY-3841;MetaCyc: PWY-7909;KEGG: 00720+6.3.4.3;MetaCyc: PWY-5030 "One carbon pool by folate";"Carbon fixation pathways in prokaryotes";"Folate transformations I";"Folate polyglutamylation";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"One carbon pool by folate";"Formate assimilation into 5,10-methylenetetrahydrofolate";"Purine nucleobases degradation II (anaerobic)";"Metabolism of folate and pterines";"Folate transformations II (plants)";"Formaldehyde oxidation VII (THF pathway)";"Carbon fixation pathways in prokaryotes";"L-histidine degradation III" maker-scaffold1328-size518612-augustus-gene-2.8-mRNA-1 1 Reactome: R-HSA-2022377 "Metabolism of Angiotensinogen to Angiotensins" maker-scaffold3167-size283916-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1690-size874014-augustus-gene-6.2-mRNA-1 2 Reactome: R-HSA-2151201;Reactome: R-HSA-8964539 "Transcriptional activation of mitochondrial biogenesis";"Glutamate and glutamine metabolism" maker-scaffold3364-size405364-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-9022692 "Regulation of MECP2 expression and activity" augustus-scaffold785-size679144-processed-gene-5.1-mRNA-1 52 Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978;Reactome: R-HSA-69601;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-5689880;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-174113;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-180585;Reactome: R-HSA-5610780 "Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"Ub-specific processing proteases";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"SCF-beta-TrCP mediated degradation of Emi1";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome" maker-scaffold7293-size97896-augustus-gene-0.5-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold170-size1224693-augustus-gene-5.4-mRNA-1 2 KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981 "Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis" maker-scaffold1272-size532299-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-425986 "Sodium/Proton exchangers" maker-scaffold322-size1034455-augustus-gene-6.2-mRNA-1 1 Reactome: R-HSA-8866654 "E3 ubiquitin ligases ubiquitinate target proteins" maker-scaffold6680-size114010-augustus-gene-0.1-mRNA-1 7 KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1 "Thermogenesis";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Human papillomavirus infection" augustus-scaffold187-size1172215-processed-gene-8.3-mRNA-1 6 KEGG: 04660+3.1.3.16;Reactome: R-HSA-163560;Reactome: R-HSA-2173788;KEGG: 05235+3.1.3.16;Reactome: R-HSA-400253;KEGG: 04658+3.1.3.16 "T cell receptor signaling pathway";"Triglyceride catabolism";"Downregulation of TGF-beta receptor signaling";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Circadian Clock";"Th1 and Th2 cell differentiation" maker-scaffold5705-size177505-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold1686-size463981-augustus-gene-3.9-mRNA-1 7 Reactome: R-HSA-110362;Reactome: R-HSA-2173795;Reactome: R-HSA-5685939;Reactome: R-HSA-5696400;Reactome: R-HSA-5696395;Reactome: R-HSA-3108214;Reactome: R-HSA-5696394 "POLB-Dependent Long Patch Base Excision Repair";"Downregulation of SMAD2/3:SMAD4 transcriptional activity";"HDR through MMEJ (alt-NHEJ)";"Dual Incision in GG-NER";"Formation of Incision Complex in GG-NER";"SUMOylation of DNA damage response and repair proteins";"DNA Damage Recognition in GG-NER" maker-scaffold2457-size357336-augustus-gene-2.13-mRNA-1 7 KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1 "Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Human papillomavirus infection";"mTOR signaling pathway";"Relaxin signaling pathway";"Thermogenesis";"PI3K-Akt signaling pathway" maker-scaffold2794-size323726-augustus-gene-2.14-mRNA-1 3 Reactome: R-HSA-5663213;Reactome: R-HSA-202433;Reactome: R-HSA-2029482 "RHO GTPases Activate WASPs and WAVEs";"Generation of second messenger molecules";"Regulation of actin dynamics for phagocytic cup formation" maker-scaffold136-size1322015-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold6979-size110591-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold548-size808714-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold1640-size462359-augustus-gene-3.11-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold2605-size334285-augustus-gene-2.8-mRNA-1 6 Reactome: R-HSA-77387;Reactome: R-HSA-6798695;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-917977 "Insulin receptor recycling";"Neutrophil degranulation";"Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Transferrin endocytosis and recycling" maker-scaffold3114-size289786-augustus-gene-0.2-mRNA-1 16 Reactome: R-HSA-437239;Reactome: R-HSA-2132295;Reactome: R-HSA-167590;Reactome: R-HSA-182218;Reactome: R-HSA-416993;Reactome: R-HSA-8866427;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-164939;Reactome: R-HSA-8964038;Reactome: R-HSA-177504;Reactome: R-HSA-196025;Reactome: R-HSA-190873;Reactome: R-HSA-5099900;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825 "Recycling pathway of L1";"MHC class II antigen presentation";"Nef Mediated CD4 Down-regulation";"Nef Mediated CD8 Down-regulation";"Trafficking of GluR2-containing AMPA receptors";"VLDLR internalisation and degradation";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Nef mediated downregulation of CD28 cell surface expression";"LDL clearance";"Retrograde neurotrophin signalling";"Formation of annular gap junctions";"Gap junction degradation";"WNT5A-dependent internalization of FZD4";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis" maker-scaffold4176-size219397-augustus-gene-1.3-mRNA-1 1 KEGG: 00970+6.1.1.3 "Aminoacyl-tRNA biosynthesis" maker-scaffold6820-size110210-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-425381 "Bicarbonate transporters" maker-scaffold1069-size578407-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold7565-size98670-augustus-gene-0.2-mRNA-1 5 Reactome: R-HSA-73772;Reactome: R-HSA-427413;Reactome: R-HSA-5250924;Reactome: R-HSA-73863;Reactome: R-HSA-73762 "RNA Polymerase I Promoter Escape";"NoRC negatively regulates rRNA expression";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation" maker-scaffold4830-size336221-augustus-gene-2.13-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold3410-size319517-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-2559584 "Formation of Senescence-Associated Heterochromatin Foci (SAHF)" maker-scaffold241-size1969003-augustus-gene-18.6-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold4597-size206035-augustus-gene-1.1-mRNA-1 5 Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-2644606;Reactome: R-HSA-350054;Reactome: R-HSA-3214815 "Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Notch-HLH transcription pathway";"HDACs deacetylate histones" maker-scaffold1573-size471180-augustus-gene-3.6-mRNA-1 3 Reactome: R-HSA-1660516;Reactome: R-HSA-1660514;Reactome: R-HSA-1660517 "Synthesis of PIPs at the early endosome membrane";"Synthesis of PIPs at the Golgi membrane";"Synthesis of PIPs at the late endosome membrane" maker-scaffold815-size651771-augustus-gene-5.7-mRNA-1 2 Reactome: R-HSA-2160916;Reactome: R-HSA-8854518 "Hyaluronan uptake and degradation";"AURKA Activation by TPX2" maker-scaffold77-size1526962-augustus-gene-14.5-mRNA-1 7 Reactome: R-HSA-6798695;Reactome: R-HSA-389957;Reactome: R-HSA-5620922;Reactome: R-HSA-389960;Reactome: R-HSA-390450;Reactome: R-HSA-390471;Reactome: R-HSA-6814122 "Neutrophil degranulation";"Prefoldin mediated transfer of substrate to CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Formation of tubulin folding intermediates by CCT/TriC";"Folding of actin by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding" maker-scaffold3733-size243954-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" maker-scaffold13047-size20600-augustus-gene-0.0-mRNA-1 5 Reactome: R-HSA-75105;Reactome: R-HSA-9029558;Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-2426168 "Fatty acyl-CoA biosynthesis";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"Activation of gene expression by SREBF (SREBP)" maker-scaffold1453-size499979-augustus-gene-3.1-mRNA-1 31 MetaCyc: PWYG-321;MetaCyc: PWY-7388;MetaCyc: PWY-6799;MetaCyc: PWY-8049;MetaCyc: PWY-8012;MetaCyc: PWY-7723;MetaCyc: PWY-5989;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;Reactome: R-HSA-163765;MetaCyc: PWY-4381;MetaCyc: PWY-5147;MetaCyc: PWY-5994;MetaCyc: PWY-7664;MetaCyc: PWY-6519;Reactome: R-HSA-75105;MetaCyc: PWY-6113;MetaCyc: PWY-5966-1;MetaCyc: PWY-5971;MetaCyc: PWY-5366;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;Reactome: R-HSA-2426168;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;MetaCyc: PWY-5367;MetaCyc: PWY-7663;MetaCyc: PWY-8047;MetaCyc: PWY-7746;MetaCyc: PWY-5973;MetaCyc: PWY-6282;MetaCyc: PWY-7858;MetaCyc: PWY-5142 "";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Fatty acid biosynthesis initiation (plant mitochondria)";"Pederin biosynthesis";"Mupirocin biosynthesis";"Bacterial bioluminescence";"Stearate biosynthesis II (bacteria and plants)";"Biotin metabolism";"ChREBP activates metabolic gene expression";"Fatty acid biosynthesis initiation (bacteria and plants)";"Oleate biosynthesis I (plants)";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Oleate biosynthesis IV (anaerobic)";"8-amino-7-oxononanoate biosynthesis I";"Fatty acyl-CoA biosynthesis";"Superpathway of mycolate biosynthesis";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Palmitoleate biosynthesis II (plants and bacteria)";"Fatty acid biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Petroselinate biosynthesis";"Gondoate biosynthesis (anaerobic)";"Bryostatin biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Cis-vaccenate biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"(5Z)-dodecenoate biosynthesis II";"Acyl-[acyl-carrier protein] thioesterase pathway" maker-scaffold785-size679144-augustus-gene-4.3-mRNA-1 6 Reactome: R-HSA-5693565;Reactome: R-HSA-8939211;KEGG: 04660+3.1.3.16;Reactome: R-HSA-5675221;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16 "Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"ESR-mediated signaling";"T cell receptor signaling pathway";"Negative regulation of MAPK pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation" maker-scaffold730-size696878-augustus-gene-2.3-mRNA-1 4 Reactome: R-HSA-5362768;Reactome: R-HSA-5678895;Reactome: R-HSA-5358346;Reactome: R-HSA-382556 "Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Defective CFTR causes cystic fibrosis";"Hedgehog ligand biogenesis";"ABC-family proteins mediated transport" maker-scaffold2382-size463072-augustus-gene-3.7-mRNA-1 2 Reactome: R-HSA-71336;KEGG: 00710+2.7.1.14 "Pentose phosphate pathway";"Carbon fixation in photosynthetic organisms" maker-scaffold1121-size564041-augustus-gene-4.8-mRNA-1 5 Reactome: R-HSA-350054;Reactome: R-HSA-5083630;Reactome: R-HSA-1912408;Reactome: R-HSA-1912399;Reactome: R-HSA-1912420 "Notch-HLH transcription pathway";"Defective LFNG causes SCDO3";"Pre-NOTCH Transcription and Translation";"Pre-NOTCH Processing in the Endoplasmic Reticulum";"Pre-NOTCH Processing in Golgi" maker-scaffold325-size972641-augustus-gene-7.6-mRNA-1 5 MetaCyc: PWY-3781;KEGG: 00190+7.1.1.8;MetaCyc: PWY-7279;MetaCyc: PWY-7082;MetaCyc: PWY-6692 "Aerobic respiration I (cytochrome c)";"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"Ammonia oxidation IV (autotrophic ammonia oxidizers)";"Fe(II) oxidation" maker-scaffold3703-size250683-augustus-gene-1.13-mRNA-1 27 Reactome: R-HSA-9609690;Reactome: R-HSA-191859;Reactome: R-HSA-159227;Reactome: R-HSA-4551638;Reactome: R-HSA-5619107;Reactome: R-HSA-165054;Reactome: R-HSA-168333;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-168271;Reactome: R-HSA-159236;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-168325;Reactome: R-HSA-159231;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-4085377;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-5578749 "HCMV Early Events";"snRNP Assembly";"Transport of the SLBP independent Mature mRNA";"SUMOylation of chromatin organization proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Rev-mediated nuclear export of HIV RNA";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Viral Messenger RNA Synthesis";"Transport of Mature mRNA Derived from an Intronless Transcript";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"SUMOylation of SUMOylation proteins";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"Transcriptional regulation by small RNAs" maker-scaffold6811-size110917-augustus-gene-0.2-mRNA-1 4 Reactome: R-HSA-9018519;Reactome: R-HSA-3371568;Reactome: R-HSA-3371497;Reactome: R-HSA-8939211 "Estrogen-dependent gene expression";"Attenuation phase";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"ESR-mediated signaling" maker-scaffold11307-size48026-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold1293-size527776-augustus-gene-2.1-mRNA-1 8 Reactome: R-HSA-68616;Reactome: R-HSA-68689;Reactome: R-HSA-113507;Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-68827;Reactome: R-HSA-68867;Reactome: R-HSA-176187 "Assembly of the ORC complex at the origin of replication";"CDC6 association with the ORC:origin complex";"E2F-enabled inhibition of pre-replication complex formation";"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress" maker-scaffold984-size605057-augustus-gene-1.2-mRNA-1 7 KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1 "Relaxin signaling pathway";"Thermogenesis";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"Human papillomavirus infection";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway" maker-scaffold1098-size570766-augustus-gene-4.4-mRNA-1 5 KEGG: 00514+2.4.1.109;MetaCyc: PWY-7921;MetaCyc: PWY-7979;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7922 "Other types of O-glycan biosynthesis";"Protein O-mannosylation I (yeast)";"Protein O-mannosylation III (mammals, core M3)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation II (mammals, core M1 and core M2)" maker-scaffold278-size1024755-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-446203;Reactome: R-HSA-1799339 "Asparagine N-linked glycosylation";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold2839-size394557-augustus-gene-2.10-mRNA-1 6 MetaCyc: PWY-622;Reactome: R-HSA-189085;MetaCyc: PWY-7900;KEGG: 00500+2.4.1.18;KEGG: 00500+3.2.1.1;MetaCyc: PWY-5067 "Starch biosynthesis";"Digestion of dietary carbohydrate";"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)";"Starch and sucrose metabolism";"Starch and sucrose metabolism";"Glycogen biosynthesis II (from UDP-D-Glucose)" maker-scaffold3379-size272277-augustus-gene-1.8-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis" maker-scaffold1099-size572324-augustus-gene-4.5-mRNA-1 2 Reactome: R-HSA-5576892;Reactome: R-HSA-5576893 "Phase 0 - rapid depolarisation";"Phase 2 - plateau phase" maker-scaffold570-size783280-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold268-size1038485-augustus-gene-9.4-mRNA-1 3 Reactome: R-HSA-5689603;Reactome: R-HSA-2151201;Reactome: R-HSA-3214847 "UCH proteinases";"Transcriptional activation of mitochondrial biogenesis";"HATs acetylate histones" maker-scaffold187-size1172215-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold2870-size306875-augustus-gene-2.3-mRNA-1 10 Reactome: R-HSA-983231;Reactome: R-HSA-1855167;MetaCyc: PWY-6366;Reactome: R-HSA-1855204;MetaCyc: PWY-6362;KEGG: 00562+2.7.1.134+2.7.1.159;MetaCyc: PWY-4661;MetaCyc: PWY-6554;MetaCyc: PWY-6365;KEGG: 04070+2.7.1.159 "Factors involved in megakaryocyte development and platelet production";"Synthesis of pyrophosphates in the cytosol";"D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis";"Synthesis of IP3 and IP4 in the cytosol";"1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)";"Inositol phosphate metabolism";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)";"1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)";"D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis";"Phosphatidylinositol signaling system" augustus-scaffold1664-size456214-processed-gene-3.2-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold25-size3374183-augustus-gene-10.2-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold2832-size563454-augustus-gene-1.2-mRNA-1 3 MetaCyc: PWY-3961;KEGG: 00770+2.7.1.33;Reactome: R-HSA-196783 "Phosphopantothenate biosynthesis II";"Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis" augustus-scaffold291-size1197116-processed-gene-4.0-mRNA-1 18 KEGG: 00592+3.1.1.4;KEGG: 00591+3.1.1.4;MetaCyc: PWY-7783;MetaCyc: PWY-8053;Reactome: R-HSA-1482925;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;Reactome: R-HSA-1482922;Reactome: R-HSA-1482801;KEGG: 00590+3.1.1.4;Reactome: R-HSA-1482788;MetaCyc: PWY-8051;MetaCyc: PWY-7409;MetaCyc: PWY-7416;Reactome: R-HSA-1483166;Reactome: R-HSA-1482839;KEGG: 00564+3.1.1.4;MetaCyc: PWY-6803 "alpha-Linolenic acid metabolism";"Linoleic acid metabolism";"Plasmalogen degradation";"Anandamide biosynthesis II";"Acyl chain remodelling of PG";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Acyl chain remodelling of PI";"Acyl chain remodelling of PS";"Arachidonic acid metabolism";"Acyl chain remodelling of PC";"Anandamide biosynthesis I";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Synthesis of PA";"Acyl chain remodelling of PE";"Glycerophospholipid metabolism";"Phosphatidylcholine acyl editing" maker-scaffold2800-size319359-augustus-gene-1.1-mRNA-1 3 Reactome: R-HSA-110328;Reactome: R-HSA-110357;Reactome: R-HSA-110329 "Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Displacement of DNA glycosylase by APEX1";"Cleavage of the damaged pyrimidine" maker-scaffold3098-size295712-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-162791 "Attachment of GPI anchor to uPAR" maker-scaffold6544-size118397-augustus-gene-0.1-mRNA-1 1 KEGG: 00970+6.3.5.7 "Aminoacyl-tRNA biosynthesis" maker-scaffold1887-size423487-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-611105 "Respiratory electron transport" maker-scaffold1829-size431662-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-5620924 "Intraflagellar transport" maker-scaffold507-size818197-augustus-gene-3.4-mRNA-1 14 MetaCyc: PWY-5497;MetaCyc: PWY-1622;MetaCyc: PWY-3841;KEGG: 00260+2.1.2.1;Reactome: R-HSA-196757;MetaCyc: PWY-181;MetaCyc: PWY-3661;KEGG: 00680+2.1.2.1;KEGG: 00460+2.1.2.1;KEGG: 00630+2.1.2.1;MetaCyc: PWY-2161;MetaCyc: PWY-2201;KEGG: 00670+2.1.2.1;MetaCyc: PWY-3661-1 "Purine nucleobases degradation II (anaerobic)";"Formaldehyde assimilation I (serine pathway)";"Folate transformations II (plants)";"Glycine, serine and threonine metabolism";"Metabolism of folate and pterines";"Photorespiration ";"Glycine betaine degradation I";"Methane metabolism";"Cyanoamino acid metabolism";"Glyoxylate and dicarboxylate metabolism";"Folate polyglutamylation";"Folate transformations I";"One carbon pool by folate";"Glycine betaine degradation II (mammalian)" maker-scaffold2642-size331122-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-432047 "Passive transport by Aquaporins" maker-scaffold940-size620631-augustus-gene-3.1-mRNA-1 3 Reactome: R-HSA-418359;Reactome: R-HSA-936837;Reactome: R-HSA-5578775 "Reduction of cytosolic Ca++ levels";"Ion transport by P-type ATPases";"Ion homeostasis" maker-scaffold1079-size595124-augustus-gene-3.2-mRNA-1 3 Reactome: R-HSA-416482;Reactome: R-HSA-193648;Reactome: R-HSA-194840 "G alpha (12/13) signalling events";"NRAGE signals death through JNK";"Rho GTPase cycle" maker-scaffold9619-size48232-augustus-gene-0.1-mRNA-1 5 MetaCyc: PWY-5083;MetaCyc: PWY-7268;Reactome: R-HSA-196807;MetaCyc: PWY-7269;KEGG: 00760+2.7.1.23 "NAD/NADH phosphorylation and dephosphorylation";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Nicotinate metabolism";"NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)";"Nicotinate and nicotinamide metabolism" maker-scaffold672-size730744-augustus-gene-4.5-mRNA-1 1 Reactome: R-HSA-5576886 "Phase 4 - resting membrane potential" maker-scaffold3150-size285093-augustus-gene-1.17-mRNA-1 3 MetaCyc: PWY-7800;MetaCyc: PWY-7799;Reactome: R-HSA-2514859 "Ac/N-end rule pathway";"Arg/N-end rule pathway (eukaryotic)";"Inactivation, recovery and regulation of the phototransduction cascade" maker-scaffold2478-size471058-augustus-gene-3.10-mRNA-1 1 Reactome: R-HSA-70895 "Branched-chain amino acid catabolism" maker-scaffold1101-size573605-augustus-gene-4.2-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold998-size601824-augustus-gene-4.4-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold338-size969700-augustus-gene-4.4-mRNA-1 3 Reactome: R-HSA-9033241;Reactome: R-HSA-9603798;Reactome: R-HSA-8866654 "Peroxisomal protein import";"Class I peroxisomal membrane protein import";"E3 ubiquitin ligases ubiquitinate target proteins" maker-scaffold1798-size436209-augustus-gene-3.8-mRNA-1 3 KEGG: 00561+3.1.1.23;MetaCyc: PWY-7420;Reactome: R-HSA-426048 "Glycerolipid metabolism";"Monoacylglycerol metabolism (yeast)";"Arachidonate production from DAG" maker-scaffold501-size831687-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-77108 "Utilization of Ketone Bodies" maker-scaffold1289-size526270-augustus-gene-4.7-mRNA-1 2 Reactome: R-HSA-1169408;Reactome: R-HSA-168276 "ISG15 antiviral mechanism";"NS1 Mediated Effects on Host Pathways" maker-scaffold5077-size174650-augustus-gene-0.5-mRNA-1 29 Reactome: R-HSA-5693565;Reactome: R-HSA-5685938;Reactome: R-HSA-6804756;KEGG: 04926+2.7.11.1;Reactome: R-HSA-3371453;Reactome: R-HSA-5693554;KEGG: 05165+2.7.11.1;Reactome: R-HSA-5693616;Reactome: R-HSA-6804760;Reactome: R-HSA-6803207;Reactome: R-HSA-6796648;Reactome: R-HSA-5685942;Reactome: R-HSA-5693548;Reactome: R-HSA-69473;Reactome: R-HSA-912446;Reactome: R-HSA-5693579;Reactome: R-HSA-5693571;Reactome: R-HSA-6804757;Reactome: R-HSA-6803204;Reactome: R-HSA-69541;Reactome: R-HSA-5693568;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-5693607;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-2559586;KEGG: 04150+2.7.11.1;Reactome: R-HSA-349425 "Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"HDR through Single Strand Annealing (SSA)";"Regulation of TP53 Activity through Phosphorylation";"Relaxin signaling pathway";"Regulation of HSF1-mediated heat shock response";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Human papillomavirus infection";"Presynaptic phase of homologous DNA pairing and strand exchange";"Regulation of TP53 Activity through Methylation";"TP53 Regulates Transcription of Caspase Activators and Caspases";"TP53 Regulates Transcription of DNA Repair Genes";"HDR through Homologous Recombination (HRR)";"Sensing of DNA Double Strand Breaks";"G2/M DNA damage checkpoint";"Meiotic recombination";"Homologous DNA Pairing and Strand Exchange";"Nonhomologous End-Joining (NHEJ)";"Regulation of TP53 Degradation";"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"Stabilization of p53";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Thermogenesis";"PI3K-Akt signaling pathway";"Processing of DNA double-strand break ends";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"DNA Damage/Telomere Stress Induced Senescence";"mTOR signaling pathway";"Autodegradation of the E3 ubiquitin ligase COP1" maker-scaffold6093-size135076-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-203927 "MicroRNA (miRNA) biogenesis" augustus-scaffold2874-size309198-processed-gene-2.1-mRNA-1 1 Reactome: R-HSA-426117 "Cation-coupled Chloride cotransporters" maker-scaffold942-size1057814-augustus-gene-9.8-mRNA-1 2 Reactome: R-HSA-5357905;Reactome: R-HSA-5357956 "Regulation of TNFR1 signaling";"TNFR1-induced NFkappaB signaling pathway" maker-scaffold9227-size55615-augustus-gene-0.2-mRNA-1 5 Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-6811434;Reactome: R-HSA-212436;Reactome: R-HSA-983189 "Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"COPI-dependent Golgi-to-ER retrograde traffic";"Generic Transcription Pathway";"Kinesins" maker-scaffold9822-size45309-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold1245-size553491-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-6790901 "rRNA modification in the nucleus and cytosol" maker-scaffold2980-size303770-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold2280-size372635-processed-gene-1.1-mRNA-1 10 MetaCyc: PWY-7524;KEGG: 00900+2.3.3.10;KEGG: 00280+2.3.3.10;MetaCyc: PWY-922;KEGG: 00072+2.3.3.10;MetaCyc: PWY-6174;MetaCyc: PWY-7391;Reactome: R-HSA-1989781;MetaCyc: PWY-7571;KEGG: 00650+2.3.3.10 "Mevalonate pathway III (archaea)";"Terpenoid backbone biosynthesis";"Valine, leucine and isoleucine degradation";"Mevalonate pathway I";"Synthesis and degradation of ketone bodies";"Mevalonate pathway II (archaea)";"Isoprene biosynthesis II (engineered)";"PPARA activates gene expression";"Ferrichrome A biosynthesis";"Butanoate metabolism" maker-scaffold66-size1598342-augustus-gene-14.4-mRNA-1 3 Reactome: R-HSA-162658;Reactome: R-HSA-6807878;Reactome: R-HSA-204005 "Golgi Cisternae Pericentriolar Stack Reorganization";"COPI-mediated anterograde transport";"COPII-mediated vesicle transport" maker-scaffold50872-size4790-augustus-gene-0.0-mRNA-1 5 Reactome: R-HSA-75105;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-2426168 "Fatty acyl-CoA biosynthesis";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"Activation of gene expression by SREBF (SREBP)" maker-scaffold3532-size258740-augustus-gene-1.8-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis" maker-scaffold953-size1049918-augustus-gene-8.3-mRNA-1 3 Reactome: R-HSA-4420097;KEGG: 04660+2.7.10.2;Reactome: R-HSA-391160 "VEGFA-VEGFR2 Pathway";"T cell receptor signaling pathway";"Signal regulatory protein family interactions" augustus-scaffold1149-size562162-processed-gene-4.2-mRNA-1 2 Reactome: R-HSA-5357905;Reactome: R-HSA-8876198 "Regulation of TNFR1 signaling";"RAB GEFs exchange GTP for GDP on RABs" maker-scaffold6839-size117005-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" augustus-scaffold9373-size52351-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-6803204 "TP53 Regulates Transcription of Genes Involved in Cytochrome C Release" maker-scaffold282-size1020917-augustus-gene-5.3-mRNA-1 2 Reactome: R-HSA-1474151;Reactome: R-HSA-2022928 "Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation";"HS-GAG biosynthesis" augustus-scaffold4168-size240031-processed-gene-1.0-mRNA-1 6 KEGG: 00562+3.1.3.64+3.1.3.95;MetaCyc: PWY-6368;KEGG: 04070+3.1.3.64+3.1.3.95;MetaCyc: PWY-6367;MetaCyc: PWY-6580;Reactome: R-HSA-1660499 "Inositol phosphate metabolism";"3-phosphoinositide degradation";"Phosphatidylinositol signaling system";"D-myo-inositol-5-phosphate metabolism";"Phosphatidylinositol biosynthesis I (bacteria)";"Synthesis of PIPs at the plasma membrane" maker-scaffold1196-size551535-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold5322-size164179-augustus-gene-0.10-mRNA-1 2 Reactome: R-HSA-975957;Reactome: R-HSA-9010553 "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs" maker-scaffold114-size1392915-augustus-gene-5.5-mRNA-1 1 Reactome: R-HSA-5620922 "BBSome-mediated cargo-targeting to cilium" augustus-scaffold629-size878374-processed-gene-3.1-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" augustus-scaffold20566-size18508-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-191859 "snRNP Assembly" augustus-scaffold1218-size545547-processed-gene-2.1-mRNA-1 2 KEGG: 00230+2.7.4.8;MetaCyc: PWY-7221 "Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis" maker-scaffold1732-size772296-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-427975 "Proton/oligopeptide cotransporters" augustus-scaffold10344-size41011-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-8964038;Reactome: R-HSA-6798695 "LDL clearance";"Neutrophil degranulation" maker-scaffold7106-size101723-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" maker-scaffold17918-size14269-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-5658442 "Regulation of RAS by GAPs" maker-scaffold929-size627189-augustus-gene-2.4-mRNA-1 3 MetaCyc: PWY-7533;Reactome: R-HSA-2142691;Reactome: R-HSA-5423646 "Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Aflatoxin activation and detoxification" maker-scaffold1513-size517322-augustus-gene-1.4-mRNA-1 4 Reactome: R-HSA-73614;KEGG: 00240+2.7.1.48;KEGG: 00983+2.7.1.48;MetaCyc: PWY-7193 "Pyrimidine salvage";"Pyrimidine metabolism";"Drug metabolism - other enzymes";"Pyrimidine ribonucleosides salvage I" maker-scaffold12222-size23874-augustus-gene-0.1-mRNA-1 8 Reactome: R-HSA-8856828;Reactome: R-HSA-5099900;Reactome: R-HSA-196025;Reactome: R-HSA-432720;Reactome: R-HSA-190873;Reactome: R-HSA-8856825;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745 "Clathrin-mediated endocytosis";"WNT5A-dependent internalization of FZD4";"Formation of annular gap junctions";"Lysosome Vesicle Biogenesis";"Gap junction degradation";"Cargo recognition for clathrin-mediated endocytosis";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2" maker-scaffold601-size756393-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold1704-size451651-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold5773-size266016-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold17-size2088793-augustus-gene-2.1-mRNA-1 2 Reactome: R-HSA-8936459;Reactome: R-HSA-3214841 "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"PKMTs methylate histone lysines" maker-scaffold3101-size288282-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-3295583 "TRP channels" maker-scaffold2246-size380338-augustus-gene-2.8-mRNA-1 14 MetaCyc: PWY-6969;MetaCyc: PWY-7254;KEGG: 00720+1.3.5.1;KEGG: 00650+1.3.5.1;MetaCyc: PWY-4302;Reactome: R-HSA-71403;KEGG: 00020+1.3.5.1;MetaCyc: PWY-5690;MetaCyc: PWY-6728;MetaCyc: PWY-3781;MetaCyc: PWY-561;KEGG: 00190+1.3.5.1;MetaCyc: PWY-7279;Reactome: R-HSA-611105 "TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"TCA cycle VII (acetate-producers)";"Carbon fixation pathways in prokaryotes";"Butanoate metabolism";"Aerobic respiration III (alternative oxidase pathway)";"Citric acid cycle (TCA cycle)";"Citrate cycle (TCA cycle)";"TCA cycle II (plants and fungi)";"Methylaspartate cycle";"Aerobic respiration I (cytochrome c)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"Respiratory electron transport" maker-scaffold2041-size399727-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" augustus-scaffold4379-size207638-processed-gene-1.3-mRNA-1 2 Reactome: R-HSA-69273;Reactome: R-HSA-8862803 "Cyclin A/B1/B2 associated events during G2/M transition";"Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models" augustus-scaffold148-size1291560-processed-gene-8.1-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold1168-size645170-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold7431-size116949-augustus-gene-0.5-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold4210-size219432-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold8704-size64844-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-2151201;Reactome: R-HSA-163282 "Transcriptional activation of mitochondrial biogenesis";"Mitochondrial transcription initiation" maker-scaffold3902-size281484-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold3150-size285093-augustus-gene-1.15-mRNA-1 1 Reactome: R-HSA-110357 "Displacement of DNA glycosylase by APEX1" maker-scaffold1393-size509612-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold1162-size558189-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold473-size853037-augustus-gene-7.7-mRNA-1 6 Reactome: R-HSA-4641265;Reactome: R-HSA-4411364;Reactome: R-HSA-201722;Reactome: R-HSA-8951430;Reactome: R-HSA-3769402;Reactome: R-HSA-4086398 "Repression of WNT target genes";"Binding of TCF/LEF:CTNNB1 to target gene promoters";"Formation of the beta-catenin:TCF transactivating complex";"RUNX3 regulates WNT signaling";"Deactivation of the beta-catenin transactivating complex";"Ca2+ pathway" maker-scaffold2955-size571925-augustus-gene-2.3-mRNA-1 56 Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-1169091;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-2871837;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684 "Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"Activation of NF-kappaB in B cells";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"FCERI mediated NF-kB activation";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state" maker-scaffold668-size718058-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold971-size607257-augustus-gene-3.4-mRNA-1 3 Reactome: R-HSA-1660662;KEGG: 00600+3.1.4.12;MetaCyc: PWY-7277 "Glycosphingolipid metabolism";"Sphingolipid metabolism";"Sphingolipid biosynthesis (mammals)" maker-scaffold1256-size537537-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-163210;Reactome: R-HSA-8949613 "Formation of ATP by chemiosmotic coupling";"Cristae formation" augustus-scaffold1932-size414877-processed-gene-3.1-mRNA-1 8 MetaCyc: PWY-6133;KEGG: 00350+1.14.16.2;MetaCyc: PWY-5394;MetaCyc: PWY-3581;KEGG: 00950+1.14.16.2;MetaCyc: PWY-5049;KEGG: 00790+1.14.16.2;Reactome: R-HSA-209905 "(S)-reticuline biosynthesis II";"Tyrosine metabolism";"Betalamic acid biosynthesis";"(S)-reticuline biosynthesis I";"Isoquinoline alkaloid biosynthesis";"Rosmarinic acid biosynthesis II";"Folate biosynthesis";"Catecholamine biosynthesis" maker-scaffold2902-size310672-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold680-size715670-augustus-gene-4.7-mRNA-1 2 Reactome: R-HSA-8936459;Reactome: R-HSA-3214841 "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"PKMTs methylate histone lysines" augustus-scaffold16221-size20652-processed-gene-0.0-mRNA-1 6 Reactome: R-HSA-77387;Reactome: R-HSA-6798695;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-917977 "Insulin receptor recycling";"Neutrophil degranulation";"Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Transferrin endocytosis and recycling" maker-scaffold3572-size254053-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold21649-size14071-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-203927 "MicroRNA (miRNA) biogenesis" maker-scaffold11-size2264712-augustus-gene-6.1-mRNA-1 2 Reactome: R-HSA-6782315;MetaCyc: PWY-6829 "tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)" maker-scaffold2817-size319623-augustus-gene-2.4-mRNA-1 1 KEGG: 00760+2.3.1.286 "Nicotinate and nicotinamide metabolism" augustus-scaffold2966-size376486-processed-gene-2.1-mRNA-1 4 Reactome: R-HSA-917977;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-77387 "Transferrin endocytosis and recycling";"ROS and RNS production in phagocytes";"Ion channel transport";"Insulin receptor recycling" maker-scaffold4724-size192311-augustus-gene-0.7-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-6811434 "Neutrophil degranulation";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold73-size1549181-augustus-gene-4.1-mRNA-1 4 MetaCyc: PWY-7219;KEGG: 00230+2.7.4.3;Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3 "Adenosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism" maker-scaffold1912-size427002-augustus-gene-1.3-mRNA-1 4 Reactome: R-HSA-77595;Reactome: R-HSA-73856;Reactome: R-HSA-72163;Reactome: R-HSA-72187 "Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing" maker-scaffold305-size993848-augustus-gene-5.1-mRNA-1 8 Reactome: R-HSA-164378;Reactome: R-HSA-983231;Reactome: R-HSA-5610787;Reactome: R-HSA-442720;Reactome: R-HSA-381676;Reactome: R-HSA-163615;Reactome: R-HSA-432040;Reactome: R-HSA-180024 "PKA activation in glucagon signalling";"Factors involved in megakaryocyte development and platelet production";"Hedgehog 'off' state";"CREB1 phosphorylation through the activation of Adenylate Cyclase";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"PKA activation";"Vasopressin regulates renal water homeostasis via Aquaporins";"DARPP-32 events" maker-scaffold4969-size224799-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" maker-scaffold2345-size361280-augustus-gene-1.3-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold1599-size952777-augustus-gene-7.3-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" augustus-scaffold3279-size272368-processed-gene-1.3-mRNA-1 5 Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5610787;Reactome: R-HSA-5610785;Reactome: R-HSA-5610780 "Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"Hedgehog 'off' state";"GLI3 is processed to GLI3R by the proteasome";"Degradation of GLI1 by the proteasome" augustus-scaffold3719-size243194-processed-gene-1.0-mRNA-1 1 Reactome: R-HSA-72165 "mRNA Splicing - Minor Pathway" maker-scaffold803-size668641-augustus-gene-5.5-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold1140-size601982-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-1483101 "Synthesis of PS" maker-scaffold785-size679144-augustus-gene-4.5-mRNA-1 7 MetaCyc: PWY-6545;MetaCyc: PWY-7210;KEGG: 00730+3.6.1.15;MetaCyc: PWY-7184;KEGG: 00230+3.6.1.15;MetaCyc: PWY-7185;MetaCyc: PWY-7198 "Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Thiamine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism";"UTP and CTP dephosphorylation I";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV" maker-scaffold288-size1017370-augustus-gene-1.3-mRNA-1 4 MetaCyc: PWY-5642;KEGG: 00280+1.2.1.27;Reactome: R-HSA-70895;KEGG: 00640+1.2.1.27 "2,4-dinitrotoluene degradation";"Valine, leucine and isoleucine degradation";"Branched-chain amino acid catabolism";"Propanoate metabolism" maker-scaffold2470-size348950-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-428890 "Role of ABL in ROBO-SLIT signaling" maker-scaffold111-size1895004-augustus-gene-12.3-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold3632-size254775-augustus-gene-1.6-mRNA-1 4 Reactome: R-HSA-167160;Reactome: R-HSA-77075;MetaCyc: PWY-7375;Reactome: R-HSA-72086 "RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Pol II CTD phosphorylation and interaction with CE";"Mrna capping I";"mRNA Capping" maker-scaffold75-size1537034-augustus-gene-7.1-mRNA-1 1 Reactome: R-HSA-156842 "Eukaryotic Translation Elongation" maker-scaffold316-size983291-augustus-gene-2.3-mRNA-1 13 Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-2408557;Reactome: R-HSA-975956 "Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" maker-scaffold5370-size181238-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15 "Detoxification of Reactive Oxygen Species";"Glutathione metabolism" maker-scaffold4419-size206001-augustus-gene-1.5-mRNA-1 5 MetaCyc: PWY-5269;Reactome: R-HSA-1483148;KEGG: 00564+2.7.8.5;MetaCyc: PWY-7817;MetaCyc: PWY-5668 "Cardiolipin biosynthesis II";"Synthesis of PG";"Glycerophospholipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Cardiolipin biosynthesis I" maker-scaffold5840-size143679-augustus-gene-0.3-mRNA-1 7 MetaCyc: PWY-7445;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-5466;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5469;MetaCyc: PWY-6824 "Luteolin triglucuronide degradation";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Matairesinol biosynthesis";"Phenylpropanoid biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis" maker-scaffold445-size877827-augustus-gene-3.1-mRNA-1 2 Reactome: R-HSA-877300;Reactome: R-HSA-2132295 "Interferon gamma signaling";"MHC class II antigen presentation" maker-scaffold4957-size181419-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-72706;Reactome: R-HSA-72702 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition" maker-scaffold2254-size374578-augustus-gene-2.8-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold6676-size115786-augustus-gene-0.3-mRNA-1 13 Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764 "Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination" maker-scaffold3131-size285995-augustus-gene-1.9-mRNA-1 1 Reactome: R-HSA-6784531 "tRNA processing in the nucleus" maker-scaffold5631-size153369-augustus-gene-0.10-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold1347-size955567-processed-gene-8.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold989-size604863-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-8874081;Reactome: R-HSA-3000157;Reactome: R-HSA-3000171 "MET activates PTK2 signaling";"Laminin interactions";"Non-integrin membrane-ECM interactions" maker-scaffold252-size1067927-augustus-gene-7.4-mRNA-1 2 Reactome: R-HSA-2408522;Reactome: R-HSA-379716 "Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation" maker-scaffold6860-size108317-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-9033241 "Peroxisomal protein import" maker-scaffold4536-size213002-augustus-gene-1.5-mRNA-1 4 KEGG: 00520+3.2.1.14;MetaCyc: PWY-6902;MetaCyc: PWY-7822;MetaCyc: PWY-6855 "Amino sugar and nucleotide sugar metabolism";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Chitin degradation I (archaea)" augustus-scaffold511-size829660-processed-gene-5.2-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold91-size1925952-augustus-gene-4.2-mRNA-1 17 Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-6790901;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-2408557 "L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"rRNA modification in the nucleus and cytosol";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis" maker-scaffold22-size1954011-augustus-gene-6.3-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-2022377 "Neutrophil degranulation";"Metabolism of Angiotensinogen to Angiotensins" maker-scaffold807-size664707-augustus-gene-3.3-mRNA-1 5 Reactome: R-HSA-3371571;Reactome: R-HSA-165159;Reactome: R-HSA-166208;Reactome: R-HSA-5674400;Reactome: R-HSA-198323 "HSF1-dependent transactivation";"mTOR signalling";"mTORC1-mediated signalling";"Constitutive Signaling by AKT1 E17K in Cancer";"AKT phosphorylates targets in the cytosol" maker-scaffold1663-size722363-augustus-gene-2.2-mRNA-1 2 Reactome: R-HSA-418457;Reactome: R-HSA-4086398 "cGMP effects";"Ca2+ pathway" maker-scaffold459-size1116651-augustus-gene-10.5-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold319-size979438-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-8849175 "Threonine catabolism" maker-scaffold3043-size296196-augustus-gene-1.10-mRNA-1 3 MetaCyc: PWY-7210;Reactome: R-HSA-499943;KEGG: 00240+3.5.4.12 "Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine metabolism" maker-scaffold17470-size13108-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-5628897;Reactome: R-HSA-611105 "TP53 Regulates Metabolic Genes";"Respiratory electron transport" maker-scaffold1479-size487698-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-6811436;Reactome: R-HSA-8876198 "COPI-independent Golgi-to-ER retrograde traffic";"RAB GEFs exchange GTP for GDP on RABs" maker-scaffold1258-size535493-augustus-gene-4.6-mRNA-1 1 Reactome: R-HSA-5626467 "RHO GTPases activate IQGAPs" maker-scaffold1116-size571106-augustus-gene-2.5-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis" maker-scaffold167-size1229586-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-429947;Reactome: R-HSA-6804115 "Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" maker-scaffold1380-size513153-augustus-gene-4.4-mRNA-1 3 Reactome: R-HSA-8957275;Reactome: R-HSA-381038;Reactome: R-HSA-381426 "Post-translational protein phosphorylation";"XBP1(S) activates chaperone genes";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" augustus-scaffold1108-size1241419-processed-gene-8.0-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" augustus-scaffold976-size610364-processed-gene-1.2-mRNA-1 2 Reactome: R-HSA-8939243;Reactome: R-HSA-3214858 "RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines" augustus-scaffold4656-size192939-processed-gene-0.5-mRNA-1 26 Reactome: R-HSA-6782135;Reactome: R-HSA-5651801;Reactome: R-HSA-4615885;Reactome: R-HSA-5655862;Reactome: R-HSA-110320;Reactome: R-HSA-174411;Reactome: R-HSA-5358565;Reactome: R-HSA-1362277;Reactome: R-HSA-6782210;Reactome: R-HSA-8866654;Reactome: R-HSA-69183;Reactome: R-HSA-69166;Reactome: R-HSA-110312;Reactome: R-HSA-174417;Reactome: R-HSA-5696400;Reactome: R-HSA-6804114;Reactome: R-HSA-5656121;Reactome: R-HSA-174414;Reactome: R-HSA-5685942;Reactome: R-HSA-5696397;Reactome: R-HSA-5656169;Reactome: R-HSA-5358606;Reactome: R-HSA-110314;Reactome: R-HSA-69205;Reactome: R-HSA-174437;Reactome: R-HSA-69091 "Dual incision in TC-NER";"PCNA-Dependent Long Patch Base Excision Repair";"SUMOylation of DNA replication proteins";"Translesion synthesis by POLK";"Translesion Synthesis by POLH";"Polymerase switching on the C-strand of the telomere";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Transcription of E2F targets under negative control by DREAM complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"E3 ubiquitin ligases ubiquitinate target proteins";"Processive synthesis on the lagging strand";"Removal of the Flap Intermediate";"Translesion synthesis by REV1";"Telomere C-strand (Lagging Strand) Synthesis";"Dual Incision in GG-NER";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Translesion synthesis by POLI";"Processive synthesis on the C-strand of the telomere";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Termination of translesion DNA synthesis";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Recognition of DNA damage by PCNA-containing replication complex";"G1/S-Specific Transcription";"Removal of the Flap Intermediate from the C-strand";"Polymerase switching" maker-scaffold167-size1229586-augustus-gene-11.1-mRNA-1 1 Reactome: R-HSA-3214841 "PKMTs methylate histone lysines" maker-scaffold941-size620313-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold4823-size186055-augustus-gene-0.3-mRNA-1 6 Reactome: R-HSA-6781823;Reactome: R-HSA-6782210;Reactome: R-HSA-6798695;Reactome: R-HSA-6781827;Reactome: R-HSA-72163;Reactome: R-HSA-6782135 "Formation of TC-NER Pre-Incision Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Neutrophil degranulation";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"mRNA Splicing - Major Pathway";"Dual incision in TC-NER" maker-scaffold1718-size592992-augustus-gene-4.6-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" maker-scaffold4055-size227119-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-8876725 "Protein methylation" maker-scaffold1281-size527723-augustus-gene-1.12-mRNA-1 22 MetaCyc: PWY-5659;MetaCyc: PWY-6981;MetaCyc: PWY-7238;KEGG: 00500+5.3.1.9;MetaCyc: PWY-622;Reactome: R-HSA-6798695;MetaCyc: PWY-6142;MetaCyc: PWY-7385;Reactome: R-HSA-70263;MetaCyc: PWY-5054;MetaCyc: PWY-3801;KEGG: 00030+5.3.1.9;MetaCyc: PWY-5384;MetaCyc: PWY-5514;MetaCyc: PWY-6992;Reactome: R-HSA-70171;KEGG: 00010+5.3.1.9;MetaCyc: PWY-8013;MetaCyc: PWY-7347;KEGG: 00520+5.3.1.9;MetaCyc: PWY-621;Reactome: R-HSA-5628897 "GDP-mannose biosynthesis";"Chitin biosynthesis";"Sucrose biosynthesis II";"Starch and sucrose metabolism";"Starch biosynthesis";"Neutrophil degranulation";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"1,3-propanediol biosynthesis (engineered)";"Gluconeogenesis";"D-sorbitol biosynthesis I";"Sucrose degradation II (sucrose synthase)";"Pentose phosphate pathway";"Sucrose degradation IV (sucrose phosphorylase)";"UDP-N-acetyl-D-galactosamine biosynthesis II";"1,5-anhydrofructose degradation";"Glycolysis";"Glycolysis / Gluconeogenesis";"UDP-N-acetyl-D-galactosamine biosynthesis III";"Sucrose biosynthesis III";"Amino sugar and nucleotide sugar metabolism";"Sucrose degradation III (sucrose invertase)";"TP53 Regulates Metabolic Genes" maker-scaffold2502-size349564-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-203927 "MicroRNA (miRNA) biogenesis" maker-scaffold10015-size41914-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1757-size445936-augustus-gene-2.4-mRNA-1 6 Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257 "EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion" maker-scaffold4419-size206001-augustus-gene-1.6-mRNA-1 9 Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-5693568;Reactome: R-HSA-5685942;Reactome: R-HSA-5693616;Reactome: R-HSA-5693579;Reactome: R-HSA-6804756;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554 "Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Resolution of D-loop Structures through Holliday Junction Intermediates";"HDR through Homologous Recombination (HRR)";"Presynaptic phase of homologous DNA pairing and strand exchange";"Homologous DNA Pairing and Strand Exchange";"Regulation of TP53 Activity through Phosphorylation";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)" maker-scaffold8828-size77153-augustus-gene-0.1-mRNA-1 33 Reactome: R-HSA-5663220;Reactome: R-HSA-3371453;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168325;Reactome: R-HSA-1169408;Reactome: R-HSA-2467813;Reactome: R-HSA-168271;Reactome: R-HSA-159236;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-68877;Reactome: R-HSA-3232142;Reactome: R-HSA-5619107;Reactome: R-HSA-159227;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-159230;Reactome: R-HSA-2500257;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-4615885;Reactome: R-HSA-9648025;Reactome: R-HSA-168333;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-9609690 "RHO GTPases Activate Formins";"Regulation of HSF1-mediated heat shock response";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Viral Messenger RNA Synthesis";"ISG15 antiviral mechanism";"Separation of Sister Chromatids";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Mitotic Prometaphase";"SUMOylation of ubiquitinylation proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP independent Mature mRNA";"snRNP Assembly";"Transcriptional regulation by small RNAs";"Transport of the SLBP Dependant Mature mRNA";"Resolution of Sister Chromatid Cohesion";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"SUMOylation of DNA replication proteins";"EML4 and NUDC in mitotic spindle formation";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"HCMV Early Events" maker-scaffold6863-size107371-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-8964038 "Neutrophil degranulation";"LDL clearance" maker-scaffold8846-size103284-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-2470946 "Cohesin Loading onto Chromatin" maker-scaffold5048-size239644-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-8949613;Reactome: R-HSA-163210 "Cristae formation";"Formation of ATP by chemiosmotic coupling" maker-scaffold2931-size305405-augustus-gene-2.3-mRNA-1 3 MetaCyc: PWY-6368;MetaCyc: PWY-6367;KEGG: 04070+3.1.3.78 "3-phosphoinositide degradation";"D-myo-inositol-5-phosphate metabolism";"Phosphatidylinositol signaling system" maker-scaffold776-size684516-augustus-gene-4.2-mRNA-1 1 MetaCyc: PWY-7799 "Arg/N-end rule pathway (eukaryotic)" maker-scaffold1513-size517322-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-4419969 "Depolymerisation of the Nuclear Lamina" maker-scaffold1122-size567286-augustus-gene-4.5-mRNA-1 2 Reactome: R-HSA-804914;Reactome: R-HSA-9029569 "Transport of fatty acids";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux" maker-scaffold133-size1635514-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-186797 "Signaling by PDGF" maker-scaffold418-size897063-augustus-gene-5.5-mRNA-1 1 Reactome: R-HSA-4551638 "SUMOylation of chromatin organization proteins" maker-scaffold17626-size13501-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-5362517;Reactome: R-HSA-204174 "Signaling by Retinoic Acid";"Regulation of pyruvate dehydrogenase (PDH) complex" maker-scaffold30297-size7191-augustus-gene-0.0-mRNA-1 5 Reactome: R-HSA-2426168;Reactome: R-HSA-9029558;Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-75105 "Activation of gene expression by SREBF (SREBP)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"Fatty acyl-CoA biosynthesis" maker-scaffold521-size818013-augustus-gene-6.2-mRNA-1 1 Reactome: R-HSA-5601884 "PIWI-interacting RNA (piRNA) biogenesis" maker-scaffold6288-size129998-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-416476;Reactome: R-HSA-388479 "G alpha (q) signalling events";"Vasopressin-like receptors" maker-scaffold577-size1394770-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-9037629 "Lewis blood group biosynthesis" maker-scaffold920-size630926-augustus-gene-2.1-mRNA-1 3 Reactome: R-HSA-416482;Reactome: R-HSA-193648;Reactome: R-HSA-194840 "G alpha (12/13) signalling events";"NRAGE signals death through JNK";"Rho GTPase cycle" maker-scaffold3533-size256928-augustus-gene-1.6-mRNA-1 13 Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902 "Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation" maker-scaffold1281-size527723-augustus-gene-1.9-mRNA-1 22 MetaCyc: PWY-6981;MetaCyc: PWY-5659;MetaCyc: PWY-622;KEGG: 00500+5.3.1.9;MetaCyc: PWY-7238;MetaCyc: PWY-5054;Reactome: R-HSA-70263;MetaCyc: PWY-7385;MetaCyc: PWY-6142;Reactome: R-HSA-6798695;MetaCyc: PWY-3801;MetaCyc: PWY-5384;MetaCyc: PWY-5514;MetaCyc: PWY-6992;KEGG: 00030+5.3.1.9;KEGG: 00010+5.3.1.9;Reactome: R-HSA-70171;MetaCyc: PWY-621;Reactome: R-HSA-5628897;MetaCyc: PWY-8013;MetaCyc: PWY-7347;KEGG: 00520+5.3.1.9 "Chitin biosynthesis";"GDP-mannose biosynthesis";"Starch biosynthesis";"Starch and sucrose metabolism";"Sucrose biosynthesis II";"D-sorbitol biosynthesis I";"Gluconeogenesis";"1,3-propanediol biosynthesis (engineered)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Neutrophil degranulation";"Sucrose degradation II (sucrose synthase)";"Sucrose degradation IV (sucrose phosphorylase)";"UDP-N-acetyl-D-galactosamine biosynthesis II";"1,5-anhydrofructose degradation";"Pentose phosphate pathway";"Glycolysis / Gluconeogenesis";"Glycolysis";"Sucrose degradation III (sucrose invertase)";"TP53 Regulates Metabolic Genes";"UDP-N-acetyl-D-galactosamine biosynthesis III";"Sucrose biosynthesis III";"Amino sugar and nucleotide sugar metabolism" maker-scaffold266-size1047221-augustus-gene-3.1-mRNA-1 1 MetaCyc: PWY-7942 "5-oxo-L-proline metabolism" maker-scaffold182-size1460996-augustus-gene-13.6-mRNA-1 6 MetaCyc: PWY-7980;KEGG: 00195+7.1.2.2;Reactome: R-HSA-163210;Reactome: R-HSA-1268020;Reactome: R-HSA-8949613;KEGG: 00190+7.1.2.2 "ATP biosynthesis";"Photosynthesis";"Formation of ATP by chemiosmotic coupling";"Mitochondrial protein import";"Cristae formation";"Oxidative phosphorylation" maker-scaffold285-size1013099-augustus-gene-4.1-mRNA-1 3 MetaCyc: PWY-7546;Reactome: R-HSA-5358493;MetaCyc: PWY-6482 "Diphthamide biosynthesis II (eukaryotes)";"Synthesis of diphthamide-EEF2";"Diphthamide biosynthesis I (archaea)" maker-scaffold13145-size33089-augustus-gene-0.2-mRNA-1 6 MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884;Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84 "Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I";"Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis" maker-scaffold230-size1089831-augustus-gene-9.7-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" augustus-scaffold87-size1468815-processed-gene-11.2-mRNA-1 11 MetaCyc: PWY-7391;MetaCyc: PWY-7560;KEGG: 00900+5.3.3.2;Reactome: R-HSA-191273;MetaCyc: PWY-922;MetaCyc: PWY-6859;MetaCyc: PWY-6383;MetaCyc: PWY-7524;MetaCyc: PWY-5123;MetaCyc: PWY-7102;MetaCyc: PWY-6174 "Isoprene biosynthesis II (engineered)";"Methylerythritol phosphate pathway II";"Terpenoid backbone biosynthesis";"Cholesterol biosynthesis";"Mevalonate pathway I";"All-trans-farnesol biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"Mevalonate pathway III (archaea)";"Trans, trans-farnesyl diphosphate biosynthesis";"Bisabolene biosynthesis (engineered)";"Mevalonate pathway II (archaea)" maker-scaffold273-size1031916-augustus-gene-7.3-mRNA-1 19 Reactome: R-HSA-8866423;Reactome: R-HSA-8856825;Reactome: R-HSA-3000484;Reactome: R-HSA-202733;Reactome: R-HSA-8856828;Reactome: R-HSA-8964026;Reactome: R-HSA-8964041;Reactome: R-HSA-8964038;Reactome: R-HSA-381426;Reactome: R-HSA-3000471;Reactome: R-HSA-8963901;Reactome: R-HSA-432142;Reactome: R-HSA-5686938;Reactome: R-HSA-975634;Reactome: R-HSA-8963888;Reactome: R-HSA-8957275;Reactome: R-HSA-8964046;Reactome: R-HSA-3000480;Reactome: R-HSA-3000497 "VLDL assembly";"Cargo recognition for clathrin-mediated endocytosis";"Scavenging by Class F Receptors";"Cell surface interactions at the vascular wall";"Clathrin-mediated endocytosis";"Chylomicron clearance";"LDL remodeling";"LDL clearance";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Scavenging by Class B Receptors";"Chylomicron remodeling";"Platelet sensitization by LDL";"Regulation of TLR by endogenous ligand";"Retinoid metabolism and transport";"Chylomicron assembly";"Post-translational protein phosphorylation";"VLDL clearance";"Scavenging by Class A Receptors";"Scavenging by Class H Receptors" maker-scaffold209-size1124774-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-191859 "snRNP Assembly" maker-scaffold546-size810909-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold514-size822885-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" augustus-scaffold1560-size473978-processed-gene-1.2-mRNA-1 2 Reactome: R-HSA-1989781;Reactome: R-HSA-2151201 "PPARA activates gene expression";"Transcriptional activation of mitochondrial biogenesis" maker-scaffold757-size686786-augustus-gene-2.3-mRNA-1 2 MetaCyc: PWY-6281;KEGG: 00970+6.1.1.11 "L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Aminoacyl-tRNA biosynthesis" maker-scaffold3255-size278521-augustus-gene-1.5-mRNA-1 4 KEGG: 00480+2.5.1.16;KEGG: 00330+2.5.1.16;Reactome: R-HSA-351202;KEGG: 00270+2.5.1.16 "Glutathione metabolism";"Arginine and proline metabolism";"Metabolism of polyamines";"Cysteine and methionine metabolism" maker-scaffold2885-size306975-augustus-gene-2.6-mRNA-1 5 MetaCyc: PWY-8013;MetaCyc: PWY-6749;KEGG: 00250+2.6.1.16;KEGG: 00520+2.6.1.16;Reactome: R-HSA-446210 "UDP-N-acetyl-D-galactosamine biosynthesis III";"CMP-legionaminate biosynthesis I";"Alanine, aspartate and glutamate metabolism";"Amino sugar and nucleotide sugar metabolism";"Synthesis of UDP-N-acetyl-glucosamine" maker-scaffold5048-size239644-augustus-gene-1.3-mRNA-1 11 Reactome: R-HSA-5696400;Reactome: R-HSA-6782135;Reactome: R-HSA-5651801;Reactome: R-HSA-174430;Reactome: R-HSA-68962;Reactome: R-HSA-68952;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-5696397;Reactome: R-HSA-6782210;Reactome: R-HSA-110314 "Dual Incision in GG-NER";"Dual incision in TC-NER";"PCNA-Dependent Long Patch Base Excision Repair";"Telomere C-strand synthesis initiation";"Activation of the pre-replicative complex";"DNA replication initiation";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Recognition of DNA damage by PCNA-containing replication complex" maker-scaffold668-size718058-augustus-gene-1.1-mRNA-1 7 Reactome: R-HSA-69656;Reactome: R-HSA-1362300;Reactome: R-HSA-1538133;Reactome: R-HSA-156711;Reactome: R-HSA-69202;Reactome: R-HSA-69205;Reactome: R-HSA-1362277 "Cyclin A:Cdk2-associated events at S phase entry";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"G0 and Early G1";"Polo-like kinase mediated events";"Cyclin E associated events during G1/S transition";"G1/S-Specific Transcription";"Transcription of E2F targets under negative control by DREAM complex" maker-scaffold960-size992493-augustus-gene-8.7-mRNA-1 15 Reactome: R-HSA-167243;Reactome: R-HSA-167242;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-6796648;Reactome: R-HSA-167238;Reactome: R-HSA-112382;Reactome: R-HSA-674695;Reactome: R-HSA-167246;Reactome: R-HSA-167200;Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-9603505 "Tat-mediated HIV elongation arrest and recovery";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Pre-transcription Events";"Tat-mediated elongation of the HIV-1 transcript";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"NTRK3 as a dependence receptor" maker-scaffold2096-size393277-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-8854691;Reactome: R-HSA-6785807;KEGG: 04660+2.7.10.2 "Interleukin-20 family signaling";"Interleukin-4 and Interleukin-13 signaling";"T cell receptor signaling pathway" maker-scaffold13054-size21004-augustus-gene-0.1-mRNA-1 8 KEGG: 04926+2.7.11.1;Reactome: R-HSA-6791226;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1 "Relaxin signaling pathway";"Major pathway of rRNA processing in the nucleolus and cytosol";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"Thermogenesis";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway" maker-scaffold13407-size27508-augustus-gene-0.0-mRNA-1 1 Reactome: R-HSA-8949613 "Cristae formation" maker-scaffold241-size1969003-augustus-gene-15.4-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold1281-size527723-augustus-gene-4.6-mRNA-1 2 KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685 "Glutathione metabolism";"Detoxification of Reactive Oxygen Species" maker-scaffold293-size1005519-augustus-gene-5.1-mRNA-1 4 Reactome: R-HSA-6794361;Reactome: R-HSA-5250958;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828 "Neurexins and neuroligins";"Toxicity of botulinum toxin type B (BoNT/B)";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis" maker-scaffold3189-size281016-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold2402-size355926-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-975957 "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold1092-size574751-augustus-gene-4.4-mRNA-1 14 MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-7601;MetaCyc: PWY-5080;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-5972;MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-8041;MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199 "Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Stearate biosynthesis I (animals)";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation" maker-scaffold2395-size355334-augustus-gene-2.6-mRNA-1 8 KEGG: 00520+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00500+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00052+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1 "Amino sugar and nucleotide sugar metabolism";"Glycolysis";"Starch and sucrose metabolism";"Fructose and mannose metabolism";"Galactose metabolism";"Streptomycin biosynthesis";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis" maker-scaffold63-size1621153-augustus-gene-8.7-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold198-size1137919-augustus-gene-9.1-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" augustus-scaffold90-size1469227-processed-gene-10.0-mRNA-1 2 Reactome: R-HSA-9010553;Reactome: R-HSA-975957 "Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold165-size1233282-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold735-size695327-augustus-gene-3.3-mRNA-1 6 MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782 "Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis" maker-scaffold941-size620313-augustus-gene-5.2-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold1327-size663912-augustus-gene-2.9-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1601-size462555-augustus-gene-3.11-mRNA-1 1 Reactome: R-HSA-8949613 "Cristae formation" maker-scaffold904-size631665-augustus-gene-5.3-mRNA-1 2 Reactome: R-HSA-5357905;Reactome: R-HSA-5357956 "Regulation of TNFR1 signaling";"TNFR1-induced NFkappaB signaling pathway" maker-scaffold737-size693857-augustus-gene-5.6-mRNA-1 2 Reactome: R-HSA-442982;Reactome: R-HSA-5673001 "Ras activation upon Ca2+ influx through NMDA receptor";"RAF/MAP kinase cascade" maker-scaffold8738-size67054-augustus-gene-0.2-mRNA-1 7 KEGG: 00790+1.14.16.1;KEGG: 00360+1.14.16.1;Reactome: R-HSA-2160456;KEGG: 00400+1.14.16.1;Reactome: R-HSA-8964208;MetaCyc: PWY-6134;MetaCyc: PWY-7158 "Folate biosynthesis";"Phenylalanine metabolism";"Phenylketonuria";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Phenylalanine metabolism";"L-tyrosine biosynthesis IV";"L-phenylalanine degradation V" maker-scaffold92-size1446267-augustus-gene-3.1-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold5706-size149207-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-6783310;Reactome: R-HSA-5693568 "Fanconi Anemia Pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates" maker-scaffold10986-size32515-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" augustus-scaffold10840-size36569-processed-gene-0.0-mRNA-1 4 MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00520+3.2.1.14;MetaCyc: PWY-6855 "Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)" maker-scaffold58-size1632902-augustus-gene-10.1-mRNA-1 13 Reactome: R-HSA-6802946;KEGG: 04926+2.7.11.1;Reactome: R-HSA-5674135;KEGG: 05165+2.7.11.1;Reactome: R-HSA-6802955;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-6802948;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-6802952;Reactome: R-HSA-9649948;KEGG: 04150+2.7.11.1 "Signaling by moderate kinase activity BRAF mutants";"Relaxin signaling pathway";"MAP2K and MAPK activation";"Human papillomavirus infection";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Thermogenesis";"PI3K-Akt signaling pathway";"Signaling by high-kinase activity BRAF mutants";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Signaling by BRAF and RAF fusions";"Signaling downstream of RAS mutants";"mTOR signaling pathway" maker-scaffold3539-size255017-augustus-gene-1.9-mRNA-1 1 Reactome: R-HSA-6799198 "Complex I biogenesis" maker-scaffold1821-size433754-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold1494-size484611-augustus-gene-3.8-mRNA-1 56 Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-75815;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-1169091;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-450408 "Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Activation of NF-kappaB in B cells";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA" maker-scaffold2665-size465952-augustus-gene-1.3-mRNA-1 7 MetaCyc: PWY-5466;MetaCyc: PWY-7445;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5469 "Matairesinol biosynthesis";"Luteolin triglucuronide degradation";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Sesamin biosynthesis" maker-scaffold705-size705670-augustus-gene-2.6-mRNA-1 16 Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-72695 "Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex" maker-scaffold2144-size384911-augustus-gene-2.7-mRNA-1 1 Reactome: R-HSA-1474228 "Degradation of the extracellular matrix" maker-scaffold31-size1827111-augustus-gene-12.1-mRNA-1 5 Reactome: R-HSA-5628897;Reactome: R-HSA-75035;Reactome: R-HSA-5625740;Reactome: R-HSA-1445148;Reactome: R-HSA-111447 "TP53 Regulates Metabolic Genes";"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"RHO GTPases activate PKNs";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Activation of BAD and translocation to mitochondria" maker-scaffold75-size1537034-augustus-gene-8.5-mRNA-1 1 Reactome: R-HSA-3299685 "Detoxification of Reactive Oxygen Species" maker-scaffold6997-size103437-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold1332-size524712-augustus-gene-1.4-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold1682-size453968-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold5086-size175562-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-209968 "Thyroxine biosynthesis" maker-scaffold4316-size229591-augustus-gene-1.5-mRNA-1 13 MetaCyc: PWY-7410;MetaCyc: PWY-7721;MetaCyc: PWY-7659;MetaCyc: PWY-7141;MetaCyc: PWY-7709;MetaCyc: PWY-7736;KEGG: 00900+2.5.1.10+2.5.1.1;MetaCyc: PWY-7182;MetaCyc: PWY-7102;MetaCyc: PWY-5122;MetaCyc: PWY-5123;MetaCyc: PWY-6859;MetaCyc: PWY-6383 "Ipsdienol biosynthesis";"Methyl phomopsenoate biosynthesis";"Viridicatumtoxin biosynthesis";"(3S)-linalool biosynthesis";"(3R)-linalool biosynthesis";"Stellatic acid biosynthesis";"Terpenoid backbone biosynthesis";"Linalool biosynthesis I";"Bisabolene biosynthesis (engineered)";"Geranyl diphosphate biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"All-trans-farnesol biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis" maker-scaffold11657-size43021-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-430039 "mRNA Splicing - Major Pathway";"mRNA decay by 5' to 3' exoribonuclease" maker-scaffold3744-size242937-augustus-gene-0.2-mRNA-1 4 Reactome: R-HSA-196108;Reactome: R-HSA-211976;Reactome: R-HSA-2395516;Reactome: R-HSA-5579026 "Pregnenolone biosynthesis";"Endogenous sterols";"Electron transport from NADPH to Ferredoxin";"Defective CYP11A1 causes Adrenal insufficiency, congenital, with 46,XY sex reversal (AICSR)" maker-scaffold8912-size60967-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-5676934 "Protein repair" maker-scaffold1721-size452177-augustus-gene-1.1-mRNA-1 7 KEGG: 00240+2.7.4.9;MetaCyc: PWY-7198;MetaCyc: PWY-7184;MetaCyc: PWY-7210;MetaCyc: PWY-6545;MetaCyc: PWY-7197;MetaCyc: PWY-7187 "Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotide phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis II" maker-scaffold6119-size141232-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-204626 "Hypusine synthesis from eIF5A-lysine" maker-scaffold1975-size408740-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-73621 "Pyrimidine catabolism" augustus-scaffold17434-size17205-processed-gene-0.0-mRNA-1 5 MetaCyc: PWY-6121;Reactome: R-HSA-73817;MetaCyc: PWY-6277;MetaCyc: PWY-6122;KEGG: 00230+6.3.5.3 "5-aminoimidazole ribonucleotide biosynthesis I";"Purine ribonucleoside monophosphate biosynthesis";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis II";"Purine metabolism" maker-scaffold1462-size492544-augustus-gene-2.3-mRNA-1 9 Reactome: R-HSA-445355;Reactome: R-HSA-6802946;Reactome: R-HSA-6798695;Reactome: R-HSA-6802955;Reactome: R-HSA-5674135;Reactome: R-HSA-114608;Reactome: R-HSA-6802952;Reactome: R-HSA-6802948;Reactome: R-HSA-9649948 "Smooth Muscle Contraction";"Signaling by moderate kinase activity BRAF mutants";"Neutrophil degranulation";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"MAP2K and MAPK activation";"Platelet degranulation";"Signaling by BRAF and RAF fusions";"Signaling by high-kinase activity BRAF mutants";"Signaling downstream of RAS mutants" maker-scaffold7944-size81252-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-110362 "POLB-Dependent Long Patch Base Excision Repair" maker-scaffold2401-size356374-augustus-gene-2.8-mRNA-1 7 KEGG: 00564+3.1.4.4;Reactome: R-HSA-2029485;KEGG: 00565+3.1.4.4;MetaCyc: PWY-3561;MetaCyc: PWY-7039;Reactome: R-HSA-1483166;Reactome: R-HSA-1483148 "Glycerophospholipid metabolism";"Role of phospholipids in phagocytosis";"Ether lipid metabolism";"Choline biosynthesis III";"Phosphatidate metabolism, as a signaling molecule";"Synthesis of PA";"Synthesis of PG" maker-scaffold666-size716562-augustus-gene-6.5-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold1224-size792652-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-8873719 "RAB geranylgeranylation" maker-scaffold1927-size553482-augustus-gene-4.6-mRNA-1 3 Reactome: R-HSA-192456;KEGG: 00561+3.1.1.3;MetaCyc: PWY-6857 "Digestion of dietary lipid";"Glycerolipid metabolism";"Retinol biosynthesis" maker-scaffold1785-size440676-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-6782315;MetaCyc: PWY-8106;MetaCyc: PWY-6700 "tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis III (queuosine salvage)";"Queuosine biosynthesis I (de novo)" maker-scaffold6280-size127643-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold2766-size345655-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-425381 "Bicarbonate transporters" maker-scaffold4882-size187811-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-2024096 "HS-GAG degradation" maker-scaffold1450-size512895-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-389957 "Prefoldin mediated transfer of substrate to CCT/TriC" maker-scaffold3960-size230789-augustus-gene-1.8-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-5628897 "Respiratory electron transport";"TP53 Regulates Metabolic Genes" maker-scaffold381-size945626-augustus-gene-7.3-mRNA-1 5 Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-390471;Reactome: R-HSA-6814122;Reactome: R-HSA-389957 "Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Prefoldin mediated transfer of substrate to CCT/TriC" maker-scaffold298-size1000112-augustus-gene-8.1-mRNA-1 2 Reactome: R-HSA-8856825;Reactome: R-HSA-8856828 "Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis" maker-scaffold4062-size339462-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-418890;Reactome: R-HSA-3295583 "Role of second messengers in netrin-1 signaling";"TRP channels" maker-scaffold1996-size404908-augustus-gene-0.1-mRNA-1 5 KEGG: 00600+3.2.1.22;KEGG: 00561+3.2.1.22;KEGG: 00052+3.2.1.22;MetaCyc: PWY-6527;KEGG: 00603+3.2.1.22 "Sphingolipid metabolism";"Glycerolipid metabolism";"Galactose metabolism";"Stachyose degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series" augustus-scaffold1666-size445333-processed-gene-2.0-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold366-size939293-augustus-gene-4.1-mRNA-1 4 Reactome: R-HSA-446388;Reactome: R-HSA-3000170;Reactome: R-HSA-373753;Reactome: R-HSA-114608 "Regulation of cytoskeletal remodeling and cell spreading by IPP complex components";"Syndecan interactions";"Nephrin family interactions";"Platelet degranulation" maker-scaffold4305-size211169-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-425561 "Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Sodium/Calcium exchangers" maker-scaffold5085-size177836-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-163125 "Post-translational modification: synthesis of GPI-anchored proteins" maker-scaffold7113-size284976-augustus-gene-1.4-mRNA-1 13 Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902 "Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation" maker-scaffold1644-size691065-augustus-gene-5.7-mRNA-1 2 Reactome: R-HSA-983168;Reactome: R-HSA-8951664 "Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation" maker-scaffold1193-size553982-augustus-gene-2.1-mRNA-1 4 Reactome: R-HSA-6807505;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16 "RNA polymerase II transcribes snRNA genes";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation" maker-scaffold1437-size497722-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" maker-scaffold1853-size510987-augustus-gene-2.1-mRNA-1 3 Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "MHC class II antigen presentation";"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold43-size1732329-augustus-gene-5.3-mRNA-1 4 Reactome: R-HSA-2132295;Reactome: R-HSA-68884;Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "MHC class II antigen presentation";"Mitotic Telophase/Cytokinesis";"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold222-size1096812-augustus-gene-8.1-mRNA-1 1 Reactome: R-HSA-5662702 "Melanin biosynthesis" maker-scaffold155-size1267149-augustus-gene-6.12-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold4952-size326310-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold1578-size470774-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-425366 "Transport of bile salts and organic acids, metal ions and amine compounds" maker-scaffold4666-size193595-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold735-size695327-augustus-gene-1.3-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I" maker-scaffold2481-size352000-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-2142691;Reactome: R-HSA-2142700 "Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Synthesis of Lipoxins (LX)" maker-scaffold1924-size415959-augustus-gene-3.3-mRNA-1 2 MetaCyc: PWY-6502;Reactome: R-HSA-2393930 "8-oxo-(d)GTP detoxification I";"Phosphate bond hydrolysis by NUDT proteins" maker-scaffold7261-size97747-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781 "Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression" maker-scaffold171-size1223376-augustus-gene-5.1-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-532668 "Neutrophil degranulation";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle" maker-scaffold1050-size585030-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold3165-size284171-augustus-gene-1.11-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold7381-size94292-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-5389840;Reactome: R-HSA-5368286;Reactome: R-HSA-5419276 "Mitochondrial translation elongation";"Mitochondrial translation initiation";"Mitochondrial translation termination" maker-scaffold80886-size9269-augustus-gene-0.2-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold11797-size26406-augustus-gene-0.2-mRNA-1 22 Reactome: R-HSA-70171;KEGG: 00010+5.3.1.9;KEGG: 00520+5.3.1.9;MetaCyc: PWY-7347;MetaCyc: PWY-8013;Reactome: R-HSA-5628897;MetaCyc: PWY-621;MetaCyc: PWY-3801;KEGG: 00030+5.3.1.9;MetaCyc: PWY-5384;MetaCyc: PWY-5514;MetaCyc: PWY-6992;MetaCyc: PWY-7238;MetaCyc: PWY-622;KEGG: 00500+5.3.1.9;MetaCyc: PWY-7385;MetaCyc: PWY-6142;Reactome: R-HSA-6798695;Reactome: R-HSA-70263;MetaCyc: PWY-5054;MetaCyc: PWY-5659;MetaCyc: PWY-6981 "Glycolysis";"Glycolysis / Gluconeogenesis";"Amino sugar and nucleotide sugar metabolism";"Sucrose biosynthesis III";"UDP-N-acetyl-D-galactosamine biosynthesis III";"TP53 Regulates Metabolic Genes";"Sucrose degradation III (sucrose invertase)";"Sucrose degradation II (sucrose synthase)";"Pentose phosphate pathway";"Sucrose degradation IV (sucrose phosphorylase)";"UDP-N-acetyl-D-galactosamine biosynthesis II";"1,5-anhydrofructose degradation";"Sucrose biosynthesis II";"Starch biosynthesis";"Starch and sucrose metabolism";"1,3-propanediol biosynthesis (engineered)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Neutrophil degranulation";"Gluconeogenesis";"D-sorbitol biosynthesis I";"GDP-mannose biosynthesis";"Chitin biosynthesis" maker-scaffold338-size969700-augustus-gene-2.2-mRNA-1 16 Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72702;Reactome: R-HSA-156827 "Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold730-size696878-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-1483191 "Synthesis of PC" maker-scaffold1088-size573517-augustus-gene-4.11-mRNA-1 1 Reactome: R-HSA-5601884 "PIWI-interacting RNA (piRNA) biogenesis" maker-scaffold3027-size298051-augustus-gene-1.5-mRNA-1 33 Reactome: R-HSA-167162;Reactome: R-HSA-167160;Reactome: R-HSA-69231;Reactome: R-HSA-5696395;Reactome: R-HSA-8939236;Reactome: R-HSA-167158;Reactome: R-HSA-73863;Reactome: R-HSA-113418;Reactome: R-HSA-69656;Reactome: R-HSA-76042;Reactome: R-HSA-6796648;Reactome: R-HSA-69273;Reactome: R-HSA-69202;Reactome: R-HSA-73762;Reactome: R-HSA-73779;Reactome: R-HSA-167172;Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-73776;Reactome: R-HSA-167152;Reactome: R-HSA-112382;Reactome: R-HSA-73772;Reactome: R-HSA-167246;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-6782135;Reactome: R-HSA-77075;Reactome: R-HSA-6781823;Reactome: R-HSA-427413;Reactome: R-HSA-6781827;Reactome: R-HSA-6782210;Reactome: R-HSA-72086;Reactome: R-HSA-167200 "RNA Polymerase II HIV Promoter Escape";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Cyclin D associated events in G1";"Formation of Incision Complex in GG-NER";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase I Transcription Termination";"Formation of the Early Elongation Complex";"Cyclin A:Cdk2-associated events at S phase entry";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"TP53 Regulates Transcription of DNA Repair Genes";"Cyclin A/B1/B2 associated events during G2/M transition";"Cyclin E associated events during G1/S transition";"RNA Polymerase I Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Transcription of the HIV genome";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Promoter Escape";"Formation of HIV elongation complex in the absence of HIV Tat";"Formation of RNA Pol II elongation complex";"RNA Polymerase I Promoter Escape";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"Dual incision in TC-NER";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of TC-NER Pre-Incision Complex";"NoRC negatively regulates rRNA expression";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Capping";"Formation of HIV-1 elongation complex containing HIV-1 Tat" maker-scaffold6063-size135609-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold1481-size481709-augustus-gene-3.6-mRNA-1 5 Reactome: R-HSA-6804757;Reactome: R-HSA-5674400;Reactome: R-HSA-389357;Reactome: R-HSA-1257604;Reactome: R-HSA-5218920 "Regulation of TP53 Degradation";"Constitutive Signaling by AKT1 E17K in Cancer";"CD28 dependent PI3K/Akt signaling";"PIP3 activates AKT signaling";"VEGFR2 mediated vascular permeability" maker-scaffold1936-size415324-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" augustus-scaffold7526-size89691-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold1811-size937344-augustus-gene-6.1-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" maker-scaffold2112-size394116-augustus-gene-2.9-mRNA-1 56 Reactome: R-HSA-1236978;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-4641257;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-174154;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-75815;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-4608870 "Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of AXIN";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Ubiquitin-dependent degradation of Cyclin D";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Asymmetric localization of PCP proteins" maker-scaffold2185-size384366-augustus-gene-2.6-mRNA-1 3 Reactome: R-HSA-6811438;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440 "Intra-Golgi traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network" augustus-scaffold3077-size572549-processed-gene-4.0-mRNA-1 3 KEGG: 00561+2.7.1.30;MetaCyc: PWY-4261;Reactome: R-HSA-75109 "Glycerolipid metabolism";"Glycerol degradation I";"Triglyceride biosynthesis" maker-scaffold5587-size154872-augustus-gene-0.4-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold3075-size292214-augustus-gene-1.1-mRNA-1 6 KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;KEGG: 00564+2.7.1.107;KEGG: 00561+2.7.1.107;MetaCyc: PWY-7039;MetaCyc: PWY-7817 "Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Glycerophospholipid metabolism";"Glycerolipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)" augustus-scaffold6244-size212837-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-5689880;Reactome: R-HSA-110320 "Ub-specific processing proteases";"Translesion Synthesis by POLH" maker-scaffold538-size806317-augustus-gene-3.4-mRNA-1 3 MetaCyc: PWY-7803;MetaCyc: PWY-6689;Reactome: R-HSA-6784531 "Trna splicing II";"Trna splicing I";"tRNA processing in the nucleus" maker-scaffold1317-size522717-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-1660661 "Sphingolipid de novo biosynthesis" maker-scaffold5270-size167834-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-156842 "Eukaryotic Translation Elongation" maker-scaffold2931-size305405-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-917729;Reactome: R-HSA-162588 "Endosomal Sorting Complex Required For Transport (ESCRT)";"Budding and maturation of HIV virion" maker-scaffold1459-size487637-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-1483166;Reactome: R-HSA-1483148 "Synthesis of PA";"Synthesis of PG" maker-scaffold4538-size204480-augustus-gene-1.6-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" maker-scaffold1049-size585523-augustus-gene-2.2-mRNA-1 56 Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-5689880;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-1169091;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-75815;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-1236978;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603 "GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Ub-specific processing proteases";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Activation of NF-kappaB in B cells";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"ER-Phagosome pathway";"Hedgehog 'on' state";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Ubiquitin-dependent degradation of Cyclin D";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"Cross-presentation of soluble exogenous antigens (endosomes)";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases" maker-scaffold719-size703734-augustus-gene-1.4-mRNA-1 7 Reactome: R-HSA-446205;KEGG: 00520+5.4.2.8;MetaCyc: PWY-5659;MetaCyc: PWY-882;KEGG: 00051+5.4.2.8;MetaCyc: PWY-7456;MetaCyc: PWY-7586 "Synthesis of GDP-mannose";"Amino sugar and nucleotide sugar metabolism";"GDP-mannose biosynthesis";"L-ascorbate biosynthesis I (L-galactose pathway)";"Fructose and mannose metabolism";"Beta-(1,4)-mannan degradation";"Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation" maker-scaffold960-size992493-augustus-gene-7.6-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" maker-scaffold3696-size246225-augustus-gene-1.5-mRNA-1 2 KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685 "Glutathione metabolism";"Detoxification of Reactive Oxygen Species" maker-scaffold1327-size663912-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold8996-size63934-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold2974-size297681-augustus-gene-1.4-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold2575-size333099-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold2223-size376070-augustus-gene-1.5-mRNA-1 13 Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553 "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs" maker-scaffold1573-size471180-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-429958 "mRNA decay by 3' to 5' exoribonuclease" maker-scaffold2551-size687948-augustus-gene-1.2-mRNA-1 8 Reactome: R-HSA-69183;Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-68952;Reactome: R-HSA-174411;Reactome: R-HSA-68962;Reactome: R-HSA-113501;Reactome: R-HSA-174430 "Processive synthesis on the lagging strand";"Removal of the Flap Intermediate";"Polymerase switching";"DNA replication initiation";"Polymerase switching on the C-strand of the telomere";"Activation of the pre-replicative complex";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Telomere C-strand synthesis initiation" maker-scaffold5225-size296294-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-1221632 "Meiotic synapsis" maker-scaffold703-size704358-augustus-gene-6.6-mRNA-1 2 MetaCyc: PWY-7800;MetaCyc: PWY-7799 "Ac/N-end rule pathway";"Arg/N-end rule pathway (eukaryotic)" maker-scaffold3630-size249649-augustus-gene-1.5-mRNA-1 3 Reactome: R-HSA-430039;Reactome: R-HSA-450385;Reactome: R-HSA-450513 "mRNA decay by 5' to 3' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA" maker-scaffold921-size780965-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" augustus-scaffold288-size1017370-processed-gene-7.0-mRNA-1 3 Reactome: R-HSA-1799339;Reactome: R-HSA-1236974;Reactome: R-HSA-9609523 "SRP-dependent cotranslational protein targeting to membrane";"ER-Phagosome pathway";"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane" augustus-scaffold2374-size359636-processed-gene-1.0-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-72649 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation" maker-scaffold195-size1135307-augustus-gene-5.6-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold1292-size529619-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" augustus-scaffold303-size996857-processed-gene-8.0-mRNA-1 6 Reactome: R-HSA-6798695;Reactome: R-HSA-9033241;Reactome: R-HSA-9615017;Reactome: R-HSA-3299685;KEGG: 00630+1.11.1.6;KEGG: 00380+1.11.1.6 "Neutrophil degranulation";"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Detoxification of Reactive Oxygen Species";"Glyoxylate and dicarboxylate metabolism";"Tryptophan metabolism" augustus-scaffold132-size1336397-processed-gene-6.0-mRNA-1 7 MetaCyc: PWY-7511;Reactome: R-HSA-6781823;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-427413;Reactome: R-HSA-72163;Reactome: R-HSA-6782210 "Protein ubiquitination";"Formation of TC-NER Pre-Incision Complex";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"NoRC negatively regulates rRNA expression";"mRNA Splicing - Major Pathway";"Gap-filling DNA repair synthesis and ligation in TC-NER" maker-scaffold260-size1049682-augustus-gene-5.1-mRNA-1 32 Reactome: R-HSA-72203;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-6796648;Reactome: R-HSA-76042;Reactome: R-HSA-8851708;Reactome: R-HSA-167160;Reactome: R-HSA-167162;Reactome: R-HSA-167290;Reactome: R-HSA-167242;Reactome: R-HSA-167172;Reactome: R-HSA-6807505;Reactome: R-HSA-674695;Reactome: R-HSA-9018519;Reactome: R-HSA-73779;Reactome: R-HSA-167243;Reactome: R-HSA-168325;Reactome: R-HSA-167238;Reactome: R-HSA-112382;Reactome: R-HSA-167246;Reactome: R-HSA-167287;Reactome: R-HSA-72165;Reactome: R-HSA-167152;Reactome: R-HSA-73776;Reactome: R-HSA-75955;Reactome: R-HSA-77075;Reactome: R-HSA-72163;Reactome: R-HSA-167200;Reactome: R-HSA-72086;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-6803529 "Processing of Capped Intron-Containing Pre-mRNA";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II HIV Promoter Escape";"Pausing and recovery of HIV elongation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Transcription of the HIV genome";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events";"Estrogen-dependent gene expression";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Tat-mediated HIV elongation arrest and recovery";"Viral Messenger RNA Synthesis";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of RNA Pol II elongation complex";"Tat-mediated elongation of the HIV-1 transcript";"HIV elongation arrest and recovery";"mRNA Splicing - Minor Pathway";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Elongation";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Splicing - Major Pathway";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"mRNA Capping";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"FGFR2 alternative splicing" maker-scaffold5864-size144364-augustus-gene-0.6-mRNA-1 6 MetaCyc: PWY-7165;MetaCyc: PWY-5530;KEGG: 00930+3.1.1.17;MetaCyc: PWY-2221;KEGG: 00030+3.1.1.17;KEGG: 00053+3.1.1.17 "L-ascorbate biosynthesis VI (engineered pathway)";"Sorbitol biosynthesis II";"Caprolactam degradation";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Pentose phosphate pathway";"Ascorbate and aldarate metabolism" maker-scaffold259-size1622247-augustus-gene-1.2-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold2800-size319359-augustus-gene-0.1-mRNA-1 6 Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72706 "Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold4738-size195656-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" augustus-scaffold107-size1405405-processed-gene-12.0-mRNA-1 14 MetaCyc: PWY-6545;MetaCyc: PWY-7206;KEGG: 00740+3.6.1.9;Reactome: R-HSA-381340;KEGG: 00760+3.6.1.9;KEGG: 00240+3.6.1.9;KEGG: 00770+3.6.1.9;MetaCyc: PWY-7821;MetaCyc: PWY-7187;Reactome: R-HSA-1989781;Reactome: R-HSA-212436;MetaCyc: PWY-7184;KEGG: 00500+3.6.1.9;KEGG: 00230+3.6.1.9 "Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotides dephosphorylation";"Riboflavin metabolism";"Transcriptional regulation of white adipocyte differentiation";"Nicotinate and nicotinamide metabolism";"Pyrimidine metabolism";"Pantothenate and CoA biosynthesis";"Tunicamycin biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"PPARA activates gene expression";"Generic Transcription Pathway";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Starch and sucrose metabolism";"Purine metabolism" maker-scaffold3777-size242356-augustus-gene-0.3-mRNA-1 3 KEGG: 00260+2.1.2.10;KEGG: 00670+2.1.2.10;Reactome: R-HSA-6783984 "Glycine, serine and threonine metabolism";"One carbon pool by folate";"Glycine degradation" maker-scaffold149-size1274473-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-5682910;Reactome: R-HSA-5250971 "LGI-ADAM interactions";"Toxicity of botulinum toxin type C (BoNT/C)" augustus-scaffold252-size1067927-processed-gene-7.0-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold331-size1181569-augustus-gene-10.3-mRNA-1 4 Reactome: R-HSA-6781823;Reactome: R-HSA-8856825;Reactome: R-HSA-8951664;Reactome: R-HSA-5696394 "Formation of TC-NER Pre-Incision Complex";"Cargo recognition for clathrin-mediated endocytosis";"Neddylation";"DNA Damage Recognition in GG-NER" maker-scaffold4192-size217020-augustus-gene-1.8-mRNA-1 24 Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-8852276;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-6811436;Reactome: R-HSA-9609690;Reactome: R-HSA-6807878 "Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"COPI-independent Golgi-to-ER retrograde traffic";"HCMV Early Events";"COPI-mediated anterograde transport" maker-scaffold7817-size84205-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-163765 "ChREBP activates metabolic gene expression" maker-scaffold15303-size20034-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-901032 "ER Quality Control Compartment (ERQC)" maker-scaffold3388-size409158-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-5389840 "Mitochondrial translation elongation" maker-scaffold1298-size526620-augustus-gene-0.1-mRNA-1 4 Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-8856825;Reactome: R-HSA-5696394 "Formation of TC-NER Pre-Incision Complex";"Neddylation";"Cargo recognition for clathrin-mediated endocytosis";"DNA Damage Recognition in GG-NER" maker-scaffold4278-size212865-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-1660661;KEGG: 04070+2.7.11.13 "Sphingolipid de novo biosynthesis";"Phosphatidylinositol signaling system" maker-scaffold1252-size537872-augustus-gene-2.3-mRNA-1 3 KEGG: 00230+2.7.1.20;Reactome: R-HSA-74217;MetaCyc: PWY-6619 "Purine metabolism";"Purine salvage";"Adenine and adenosine salvage VI" maker-scaffold34-size1812401-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-6807505 "RNA polymerase II transcribes snRNA genes" maker-scaffold12133-size27649-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-204005;Reactome: R-HSA-8876198 "COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs" maker-scaffold1837-size432367-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-425561 "Sodium/Calcium exchangers" maker-scaffold361-size949994-augustus-gene-6.3-mRNA-1 3 KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16 "T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation" maker-scaffold398-size1440741-augustus-gene-12.1-mRNA-1 3 Reactome: R-HSA-3000171;Reactome: R-HSA-3000157;Reactome: R-HSA-8874081 "Non-integrin membrane-ECM interactions";"Laminin interactions";"MET activates PTK2 signaling" maker-scaffold856-size652113-augustus-gene-2.1-mRNA-1 2 Reactome: R-HSA-8949215;Reactome: R-HSA-8949664 "Mitochondrial calcium ion transport";"Processing of SMDT1" maker-scaffold1111-size569000-augustus-gene-2.3-mRNA-1 4 Reactome: R-HSA-445095;Reactome: R-HSA-6807878;Reactome: R-HSA-5673001;Reactome: R-HSA-375165 "Interaction between L1 and Ankyrins";"COPI-mediated anterograde transport";"RAF/MAP kinase cascade";"NCAM signaling for neurite out-growth" maker-scaffold1069-size578407-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold908-size631064-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-5173214;Reactome: R-HSA-5083635 "O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)" maker-scaffold2461-size352242-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold935-size623014-augustus-gene-1.5-mRNA-1 3 KEGG: 00600+3.2.1.45;KEGG: 00511+3.2.1.45;Reactome: R-HSA-1660662 "Sphingolipid metabolism";"Other glycan degradation";"Glycosphingolipid metabolism" maker-scaffold3841-size238962-augustus-gene-1.3-mRNA-1 6 KEGG: 00512+2.4.1.122;MetaCyc: PWY-7290;Reactome: R-HSA-913709;MetaCyc: PWY-7433;Reactome: R-HSA-5083632;KEGG: 00514+2.4.1.122 "Mucin type O-glycan biosynthesis";"Escherichia coli serotype O86 O-antigen biosynthesis";"O-linked glycosylation of mucins";"Mucin core 1 and core 2 O-glycosylation";"Defective C1GALT1C1 causes Tn polyagglutination syndrome (TNPS)";"Other types of O-glycan biosynthesis" maker-scaffold5085-size177836-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-163125 "Post-translational modification: synthesis of GPI-anchored proteins" maker-scaffold1414-size505216-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold2386-size357262-augustus-gene-2.11-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold4396-size210357-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-6793080;Reactome: R-HSA-2151201 "rRNA modification in the mitochondrion";"Transcriptional activation of mitochondrial biogenesis" maker-scaffold3696-size246225-augustus-gene-1.6-mRNA-1 2 Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15 "Detoxification of Reactive Oxygen Species";"Glutathione metabolism" maker-scaffold7578-size89061-augustus-gene-0.1-mRNA-1 1 KEGG: 00970+6.1.1.19 "Aminoacyl-tRNA biosynthesis" maker-scaffold10327-size79373-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-382556;Reactome: R-HSA-5678895 "ABC-family proteins mediated transport";"Defective CFTR causes cystic fibrosis" maker-scaffold3379-size272277-augustus-gene-1.7-mRNA-1 6 MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884;Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84 "Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I";"Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis" maker-scaffold2754-size319245-augustus-gene-1.2-mRNA-1 6 Reactome: R-HSA-380994;Reactome: R-HSA-450604;Reactome: R-HSA-6791226;Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-450513 "ATF4 activates genes in response to endoplasmic reticulum stress";"KSRP (KHSRP) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol";"mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA" maker-scaffold25930-size9428-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold77-size1526962-augustus-gene-9.2-mRNA-1 4 Reactome: R-HSA-350054;Reactome: R-HSA-2894862;Reactome: R-HSA-2644606;Reactome: R-HSA-2122947 "Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription" maker-scaffold374-size1250254-augustus-gene-10.5-mRNA-1 10 KEGG: 00520+5.1.3.2;Reactome: R-HSA-70370;MetaCyc: PWY-6317;MetaCyc: PWY-6527;Reactome: R-HSA-5609977;KEGG: 00052+5.1.3.2;MetaCyc: PWY-7344;MetaCyc: PWY-6397;MetaCyc: PWY-7328;MetaCyc: PWY-3821 "Amino sugar and nucleotide sugar metabolism";"Galactose catabolism";"D-galactose degradation I (Leloir pathway)";"Stachyose degradation";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Galactose metabolism";"UDP-alpha-D-galactose biosynthesis";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"D-galactose detoxification" maker-scaffold10698-size55805-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-5658442 "Regulation of RAS by GAPs" maker-scaffold585-size771849-augustus-gene-3.1-mRNA-1 7 Reactome: R-HSA-380284;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-2565942;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-5620912 "Loss of proteins required for interphase microtubule organization from the centrosome";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Regulation of PLK1 Activity at G2/M Transition";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane" maker-scaffold6296-size149161-augustus-gene-0.4-mRNA-1 11 Reactome: R-HSA-170660;Reactome: R-HSA-432040;Reactome: R-HSA-170670;Reactome: R-HSA-163615;Reactome: R-HSA-5610787;Reactome: R-HSA-418594;Reactome: R-HSA-418597;Reactome: R-HSA-164378;KEGG: 00230+4.6.1.1;Reactome: R-HSA-163359;Reactome: R-HSA-418555 "Adenylate cyclase activating pathway";"Vasopressin regulates renal water homeostasis via Aquaporins";"Adenylate cyclase inhibitory pathway";"PKA activation";"Hedgehog 'off' state";"G alpha (i) signalling events";"G alpha (z) signalling events";"PKA activation in glucagon signalling";"Purine metabolism";"Glucagon signaling in metabolic regulation";"G alpha (s) signalling events" maker-scaffold1093-size575541-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-5223345 "Miscellaneous transport and binding events" maker-scaffold2929-size303868-augustus-gene-2.11-mRNA-1 26 Reactome: R-HSA-389960;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-389977;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-8955332;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-2132295;Reactome: R-HSA-5663220;Reactome: R-HSA-983189;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257 "Formation of tubulin folding intermediates by CCT/TriC";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"Post-chaperonin tubulin folding pathway";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Cilium Assembly";"Carboxyterminal post-translational modifications of tubulin";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"MHC class II antigen presentation";"RHO GTPases Activate Formins";"Kinesins";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion" maker-scaffold960-size992493-augustus-gene-8.9-mRNA-1 1 Reactome: R-HSA-83936 "Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane" maker-scaffold2378-size361371-augustus-gene-1.1-mRNA-1 10 KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-4041;MetaCyc: PWY-4061;MetaCyc: PWY-6842;KEGG: 00430+2.3.2.2;KEGG: 00460+2.3.2.2;MetaCyc: PWY-5826;MetaCyc: PWY-8001;MetaCyc: PWY-7112;MetaCyc: PWY-7559 "Glutathione metabolism";"Gamma-glutamyl cycle";"Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II";"Taurine and hypotaurine metabolism";"Cyanoamino acid metabolism";"Hypoglycin biosynthesis";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"4-hydroxy-2-nonenal detoxification";"Glutathione degradation (DUG pathway" maker-scaffold204-size1131059-augustus-gene-10.9-mRNA-1 13 Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706 "L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold301-size1419381-augustus-gene-12.9-mRNA-1 7 Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813 "EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids" maker-scaffold528-size819583-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-1234174 "Cellular response to hypoxia" maker-scaffold2925-size303882-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-69273 "Cyclin A/B1/B2 associated events during G2/M transition" maker-scaffold1072-size591039-augustus-gene-4.12-mRNA-1 6 Reactome: R-HSA-5693616;Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-176187;Reactome: R-HSA-6804756;Reactome: R-HSA-5685938 "Presynaptic phase of homologous DNA pairing and strand exchange";"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Activation of ATR in response to replication stress";"Regulation of TP53 Activity through Phosphorylation";"HDR through Single Strand Annealing (SSA)" maker-scaffold3489-size391432-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-9609523 "Insertion of tail-anchored proteins into the endoplasmic reticulum membrane" maker-scaffold3957-size238393-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-193648;Reactome: R-HSA-416482;Reactome: R-HSA-194840 "NRAGE signals death through JNK";"G alpha (12/13) signalling events";"Rho GTPase cycle" augustus-scaffold4156-size219797-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-430039 "mRNA Splicing - Major Pathway";"mRNA decay by 5' to 3' exoribonuclease" augustus-scaffold1298-size526620-processed-gene-3.0-mRNA-1 1 Reactome: R-HSA-110362 "POLB-Dependent Long Patch Base Excision Repair" maker-scaffold287-size1011457-augustus-gene-9.2-mRNA-1 2 MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4 "Cellulose degradation II (fungi)";"Starch and sucrose metabolism" maker-scaffold499-size1483104-augustus-gene-13.2-mRNA-1 3 MetaCyc: PWY-7159;Reactome: R-HSA-189451;KEGG: 00860+1.3.3.3 "3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism" maker-scaffold6284-size158768-augustus-gene-0.4-mRNA-1 5 MetaCyc: PWY-5532;Reactome: R-HSA-73621;Reactome: R-HSA-73614;KEGG: 00240+2.4.2.3;KEGG: 00983+2.4.2.3 "Nucleoside and nucleotide degradation (archaea)";"Pyrimidine catabolism";"Pyrimidine salvage";"Pyrimidine metabolism";"Drug metabolism - other enzymes" maker-scaffold12128-size24065-augustus-gene-0.2-mRNA-1 4 MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00520+3.2.1.14;MetaCyc: PWY-6855 "Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)" maker-scaffold1301-size527567-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-611105 "Respiratory electron transport" maker-scaffold2080-size711383-augustus-gene-2.6-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold5371-size166126-augustus-gene-0.12-mRNA-1 2 Reactome: R-HSA-168276;Reactome: R-HSA-1169408 "NS1 Mediated Effects on Host Pathways";"ISG15 antiviral mechanism" maker-scaffold9998-size42913-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold17-size2088793-augustus-gene-3.3-mRNA-1 2 Reactome: R-HSA-204005;Reactome: R-HSA-8876198 "COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs" maker-scaffold5346-size164411-augustus-gene-0.1-mRNA-1 14 Reactome: R-HSA-112382;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-167246;Reactome: R-HSA-674695;Reactome: R-HSA-167242;Reactome: R-HSA-167243;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-75955;Reactome: R-HSA-167152;Reactome: R-HSA-167287;Reactome: R-HSA-167290 "Formation of RNA Pol II elongation complex";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Pre-transcription Events";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Tat-mediated HIV elongation arrest and recovery";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II Transcription Elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation" maker-scaffold73-size1549181-augustus-gene-1.3-mRNA-1 4 KEGG: 00230+2.7.4.3;MetaCyc: PWY-7219;Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3 "Purine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism" maker-scaffold10167-size45701-augustus-gene-0.0-mRNA-1 14 MetaCyc: PWY-7725;MetaCyc: PWY-7035;MetaCyc: PWY-8041;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-5972;MetaCyc: PWY-7602;MetaCyc: PWY-7619 "Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis" maker-scaffold933-size623287-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" augustus-scaffold404-size905110-processed-gene-1.1-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold354-size960420-augustus-gene-4.7-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold538-size806317-augustus-gene-6.2-mRNA-1 1 Reactome: R-HSA-6784531 "tRNA processing in the nucleus" augustus-scaffold7201-size98107-processed-gene-0.1-mRNA-1 2 Reactome: R-HSA-427413;Reactome: R-HSA-3214847 "NoRC negatively regulates rRNA expression";"HATs acetylate histones" maker-scaffold159-size1264154-augustus-gene-10.2-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold35-size1795137-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold561-size786733-augustus-gene-6.3-mRNA-1 3 KEGG: 00643+3.7.1.2;Reactome: R-HSA-8963684;KEGG: 00350+3.7.1.2 "Styrene degradation";"Tyrosine catabolism";"Tyrosine metabolism" maker-scaffold744-size697364-augustus-gene-2.1-mRNA-1 5 Reactome: R-HSA-5632684;Reactome: R-HSA-5635838;Reactome: R-HSA-5610787;Reactome: R-HSA-5620922;Reactome: R-HSA-373080 "Hedgehog 'on' state";"Activation of SMO";"Hedgehog 'off' state";"BBSome-mediated cargo-targeting to cilium";"Class B/2 (Secretin family receptors)" maker-scaffold2098-size394917-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-8964038;Reactome: R-HSA-6798695 "LDL clearance";"Neutrophil degranulation" maker-scaffold574-size1811919-augustus-gene-9.6-mRNA-1 1 Reactome: R-HSA-5663220 "RHO GTPases Activate Formins" maker-scaffold178-size1261748-augustus-gene-11.6-mRNA-1 6 Reactome: R-HSA-380994;Reactome: R-HSA-6791226;Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-450513 "ATF4 activates genes in response to endoplasmic reticulum stress";"Major pathway of rRNA processing in the nucleolus and cytosol";"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA" maker-scaffold9591-size48664-augustus-gene-0.3-mRNA-1 13 KEGG: 00980+2.5.1.18;MetaCyc: PWY-4061;MetaCyc: PWY-6842;Reactome: R-HSA-196836;MetaCyc: PWY-6370;MetaCyc: PWY-7533;KEGG: 00983+2.5.1.18;KEGG: 00480+2.5.1.18+1.8.5.1;MetaCyc: PWY-2261;Reactome: R-HSA-156590;KEGG: 00982+2.5.1.18;MetaCyc: PWY-7112;KEGG: 00053+1.8.5.1 "Metabolism of xenobiotics by cytochrome P450";"Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II";"Vitamin C (ascorbate) metabolism";"Ascorbate recycling (cytosolic)";"Gliotoxin biosynthesis";"Drug metabolism - other enzymes";"Glutathione metabolism";"Ascorbate glutathione cycle";"Glutathione conjugation";"Drug metabolism - cytochrome P450";"4-hydroxy-2-nonenal detoxification";"Ascorbate and aldarate metabolism" augustus-scaffold10073-size50662-processed-gene-0.1-mRNA-1 4 KEGG: 00513+2.4.1.257+2.4.1.132;Reactome: R-HSA-446193;Reactome: R-HSA-4549349;KEGG: 00510+2.4.1.257+2.4.1.132 "Various types of N-glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG2 causes ALG2-CDG (CDG-1i)";"N-Glycan biosynthesis" maker-scaffold4771-size188543-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold98-size1429126-augustus-gene-1.2-mRNA-1 33 Reactome: R-HSA-5619107;Reactome: R-HSA-159227;Reactome: R-HSA-191859;Reactome: R-HSA-1169408;Reactome: R-HSA-168271;Reactome: R-HSA-2467813;Reactome: R-HSA-159236;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-68877;Reactome: R-HSA-3232142;Reactome: R-HSA-159231;Reactome: R-HSA-168325;Reactome: R-HSA-5663220;Reactome: R-HSA-3371453;Reactome: R-HSA-3301854;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-9648025;Reactome: R-HSA-168333;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-5578749;Reactome: R-HSA-159230;Reactome: R-HSA-2500257;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-3108214;Reactome: R-HSA-170822 "Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP independent Mature mRNA";"snRNP Assembly";"ISG15 antiviral mechanism";"Transport of Ribonucleoproteins into the Host Nucleus";"Separation of Sister Chromatids";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Mitotic Prometaphase";"SUMOylation of ubiquitinylation proteins";"Transport of Mature mRNA Derived from an Intronless Transcript";"Viral Messenger RNA Synthesis";"RHO GTPases Activate Formins";"Regulation of HSF1-mediated heat shock response";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"HCMV Early Events";"SUMOylation of DNA replication proteins";"EML4 and NUDC in mitotic spindle formation";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"Transcriptional regulation by small RNAs";"Transport of the SLBP Dependant Mature mRNA";"Resolution of Sister Chromatid Cohesion";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein" maker-scaffold4107-size223747-augustus-gene-1.5-mRNA-1 6 Reactome: R-HSA-72702;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72706 "Ribosomal scanning and start codon recognition";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold8056-size79006-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-5624958 "ARL13B-mediated ciliary trafficking of INPP5E" maker-scaffold4719-size192749-augustus-gene-0.4-mRNA-1 18 Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-166208;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-6790901;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339 "Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"mTORC1-mediated signalling";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"rRNA modification in the nucleus and cytosol";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold15303-size20034-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-901032 "ER Quality Control Compartment (ERQC)" maker-scaffold2119-size387529-augustus-gene-2.11-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" maker-scaffold2642-size331122-augustus-gene-1.2-mRNA-1 24 Reactome: R-HSA-9009391;Reactome: R-HSA-400042;Reactome: R-HSA-6814122;Reactome: R-HSA-432040;Reactome: R-HSA-416482;Reactome: R-HSA-418592;Reactome: R-HSA-392451;Reactome: R-HSA-456926;Reactome: R-HSA-8964616;Reactome: R-HSA-420092;Reactome: R-HSA-500657;Reactome: R-HSA-202040;Reactome: R-HSA-418594;Reactome: R-HSA-392170;Reactome: R-HSA-8964315;Reactome: R-HSA-418217;Reactome: R-HSA-416476;Reactome: R-HSA-392851;Reactome: R-HSA-418555;Reactome: R-HSA-381676;Reactome: R-HSA-4086398;Reactome: R-HSA-163359;Reactome: R-HSA-428930;Reactome: R-HSA-418597 "Extra-nuclear estrogen signaling";"Adrenaline,noradrenaline inhibits insulin secretion";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Vasopressin regulates renal water homeostasis via Aquaporins";"G alpha (12/13) signalling events";"ADP signalling through P2Y purinoceptor 1";"G beta:gamma signalling through PI3Kgamma";"Thrombin signalling through proteinase activated receptors (PARs)";"G beta:gamma signalling through CDC42";"Glucagon-type ligand receptors";"Presynaptic function of Kainate receptors";"G-protein activation";"G alpha (i) signalling events";"ADP signalling through P2Y purinoceptor 12";"G beta:gamma signalling through BTK";"G beta:gamma signalling through PLC beta";"G alpha (q) signalling events";"Prostacyclin signalling through prostacyclin receptor";"G alpha (s) signalling events";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Ca2+ pathway";"Glucagon signaling in metabolic regulation";"Thromboxane signalling through TP receptor";"G alpha (z) signalling events" maker-scaffold7651-size126369-augustus-gene-0.3-mRNA-1 26 Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-389960;Reactome: R-HSA-389977;Reactome: R-HSA-9609690;Reactome: R-HSA-6807878;Reactome: R-HSA-6811436;Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483 "Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Gap junction assembly";"Cilium Assembly";"Formation of tubulin folding intermediates by CCT/TriC";"Post-chaperonin tubulin folding pathway";"HCMV Early Events";"COPI-mediated anterograde transport";"COPI-independent Golgi-to-ER retrograde traffic";"Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs" maker-scaffold1617-size464306-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold37-size1810638-augustus-gene-1.1-mRNA-1 3 Reactome: R-HSA-611105;Reactome: R-HSA-6799198;Reactome: R-HSA-1268020 "Respiratory electron transport";"Complex I biogenesis";"Mitochondrial protein import" maker-scaffold57796-size9882-augustus-gene-0.1-mRNA-1 56 Reactome: R-HSA-5689880;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-1169091;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-382556;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-75815;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-211733 "Ub-specific processing proteases";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"Activation of NF-kappaB in B cells";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"ABC-family proteins mediated transport";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"Hedgehog 'on' state";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Ubiquitin-dependent degradation of Cyclin D";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation" maker-scaffold4544-size200926-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-8856828 "Clathrin-mediated endocytosis" maker-scaffold370-size932106-augustus-gene-7.3-mRNA-1 1 Reactome: R-HSA-8963901 "Chylomicron remodeling" maker-scaffold937-size646146-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold1802-size595945-augustus-gene-1.1-mRNA-1 58 Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-382556;Reactome: R-HSA-1169091;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-5689901;Reactome: R-HSA-6798695;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-68827;Reactome: R-HSA-983168 "FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"ABC-family proteins mediated transport";"Activation of NF-kappaB in B cells";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"Metalloprotease DUBs";"Neutrophil degranulation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold671-size725429-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-5628897 "TP53 Regulates Metabolic Genes" maker-scaffold1627-size475124-augustus-gene-2.3-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold3296-size275586-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold3272-size283839-augustus-gene-0.4-mRNA-1 29 Reactome: R-HSA-167160;Reactome: R-HSA-167162;Reactome: R-HSA-5696400;Reactome: R-HSA-5696395;Reactome: R-HSA-73776;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-113418;Reactome: R-HSA-73863;Reactome: R-HSA-167158;Reactome: R-HSA-6796648;Reactome: R-HSA-73772;Reactome: R-HSA-76042;Reactome: R-HSA-112382;Reactome: R-HSA-167246;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-73762;Reactome: R-HSA-6782135;Reactome: R-HSA-73779;Reactome: R-HSA-167172;Reactome: R-HSA-77075;Reactome: R-HSA-6781823;Reactome: R-HSA-427413;Reactome: R-HSA-6781827;Reactome: R-HSA-167200;Reactome: R-HSA-674695;Reactome: R-HSA-72086;Reactome: R-HSA-6782210 "RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II HIV Promoter Escape";"Dual Incision in GG-NER";"Formation of Incision Complex in GG-NER";"RNA Polymerase II Promoter Escape";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Formation of the Early Elongation Complex";"RNA Polymerase I Transcription Termination";"Formation of the HIV-1 Early Elongation Complex";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of RNA Pol II elongation complex";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"RNA Polymerase I Transcription Initiation";"Dual incision in TC-NER";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Transcription of the HIV genome";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of TC-NER Pre-Incision Complex";"NoRC negatively regulates rRNA expression";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Pre-transcription Events";"mRNA Capping";"Gap-filling DNA repair synthesis and ligation in TC-NER" maker-scaffold1750-size446167-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold5503-size172610-augustus-gene-0.5-mRNA-1 3 Reactome: R-HSA-189451;KEGG: 00860+2.5.1.141;MetaCyc: PWY-7856 "Heme biosynthesis";"Porphyrin and chlorophyll metabolism";"Heme a biosynthesis" maker-scaffold5068-size175868-augustus-gene-0.4-mRNA-1 9 Reactome: R-HSA-176187;Reactome: R-HSA-68867;Reactome: R-HSA-68827;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-113507;Reactome: R-HSA-69205;Reactome: R-HSA-68689;Reactome: R-HSA-68616 "Activation of ATR in response to replication stress";"Assembly of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"E2F-enabled inhibition of pre-replication complex formation";"G1/S-Specific Transcription";"CDC6 association with the ORC:origin complex";"Assembly of the ORC complex at the origin of replication" maker-scaffold166-size1230825-augustus-gene-6.6-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold132-size1336397-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold369-size941827-augustus-gene-6.1-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-72165 "mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway" maker-scaffold27-size1854422-augustus-gene-17.2-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" augustus-scaffold149-size1274473-processed-gene-2.1-mRNA-1 4 KEGG: 00970+6.1.1.18;Reactome: R-HSA-379716;Reactome: R-HSA-2408522;Reactome: R-HSA-379726 "Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism";"Mitochondrial tRNA aminoacylation" maker-scaffold12382-size24213-augustus-gene-0.1-mRNA-1 6 Reactome: R-HSA-6791226;Reactome: R-HSA-450604;Reactome: R-HSA-380994;Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-450513 "Major pathway of rRNA processing in the nucleolus and cytosol";"KSRP (KHSRP) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA" maker-scaffold183-size1182426-augustus-gene-8.3-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold162-size1244512-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-1660662 "Glycosphingolipid metabolism" maker-scaffold2443-size354397-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-418594 "G alpha (i) signalling events" maker-scaffold1105-size578071-augustus-gene-4.5-mRNA-1 9 Reactome: R-HSA-76042;Reactome: R-HSA-674695;Reactome: R-HSA-167172;Reactome: R-HSA-6804756;Reactome: R-HSA-73776;Reactome: R-HSA-73779;Reactome: R-HSA-167162;Reactome: R-HSA-75953;Reactome: R-HSA-167161 "RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Pre-transcription Events";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation" maker-scaffold1074-size580161-augustus-gene-4.4-mRNA-1 1 MetaCyc: PWY-7437 "Protein O-[N-acetyl]-glucosylation" maker-scaffold6933-size105311-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-437239 "Recycling pathway of L1" augustus-scaffold4446-size204326-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-70895 "Branched-chain amino acid catabolism" augustus-scaffold29948-size7852-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-2470946 "Cohesin Loading onto Chromatin" maker-scaffold7066-size102223-augustus-gene-0.3-mRNA-1 16 Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-156827 "Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold6907-size108992-augustus-gene-0.2-mRNA-1 4 MetaCyc: PWY-7790;KEGG: 00240+3.5.2.3;MetaCyc: PWY-7791;MetaCyc: PWY-5686 "UMP biosynthesis II";"Pyrimidine metabolism";"UMP biosynthesis III";"UMP biosynthesis I" maker-scaffold63-size1621153-augustus-gene-8.6-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" augustus-scaffold511-size829660-processed-gene-6.0-mRNA-1 3 Reactome: R-HSA-749476;Reactome: R-HSA-76066;Reactome: R-HSA-76061 "RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter" maker-scaffold1440-size500046-augustus-gene-3.5-mRNA-1 3 Reactome: R-HSA-73621;Reactome: R-HSA-196807;Reactome: R-HSA-74259 "Pyrimidine catabolism";"Nicotinate metabolism";"Purine catabolism" maker-scaffold1592-size820705-augustus-gene-7.1-mRNA-1 1 Reactome: R-HSA-1971475 "A tetrasaccharide linker sequence is required for GAG synthesis" augustus-scaffold416-size894259-processed-gene-1.0-mRNA-1 6 Reactome: R-HSA-72695;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72706 "Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold1200-size1161977-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" augustus-scaffold10959-size32242-processed-gene-0.0-mRNA-1 1 KEGG: 00970+6.3.5.7 "Aminoacyl-tRNA biosynthesis" maker-scaffold58-size1632902-augustus-gene-11.4-mRNA-1 12 Reactome: R-HSA-167243;Reactome: R-HSA-167246;Reactome: R-HSA-167200;Reactome: R-HSA-674695;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-112382;Reactome: R-HSA-167290;Reactome: R-HSA-167287;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-6804756 "Tat-mediated HIV elongation arrest and recovery";"Tat-mediated elongation of the HIV-1 transcript";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Pre-transcription Events";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex";"Pausing and recovery of HIV elongation";"HIV elongation arrest and recovery";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Regulation of TP53 Activity through Phosphorylation" maker-scaffold6179-size133441-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold1305-size527328-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-3232118;Reactome: R-HSA-3899300;Reactome: R-HSA-4090294 "SUMOylation of transcription factors";"SUMOylation of transcription cofactors";"SUMOylation of intracellular receptors" maker-scaffold1478-size490584-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-5662702 "Melanin biosynthesis" maker-scaffold3297-size274863-augustus-gene-1.7-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" augustus-scaffold4420-size206516-processed-gene-1.3-mRNA-1 3 Reactome: R-HSA-381426;Reactome: R-HSA-8957275;Reactome: R-HSA-5362798 "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation";"Release of Hh-Np from the secreting cell" maker-scaffold4921-size184217-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold1291-size526777-augustus-gene-1.7-mRNA-1 2 Reactome: R-HSA-6807878;Reactome: R-HSA-6811434 "COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold10659-size34126-augustus-gene-0.1-mRNA-1 4 KEGG: 00908+2.5.1.75;Reactome: R-HSA-6782315;MetaCyc: PWY-2781;Reactome: R-HSA-6787450 "Zeatin biosynthesis";"tRNA modification in the nucleus and cytosol";"Cis-zeatin biosynthesis";"tRNA modification in the mitochondrion" augustus-scaffold2664-size336054-processed-gene-2.2-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold744-size697364-augustus-gene-0.1-mRNA-1 6 Reactome: R-HSA-2151201;Reactome: R-HSA-9615017;Reactome: R-HSA-8950505;Reactome: R-HSA-3299685;MetaCyc: PWY-6854;Reactome: R-HSA-8862803 "Transcriptional activation of mitochondrial biogenesis";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)";"Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models" maker-scaffold155-size1267149-augustus-gene-6.10-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold7552-size90079-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-6811438;Reactome: R-HSA-6811440 "Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network" maker-scaffold2497-size348021-augustus-gene-1.3-mRNA-1 3 Reactome: R-HSA-429947;Reactome: R-HSA-5617472;Reactome: R-HSA-6804115 "Deadenylation of mRNA";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" augustus-scaffold2603-size336605-processed-gene-2.3-mRNA-1 6 Reactome: R-HSA-72163;Reactome: R-HSA-73856;Reactome: R-HSA-72165;Reactome: R-HSA-191859;Reactome: R-HSA-111367;Reactome: R-HSA-77588 "mRNA Splicing - Major Pathway";"RNA Polymerase II Transcription Termination";"mRNA Splicing - Minor Pathway";"snRNP Assembly";"SLBP independent Processing of Histone Pre-mRNAs";"SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs" maker-scaffold366-size939293-augustus-gene-3.1-mRNA-1 13 Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339 "L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold1508-size481187-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-6787450 "tRNA modification in the mitochondrion" maker-scaffold2649-size330791-augustus-gene-2.4-mRNA-1 6 Reactome: R-HSA-196819;MetaCyc: PWY-6908;MetaCyc: PWY-6898;KEGG: 00730+2.7.6.2;MetaCyc: PWY-6907;MetaCyc: PWY-7356 "Vitamin B1 (thiamin) metabolism";"Thiamine diphosphate biosynthesis IV (eukaryotes)";"Thiamine salvage III";"Thiamine metabolism";"Thiamine diphosphate biosynthesis III (Staphylococcus)";"Thiamine salvage IV (yeast)" maker-scaffold761-size684727-augustus-gene-2.3-mRNA-1 7 Reactome: R-HSA-1538133;Reactome: R-HSA-69202;Reactome: R-HSA-156711;Reactome: R-HSA-69205;Reactome: R-HSA-1362277;Reactome: R-HSA-1362300;Reactome: R-HSA-69656 "G0 and Early G1";"Cyclin E associated events during G1/S transition";"Polo-like kinase mediated events";"G1/S-Specific Transcription";"Transcription of E2F targets under negative control by DREAM complex";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"Cyclin A:Cdk2-associated events at S phase entry" augustus-scaffold3700-size246850-processed-gene-1.0-mRNA-1 13 Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-72689 "Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits" maker-scaffold2572-size480542-augustus-gene-3.10-mRNA-1 2 Reactome: R-HSA-204005;Reactome: R-HSA-8876198 "COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs" maker-scaffold2152-size386871-augustus-gene-2.3-mRNA-1 4 KEGG: 00473+5.1.1.1;MetaCyc: PWY-8040;MetaCyc: PWY-7383;MetaCyc: PWY-8072 "D-Alanine metabolism";"Ansatrienin biosynthesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"Alanine racemization" maker-scaffold1749-size454670-augustus-gene-3.8-mRNA-1 6 Reactome: R-HSA-69052;Reactome: R-HSA-68962;Reactome: R-HSA-176974;Reactome: R-HSA-176187;Reactome: R-HSA-68949;Reactome: R-HSA-68867 "Switching of origins to a post-replicative state";"Activation of the pre-replicative complex";"Unwinding of DNA";"Activation of ATR in response to replication stress";"Orc1 removal from chromatin";"Assembly of the pre-replicative complex" maker-scaffold1890-size422951-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-72165 "mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway" maker-scaffold1032-size590852-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold1039-size940658-augustus-gene-4.6-mRNA-1 8 Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-6798695;Reactome: R-HSA-8854518;Reactome: R-HSA-380284;Reactome: R-HSA-2565942;Reactome: R-HSA-380320 "Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Neutrophil degranulation";"AURKA Activation by TPX2";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition";"Recruitment of NuMA to mitotic centrosomes" maker-scaffold1201-size547905-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-445095;Reactome: R-HSA-5576892 "Interaction between L1 and Ankyrins";"Phase 0 - rapid depolarisation" maker-scaffold5505-size158281-augustus-gene-0.9-mRNA-1 6 MetaCyc: PWY-5514;KEGG: 00520+5.4.2.10;MetaCyc: PWY-6906;MetaCyc: PWY-6749;KEGG: 00520+5.4.2.3;Reactome: R-HSA-446210 "UDP-N-acetyl-D-galactosamine biosynthesis II";"Amino sugar and nucleotide sugar metabolism";"Chitin derivatives degradation";"CMP-legionaminate biosynthesis I";"Amino sugar and nucleotide sugar metabolism";"Synthesis of UDP-N-acetyl-glucosamine" maker-scaffold1573-size471180-augustus-gene-3.4-mRNA-1 2 Reactome: R-HSA-191859;Reactome: R-HSA-6807505 "snRNP Assembly";"RNA polymerase II transcribes snRNA genes" maker-scaffold260-size1049682-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-2995383;Reactome: R-HSA-2980766;Reactome: R-HSA-4419969 "Initiation of Nuclear Envelope Reformation";"Nuclear Envelope Breakdown";"Depolymerisation of the Nuclear Lamina" maker-scaffold2128-size390186-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold205-size1125025-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold3167-size283916-augustus-gene-1.10-mRNA-1 2 Reactome: R-HSA-5663213;Reactome: R-HSA-2029482 "RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation" maker-scaffold6937-size105855-augustus-gene-0.1-mRNA-1 10 KEGG: 00670+2.1.2.2;MetaCyc: PWY-6613;KEGG: 00970+2.1.2.9;KEGG: 00670+2.1.2.9;MetaCyc: PWY-6277;KEGG: 00230+2.1.2.2;MetaCyc: PWY-6122;MetaCyc: PWY-6121;KEGG: 00230+6.3.3.1;Reactome: R-HSA-73817 "One carbon pool by folate";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Aminoacyl-tRNA biosynthesis";"One carbon pool by folate";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"Purine metabolism";"5-aminoimidazole ribonucleotide biosynthesis II";"5-aminoimidazole ribonucleotide biosynthesis I";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis" maker-scaffold10-size2473117-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-425410 "Metal ion SLC transporters" augustus-scaffold3020-size296314-processed-gene-1.4-mRNA-1 1 Reactome: R-HSA-901032 "ER Quality Control Compartment (ERQC)" maker-scaffold852-size1508731-augustus-gene-14.5-mRNA-1 2 Reactome: R-HSA-416476;Reactome: R-HSA-388479 "G alpha (q) signalling events";"Vasopressin-like receptors" maker-scaffold2849-size313178-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold2185-size384366-augustus-gene-1.0-mRNA-1 7 KEGG: 04070+3.1.3.25;Reactome: R-HSA-1855183;MetaCyc: PWY-2301;KEGG: 00562+3.1.3.25;MetaCyc: PWY-6363;KEGG: 00521+3.1.3.25;MetaCyc: PWY-4702 "Phosphatidylinositol signaling system";"Synthesis of IP2, IP, and Ins in the cytosol";"Myo-inositol biosynthesis";"Inositol phosphate metabolism";"D-myo-inositol (1,4,5)-trisphosphate degradation";"Streptomycin biosynthesis";"Phytate degradation I" maker-scaffold5214-size169728-augustus-gene-0.9-mRNA-1 3 KEGG: 00970+6.1.1.14;Reactome: R-HSA-379726;Reactome: R-HSA-379716 "Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation";"Cytosolic tRNA aminoacylation" maker-scaffold58-size1632902-augustus-gene-15.8-mRNA-1 24 Reactome: R-HSA-5663220;Reactome: R-HSA-983189;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-2132295;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-8955332;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690 "RHO GTPases Activate Formins";"Kinesins";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Cilium Assembly";"Carboxyterminal post-translational modifications of tubulin";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"HCMV Early Events" maker-scaffold13915-size18628-augustus-gene-0.0-mRNA-1 5 Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-2426168;Reactome: R-HSA-75105 "NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis" maker-scaffold9-size2840252-augustus-gene-4.3-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold1221-size545238-augustus-gene-4.4-mRNA-1 7 KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1 "Thermogenesis";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Human papillomavirus infection" maker-scaffold7762-size85648-augustus-gene-0.5-mRNA-1 1 MetaCyc: PWY-7379 "Mrna capping II" augustus-scaffold24982-size9621-processed-gene-0.1-mRNA-1 6 MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782 "Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis" maker-scaffold3165-size284171-augustus-gene-1.14-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold2934-size303063-augustus-gene-2.6-mRNA-1 1 KEGG: 00970+6.1.1.21 "Aminoacyl-tRNA biosynthesis" maker-scaffold4417-size205782-augustus-gene-1.4-mRNA-1 10 Reactome: R-HSA-167161;Reactome: R-HSA-75953;Reactome: R-HSA-167162;Reactome: R-HSA-73776;Reactome: R-HSA-73779;Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-674695;Reactome: R-HSA-6807505;Reactome: R-HSA-76042 "HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II Pre-transcription Events";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Initiation And Promoter Clearance" augustus-scaffold14065-size17653-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-9033241 "Peroxisomal protein import" maker-scaffold138-size1309700-augustus-gene-7.1-mRNA-1 1 Reactome: R-HSA-418594 "G alpha (i) signalling events" maker-scaffold3399-size268250-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold1500-size481877-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-1169408;Reactome: R-HSA-168276 "ISG15 antiviral mechanism";"NS1 Mediated Effects on Host Pathways" augustus-scaffold1252-size537872-processed-gene-4.1-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" augustus-scaffold2438-size358662-processed-gene-2.2-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold585-size771849-augustus-gene-0.2-mRNA-1 4 MetaCyc: PWY-6987;Reactome: R-HSA-389661;MetaCyc: PWY-7382;KEGG: 00785+2.8.1.8 "Lipoate biosynthesis and incorporation III (Bacillus)";"Glyoxylate metabolism and glycine degradation";"Lipoate biosynthesis and incorporation IV (yeast)";"Lipoic acid metabolism" maker-scaffold793-size674418-augustus-gene-3.0-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" augustus-scaffold12039-size25175-processed-gene-0.1-mRNA-1 10 MetaCyc: PWY-5890;Reactome: R-HSA-2142789;MetaCyc: PWY-7996;MetaCyc: PWY-5895;MetaCyc: PWY-5839;MetaCyc: PWY-5892;MetaCyc: PWY-5844;MetaCyc: PWY-5849;KEGG: 00130+2.1.1.163;MetaCyc: PWY-5891 "Menaquinol-10 biosynthesis";"Ubiquinol biosynthesis";"Menaquinol-4 biosynthesis I";"Menaquinol-13 biosynthesis";"Menaquinol-7 biosynthesis";"Menaquinol-12 biosynthesis";"Menaquinol-9 biosynthesis";"Menaquinol-6 biosynthesis";"Ubiquinone and other terpenoid-quinone biosynthesis";"Menaquinol-11 biosynthesis" maker-scaffold1912-size427002-augustus-gene-3.10-mRNA-1 3 Reactome: R-HSA-480985;KEGG: 00510+2.4.1.117;Reactome: R-HSA-913709 "Synthesis of dolichyl-phosphate-glucose";"N-Glycan biosynthesis";"O-linked glycosylation of mucins" augustus-scaffold4838-size186596-processed-gene-0.6-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold4726-size191738-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold2290-size369435-augustus-gene-2.3-mRNA-1 31 MetaCyc: PWY-8047;MetaCyc: PWY-7746;MetaCyc: PWY-6282;MetaCyc: PWY-5973;MetaCyc: PWY-5142;MetaCyc: PWY-7858;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;MetaCyc: PWY-7663;MetaCyc: PWY-5367;MetaCyc: PWY-5971;MetaCyc: PWY-5966-1;Reactome: R-HSA-75105;MetaCyc: PWY-6113;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWY-5366;Reactome: R-HSA-2426168;MetaCyc: PWYG-321;MetaCyc: PWY-7388;MetaCyc: PWY-6799;MetaCyc: PWY-8049;MetaCyc: PWY-8012;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-7723;MetaCyc: PWY-5989;MetaCyc: PWY-4381;MetaCyc: PWY-5147;Reactome: R-HSA-163765;MetaCyc: PWY-5994;MetaCyc: PWY-7664;MetaCyc: PWY-6519 "Bryostatin biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Cis-vaccenate biosynthesis";"Acyl-[acyl-carrier protein] thioesterase pathway";"(5Z)-dodecenoate biosynthesis II";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Gondoate biosynthesis (anaerobic)";"Petroselinate biosynthesis";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Fatty acyl-CoA biosynthesis";"Superpathway of mycolate biosynthesis";"Fatty acid biosynthesis";"Palmitoleate biosynthesis II (plants and bacteria)";"Activation of gene expression by SREBF (SREBP)";"";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Fatty acid biosynthesis initiation (plant mitochondria)";"Pederin biosynthesis";"Mupirocin biosynthesis";"Biotin metabolism";"Bacterial bioluminescence";"Stearate biosynthesis II (bacteria and plants)";"Fatty acid biosynthesis initiation (bacteria and plants)";"Oleate biosynthesis I (plants)";"ChREBP activates metabolic gene expression";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Oleate biosynthesis IV (anaerobic)";"8-amino-7-oxononanoate biosynthesis I" maker-scaffold2576-size340169-augustus-gene-2.14-mRNA-1 2 MetaCyc: PWY-5041;KEGG: 00270+3.3.1.1 "S-adenosyl-L-methionine cycle II";"Cysteine and methionine metabolism" maker-scaffold821-size665406-augustus-gene-5.5-mRNA-1 4 Reactome: R-HSA-3000157;Reactome: R-HSA-3000171;Reactome: R-HSA-3000178;Reactome: R-HSA-8874081 "Laminin interactions";"Non-integrin membrane-ECM interactions";"ECM proteoglycans";"MET activates PTK2 signaling" maker-scaffold1983-size416296-augustus-gene-2.6-mRNA-1 5 Reactome: R-HSA-72163;Reactome: R-HSA-159231;Reactome: R-HSA-72187;Reactome: R-HSA-77595;Reactome: R-HSA-73856 "mRNA Splicing - Major Pathway";"Transport of Mature mRNA Derived from an Intronless Transcript";"mRNA 3'-end processing";"Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination" maker-scaffold4520-size204570-augustus-gene-1.5-mRNA-1 6 Reactome: R-HSA-381033;Reactome: R-HSA-8963889;Reactome: R-HSA-8957275;Reactome: R-HSA-381426;Reactome: R-HSA-8874211;Reactome: R-HSA-1655829 "ATF6 (ATF6-alpha) activates chaperones";"Assembly of active LPL and LIPC lipase complexes";"Post-translational protein phosphorylation";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"CREB3 factors activate genes";"Regulation of cholesterol biosynthesis by SREBP (SREBF)" maker-scaffold2324-size361830-augustus-gene-2.7-mRNA-1 2 Reactome: R-HSA-5654726;Reactome: R-HSA-190373 "Negative regulation of FGFR1 signaling";"FGFR1c ligand binding and activation" maker-scaffold3773-size240897-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-162791 "Attachment of GPI anchor to uPAR" maker-scaffold380-size934308-augustus-gene-2.1-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold166-size1230825-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-1296052;Reactome: R-HSA-418457 "Ca2+ activated K+ channels";"cGMP effects" maker-scaffold7086-size106780-augustus-gene-0.2-mRNA-1 7 MetaCyc: PWY-7118;MetaCyc: PWY-7854;KEGG: 00630+2.3.3.9;MetaCyc: PWY-7295;MetaCyc: PWY-6969;MetaCyc: PWY-7294;KEGG: 00620+2.3.3.9 "Chitin degradation to ethanol";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Glyoxylate and dicarboxylate metabolism";"L-arabinose degradation IV";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"D-xylose degradation IV";"Pyruvate metabolism" maker-scaffold338-size969700-augustus-gene-4.5-mRNA-1 10 Reactome: R-HSA-156827;Reactome: R-HSA-382556;Reactome: R-HSA-72649;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72731;Reactome: R-HSA-9648895;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-381042 "L13a-mediated translational silencing of Ceruloplasmin expression";"ABC-family proteins mediated transport";"Translation initiation complex formation";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"Recycling of eIF2:GDP";"Response of EIF2AK1 (HRI) to heme deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"PERK regulates gene expression" maker-scaffold4718-size196446-augustus-gene-0.6-mRNA-1 4 Reactome: R-HSA-77387;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-917977 "Insulin receptor recycling";"ROS and RNS production in phagocytes";"Ion channel transport";"Transferrin endocytosis and recycling" maker-scaffold1936-size415324-augustus-gene-3.3-mRNA-1 16 Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-72702;Reactome: R-HSA-156827 "Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold1327-size663912-augustus-gene-2.8-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold665-size828341-augustus-gene-5.3-mRNA-1 4 Reactome: R-HSA-72731;KEGG: 00270+5.3.1.23;MetaCyc: PWY-4361;MetaCyc: PWY-7174 "Recycling of eIF2:GDP";"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II" maker-scaffold2242-size371480-augustus-gene-2.11-mRNA-1 1 Reactome: R-HSA-6805567 "Keratinization" maker-scaffold377-size1240440-augustus-gene-8.1-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" augustus-scaffold20637-size10839-processed-gene-0.0-mRNA-1 3 Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-4420097 "Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"VEGFA-VEGFR2 Pathway" maker-scaffold1263-size531106-augustus-gene-4.6-mRNA-1 1 Reactome: R-HSA-432722 "Golgi Associated Vesicle Biogenesis" maker-scaffold2895-size321242-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-3214841 "PKMTs methylate histone lysines" maker-scaffold6038-size230919-augustus-gene-1.8-mRNA-1 2 MetaCyc: PWY-5697;KEGG: 00230+3.5.3.4 "Allantoin degradation to ureidoglycolate I (urea producing)";"Purine metabolism" maker-scaffold1072-size591039-augustus-gene-4.14-mRNA-1 3 Reactome: R-HSA-500753;KEGG: 00240+1.3.5.2;MetaCyc: PWY-5686 "Pyrimidine biosynthesis";"Pyrimidine metabolism";"UMP biosynthesis I" maker-scaffold4519-size201308-augustus-gene-1.4-mRNA-1 6 Reactome: R-HSA-5693554;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693579;Reactome: R-HSA-5693616;Reactome: R-HSA-912446 "Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Homologous DNA Pairing and Strand Exchange";"Presynaptic phase of homologous DNA pairing and strand exchange";"Meiotic recombination" augustus-scaffold1929-size415288-processed-gene-2.0-mRNA-1 3 Reactome: R-HSA-3214847;Reactome: R-HSA-5696394;Reactome: R-HSA-5689603 "HATs acetylate histones";"DNA Damage Recognition in GG-NER";"UCH proteinases" augustus-scaffold16-size2099125-processed-gene-10.2-mRNA-1 1 Reactome: R-HSA-1296072 "Voltage gated Potassium channels" maker-scaffold818-size662412-augustus-gene-5.11-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" maker-scaffold1749-size454670-augustus-gene-2.2-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" maker-scaffold687-size716990-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-6794361 "Neurexins and neuroligins" maker-scaffold15-size2120621-augustus-gene-6.4-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold5720-size149170-augustus-gene-0.3-mRNA-1 3 KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16 "Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway" maker-scaffold6898-size106977-augustus-gene-0.2-mRNA-1 6 MetaCyc: PWY-5530;MetaCyc: PWY-7165;KEGG: 00930+3.1.1.17;MetaCyc: PWY-2221;KEGG: 00030+3.1.1.17;KEGG: 00053+3.1.1.17 "Sorbitol biosynthesis II";"L-ascorbate biosynthesis VI (engineered pathway)";"Caprolactam degradation";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Pentose phosphate pathway";"Ascorbate and aldarate metabolism" maker-scaffold22240-size17396-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold1781-size696304-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-5689603;Reactome: R-HSA-5696394 "UCH proteinases";"DNA Damage Recognition in GG-NER" maker-scaffold10112-size40927-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-5576886 "Phase 4 - resting membrane potential" maker-scaffold183-size1182426-augustus-gene-5.3-mRNA-1 2 Reactome: R-HSA-6783310;Reactome: R-HSA-6796648 "Fanconi Anemia Pathway";"TP53 Regulates Transcription of DNA Repair Genes" maker-scaffold2158-size385011-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-156581;Reactome: R-HSA-72764 "Methylation";"Eukaryotic Translation Termination" maker-scaffold4481-size207099-augustus-gene-1.6-mRNA-1 6 Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-68877;Reactome: R-HSA-9648025 "RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation" maker-scaffold87-size1468815-augustus-gene-11.4-mRNA-1 1 Reactome: R-HSA-2299718 "Condensation of Prophase Chromosomes" maker-scaffold3672-size416190-augustus-gene-2.0-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold77-size1526962-augustus-gene-2.6-mRNA-1 3 Reactome: R-HSA-381426;Reactome: R-HSA-8957275;Reactome: R-HSA-114608 "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation";"Platelet degranulation" maker-scaffold472-size998402-augustus-gene-5.6-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" maker-scaffold3661-size249620-augustus-gene-1.4-mRNA-1 13 Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957 "Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold170-size1224693-augustus-gene-8.2-mRNA-1 4 Reactome: R-HSA-8951664;Reactome: R-HSA-5696394;Reactome: R-HSA-8856825;Reactome: R-HSA-6781823 "Neddylation";"DNA Damage Recognition in GG-NER";"Cargo recognition for clathrin-mediated endocytosis";"Formation of TC-NER Pre-Incision Complex" maker-scaffold387-size917094-augustus-gene-8.4-mRNA-1 1 Reactome: R-HSA-8955332 "Carboxyterminal post-translational modifications of tubulin" maker-scaffold274-size1027688-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" augustus-scaffold3728-size244748-processed-gene-1.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold2222-size379722-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-446199;Reactome: R-HSA-4755609 "Synthesis of Dolichyl-phosphate";"Defective DHDDS causes retinitis pigmentosa 59" maker-scaffold1103-size571636-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-5687128 "MAPK6/MAPK4 signaling" maker-scaffold243-size1067493-augustus-gene-7.1-mRNA-1 56 Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607761;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-69601;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-1169091;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-382556;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-180534 "MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Dectin-1 mediated noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"Activation of NF-kappaB in B cells";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"ABC-family proteins mediated transport";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4" maker-scaffold864-size644941-augustus-gene-4.3-mRNA-1 5 KEGG: 00900+2.2.1.7;MetaCyc: PWY-7560;MetaCyc: PWY-6891;KEGG: 00730+2.2.1.7;MetaCyc: PWY-6892 "Terpenoid backbone biosynthesis";"Methylerythritol phosphate pathway II";"Thiazole biosynthesis II (aerobic bacteria)";"Thiamine metabolism";"Thiazole biosynthesis I (facultative anaerobic bacteria)" maker-scaffold7025-size193794-augustus-gene-0.7-mRNA-1 13 MetaCyc: PWY-7141;MetaCyc: PWY-7709;MetaCyc: PWY-7659;MetaCyc: PWY-7410;MetaCyc: PWY-7721;MetaCyc: PWY-7736;MetaCyc: PWY-7182;MetaCyc: PWY-7102;KEGG: 00900+2.5.1.10+2.5.1.1;MetaCyc: PWY-6383;MetaCyc: PWY-6859;MetaCyc: PWY-5123;MetaCyc: PWY-5122 "(3S)-linalool biosynthesis";"(3R)-linalool biosynthesis";"Viridicatumtoxin biosynthesis";"Ipsdienol biosynthesis";"Methyl phomopsenoate biosynthesis";"Stellatic acid biosynthesis";"Linalool biosynthesis I";"Bisabolene biosynthesis (engineered)";"Terpenoid backbone biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"All-trans-farnesol biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"Geranyl diphosphate biosynthesis" maker-scaffold3427-size265745-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-6799198 "Respiratory electron transport";"Complex I biogenesis" augustus-scaffold11787-size25925-processed-gene-0.0-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold2477-size350820-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold734-size1099370-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold4478-size203284-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" augustus-scaffold36-size1805755-processed-gene-17.5-mRNA-1 13 Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-2408557 "Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis" augustus-scaffold6038-size230919-processed-gene-1.1-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold940-size620631-augustus-gene-1.1-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" augustus-scaffold5322-size164179-processed-gene-0.7-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold508-size828076-augustus-gene-1.3-mRNA-1 52 Reactome: R-HSA-76061;Reactome: R-HSA-77075;Reactome: R-HSA-73780;Reactome: R-HSA-6781823;Reactome: R-HSA-6781827;Reactome: R-HSA-72163;Reactome: R-HSA-427413;Reactome: R-HSA-167200;Reactome: R-HSA-6782210;Reactome: R-HSA-72086;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-5617472;Reactome: R-HSA-6782135;Reactome: R-HSA-749476;Reactome: R-HSA-6803529;Reactome: R-HSA-167243;Reactome: R-HSA-168325;Reactome: R-HSA-167238;Reactome: R-HSA-73772;Reactome: R-HSA-112382;Reactome: R-HSA-167246;Reactome: R-HSA-203927;Reactome: R-HSA-5601884;Reactome: R-HSA-167287;Reactome: R-HSA-72165;Reactome: R-HSA-5250924;Reactome: R-HSA-167152;Reactome: R-HSA-73776;Reactome: R-HSA-75955;Reactome: R-HSA-167242;Reactome: R-HSA-167172;Reactome: R-HSA-1834949;Reactome: R-HSA-6807505;Reactome: R-HSA-674695;Reactome: R-HSA-9018519;Reactome: R-HSA-73762;Reactome: R-HSA-73779;Reactome: R-HSA-72203;Reactome: R-HSA-73863;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-6796648;Reactome: R-HSA-76042;Reactome: R-HSA-76066;Reactome: R-HSA-76071;Reactome: R-HSA-8851708;Reactome: R-HSA-167160;Reactome: R-HSA-167162;Reactome: R-HSA-167290;Reactome: R-HSA-73980;Reactome: R-HSA-5578749 "RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase III Chain Elongation";"Formation of TC-NER Pre-Incision Complex";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"mRNA Splicing - Major Pathway";"NoRC negatively regulates rRNA expression";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Capping";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Dual incision in TC-NER";"RNA Polymerase III Abortive And Retractive Initiation";"FGFR2 alternative splicing";"Tat-mediated HIV elongation arrest and recovery";"Viral Messenger RNA Synthesis";"Pausing and recovery of Tat-mediated HIV elongation";"RNA Polymerase I Promoter Escape";"Formation of RNA Pol II elongation complex";"Tat-mediated elongation of the HIV-1 transcript";"MicroRNA (miRNA) biogenesis";"PIWI-interacting RNA (piRNA) biogenesis";"HIV elongation arrest and recovery";"mRNA Splicing - Minor Pathway";"B-WICH complex positively regulates rRNA expression";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Elongation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Transcription of the HIV genome";"Cytosolic sensors of pathogen-associated DNA";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events";"Estrogen-dependent gene expression";"RNA Polymerase I Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase I Transcription Termination";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II HIV Promoter Escape";"Pausing and recovery of HIV elongation";"RNA Polymerase III Transcription Termination";"Transcriptional regulation by small RNAs" maker-scaffold808-size662286-augustus-gene-4.4-mRNA-1 8 MetaCyc: PWY-5738;MetaCyc: PWY-7573;MetaCyc: PWY-5739;KEGG: 00051+4.2.1.47;MetaCyc: PWY-5740;KEGG: 00520+4.2.1.47;MetaCyc: PWY-66;Reactome: R-HSA-6787639 "GDP-6-deoxy-D-talose biosynthesis";"GDP-mycosamine biosynthesis";"GDP-D-perosamine biosynthesis";"Fructose and mannose metabolism";"GDP-L-colitose biosynthesis";"Amino sugar and nucleotide sugar metabolism";"GDP-L-fucose biosynthesis I (from GDP-D-mannose)";"GDP-fucose biosynthesis" maker-scaffold7526-size89691-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" augustus-scaffold4554-size200352-processed-gene-1.1-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold4223-size297948-augustus-gene-1.10-mRNA-1 1 Reactome: R-HSA-425561 "Sodium/Calcium exchangers" maker-scaffold2778-size317234-augustus-gene-1.3-mRNA-1 4 KEGG: 00330+1.5.5.2;MetaCyc: PWY-6922;Reactome: R-HSA-70688;MetaCyc: PWY-5737 "Arginine and proline metabolism";"L-Ndelta-acetylornithine biosynthesis";"Proline catabolism";"(5R)-carbapenem carboxylate biosynthesis" maker-scaffold2395-size355334-augustus-gene-2.5-mRNA-1 8 KEGG: 00520+2.7.1.1;KEGG: 00500+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00010+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00052+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00524+2.7.1.1 "Amino sugar and nucleotide sugar metabolism";"Starch and sucrose metabolism";"Glycolysis";"Glycolysis / Gluconeogenesis";"Fructose and mannose metabolism";"Galactose metabolism";"Streptomycin biosynthesis";"Neomycin, kanamycin and gentamicin biosynthesis" maker-scaffold12508-size40379-augustus-gene-0.1-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold1519-size494596-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-912446 "Meiotic recombination" maker-scaffold1399-size886435-augustus-gene-6.5-mRNA-1 2 Reactome: R-HSA-425366;Reactome: R-HSA-1483191 "Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC" augustus-scaffold604-size751320-processed-gene-6.2-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold37-size1810638-augustus-gene-4.2-mRNA-1 14 Reactome: R-HSA-1483166;MetaCyc: PWY-7417;KEGG: 00564+2.3.1.51;MetaCyc: PWY-7782;MetaCyc: PWY-6453;MetaCyc: PWY-7411;MetaCyc: PWY-8051;MetaCyc: PWY-7589;MetaCyc: PWY-7587;MetaCyc: PWY-8053;MetaCyc: PWY-5981;KEGG: 00561+2.3.1.51;MetaCyc: PWY-5667;MetaCyc: PWY-8055 "Synthesis of PA";"Phospholipid remodeling (phosphatidate, yeast)";"Glycerophospholipid metabolism";"Plasmalogen biosynthesis";"Stigma estolide biosynthesis";"Phosphatidate biosynthesis (yeast)";"Anandamide biosynthesis I";"Palmitoleate biosynthesis III (cyanobacteria)";"Oleate biosynthesis III (cyanobacteria)";"Anandamide biosynthesis II";"CDP-diacylglycerol biosynthesis III";"Glycerolipid metabolism";"CDP-diacylglycerol biosynthesis I";"Palmitoyl ethanolamide biosynthesis" maker-scaffold4449-size204091-augustus-gene-1.3-mRNA-1 26 Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-389977;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-389960;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-9619483;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-437239 "EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Post-chaperonin tubulin folding pathway";"COPI-mediated anterograde transport";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"Formation of tubulin folding intermediates by CCT/TriC";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Kinesins";"RHO GTPases Activate Formins";"Activation of AMPK downstream of NMDARs";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1" augustus-scaffold8384-size70697-processed-gene-0.2-mRNA-1 4 KEGG: 00513+2.4.1.257+2.4.1.132;Reactome: R-HSA-446193;Reactome: R-HSA-4549349;KEGG: 00510+2.4.1.257+2.4.1.132 "Various types of N-glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG2 causes ALG2-CDG (CDG-1i)";"N-Glycan biosynthesis" augustus-scaffold910-size624197-processed-gene-4.0-mRNA-1 30 Reactome: R-HSA-73863;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-6796648;Reactome: R-HSA-112382;Reactome: R-HSA-73772;Reactome: R-HSA-76042;Reactome: R-HSA-167246;Reactome: R-HSA-167160;Reactome: R-HSA-167162;Reactome: R-HSA-5696400;Reactome: R-HSA-5696395;Reactome: R-HSA-167152;Reactome: R-HSA-73776;Reactome: R-HSA-75955;Reactome: R-HSA-167172;Reactome: R-HSA-77075;Reactome: R-HSA-6781823;Reactome: R-HSA-6781827;Reactome: R-HSA-427413;Reactome: R-HSA-167200;Reactome: R-HSA-674695;Reactome: R-HSA-6782210;Reactome: R-HSA-72086;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-73762;Reactome: R-HSA-6782135;Reactome: R-HSA-2564830;Reactome: R-HSA-73779 "RNA Polymerase I Transcription Termination";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Tat-mediated elongation of the HIV-1 transcript";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II HIV Promoter Escape";"Dual Incision in GG-NER";"Formation of Incision Complex in GG-NER";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Elongation";"Transcription of the HIV genome";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of TC-NER Pre-Incision Complex";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"NoRC negatively regulates rRNA expression";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Pre-transcription Events";"Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Capping";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"RNA Polymerase I Transcription Initiation";"Dual incision in TC-NER";"Cytosolic iron-sulfur cluster assembly";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening" maker-scaffold256-size1053011-augustus-gene-1.7-mRNA-1 42 Reactome: R-HSA-427413;Reactome: R-HSA-2559586;Reactome: R-HSA-5625886;Reactome: R-HSA-5693607;Reactome: R-HSA-110331;Reactome: R-HSA-5617472;Reactome: R-HSA-110330;Reactome: R-HSA-1912408;Reactome: R-HSA-110329;Reactome: R-HSA-73772;Reactome: R-HSA-5334118;Reactome: R-HSA-427359;Reactome: R-HSA-3214858;Reactome: R-HSA-427389;Reactome: R-HSA-2299718;Reactome: R-HSA-606279;Reactome: R-HSA-5250924;Reactome: R-HSA-5693565;Reactome: R-HSA-73728;Reactome: R-HSA-2559580;Reactome: R-HSA-4551638;Reactome: R-HSA-9609690;Reactome: R-HSA-201722;Reactome: R-HSA-171306;Reactome: R-HSA-212300;Reactome: R-HSA-5693571;Reactome: R-HSA-3214847;Reactome: R-HSA-9616222;Reactome: R-HSA-9018519;Reactome: R-HSA-3214815;Reactome: R-HSA-3214842;Reactome: R-HSA-8936459;Reactome: R-HSA-3214841;Reactome: R-HSA-912446;Reactome: R-HSA-69473;Reactome: R-HSA-8939236;Reactome: R-HSA-1221632;Reactome: R-HSA-977225;Reactome: R-HSA-2559582;Reactome: R-HSA-5578749;Reactome: R-HSA-9610379;Reactome: R-HSA-110328 "NoRC negatively regulates rRNA expression";"DNA Damage/Telomere Stress Induced Senescence";"Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3";"Processing of DNA double-strand break ends";"Cleavage of the damaged purine";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Recognition and association of DNA glycosylase with site containing an affected purine";"Pre-NOTCH Transcription and Translation";"Cleavage of the damaged pyrimidine";"RNA Polymerase I Promoter Escape";"DNA methylation";"SIRT1 negatively regulates rRNA expression";"RMTs methylate histone arginines";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"Condensation of Prophase Chromosomes";"Deposition of new CENPA-containing nucleosomes at the centromere";"B-WICH complex positively regulates rRNA expression";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"RNA Polymerase I Promoter Opening";"Oxidative Stress Induced Senescence";"SUMOylation of chromatin organization proteins";"HCMV Early Events";"Formation of the beta-catenin:TCF transactivating complex";"Packaging Of Telomere Ends";"PRC2 methylates histones and DNA";"Nonhomologous End-Joining (NHEJ)";"HATs acetylate histones";"Transcriptional regulation of granulopoiesis";"Estrogen-dependent gene expression";"HDACs deacetylate histones";"HDMs demethylate histones";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"PKMTs methylate histone lysines";"Meiotic recombination";"G2/M DNA damage checkpoint";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Meiotic synapsis";"Amyloid fiber formation";"Senescence-Associated Secretory Phenotype (SASP)";"Transcriptional regulation by small RNAs";"HCMV Late Events";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine" maker-scaffold972-size605373-augustus-gene-5.3-mRNA-1 34 Reactome: R-HSA-168271;Reactome: R-HSA-159236;Reactome: R-HSA-2467813;Reactome: R-HSA-1169408;Reactome: R-HSA-68877;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-5619107;Reactome: R-HSA-191859;Reactome: R-HSA-159227;Reactome: R-HSA-5663220;Reactome: R-HSA-3371453;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168325;Reactome: R-HSA-4615885;Reactome: R-HSA-9648025;Reactome: R-HSA-168333;Reactome: R-HSA-9639288;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-9609690;Reactome: R-HSA-159230;Reactome: R-HSA-2500257;Reactome: R-HSA-5578749;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-180910;Reactome: R-HSA-4085377;Reactome: R-HSA-141444 "Transport of Ribonucleoproteins into the Host Nucleus";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Separation of Sister Chromatids";"ISG15 antiviral mechanism";"Mitotic Prometaphase";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"snRNP Assembly";"Transport of the SLBP independent Mature mRNA";"RHO GTPases Activate Formins";"Regulation of HSF1-mediated heat shock response";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Viral Messenger RNA Synthesis";"SUMOylation of DNA replication proteins";"EML4 and NUDC in mitotic spindle formation";"NEP/NS2 Interacts with the Cellular Export Machinery";"Amino acids regulate mTORC1";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"HCMV Early Events";"Transport of the SLBP Dependant Mature mRNA";"Resolution of Sister Chromatid Cohesion";"Transcriptional regulation by small RNAs";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Vpr-mediated nuclear import of PICs";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" maker-scaffold1961-size410329-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" augustus-scaffold52-size1685179-processed-gene-12.0-mRNA-1 8 Reactome: R-HSA-428540;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1 "Activation of RAC1";"Human papillomavirus infection";"Relaxin signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"Thermogenesis" maker-scaffold3771-size245104-augustus-gene-1.4-mRNA-1 7 MetaCyc: PWY-8026;Reactome: R-HSA-9022692;KEGG: 00100+1.3.1.70;MetaCyc: PWY-2541;MetaCyc: PWY-6074;MetaCyc: PWY-7154;Reactome: R-HSA-191273 "Sterol biosynthesis (methylotrophs)";"Regulation of MECP2 expression and activity";"Steroid biosynthesis";"Phytosterol biosynthesis (plants)";"Zymosterol biosynthesis";"Ergosterol biosynthesis II";"Cholesterol biosynthesis" maker-scaffold350-size950500-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-380972 "Energy dependent regulation of mTOR by LKB1-AMPK" maker-scaffold3168-size284414-augustus-gene-1.3-mRNA-1 6 Reactome: R-HSA-2426168;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-75105;Reactome: R-HSA-9640463 "Activation of gene expression by SREBF (SREBP)";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Fatty acyl-CoA biosynthesis";"Wax biosynthesis" augustus-scaffold260-size1049682-processed-gene-6.0-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold21595-size19558-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold8569-size67210-augustus-gene-0.2-mRNA-1 27 Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-168271;Reactome: R-HSA-159236;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-159227;Reactome: R-HSA-9609690;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3108214;Reactome: R-HSA-3301854;Reactome: R-HSA-4085377;Reactome: R-HSA-6784531;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-168325 "SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP independent Mature mRNA";"HCMV Early Events";"snRNP Assembly";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"SUMOylation of DNA damage response and repair proteins";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of SUMOylation proteins";"tRNA processing in the nucleus";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"Viral Messenger RNA Synthesis" maker-scaffold4704-size192340-augustus-gene-0.5-mRNA-1 3 KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16 "PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway" maker-scaffold236-size1176356-augustus-gene-0.0-mRNA-1 2 Reactome: R-HSA-8963888;Reactome: R-HSA-8866423 "Chylomicron assembly";"VLDL assembly" maker-scaffold4793-size188136-augustus-gene-0.15-mRNA-1 2 Reactome: R-HSA-6807878;Reactome: R-HSA-6811434 "COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold1945-size493400-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold1139-size564129-augustus-gene-1.3-mRNA-1 13 Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-72689 "Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits" maker-scaffold111-size1895004-augustus-gene-17.6-mRNA-1 1 Reactome: R-HSA-2564830 "Cytosolic iron-sulfur cluster assembly" maker-scaffold472-size998402-augustus-gene-4.4-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold220-size1107649-augustus-gene-10.2-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" augustus-scaffold41120-size17819-processed-gene-0.0-mRNA-1 56 Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-174154;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-75815;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-5607761;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-68827;Reactome: R-HSA-983168 "Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Ubiquitin-dependent degradation of Cyclin D";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold3165-size284171-augustus-gene-1.13-mRNA-1 5 Reactome: R-HSA-6798695;Reactome: R-HSA-2132295;Reactome: R-HSA-2022090;Reactome: R-HSA-1442490;Reactome: R-HSA-1679131 "Neutrophil degranulation";"MHC class II antigen presentation";"Assembly of collagen fibrils and other multimeric structures";"Collagen degradation";"Trafficking and processing of endosomal TLR" maker-scaffold8460-size69818-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-2470946 "Cohesin Loading onto Chromatin" maker-scaffold5098-size174628-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-2514859;KEGG: 00900+2.5.1.58 "Inactivation, recovery and regulation of the phototransduction cascade";"Terpenoid backbone biosynthesis" augustus-scaffold614-size755922-processed-gene-5.0-mRNA-1 1 Reactome: R-HSA-1474228 "Degradation of the extracellular matrix" maker-scaffold2042-size399327-augustus-gene-2.3-mRNA-1 7 Reactome: R-HSA-380270;Reactome: R-HSA-2565942;Reactome: R-HSA-380320;Reactome: R-HSA-5620912;Reactome: R-HSA-380259;Reactome: R-HSA-380284;Reactome: R-HSA-8854518 "Recruitment of mitotic centrosome proteins and complexes";"Regulation of PLK1 Activity at G2/M Transition";"Recruitment of NuMA to mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Loss of Nlp from mitotic centrosomes";"Loss of proteins required for interphase microtubule organization from the centrosome";"AURKA Activation by TPX2" maker-scaffold42327-size4831-augustus-gene-0.1-mRNA-1 6 Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-450513;Reactome: R-HSA-6791226;Reactome: R-HSA-450604;Reactome: R-HSA-380994 "mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol";"KSRP (KHSRP) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress" maker-scaffold4232-size216438-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-418594 "G alpha (i) signalling events" augustus-scaffold1692-size453065-processed-gene-1.1-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold380-size934308-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-72165 "mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway" maker-scaffold1781-size696304-augustus-gene-5.8-mRNA-1 4 Reactome: R-HSA-72163;Reactome: R-HSA-159236;Reactome: R-HSA-72187;Reactome: R-HSA-73856 "mRNA Splicing - Major Pathway";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination" maker-scaffold10268-size43411-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-5083635;Reactome: R-HSA-5173214 "Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins" maker-scaffold155-size1267149-augustus-gene-6.15-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold2325-size364954-augustus-gene-2.8-mRNA-1 3 Reactome: R-HSA-70350;KEGG: 00051+2.7.1.3;Reactome: R-HSA-5657562 "Fructose catabolism";"Fructose and mannose metabolism";"Essential fructosuria" maker-scaffold1450-size512895-augustus-gene-4.5-mRNA-1 16 Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764 "Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination" maker-scaffold8975-size60266-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" augustus-scaffold10055-size41445-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-9609523 "Insertion of tail-anchored proteins into the endoplasmic reticulum membrane" maker-scaffold629-size878374-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-70221 "Glycogen breakdown (glycogenolysis)" maker-scaffold3710-size246941-augustus-gene-1.6-mRNA-1 1 KEGG: 00760+2.3.1.286 "Nicotinate and nicotinamide metabolism" maker-scaffold166-size1230825-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold274-size1027688-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-379716;KEGG: 00970+6.1.1.7 "Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis" maker-scaffold2728-size322941-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-6794361 "Neurexins and neuroligins" maker-scaffold909-size631154-augustus-gene-2.1-mRNA-1 7 KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1 "PI3K-Akt signaling pathway";"Thermogenesis";"Relaxin signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Human papillomavirus infection" maker-scaffold7306-size96039-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold1966-size413091-augustus-gene-3.6-mRNA-1 5 Reactome: R-HSA-174490;Reactome: R-HSA-162588;Reactome: R-HSA-9615710;Reactome: R-HSA-9610379;Reactome: R-HSA-917729 "Membrane binding and targetting of GAG proteins";"Budding and maturation of HIV virion";"Late endosomal microautophagy";"HCMV Late Events";"Endosomal Sorting Complex Required For Transport (ESCRT)" maker-scaffold2106-size398721-augustus-gene-2.3-mRNA-1 12 MetaCyc: PWY-5132;MetaCyc: PWY-5108;MetaCyc: PWY-6672;MetaCyc: PWY-5133;KEGG: 00680+6.2.1.1;MetaCyc: PWY-7118;MetaCyc: PWY-7857;KEGG: 00720+6.2.1.1;KEGG: 00630+6.2.1.1;KEGG: 00010+6.2.1.1;KEGG: 00620+6.2.1.1;KEGG: 00640+6.2.1.1 "Lupulone and humulone biosynthesis";"L-isoleucine biosynthesis V";"Cis-genanyl-coa degradation";"Colupulone and cohumulone biosynthesis";"Methane metabolism";"Chitin degradation to ethanol";"Adlupulone and adhumulone biosynthesis";"Carbon fixation pathways in prokaryotes";"Glyoxylate and dicarboxylate metabolism";"Glycolysis / Gluconeogenesis";"Pyruvate metabolism";"Propanoate metabolism" maker-scaffold350-size950500-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-2151201;KEGG: 00760+2.3.1.286 "Transcriptional activation of mitochondrial biogenesis";"Nicotinate and nicotinamide metabolism" maker-scaffold3364-size405364-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-9022692 "Regulation of MECP2 expression and activity" maker-scaffold1255-size537261-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-3000178 "ECM proteoglycans" maker-scaffold4714-size375393-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold5586-size153387-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold192-size1152597-augustus-gene-7.3-mRNA-1 2 Reactome: R-HSA-203927;Reactome: R-HSA-8986944 "MicroRNA (miRNA) biogenesis";"Transcriptional Regulation by MECP2" maker-scaffold1503-size492733-augustus-gene-1.1-mRNA-1 3 Reactome: R-HSA-381340;Reactome: R-HSA-9018519;Reactome: R-HSA-1989781 "Transcriptional regulation of white adipocyte differentiation";"Estrogen-dependent gene expression";"PPARA activates gene expression" maker-scaffold20-size2005619-augustus-gene-18.2-mRNA-1 5 Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-77387;Reactome: R-HSA-917977 "Ion channel transport";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Insulin receptor recycling";"Transferrin endocytosis and recycling" maker-scaffold2550-size341545-augustus-gene-2.10-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold1735-size447908-augustus-gene-3.9-mRNA-1 2 KEGG: 00511+3.2.1.96;Reactome: R-HSA-532668 "Other glycan degradation";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle" maker-scaffold1975-size408740-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-500753 "Pyrimidine biosynthesis" maker-scaffold204-size1131059-augustus-gene-10.7-mRNA-1 8 KEGG: 05165+2.7.11.1;KEGG: 04660+2.7.10.2;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1 "Human papillomavirus infection";"T cell receptor signaling pathway";"Relaxin signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"Thermogenesis" maker-scaffold101-size1524132-augustus-gene-1.1-mRNA-1 6 MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" maker-scaffold3297-size274863-augustus-gene-1.5-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold4251-size213796-augustus-gene-1.4-mRNA-1 4 Reactome: R-HSA-8856825;Reactome: R-HSA-8951664;Reactome: R-HSA-5696394;Reactome: R-HSA-6781823 "Cargo recognition for clathrin-mediated endocytosis";"Neddylation";"DNA Damage Recognition in GG-NER";"Formation of TC-NER Pre-Incision Complex" maker-scaffold891-size655374-augustus-gene-5.5-mRNA-1 1 Reactome: R-HSA-6807505 "RNA polymerase II transcribes snRNA genes" maker-scaffold417-size891229-augustus-gene-6.2-mRNA-1 24 Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467 "HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Gap junction assembly";"Cilium Assembly";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs" maker-scaffold123-size1361013-augustus-gene-8.5-mRNA-1 2 Reactome: R-HSA-373080;Reactome: R-HSA-3238698 "Class B/2 (Secretin family receptors)";"WNT ligand biogenesis and trafficking" maker-scaffold1265-size577516-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" maker-scaffold170-size1224693-augustus-gene-5.3-mRNA-1 2 MetaCyc: PWY-6981;KEGG: 00520+2.4.1.16 "Chitin biosynthesis";"Amino sugar and nucleotide sugar metabolism" maker-scaffold5011-size177557-augustus-gene-0.3-mRNA-1 4 MetaCyc: PWY-7174;MetaCyc: PWY-4361;KEGG: 00270+5.3.1.23;Reactome: R-HSA-1237112 "S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism";"Methionine salvage pathway" augustus-scaffold8533-size73980-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-9033500;Reactome: R-HSA-9033241 "TYSND1 cleaves peroxisomal proteins";"Peroxisomal protein import" maker-scaffold4014-size312056-augustus-gene-2.6-mRNA-1 11 MetaCyc: PWY-7586;KEGG: 00520+5.3.1.8;Reactome: R-HSA-4043916;MetaCyc: PWY-6992;MetaCyc: PWY-7456;MetaCyc: PWY-3861;KEGG: 00051+5.3.1.8;MetaCyc: PWY-882;MetaCyc: PWY-5659;Reactome: R-HSA-446205;MetaCyc: PWY-3881 "Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation";"Amino sugar and nucleotide sugar metabolism";"Defective MPI causes MPI-CDG (CDG-1b)";"1,5-anhydrofructose degradation";"Beta-(1,4)-mannan degradation";"Mannitol degradation II";"Fructose and mannose metabolism";"L-ascorbate biosynthesis I (L-galactose pathway)";"GDP-mannose biosynthesis";"Synthesis of GDP-mannose";"Mannitol biosynthesis" maker-scaffold4899-size183035-augustus-gene-0.6-mRNA-1 13 Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-6791226;Reactome: R-HSA-975957 "Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold438-size875215-augustus-gene-2.4-mRNA-1 6 Reactome: R-HSA-139915;Reactome: R-HSA-6803205;Reactome: R-HSA-6804759;Reactome: R-HSA-6803211;Reactome: R-HSA-6803207;Reactome: R-HSA-6803204 "Activation of PUMA and translocation to mitochondria";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain";"Regulation of TP53 Activity through Association with Co-factors";"TP53 Regulates Transcription of Death Receptors and Ligands";"TP53 Regulates Transcription of Caspase Activators and Caspases";"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release" maker-scaffold155-size1267149-augustus-gene-6.14-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold529-size813989-augustus-gene-7.2-mRNA-1 5 Reactome: R-HSA-977225;Reactome: R-HSA-5689877;Reactome: R-HSA-9646399;Reactome: R-HSA-5205685;Reactome: R-HSA-983168 "Amyloid fiber formation";"Josephin domain DUBs";"Aggrephagy";"Pink/Parkin Mediated Mitophagy";"Antigen processing: Ubiquitination & Proteasome degradation" augustus-scaffold12129-size36421-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold1127-size710437-augustus-gene-2.3-mRNA-1 6 Reactome: R-HSA-3000171;Reactome: R-HSA-8948216;Reactome: R-HSA-1442490;Reactome: R-HSA-1650814;Reactome: R-HSA-2022090;Reactome: R-HSA-8874081 "Non-integrin membrane-ECM interactions";"Collagen chain trimerization";"Collagen degradation";"Collagen biosynthesis and modifying enzymes";"Assembly of collagen fibrils and other multimeric structures";"MET activates PTK2 signaling" maker-scaffold77-size1526962-augustus-gene-14.4-mRNA-1 2 Reactome: R-HSA-416476;Reactome: R-HSA-388479 "G alpha (q) signalling events";"Vasopressin-like receptors" maker-scaffold3778-size240910-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-6811438;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440 "Intra-Golgi traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network" maker-scaffold2347-size359201-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" augustus-scaffold3353-size303961-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold50-size1837101-augustus-gene-14.2-mRNA-1 1 KEGG: 00030+1.1.1.47 "Pentose phosphate pathway" maker-scaffold846-size651511-augustus-gene-5.9-mRNA-1 4 MetaCyc: PWY-6855;KEGG: 00520+3.2.1.14;MetaCyc: PWY-7822;MetaCyc: PWY-6902 "Chitin degradation I (archaea)";"Amino sugar and nucleotide sugar metabolism";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)" maker-scaffold7049-size102476-augustus-gene-0.2-mRNA-1 6 Reactome: R-HSA-68949;Reactome: R-HSA-68867;Reactome: R-HSA-176974;Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68962 "Orc1 removal from chromatin";"Assembly of the pre-replicative complex";"Unwinding of DNA";"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Activation of the pre-replicative complex" maker-scaffold8495-size68624-augustus-gene-0.1-mRNA-1 6 KEGG: 00680+5.4.2.11;MetaCyc: PWY-5484;MetaCyc: PWY-8004;MetaCyc: PWY-1622;KEGG: 00010+5.4.2.11;KEGG: 00260+5.4.2.11 "Methane metabolism";"Glycolysis II (from fructose 6-phosphate)";"Entner-Doudoroff pathway I";"Formaldehyde assimilation I (serine pathway)";"Glycolysis / Gluconeogenesis";"Glycine, serine and threonine metabolism" augustus-scaffold2224-size375543-processed-gene-1.0-mRNA-1 1 Reactome: R-HSA-6804760 "Regulation of TP53 Activity through Methylation" maker-scaffold3436-size263631-augustus-gene-1.6-mRNA-1 4 Reactome: R-HSA-350054;Reactome: R-HSA-2894862;Reactome: R-HSA-2644606;Reactome: R-HSA-2122947 "Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription" maker-scaffold256-size1053011-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" maker-scaffold159-size1264154-augustus-gene-5.5-mRNA-1 2 Reactome: R-HSA-70921;KEGG: 00340+2.1.1.22 "Histidine catabolism";"Histidine metabolism" maker-scaffold8216-size76298-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold170-size1224693-augustus-gene-5.5-mRNA-1 2 KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981 "Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis" maker-scaffold5259-size166161-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-6799198 "Respiratory electron transport";"Complex I biogenesis" maker-scaffold3069-size293175-augustus-gene-1.9-mRNA-1 57 Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-1236974;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-5632684;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-5689880;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-6798695;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-4641257;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-1236978 "Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"ER-Phagosome pathway";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Hedgehog 'on' state";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Ub-specific processing proteases";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Neutrophil degranulation";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Degradation of AXIN";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Cross-presentation of soluble exogenous antigens (endosomes)" maker-scaffold2764-size320738-augustus-gene-2.2-mRNA-1 56 Reactome: R-HSA-75815;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-4608870;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-1169091;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978 "Ubiquitin-dependent degradation of Cyclin D";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Asymmetric localization of PCP proteins";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Activation of NF-kappaB in B cells";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)" maker-scaffold3489-size391432-augustus-gene-2.2-mRNA-1 2 Reactome: R-HSA-5083635;Reactome: R-HSA-5173214 "Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins" maker-scaffold906-size632830-augustus-gene-1.5-mRNA-1 2 Reactome: R-HSA-162710;KEGG: 00563+2.4.1.198 "Synthesis of glycosylphosphatidylinositol (GPI)";"Glycosylphosphatidylinositol (GPI)-anchor biosynthesis" maker-scaffold133-size1635514-augustus-gene-2.7-mRNA-1 56 Reactome: R-HSA-1236974;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-8948751;Reactome: R-HSA-174154;Reactome: R-HSA-174113;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-1169091;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5689603;Reactome: R-HSA-4641257;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-1236978;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-69601 "ER-Phagosome pathway";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"Regulation of PTEN stability and activity";"APC/C:Cdc20 mediated degradation of Securin";"SCF-beta-TrCP mediated degradation of Emi1";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"Activation of NF-kappaB in B cells";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"UCH proteinases";"Degradation of AXIN";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A" maker-scaffold8095-size78179-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-6807505;Reactome: R-HSA-72163 "RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway" maker-scaffold1453-size499979-augustus-gene-3.3-mRNA-1 31 MetaCyc: PWY-6282;MetaCyc: PWY-5973;MetaCyc: PWY-7858;MetaCyc: PWY-5142;MetaCyc: PWY-8047;MetaCyc: PWY-7746;Reactome: R-HSA-9029558;Reactome: R-HSA-199220;MetaCyc: PWY-5367;MetaCyc: PWY-7663;MetaCyc: PWY-5366;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;Reactome: R-HSA-2426168;Reactome: R-HSA-75105;MetaCyc: PWY-6113;MetaCyc: PWY-5966-1;MetaCyc: PWY-5971;Reactome: R-HSA-163765;MetaCyc: PWY-5147;MetaCyc: PWY-4381;MetaCyc: PWY-6519;MetaCyc: PWY-7664;MetaCyc: PWY-5994;MetaCyc: PWY-6799;MetaCyc: PWY-7388;MetaCyc: PWY-8012;MetaCyc: PWYG-321;MetaCyc: PWY-8049;MetaCyc: PWY-7723;MetaCyc: PWY-5989;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41 "Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Cis-vaccenate biosynthesis";"(5Z)-dodecenoate biosynthesis II";"Acyl-[acyl-carrier protein] thioesterase pathway";"Bryostatin biosynthesis";"Mycobacterial sulfolipid biosynthesis";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Vitamin B5 (pantothenate) metabolism";"Petroselinate biosynthesis";"Gondoate biosynthesis (anaerobic)";"Palmitoleate biosynthesis II (plants and bacteria)";"Fatty acid biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis";"Superpathway of mycolate biosynthesis";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"ChREBP activates metabolic gene expression";"Oleate biosynthesis I (plants)";"Fatty acid biosynthesis initiation (bacteria and plants)";"8-amino-7-oxononanoate biosynthesis I";"Oleate biosynthesis IV (anaerobic)";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Fatty acid biosynthesis initiation (plant mitochondria)";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Mupirocin biosynthesis";"";"Pederin biosynthesis";"Bacterial bioluminescence";"Stearate biosynthesis II (bacteria and plants)";"Biotin metabolism" maker-scaffold2849-size313178-augustus-gene-1.4-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" maker-scaffold1324-size935454-augustus-gene-8.4-mRNA-1 1 Reactome: R-HSA-5632928 "Defective Mismatch Repair Associated With MSH2" augustus-scaffold2586-size338140-processed-gene-2.0-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold7751-size84215-augustus-gene-0.3-mRNA-1 1 KEGG: 00480+3.4.11.1 "Glutathione metabolism" maker-scaffold1635-size460280-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-8856828;Reactome: R-HSA-6811440;Reactome: R-HSA-8856825 "Clathrin-mediated endocytosis";"Retrograde transport at the Trans-Golgi-Network";"Cargo recognition for clathrin-mediated endocytosis" maker-scaffold2920-size562000-augustus-gene-4.7-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-8869496 "rRNA modification in the nucleus and cytosol";"TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation" maker-scaffold2381-size358016-augustus-gene-2.9-mRNA-1 7 Reactome: R-HSA-380284;Reactome: R-HSA-8854518;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-380270;Reactome: R-HSA-2565942 "Loss of proteins required for interphase microtubule organization from the centrosome";"AURKA Activation by TPX2";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Recruitment of mitotic centrosome proteins and complexes";"Regulation of PLK1 Activity at G2/M Transition" maker-scaffold2393-size356644-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-3238698;Reactome: R-HSA-373080 "WNT ligand biogenesis and trafficking";"Class B/2 (Secretin family receptors)" maker-scaffold1697-size454428-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold10219-size39326-augustus-gene-0.1-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" maker-scaffold14299-size23128-augustus-gene-0.1-mRNA-1 56 Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-69601;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-1169091;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050 "Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"Activation of NF-kappaB in B cells";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" maker-scaffold1692-size453065-augustus-gene-3.8-mRNA-1 10 MetaCyc: PWY-7559;MetaCyc: PWY-7112;MetaCyc: PWY-8001;KEGG: 00460+2.3.2.2;MetaCyc: PWY-5826;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-4041;KEGG: 00430+2.3.2.2;MetaCyc: PWY-4061;MetaCyc: PWY-6842 "Glutathione degradation (DUG pathway";"4-hydroxy-2-nonenal detoxification";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Cyanoamino acid metabolism";"Hypoglycin biosynthesis";"Glutathione metabolism";"Gamma-glutamyl cycle";"Taurine and hypotaurine metabolism";"Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II" maker-scaffold97-size1441455-augustus-gene-11.5-mRNA-1 18 KEGG: 00360+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00401+2.6.1.1;KEGG: 00270+2.6.1.1;MetaCyc: PWY-6638;MetaCyc: PWY-7115;KEGG: 00330+2.6.1.1;MetaCyc: PWY-7383;MetaCyc: PWY-6642;MetaCyc: PWY-6643;KEGG: 00400+2.6.1.1;KEGG: 00960+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00950+2.6.1.1;KEGG: 00220+2.6.1.1;MetaCyc: PWY-7117;KEGG: 00250+2.6.1.1;KEGG: 00710+2.6.1.1 "Phenylalanine metabolism";"Tyrosine metabolism";"Novobiocin biosynthesis";"Cysteine and methionine metabolism";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Arginine and proline metabolism";"Anaerobic energy metabolism (invertebrates, cytosol)";"(R)-cysteate degradation";"Coenzyme M biosynthesis II";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Tropane, piperidine and pyridine alkaloid biosynthesis";"Partial TCA cycle (obligate autotrophs)";"Isoquinoline alkaloid biosynthesis";"Arginine biosynthesis";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Alanine, aspartate and glutamate metabolism";"Carbon fixation in photosynthetic organisms" maker-scaffold2378-size361371-augustus-gene-2.8-mRNA-1 10 MetaCyc: PWY-8001;MetaCyc: PWY-7112;MetaCyc: PWY-7559;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-4041;MetaCyc: PWY-6842;MetaCyc: PWY-4061;KEGG: 00430+2.3.2.2;KEGG: 00460+2.3.2.2;MetaCyc: PWY-5826 "Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"4-hydroxy-2-nonenal detoxification";"Glutathione degradation (DUG pathway";"Glutathione metabolism";"Gamma-glutamyl cycle";"Glutathione-mediated detoxification II";"Glutathione-mediated detoxification I";"Taurine and hypotaurine metabolism";"Cyanoamino acid metabolism";"Hypoglycin biosynthesis" maker-scaffold1476-size490429-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-162710 "Synthesis of glycosylphosphatidylinositol (GPI)" maker-scaffold2868-size312599-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-6785631 "ERBB2 Regulates Cell Motility" maker-scaffold2374-size359636-augustus-gene-1.3-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-72649;Reactome: R-HSA-156827 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold567-size783925-augustus-gene-1.1-mRNA-1 18 Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-167290;Reactome: R-HSA-167160;Reactome: R-HSA-167287;Reactome: R-HSA-167246;Reactome: R-HSA-6796648;Reactome: R-HSA-167238;Reactome: R-HSA-112382;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167243;Reactome: R-HSA-674695;Reactome: R-HSA-167200;Reactome: R-HSA-72086;Reactome: R-HSA-6807505;Reactome: R-HSA-77075;Reactome: R-HSA-167242 "Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Pausing and recovery of HIV elongation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV elongation arrest and recovery";"Tat-mediated elongation of the HIV-1 transcript";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of RNA Pol II elongation complex";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated HIV elongation arrest and recovery";"RNA Polymerase II Pre-transcription Events";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"mRNA Capping";"RNA polymerase II transcribes snRNA genes";"RNA Pol II CTD phosphorylation and interaction with CE";"Abortive elongation of HIV-1 transcript in the absence of Tat" augustus-scaffold5460-size248481-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-6799198 "Respiratory electron transport";"Complex I biogenesis" augustus-scaffold2572-size480542-processed-gene-3.3-mRNA-1 13 Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-2408557 "Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis" maker-scaffold1315-size524712-augustus-gene-4.3-mRNA-1 11 Reactome: R-HSA-2565942;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-380320;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-8854518;Reactome: R-HSA-380284 "Regulation of PLK1 Activity at G2/M Transition";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recruitment of NuMA to mitotic centrosomes";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"AURKA Activation by TPX2";"Loss of proteins required for interphase microtubule organization from the centrosome" augustus-scaffold1425-size501538-processed-gene-4.2-mRNA-1 2 KEGG: 00970+6.1.1.20;Reactome: R-HSA-379716 "Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation" augustus-scaffold1470-size491768-processed-gene-2.1-mRNA-1 27 Reactome: R-HSA-4085377;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-180910;Reactome: R-HSA-168325;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-159227;Reactome: R-HSA-9609690;Reactome: R-HSA-191859;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-168271;Reactome: R-HSA-159236;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-3232142;Reactome: R-HSA-168333 "SUMOylation of SUMOylation proteins";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Vpr-mediated nuclear import of PICs";"Viral Messenger RNA Synthesis";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP independent Mature mRNA";"HCMV Early Events";"snRNP Assembly";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery" maker-scaffold112-size1389673-augustus-gene-8.4-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold935-size623014-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-400253 "Circadian Clock" maker-scaffold2273-size380119-augustus-gene-2.4-mRNA-1 5 Reactome: R-HSA-5578775;Reactome: R-HSA-2470946;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-2468052 "Ion homeostasis";"Cohesin Loading onto Chromatin";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"Establishment of Sister Chromatid Cohesion" maker-scaffold2327-size366307-augustus-gene-2.9-mRNA-1 1 Reactome: R-HSA-3214841 "PKMTs methylate histone lysines" maker-scaffold13-size2141512-augustus-gene-14.1-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold3448-size295922-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold983-size606302-augustus-gene-2.10-mRNA-1 3 Reactome: R-HSA-4724325;KEGG: 00510+2.4.1.265;Reactome: R-HSA-446193 "Defective ALG8 causes ALG8-CDG (CDG-1h)";"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" maker-scaffold7570-size163776-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-73621;Reactome: R-HSA-73614 "Pyrimidine catabolism";"Pyrimidine salvage" maker-scaffold1797-size437762-augustus-gene-3.8-mRNA-1 2 MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4 "Cellulose degradation II (fungi)";"Starch and sucrose metabolism" maker-scaffold684-size716621-augustus-gene-4.5-mRNA-1 3 Reactome: R-HSA-2024096;Reactome: R-HSA-2206302;Reactome: R-HSA-2024101 "HS-GAG degradation";"MPS I - Hurler syndrome";"CS/DS degradation" maker-scaffold5631-size153369-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold2676-size328722-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold2502-size349564-augustus-gene-2.5-mRNA-1 14 KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-8041;MetaCyc: PWY-7725;MetaCyc: PWY-7035;Reactome: R-HSA-75876;MetaCyc: PWY-7036;MetaCyc: PWY-5972;MetaCyc: PWY-7601;MetaCyc: PWY-5080;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-7619;MetaCyc: PWY-7602 "Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis II";"Stearate biosynthesis I (animals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Juniperonate biosynthesis";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)" maker-scaffold6052-size136360-augustus-gene-0.2-mRNA-1 56 Reactome: R-HSA-1169091;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-75815;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-1236978;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-4641257;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5689603;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-211733;Reactome: R-HSA-5678895 "Activation of NF-kappaB in B cells";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Ubiquitin-dependent degradation of Cyclin D";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of AXIN";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"UCH proteinases";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis" maker-scaffold337-size964764-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold3315-size273756-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold367-size939931-augustus-gene-8.4-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold8759-size64158-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-975957 "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold4417-size205782-augustus-gene-1.3-mRNA-1 10 Reactome: R-HSA-6804756;Reactome: R-HSA-73776;Reactome: R-HSA-73779;Reactome: R-HSA-167162;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-76042;Reactome: R-HSA-6807505;Reactome: R-HSA-674695;Reactome: R-HSA-167172 "Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events";"Transcription of the HIV genome" maker-scaffold450-size872336-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold6509-size120655-augustus-gene-0.3-mRNA-1 5 Reactome: R-HSA-6798695;Reactome: R-HSA-5693571;Reactome: R-HSA-3270619;Reactome: R-HSA-164843;Reactome: R-HSA-1834949 "Neutrophil degranulation";"Nonhomologous End-Joining (NHEJ)";"IRF3-mediated induction of type I IFN";"2-LTR circle formation";"Cytosolic sensors of pathogen-associated DNA" maker-scaffold2053-size404028-augustus-gene-1.2-mRNA-1 7 Reactome: R-HSA-2173796;Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-2894862;Reactome: R-HSA-212436;Reactome: R-HSA-2122947;Reactome: R-HSA-2644606 "SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Generic Transcription Pathway";"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 PEST Domain Mutants" maker-scaffold2203-size384547-augustus-gene-2.5-mRNA-1 7 Reactome: R-HSA-5620922;Reactome: R-HSA-389957;Reactome: R-HSA-8950505;Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-390471;Reactome: R-HSA-6814122 "BBSome-mediated cargo-targeting to cilium";"Prefoldin mediated transfer of substrate to CCT/TriC";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding" maker-scaffold703-size704358-augustus-gene-4.6-mRNA-1 13 MetaCyc: PWY-6728;MetaCyc: PWY-7384;MetaCyc: PWY-5392;MetaCyc: PWY-5690;MetaCyc: PWY-561;KEGG: 00720+4.2.1.2;MetaCyc: PWY-8086;KEGG: 00620+4.2.1.2;KEGG: 00020+4.2.1.2;MetaCyc: PWY-7254;MetaCyc: PWY-6969;MetaCyc: PWY-5913;Reactome: R-HSA-71403 "Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Reductive TCA cycle II";"TCA cycle II (plants and fungi)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Carbon fixation pathways in prokaryotes";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Pyruvate metabolism";"Citrate cycle (TCA cycle)";"TCA cycle VII (acetate-producers)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Citric acid cycle (TCA cycle)" maker-scaffold120-size1377678-augustus-gene-10.4-mRNA-1 16 Reactome: R-HSA-174178;Reactome: R-HSA-2467813;Reactome: R-HSA-176412;Reactome: R-HSA-179409;Reactome: R-HSA-174154;Reactome: R-HSA-174048;Reactome: R-HSA-8853884;Reactome: R-HSA-174184;Reactome: R-HSA-983168;Reactome: R-HSA-176408;Reactome: R-HSA-2559582;Reactome: R-HSA-176409;Reactome: R-HSA-69017;Reactome: R-HSA-176407;Reactome: R-HSA-141430;Reactome: R-HSA-174084 "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Separation of Sister Chromatids";"Phosphorylation of the APC/C";"APC-Cdc20 mediated degradation of Nek2A";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdc20 mediated degradation of Cyclin B";"Transcriptional Regulation by VENTX";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of APC/C activators between G1/S and early anaphase";"Senescence-Associated Secretory Phenotype (SASP)";"APC/C:Cdc20 mediated degradation of mitotic proteins";"CDK-mediated phosphorylation and removal of Cdc6";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Autodegradation of Cdh1 by Cdh1:APC/C" maker-scaffold3503-size259644-augustus-gene-0.1-mRNA-1 16 Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-156827 "Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold3987-size227759-augustus-gene-1.4-mRNA-1 10 Reactome: R-HSA-5693616;Reactome: R-HSA-3108214;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-6804756;Reactome: R-HSA-5693579;Reactome: R-HSA-69473;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568 "Presynaptic phase of homologous DNA pairing and strand exchange";"SUMOylation of DNA damage response and repair proteins";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"Regulation of TP53 Activity through Phosphorylation";"Homologous DNA Pairing and Strand Exchange";"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates" maker-scaffold1405-size516327-augustus-gene-4.10-mRNA-1 4 Reactome: R-HSA-5693607;Reactome: R-HSA-5689880;Reactome: R-HSA-111465;Reactome: R-HSA-176187 "Processing of DNA double-strand break ends";"Ub-specific processing proteases";"Apoptotic cleavage of cellular proteins";"Activation of ATR in response to replication stress" maker-scaffold234-size1071331-augustus-gene-2.2-mRNA-1 4 Reactome: R-HSA-5656121;Reactome: R-HSA-110312;Reactome: R-HSA-5655862;Reactome: R-HSA-5656169 "Translesion synthesis by POLI";"Translesion synthesis by REV1";"Translesion synthesis by POLK";"Termination of translesion DNA synthesis" maker-scaffold342-size960086-augustus-gene-6.4-mRNA-1 2 Reactome: R-HSA-8951664;Reactome: R-HSA-983168 "Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold331-size1181569-augustus-gene-4.3-mRNA-1 6 Reactome: R-HSA-73856;Reactome: R-HSA-9010553;Reactome: R-HSA-72163;Reactome: R-HSA-159236;Reactome: R-HSA-72187;Reactome: R-HSA-975957 "RNA Polymerase II Transcription Termination";"Regulation of expression of SLITs and ROBOs";"mRNA Splicing - Major Pathway";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold2528-size345412-augustus-gene-1.9-mRNA-1 1 Reactome: R-HSA-912446 "Meiotic recombination" maker-scaffold7961-size80807-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-3214847;Reactome: R-HSA-171319 "HATs acetylate histones";"Telomere Extension By Telomerase" maker-scaffold1350-size519539-augustus-gene-4.5-mRNA-1 12 Reactome: R-HSA-381038;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-8854518;Reactome: R-HSA-2132295;Reactome: R-HSA-2565942;Reactome: R-HSA-3371497;Reactome: R-HSA-380320;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878 "XBP1(S) activates chaperone genes";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"AURKA Activation by TPX2";"MHC class II antigen presentation";"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recruitment of NuMA to mitotic centrosomes";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold4805-size188597-augustus-gene-0.2-mRNA-1 5 Reactome: R-HSA-917729;Reactome: R-HSA-9615710;Reactome: R-HSA-9610379;Reactome: R-HSA-162588;Reactome: R-HSA-174490 "Endosomal Sorting Complex Required For Transport (ESCRT)";"Late endosomal microautophagy";"HCMV Late Events";"Budding and maturation of HIV virion";"Membrane binding and targetting of GAG proteins" maker-scaffold5370-size181238-augustus-gene-0.7-mRNA-1 16 Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956 "Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" maker-scaffold74-size1547187-augustus-gene-5.2-mRNA-1 1 Reactome: R-HSA-4551638 "SUMOylation of chromatin organization proteins" augustus-scaffold937-size646146-processed-gene-4.2-mRNA-1 5 Reactome: R-HSA-3214815;Reactome: R-HSA-350054;Reactome: R-HSA-2894862;Reactome: R-HSA-2644606;Reactome: R-HSA-2122947 "HDACs deacetylate histones";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription" maker-scaffold3696-size246225-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold2418-size354941-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-5689880 "Ub-specific processing proteases" maker-scaffold1814-size438893-augustus-gene-2.1-mRNA-1 1 MetaCyc: PWY-7802 "N-end rule pathway II (prokaryotic)" maker-scaffold1362-size512754-augustus-gene-3.3-mRNA-1 20 Reactome: R-HSA-5656169;Reactome: R-HSA-5696397;Reactome: R-HSA-5685942;Reactome: R-HSA-69473;Reactome: R-HSA-69091;Reactome: R-HSA-110314;Reactome: R-HSA-5696400;Reactome: R-HSA-6804756;Reactome: R-HSA-5685938;Reactome: R-HSA-5656121;Reactome: R-HSA-5693616;Reactome: R-HSA-6782210;Reactome: R-HSA-5693607;Reactome: R-HSA-110312;Reactome: R-HSA-5651801;Reactome: R-HSA-5655862;Reactome: R-HSA-6782135;Reactome: R-HSA-176187;Reactome: R-HSA-110320;Reactome: R-HSA-174411 "Termination of translesion DNA synthesis";"Gap-filling DNA repair synthesis and ligation in GG-NER";"HDR through Homologous Recombination (HRR)";"G2/M DNA damage checkpoint";"Polymerase switching";"Recognition of DNA damage by PCNA-containing replication complex";"Dual Incision in GG-NER";"Regulation of TP53 Activity through Phosphorylation";"HDR through Single Strand Annealing (SSA)";"Translesion synthesis by POLI";"Presynaptic phase of homologous DNA pairing and strand exchange";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Processing of DNA double-strand break ends";"Translesion synthesis by REV1";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLK";"Dual incision in TC-NER";"Activation of ATR in response to replication stress";"Translesion Synthesis by POLH";"Polymerase switching on the C-strand of the telomere" maker-scaffold10316-size38130-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-389661 "Glyoxylate metabolism and glycine degradation" maker-scaffold1652-size482403-augustus-gene-3.3-mRNA-1 3 Reactome: R-HSA-5389840;Reactome: R-HSA-5368286;Reactome: R-HSA-5419276 "Mitochondrial translation elongation";"Mitochondrial translation initiation";"Mitochondrial translation termination" maker-scaffold2731-size324523-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-432047 "Passive transport by Aquaporins" maker-scaffold3541-size258001-augustus-gene-1.4-mRNA-1 3 KEGG: 00561+2.7.1.30;MetaCyc: PWY-4261;Reactome: R-HSA-75109 "Glycerolipid metabolism";"Glycerol degradation I";"Triglyceride biosynthesis" augustus-scaffold1625-size602874-processed-gene-4.0-mRNA-1 3 KEGG: 00561+2.7.1.30;Reactome: R-HSA-75109;MetaCyc: PWY-4261 "Glycerolipid metabolism";"Triglyceride biosynthesis";"Glycerol degradation I" maker-scaffold4109-size214973-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-392154;KEGG: 00230+4.6.1.2;Reactome: R-HSA-445355 "Nitric oxide stimulates guanylate cyclase";"Purine metabolism";"Smooth Muscle Contraction" maker-scaffold52-size1685179-augustus-gene-4.1-mRNA-1 1 MetaCyc: PWY-7942 "5-oxo-L-proline metabolism" maker-scaffold4972-size179711-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-204626;MetaCyc: PWY-5905 "Hypusine synthesis from eIF5A-lysine";"Hypusine biosynthesis" maker-scaffold58860-size10725-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-420029 "Tight junction interactions" maker-scaffold10588-size37299-augustus-gene-0.2-mRNA-1 8 Reactome: R-HSA-5628897;Reactome: R-HSA-6804756;Reactome: R-HSA-1445148;Reactome: R-HSA-2151209;Reactome: R-HSA-380972;Reactome: R-HSA-9613354;Reactome: R-HSA-1632852;Reactome: R-HSA-9619483 "TP53 Regulates Metabolic Genes";"Regulation of TP53 Activity through Phosphorylation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Activation of PPARGC1A (PGC-1alpha) by phosphorylation";"Energy dependent regulation of mTOR by LKB1-AMPK";"Lipophagy";"Macroautophagy";"Activation of AMPK downstream of NMDARs" maker-scaffold705-size705670-augustus-gene-2.7-mRNA-1 40 MetaCyc: PWY-6863;MetaCyc: PWY-7654;KEGG: 00650+4.2.1.17+1.1.1.35;MetaCyc: PWY-7094;MetaCyc: PWY-6583;KEGG: 00903+4.2.1.17;MetaCyc: PWY-6946;KEGG: 00640+4.2.1.17;KEGG: 00281+4.2.1.17+1.1.1.35;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-7401;MetaCyc: PWY-5136;MetaCyc: PWY-7726;MetaCyc: PWY-6435;MetaCyc: PWY-7007;KEGG: 00071+4.2.1.17+1.1.1.35;MetaCyc: PWY-7778;KEGG: 00362+4.2.1.17+1.1.1.35;KEGG: 00410+4.2.1.17;MetaCyc: PWY-6883;KEGG: 00720+4.2.1.17+1.1.1.35;MetaCyc: PWY-5789;MetaCyc: PWY-7779;KEGG: 00592+4.2.1.17;MetaCyc: PWY-7606;MetaCyc: PWY-6945;KEGG: 00930+4.2.1.17+1.1.1.35;KEGG: 00310+4.2.1.17+1.1.1.35;KEGG: 00360+4.2.1.17;KEGG: 00062+4.2.1.17+1.1.1.35;KEGG: 00623+1.1.1.35;MetaCyc: PWY-5177;MetaCyc: PWY-7656;MetaCyc: PWY-1361;MetaCyc: PWY-6944;MetaCyc: PWY-5109;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-7216;KEGG: 00627+4.2.1.17;MetaCyc: PWY-5138 "Pyruvate fermentation to hexanol (engineered)";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Butanoate metabolism";"Fatty acid salvage";"Pyruvate fermentation to butanol I";"Limonene and pinene degradation";"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Propanoate metabolism";"Geraniol degradation";"Valine, leucine and isoleucine degradation";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"Fatty acid beta-oxidation II (plant peroxisome)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"4-hydroxybenzoate biosynthesis III (plants)";"Methyl ketone biosynthesis (engineered)";"Fatty acid degradation";"2-methylpropene degradation";"Benzoate degradation";"beta-Alanine metabolism";"Pyruvate fermentation to butanol II (engineered)";"Carbon fixation pathways in prokaryotes";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Methyl tert-butyl ether degradation";"alpha-Linolenic acid metabolism";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"Caprolactam degradation";"Lysine degradation";"Phenylalanine metabolism";"Fatty acid elongation";"Toluene degradation";"Glutaryl-coa degradation";"Spodoptera littoralis pheromone biosynthesis";"Benzoyl-coa degradation I (aerobic)";"Androstenedione degradation";"Fermentation to 2-methylbutanoate";"Tryptophan metabolism";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Aminobenzoate degradation";"Fatty acid beta-oxidation IV (unsaturated, even number)" maker-scaffold279-size1022034-augustus-gene-6.3-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" augustus-scaffold1094-size582485-processed-gene-1.2-mRNA-1 24 Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-9619483;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-983189;Reactome: R-HSA-5663220 "COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"HCMV Early Events";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Activation of AMPK downstream of NMDARs";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Kinesins";"RHO GTPases Activate Formins" maker-scaffold1425-size501538-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold16-size2099125-augustus-gene-6.4-mRNA-1 1 Reactome: R-HSA-388844 "Receptor-type tyrosine-protein phosphatases" maker-scaffold2782-size318407-augustus-gene-2.7-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold7969-size80873-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold4648-size194973-augustus-gene-0.8-mRNA-1 7 Reactome: R-HSA-69205;Reactome: R-HSA-68827;Reactome: R-HSA-68689;Reactome: R-HSA-68962;Reactome: R-HSA-176187;Reactome: R-HSA-68949;Reactome: R-HSA-68867 "G1/S-Specific Transcription";"CDT1 association with the CDC6:ORC:origin complex";"CDC6 association with the ORC:origin complex";"Activation of the pre-replicative complex";"Activation of ATR in response to replication stress";"Orc1 removal from chromatin";"Assembly of the pre-replicative complex" maker-scaffold18115-size12562-augustus-gene-0.1-mRNA-1 16 Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-192823 "Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation" maker-scaffold2374-size359636-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-163560 "Triglyceride catabolism" maker-scaffold318-size984449-augustus-gene-5.4-mRNA-1 3 Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856 "mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination" maker-scaffold3602-size412592-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-72203 "Processing of Capped Intron-Containing Pre-mRNA" maker-scaffold238-size1772184-augustus-gene-12.3-mRNA-1 3 Reactome: R-HSA-8876198;Reactome: R-HSA-6811438;Reactome: R-HSA-6811440 "RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network" maker-scaffold1088-size573517-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-1971475 "A tetrasaccharide linker sequence is required for GAG synthesis" maker-scaffold4748-size189955-augustus-gene-0.5-mRNA-1 6 Reactome: R-HSA-163560;MetaCyc: PWY-6118;MetaCyc: PWY-6952;KEGG: 00564+1.1.5.3;MetaCyc: PWY-4261;Reactome: R-HSA-1483166 "Triglyceride catabolism";"Glycerol-3-phosphate shuttle";"Glycerophosphodiester degradation";"Glycerophospholipid metabolism";"Glycerol degradation I";"Synthesis of PA" maker-scaffold80-size1512238-augustus-gene-8.2-mRNA-1 2 Reactome: R-HSA-4570571;Reactome: R-HSA-446193 "Defective RFT1 causes RFT1-CDG (CDG-1n)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" maker-scaffold309-size990260-augustus-gene-6.0-mRNA-1 7 Reactome: R-HSA-1855204;KEGG: 04070+3.1.4.11;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6351;MetaCyc: PWY-7039;MetaCyc: PWY-6367;MetaCyc: PWY-8052 "Synthesis of IP3 and IP4 in the cytosol";"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Phosphatidate metabolism, as a signaling molecule";"D-myo-inositol-5-phosphate metabolism";"2-arachidonoylglycerol biosynthesis" maker-scaffold1442-size496382-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" maker-scaffold3973-size231003-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-6807878;Reactome: R-HSA-6811434 "COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold722-size707828-augustus-gene-2.3-mRNA-1 4 KEGG: 00520+3.2.1.14;MetaCyc: PWY-7822;MetaCyc: PWY-6902;MetaCyc: PWY-6855 "Amino sugar and nucleotide sugar metabolism";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Chitin degradation I (archaea)" maker-scaffold5427-size162585-augustus-gene-0.5-mRNA-1 4 KEGG: 00970+2.9.1.2;KEGG: 00450+2.9.1.2;MetaCyc: PWY-6281;Reactome: R-HSA-2408557 "Aminoacyl-tRNA biosynthesis";"Selenocompound metabolism";"L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Selenocysteine synthesis" maker-scaffold940-size620631-augustus-gene-2.2-mRNA-1 12 MetaCyc: PWY-7230;Reactome: R-HSA-2142789;MetaCyc: PWY-5856;MetaCyc: PWY-5855;KEGG: 00130+2.1.1.222+2.1.1.64;MetaCyc: PWY-5871;MetaCyc: PWY-5870;MetaCyc: PWY-5873;MetaCyc: PWY-5872;MetaCyc: PWY-6708;MetaCyc: PWY-5857;MetaCyc: PWY-7233 "Ubiquinol-6 biosynthesis from 4-aminobenzoate (yeast)";"Ubiquinol biosynthesis";"Ubiquinol-9 biosynthesis (prokaryotic)";"Ubiquinol-7 biosynthesis (prokaryotic)";"Ubiquinone and other terpenoid-quinone biosynthesis";"Ubiquinol-9 biosynthesis (eukaryotic)";"Ubiquinol-8 biosynthesis (eukaryotic)";"Ubiquinol-7 biosynthesis (eukaryotic)";"Ubiquinol-10 biosynthesis (eukaryotic)";"Ubiquinol-8 biosynthesis (prokaryotic)";"Ubiquinol-10 biosynthesis (prokaryotic)";"Ubiquinol-6 bypass biosynthesis (eukaryotic)" maker-scaffold3532-size258740-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-5693568 "Resolution of D-loop Structures through Holliday Junction Intermediates" maker-scaffold2387-size357183-augustus-gene-1.1-mRNA-1 5 Reactome: R-HSA-983170;Reactome: R-HSA-1655829;Reactome: R-HSA-204005;Reactome: R-HSA-2132295;Reactome: R-HSA-5694530 "Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"COPII-mediated vesicle transport";"MHC class II antigen presentation";"Cargo concentration in the ER" maker-scaffold383-size1216599-augustus-gene-11.6-mRNA-1 8 KEGG: 00052+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00520+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00500+2.7.1.1 "Galactose metabolism";"Fructose and mannose metabolism";"Streptomycin biosynthesis";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Amino sugar and nucleotide sugar metabolism";"Glycolysis";"Starch and sucrose metabolism" maker-scaffold3466-size262803-augustus-gene-1.8-mRNA-1 22 MetaCyc: PWY-7601;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-8041;MetaCyc: PWY-7725;MetaCyc: PWY-7035;MetaCyc: PWY-7606;MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-5353;MetaCyc: PWY-5080;MetaCyc: PWY-7053;MetaCyc: PWY-7049;MetaCyc: PWY-7592;MetaCyc: PWY-6958;MetaCyc: PWY-7728;MetaCyc: PWY-7727;MetaCyc: PWY-7724;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7726 "Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Docosahexaenoate biosynthesis I (lower eukaryotes)";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)" maker-scaffold7923-size147146-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold704-size706041-augustus-gene-4.2-mRNA-1 17 Reactome: R-HSA-6796648;Reactome: R-HSA-69473;Reactome: R-HSA-6804756;KEGG: 04926+2.7.11.1;Reactome: R-HSA-8953750;KEGG: 05165+2.7.11.1;Reactome: R-HSA-5693616;Reactome: R-HSA-75035;Reactome: R-HSA-1433557;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-5693607;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-176187;Reactome: R-HSA-69601 "TP53 Regulates Transcription of DNA Repair Genes";"G2/M DNA damage checkpoint";"Regulation of TP53 Activity through Phosphorylation";"Relaxin signaling pathway";"Transcriptional Regulation by E2F6";"Human papillomavirus infection";"Presynaptic phase of homologous DNA pairing and strand exchange";"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"Signaling by SCF-KIT";"Thermogenesis";"PI3K-Akt signaling pathway";"Processing of DNA double-strand break ends";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway";"Activation of ATR in response to replication stress";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A" maker-scaffold2150-size385540-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold1712-size451175-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold837-size1046862-augustus-gene-8.1-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold567-size783925-augustus-gene-0.0-mRNA-1 1 Reactome: R-HSA-6799198 "Complex I biogenesis" maker-scaffold71-size2844100-augustus-gene-7.2-mRNA-1 3 Reactome: R-HSA-264876;Reactome: R-HSA-5620916;Reactome: R-HSA-1445148 "Insulin processing";"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane" maker-scaffold3199-size281887-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-8874211 "CREB3 factors activate genes" maker-scaffold1797-size437762-augustus-gene-2.3-mRNA-1 2 KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788 "Starch and sucrose metabolism";"Cellulose degradation II (fungi)" maker-scaffold4793-size188136-augustus-gene-0.16-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" augustus-scaffold2695-size328406-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-5689896;Reactome: R-HSA-5689880 "Ovarian tumor domain proteases";"Ub-specific processing proteases" maker-scaffold2811-size315798-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-8949613 "Cristae formation" augustus-scaffold1983-size416296-processed-gene-2.3-mRNA-1 1 Reactome: R-HSA-6807505 "RNA polymerase II transcribes snRNA genes" maker-scaffold279-size1022034-augustus-gene-1.5-mRNA-1 10 MetaCyc: PWY-8055;MetaCyc: PWY-5667;MetaCyc: PWY-8053;KEGG: 00564+2.3.1.15;MetaCyc: PWY-8051;KEGG: 00561+2.3.1.15;MetaCyc: PWY-7587;MetaCyc: PWY-7411;MetaCyc: PWY-6453;Reactome: R-HSA-1483166 "Palmitoyl ethanolamide biosynthesis";"CDP-diacylglycerol biosynthesis I";"Anandamide biosynthesis II";"Glycerophospholipid metabolism";"Anandamide biosynthesis I";"Glycerolipid metabolism";"Oleate biosynthesis III (cyanobacteria)";"Phosphatidate biosynthesis (yeast)";"Stigma estolide biosynthesis";"Synthesis of PA" augustus-scaffold160-size1280976-processed-gene-9.0-mRNA-1 1 Reactome: R-HSA-880009 "Interconversion of 2-oxoglutarate and 2-hydroxyglutarate" maker-scaffold927-size634031-augustus-gene-5.1-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold3885-size234489-augustus-gene-1.7-mRNA-1 2 Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold155-size1267149-augustus-gene-6.17-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold6313-size145121-augustus-gene-0.4-mRNA-1 16 Reactome: R-HSA-70171;MetaCyc: PWY-2221;MetaCyc: PWY-7003;MetaCyc: PWY-6886;KEGG: 00010+4.2.1.11;MetaCyc: PWY-8004;KEGG: 00680+4.2.1.11;MetaCyc: PWY-7218;MetaCyc: PWY-1042;MetaCyc: PWY-7124;Reactome: R-HSA-70263;MetaCyc: PWY-6142;MetaCyc: PWY-1622;MetaCyc: PWY-6901;MetaCyc: PWY-5484;MetaCyc: PWY-5723 "Glycolysis";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Glycerol degradation to butanol";"1-butanol autotrophic biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Entner-Doudoroff pathway I";"Methane metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis IV (plant cytosol)";"Ethylene biosynthesis V (engineered)";"Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation I (serine pathway)";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Rubisco shunt" maker-scaffold3503-size259644-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-432722 "Golgi Associated Vesicle Biogenesis" augustus-scaffold183-size1182426-processed-gene-5.2-mRNA-1 3 Reactome: R-HSA-191859;Reactome: R-HSA-72165;Reactome: R-HSA-72163 "snRNP Assembly";"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway" maker-scaffold924-size626789-augustus-gene-1.1-mRNA-1 3 KEGG: 00730+3.1.3.1;KEGG: 00790+3.1.3.1;MetaCyc: PWY-5491 "Thiamine metabolism";"Folate biosynthesis";"Diethylphosphate degradation" maker-scaffold2345-size361280-augustus-gene-1.1-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold1891-size422512-augustus-gene-3.6-mRNA-1 12 KEGG: 00660+6.2.1.5;MetaCyc: PWY-5913;MetaCyc: PWY-6969;MetaCyc: PWY-5538;MetaCyc: PWY-5537;MetaCyc: PWY-5690;MetaCyc: PWY-5392;MetaCyc: PWY-7384;KEGG: 00720+6.2.1.5;MetaCyc: PWY-6728;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5 "C5-Branched dibasic acid metabolism";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Pyruvate fermentation to acetate VI";"Pyruvate fermentation to acetate V";"TCA cycle II (plants and fungi)";"Reductive TCA cycle II";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Citrate cycle (TCA cycle)";"Propanoate metabolism" augustus-scaffold330-size971189-processed-gene-6.2-mRNA-1 5 KEGG: 00720+1.5.1.20;MetaCyc: PWY-3841;Reactome: R-HSA-196757;MetaCyc: PWY-2201;KEGG: 00670+1.5.1.20 "Carbon fixation pathways in prokaryotes";"Folate transformations II (plants)";"Metabolism of folate and pterines";"Folate transformations I";"One carbon pool by folate" maker-scaffold716-size705642-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-71384 "Ethanol oxidation" augustus-scaffold19886-size14677-processed-gene-0.0-mRNA-1 6 Reactome: R-HSA-68867;Reactome: R-HSA-68949;Reactome: R-HSA-176187;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-69052 "Assembly of the pre-replicative complex";"Orc1 removal from chromatin";"Activation of ATR in response to replication stress";"Unwinding of DNA";"Activation of the pre-replicative complex";"Switching of origins to a post-replicative state" maker-scaffold97-size1441455-augustus-gene-7.4-mRNA-1 7 Reactome: R-HSA-73980;Reactome: R-HSA-749476;Reactome: R-HSA-76066;Reactome: R-HSA-76071;Reactome: R-HSA-76061;Reactome: R-HSA-73780;Reactome: R-HSA-1834949 "RNA Polymerase III Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Chain Elongation";"Cytosolic sensors of pathogen-associated DNA" augustus-scaffold22-size1954011-processed-gene-9.2-mRNA-1 5 Reactome: R-HSA-68962;Reactome: R-HSA-68867;Reactome: R-HSA-68949;Reactome: R-HSA-176187;Reactome: R-HSA-176974 "Activation of the pre-replicative complex";"Assembly of the pre-replicative complex";"Orc1 removal from chromatin";"Activation of ATR in response to replication stress";"Unwinding of DNA" maker-scaffold8142-size76799-augustus-gene-0.1-mRNA-1 5 KEGG: 00510+3.2.1.106;Reactome: R-HSA-532668;Reactome: R-HSA-4793954;MetaCyc: PWY-7919;MetaCyc: PWY-7918 "N-Glycan biosynthesis";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Defective MOGS causes MOGS-CDG (CDG-2b)";"Protein N-glycosylation processing phase (plants and animals)";"Protein N-glycosylation processing phase (yeast)" maker-scaffold5771-size146631-augustus-gene-0.5-mRNA-1 7 Reactome: R-HSA-389960;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-6814122;Reactome: R-HSA-5620922;Reactome: R-HSA-389957;Reactome: R-HSA-6798695 "Formation of tubulin folding intermediates by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"BBSome-mediated cargo-targeting to cilium";"Prefoldin mediated transfer of substrate to CCT/TriC";"Neutrophil degranulation" maker-scaffold214-size1117821-augustus-gene-10.2-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold2020-size406895-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-419771 "Opsins" maker-scaffold2238-size382513-augustus-gene-2.6-mRNA-1 13 Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339 "L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold2768-size319848-augustus-gene-2.5-mRNA-1 16 Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-72702 "Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition" maker-scaffold3428-size261468-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-163560 "Triglyceride catabolism" maker-scaffold2573-size340408-augustus-gene-1.1-mRNA-1 4 KEGG: 00534+2.4.2.26;KEGG: 00532+2.4.2.26;Reactome: R-HSA-1971475;MetaCyc: PWY-6557 "Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate";"A tetrasaccharide linker sequence is required for GAG synthesis";"Glycosaminoglycan-protein linkage region biosynthesis" maker-scaffold19-size2020504-augustus-gene-11.1-mRNA-1 2 Reactome: R-HSA-983168;Reactome: R-HSA-8951664 "Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation" maker-scaffold527-size817113-augustus-gene-7.6-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold482-size2148092-augustus-gene-8.3-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold587-size766357-augustus-gene-4.3-mRNA-1 3 Reactome: R-HSA-5693571;Reactome: R-HSA-164843;Reactome: R-HSA-3108214 "Nonhomologous End-Joining (NHEJ)";"2-LTR circle formation";"SUMOylation of DNA damage response and repair proteins" maker-scaffold1941-size415759-augustus-gene-1.2-mRNA-1 16 Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226 "Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold10121-size40387-augustus-gene-0.1-mRNA-1 3 KEGG: 00510+2.4.1.267;Reactome: R-HSA-4724289;Reactome: R-HSA-446193 "N-Glycan biosynthesis";"Defective ALG6 causes ALG6-CDG (CDG-1c)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" maker-scaffold3790-size360530-augustus-gene-2.8-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-156827 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold2877-size307340-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-5689896 "Ovarian tumor domain proteases" maker-scaffold152-size1274477-augustus-gene-4.3-mRNA-1 2 Reactome: R-HSA-70350;Reactome: R-HSA-168928 "Fructose catabolism";"DDX58/IFIH1-mediated induction of interferon-alpha/beta" maker-scaffold11956-size25364-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-72706;Reactome: R-HSA-72702 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition" maker-scaffold12-size2231781-augustus-gene-20.1-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold2910-size304931-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold1767-size445491-augustus-gene-3.6-mRNA-1 2 Reactome: R-HSA-445355;Reactome: R-HSA-390522 "Smooth Muscle Contraction";"Striated Muscle Contraction" maker-scaffold4201-size217929-augustus-gene-1.4-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold1721-size452177-augustus-gene-2.4-mRNA-1 3 Reactome: R-HSA-983168;Reactome: R-HSA-390471;Reactome: R-HSA-8951664 "Antigen processing: Ubiquitination & Proteasome degradation";"Association of TriC/CCT with target proteins during biosynthesis";"Neddylation" maker-scaffold5527-size222667-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold3539-size255017-augustus-gene-1.10-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold7209-size102110-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold1470-size491768-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-5666185 "RHO GTPases Activate Rhotekin and Rhophilins" maker-scaffold5322-size164179-augustus-gene-0.11-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold2455-size351638-augustus-gene-1.1-mRNA-1 6 KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23 "Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Xyloglucan degradation II (exoglucanase)";"Galactose metabolism";"Other glycan degradation" maker-scaffold4586-size198567-augustus-gene-0.6-mRNA-1 5 Reactome: R-HSA-9020702;Reactome: R-HSA-209560;Reactome: R-HSA-5205685;Reactome: R-HSA-209543;Reactome: R-HSA-205043 "Interleukin-1 signaling";"NF-kB is activated and signals survival";"Pink/Parkin Mediated Mitophagy";"p75NTR recruits signalling complexes";"NRIF signals cell death from the nucleus" maker-scaffold538-size806317-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-5656169 "Termination of translesion DNA synthesis" maker-scaffold330-size971189-augustus-gene-7.1-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-5628897 "Respiratory electron transport";"TP53 Regulates Metabolic Genes" maker-scaffold99-size1431018-augustus-gene-11.2-mRNA-1 1 Reactome: R-HSA-912446 "Meiotic recombination" augustus-scaffold5362-size162419-processed-gene-0.0-mRNA-1 6 Reactome: R-HSA-380994;Reactome: R-HSA-450604;Reactome: R-HSA-6791226;Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-450513 "ATF4 activates genes in response to endoplasmic reticulum stress";"KSRP (KHSRP) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol";"mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA" maker-scaffold494-size833938-augustus-gene-4.7-mRNA-1 1 Reactome: R-HSA-429947 "Deadenylation of mRNA" maker-scaffold4582-size198577-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-5601884;Reactome: R-HSA-1221632 "PIWI-interacting RNA (piRNA) biogenesis";"Meiotic synapsis" maker-scaffold652-size740944-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold734-size1099370-augustus-gene-9.8-mRNA-1 2 Reactome: R-HSA-983168;Reactome: R-HSA-8951664 "Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation" maker-scaffold652-size740944-augustus-gene-0.2-mRNA-1 6 Reactome: R-HSA-975957;Reactome: R-HSA-159236;Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-73856;Reactome: R-HSA-9010553 "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"RNA Polymerase II Transcription Termination";"Regulation of expression of SLITs and ROBOs" maker-scaffold1871-size425123-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold265-size1040580-augustus-gene-8.3-mRNA-1 2 Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold6369-size124130-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold6153-size133321-augustus-gene-0.4-mRNA-1 3 MetaCyc: PWY-7533;Reactome: R-HSA-2142691;Reactome: R-HSA-5423646 "Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Aflatoxin activation and detoxification" maker-scaffold758-size695357-augustus-gene-5.4-mRNA-1 2 Reactome: R-HSA-6798695;Reactome: R-HSA-8964038 "Neutrophil degranulation";"LDL clearance" maker-scaffold360-size947325-augustus-gene-2.2-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" augustus-scaffold2497-size348021-processed-gene-1.1-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold1659-size457379-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold5735-size147614-augustus-gene-0.3-mRNA-1 7 Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-76061;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-749476;Reactome: R-HSA-73980 "Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination" maker-scaffold373-size932444-augustus-gene-8.7-mRNA-1 3 Reactome: R-HSA-1445148;Reactome: R-HSA-264876;Reactome: R-HSA-5620916 "Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing";"VxPx cargo-targeting to cilium" augustus-scaffold1230-size543710-processed-gene-1.1-mRNA-1 3 Reactome: R-HSA-191859;Reactome: R-HSA-72165;Reactome: R-HSA-72163 "snRNP Assembly";"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway" maker-scaffold2708-size326647-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold2290-size369435-augustus-gene-2.7-mRNA-1 5 Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-2426168;Reactome: R-HSA-75105 "Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis" maker-scaffold414-size892355-augustus-gene-7.7-mRNA-1 1 KEGG: 00450+1.8.1.9 "Selenocompound metabolism" maker-scaffold1205-size548689-augustus-gene-3.1-mRNA-1 5 Reactome: R-HSA-4341670;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695;Reactome: R-HSA-1660662;Reactome: R-HSA-4085001 "Defective NEU1 causes sialidosis";"MHC class II antigen presentation";"Neutrophil degranulation";"Glycosphingolipid metabolism";"Sialic acid metabolism" maker-scaffold7937-size81646-augustus-gene-0.3-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis" maker-scaffold1249-size530743-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-2995383 "Initiation of Nuclear Envelope Reformation" maker-scaffold6568-size117700-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-5620924 "Intraflagellar transport" maker-scaffold684-size716621-augustus-gene-4.4-mRNA-1 3 Reactome: R-HSA-2024096;Reactome: R-HSA-2206302;Reactome: R-HSA-2024101 "HS-GAG degradation";"MPS I - Hurler syndrome";"CS/DS degradation" maker-scaffold2823-size316165-augustus-gene-2.2-mRNA-1 9 Reactome: R-HSA-3656237;Reactome: R-HSA-3560801;Reactome: R-HSA-2022928;Reactome: R-HSA-2024096;Reactome: R-HSA-1971475;Reactome: R-HSA-3656253;Reactome: R-HSA-3560783;Reactome: R-HSA-975634;Reactome: R-HSA-4420332 "Defective EXT2 causes exostoses 2";"Defective B3GAT3 causes JDSSDHD";"HS-GAG biosynthesis";"HS-GAG degradation";"A tetrasaccharide linker sequence is required for GAG synthesis";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"Defective B4GALT7 causes EDS, progeroid type";"Retinoid metabolism and transport";"Defective B3GALT6 causes EDSP2 and SEMDJL1" maker-scaffold574-size1811919-augustus-gene-9.7-mRNA-1 27 Reactome: R-HSA-159230;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-4085377;Reactome: R-HSA-168325;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-5619107;Reactome: R-HSA-165054;Reactome: R-HSA-4551638;Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-159227 "Transport of the SLBP Dependant Mature mRNA";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of SUMOylation proteins";"Viral Messenger RNA Synthesis";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of chromatin organization proteins";"snRNP Assembly";"HCMV Early Events";"Transport of the SLBP independent Mature mRNA" maker-scaffold4237-size214422-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-5693607 "Processing of DNA double-strand break ends" maker-scaffold1590-size464030-augustus-gene-1.3-mRNA-1 4 Reactome: R-HSA-2468052;Reactome: R-HSA-2470946;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813 "Establishment of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids" maker-scaffold1065-size721441-augustus-gene-6.5-mRNA-1 6 Reactome: R-HSA-450604;Reactome: R-HSA-380994;Reactome: R-HSA-6791226;Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-429958 "KSRP (KHSRP) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Major pathway of rRNA processing in the nucleolus and cytosol";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease" maker-scaffold1294-size527432-augustus-gene-3.1-mRNA-1 2 Reactome: R-HSA-3295583;Reactome: R-HSA-418890 "TRP channels";"Role of second messengers in netrin-1 signaling" maker-scaffold2727-size322384-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-430039 "mRNA decay by 5' to 3' exoribonuclease" maker-scaffold3941-size236702-augustus-gene-1.12-mRNA-1 1 Reactome: R-HSA-202733 "Cell surface interactions at the vascular wall" maker-scaffold6391-size139478-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-163210;Reactome: R-HSA-8949613 "Formation of ATP by chemiosmotic coupling";"Cristae formation" maker-scaffold25700-size17222-augustus-gene-0.0-mRNA-1 5 Reactome: R-HSA-2426168;Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-9029558;Reactome: R-HSA-75105 "Activation of gene expression by SREBF (SREBP)";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Fatty acyl-CoA biosynthesis" maker-scaffold1661-size458123-augustus-gene-3.7-mRNA-1 14 MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-5972;MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-7725;MetaCyc: PWY-7035;MetaCyc: PWY-8041;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199 "Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation" maker-scaffold1041-size588988-augustus-gene-3.3-mRNA-1 2 Reactome: R-HSA-416476;Reactome: R-HSA-375280 "G alpha (q) signalling events";"Amine ligand-binding receptors" maker-scaffold1099-size572324-augustus-gene-4.7-mRNA-1 2 Reactome: R-HSA-5576893;Reactome: R-HSA-5576892 "Phase 2 - plateau phase";"Phase 0 - rapid depolarisation" maker-scaffold5665-size151661-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-6811438 "Intra-Golgi traffic" maker-scaffold714-size709863-augustus-gene-6.2-mRNA-1 6 KEGG: 00750+2.6.1.52;Reactome: R-HSA-977347;KEGG: 00260+2.6.1.52;KEGG: 00270+2.6.1.52;MetaCyc: PWY-8010;KEGG: 00680+2.6.1.52 "Vitamin B6 metabolism";"Serine biosynthesis";"Glycine, serine and threonine metabolism";"Cysteine and methionine metabolism";"L-cysteine biosynthesis IX (Trichomonas vaginalis)";"Methane metabolism" maker-scaffold4520-size204570-augustus-gene-1.6-mRNA-1 2 Reactome: R-HSA-390918;Reactome: R-HSA-9033241 "Peroxisomal lipid metabolism";"Peroxisomal protein import" maker-scaffold7264-size97277-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold2382-size463072-augustus-gene-3.11-mRNA-1 3 Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72187 "RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing" augustus-scaffold3481-size260658-processed-gene-1.3-mRNA-1 2 Reactome: R-HSA-3299685;MetaCyc: PWY-6854 "Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)" maker-scaffold744-size697364-augustus-gene-3.3-mRNA-1 6 Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-9648025;Reactome: R-HSA-68877 "Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase" maker-scaffold4073-size460237-augustus-gene-3.5-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold5029-size177753-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-1660662 "Glycosphingolipid metabolism" maker-scaffold24-size1918667-augustus-gene-6.0-mRNA-1 56 Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-1236978;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-1169091;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-75815;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176 "NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"Cross-presentation of soluble exogenous antigens (endosomes)";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Activation of NF-kappaB in B cells";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Ubiquitin-dependent degradation of Cyclin D";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"ER-Phagosome pathway";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" maker-scaffold5586-size153387-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold2184-size382720-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-5173214;Reactome: R-HSA-5083635 "O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)" maker-scaffold4730-size192217-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-8876725 "Protein methylation" augustus-scaffold2640-size385986-processed-gene-0.0-mRNA-1 6 Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257 "EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion" maker-scaffold187-size1172215-augustus-gene-10.3-mRNA-1 8 Reactome: R-HSA-912446;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693616;Reactome: R-HSA-5693554;Reactome: R-HSA-8953750;Reactome: R-HSA-5685938;Reactome: R-HSA-5693579 "Meiotic recombination";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Presynaptic phase of homologous DNA pairing and strand exchange";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Transcriptional Regulation by E2F6";"HDR through Single Strand Annealing (SSA)";"Homologous DNA Pairing and Strand Exchange" augustus-scaffold573-size939396-processed-gene-5.0-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold2966-size376486-augustus-gene-2.8-mRNA-1 4 Reactome: R-HSA-77387;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-917977 "Insulin receptor recycling";"Ion channel transport";"ROS and RNS production in phagocytes";"Transferrin endocytosis and recycling" maker-scaffold3448-size295922-augustus-gene-1.9-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold803-size668641-processed-gene-5.0-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold1498-size486925-augustus-gene-3.14-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold3110-size290132-augustus-gene-0.1-mRNA-1 6 MetaCyc: PWY-7238;Reactome: R-HSA-70221;MetaCyc: PWY-5941;MetaCyc: PWY-6737;KEGG: 00500+2.4.1.1;MetaCyc: PWY-6731 "Sucrose biosynthesis II";"Glycogen breakdown (glycogenolysis)";"Glycogen degradation II";"Starch degradation V";"Starch and sucrose metabolism";"Starch degradation III" maker-scaffold4901-size184945-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-9603798;Reactome: R-HSA-1369062 "Class I peroxisomal membrane protein import";"ABC transporters in lipid homeostasis" augustus-scaffold298-size1000112-processed-gene-4.0-mRNA-1 2 MetaCyc: PWY-6281;KEGG: 00970+6.1.1.11 "L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Aminoacyl-tRNA biosynthesis" maker-scaffold1317-size522717-augustus-gene-2.2-mRNA-1 5 Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288 "Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1" maker-scaffold1713-size449133-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-163560 "Triglyceride catabolism" augustus-scaffold1085-size818524-processed-gene-3.1-mRNA-1 14 Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-167243;Reactome: R-HSA-167242;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-112382;Reactome: R-HSA-674695;Reactome: R-HSA-167246;Reactome: R-HSA-167200 "HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Tat-mediated HIV elongation arrest and recovery";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Pre-transcription Events";"Tat-mediated elongation of the HIV-1 transcript";"Formation of HIV-1 elongation complex containing HIV-1 Tat" maker-scaffold31077-size6841-augustus-gene-0.0-mRNA-1 14 MetaCyc: PWY-801;MetaCyc: PWY-6309;MetaCyc: PWY-6936;KEGG: 00380+2.6.1.7;Reactome: R-HSA-8964208;KEGG: 00270+4.4.1.13;Reactome: R-HSA-71240;Reactome: R-HSA-8964539;KEGG: 00450+4.4.1.13;MetaCyc: PWY-1187;MetaCyc: PWY-2821;MetaCyc: PWY-601;MetaCyc: PWY-7901;MetaCyc: PWY-6842 "Homocysteine and cysteine interconversion";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Seleno-amino acid biosynthesis (plants)";"Tryptophan metabolism";"Phenylalanine metabolism";"Cysteine and methionine metabolism";"Tryptophan catabolism";"Glutamate and glutamine metabolism";"Selenocompound metabolism";"Glucosinolate biosynthesis from homomethionine";"Glucosinolate biosynthesis from phenylalanine";"Glucosinolate biosynthesis from tryptophan";"Glucosinolate biosynthesis from tyrosine";"Glutathione-mediated detoxification II" maker-scaffold265-size1040580-augustus-gene-9.7-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold1892-size431009-augustus-gene-3.4-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold2927-size305201-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-389661 "Glyoxylate metabolism and glycine degradation" maker-scaffold7309-size96292-augustus-gene-0.4-mRNA-1 6 KEGG: 00562+3.1.3.66;MetaCyc: PWY-6368;Reactome: R-HSA-1855183;Reactome: R-HSA-1660516;Reactome: R-HSA-1660499;KEGG: 04070+3.1.3.66 "Inositol phosphate metabolism";"3-phosphoinositide degradation";"Synthesis of IP2, IP, and Ins in the cytosol";"Synthesis of PIPs at the early endosome membrane";"Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol signaling system" maker-scaffold114-size1392915-augustus-gene-6.3-mRNA-1 2 Reactome: R-HSA-8866654;MetaCyc: PWY-7511 "E3 ubiquitin ligases ubiquitinate target proteins";"Protein ubiquitination" maker-scaffold668-size718058-augustus-gene-3.8-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold200-size1131578-augustus-gene-1.1-mRNA-1 3 Reactome: R-HSA-1445148;Reactome: R-HSA-5620916;Reactome: R-HSA-264876 "Translocation of SLC2A4 (GLUT4) to the plasma membrane";"VxPx cargo-targeting to cilium";"Insulin processing" maker-scaffold2868-size312599-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-6802953;Reactome: R-HSA-5658442 "RAS signaling downstream of NF1 loss-of-function variants";"Regulation of RAS by GAPs" maker-scaffold2119-size387529-augustus-gene-2.12-mRNA-1 1 Reactome: R-HSA-6784531 "tRNA processing in the nucleus" maker-scaffold618-size1587611-augustus-gene-10.1-mRNA-1 6 Reactome: R-HSA-5693616;Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-176187;Reactome: R-HSA-6804756;Reactome: R-HSA-5685938 "Presynaptic phase of homologous DNA pairing and strand exchange";"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Activation of ATR in response to replication stress";"Regulation of TP53 Activity through Phosphorylation";"HDR through Single Strand Annealing (SSA)" maker-scaffold22-size1954011-augustus-gene-11.2-mRNA-1 56 Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-1169091;Reactome: R-HSA-8948751;Reactome: R-HSA-174154;Reactome: R-HSA-174113;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-5632684;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902 "Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Activation of NF-kappaB in B cells";"Regulation of PTEN stability and activity";"APC/C:Cdc20 mediated degradation of Securin";"SCF-beta-TrCP mediated degradation of Emi1";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Hedgehog 'on' state";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity" augustus-scaffold22049-size10298-processed-gene-0.0-mRNA-1 6 Reactome: R-HSA-1660499;KEGG: 04070+3.1.3.66;Reactome: R-HSA-1660516;Reactome: R-HSA-1855183;MetaCyc: PWY-6368;KEGG: 00562+3.1.3.66 "Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol signaling system";"Synthesis of PIPs at the early endosome membrane";"Synthesis of IP2, IP, and Ins in the cytosol";"3-phosphoinositide degradation";"Inositol phosphate metabolism" maker-scaffold1215-size545102-augustus-gene-1.3-mRNA-1 1 KEGG: 04660+2.7.10.2 "T cell receptor signaling pathway" maker-scaffold3733-size243954-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" maker-scaffold1654-size576866-augustus-gene-1.4-mRNA-1 6 MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884;Reactome: R-HSA-9640463;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733 "Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Wax biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis" maker-scaffold5851-size143303-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-1368108 "BMAL1:CLOCK,NPAS2 activates circadian gene expression" maker-scaffold75-size1537034-augustus-gene-3.1-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" augustus-scaffold75-size1537034-processed-gene-12.1-mRNA-1 11 MetaCyc: PWY-5913;MetaCyc: PWY-6969;MetaCyc: PWY-7254;KEGG: 00020+1.1.1.42;KEGG: 00480+1.1.1.42;Reactome: R-HSA-71403;KEGG: 00720+1.1.1.42;MetaCyc: PWY-7124;MetaCyc: PWY-6728;MetaCyc: PWY-7268;MetaCyc: PWY-6549 "Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"TCA cycle VII (acetate-producers)";"Citrate cycle (TCA cycle)";"Glutathione metabolism";"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Ethylene biosynthesis V (engineered)";"Methylaspartate cycle";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"L-glutamine biosynthesis III" maker-scaffold63-size1621153-augustus-gene-8.9-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold2246-size380338-augustus-gene-2.7-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" augustus-scaffold3671-size249477-processed-gene-0.2-mRNA-1 2 Reactome: R-HSA-8949613;Reactome: R-HSA-163210 "Cristae formation";"Formation of ATP by chemiosmotic coupling" maker-scaffold3296-size275586-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold6814-size110242-processed-gene-0.3-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" augustus-scaffold8673-size65049-processed-gene-0.1-mRNA-1 6 Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257 "Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion" augustus-scaffold7149-size100101-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-6799198 "Complex I biogenesis" maker-scaffold11657-size43021-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-6799198;Reactome: R-HSA-611105 "Complex I biogenesis";"Respiratory electron transport" maker-scaffold4396-size210357-augustus-gene-1.2-mRNA-1 5 MetaCyc: PWY-3821;KEGG: 00520+2.7.1.6;MetaCyc: PWY-6527;MetaCyc: PWY-6317;KEGG: 00052+2.7.1.6 "D-galactose detoxification";"Amino sugar and nucleotide sugar metabolism";"Stachyose degradation";"D-galactose degradation I (Leloir pathway)";"Galactose metabolism" maker-scaffold4322-size209533-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold360-size947325-augustus-gene-1.1-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold6251-size131294-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold354-size960420-augustus-gene-4.6-mRNA-1 1 Reactome: R-HSA-70221 "Glycogen breakdown (glycogenolysis)" augustus-scaffold4621-size196199-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold3898-size231515-processed-gene-1.0-mRNA-1 1 Reactome: R-HSA-2559584 "Formation of Senescence-Associated Heterochromatin Foci (SAHF)" maker-scaffold3471-size261666-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-5173214;Reactome: R-HSA-5083635 "O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)" maker-scaffold7946-size83567-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-3295583;Reactome: R-HSA-418890 "TRP channels";"Role of second messengers in netrin-1 signaling" maker-scaffold3319-size280897-augustus-gene-1.5-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" augustus-scaffold183-size1182426-processed-gene-5.1-mRNA-1 2 Reactome: R-HSA-6796648;Reactome: R-HSA-6783310 "TP53 Regulates Transcription of DNA Repair Genes";"Fanconi Anemia Pathway" maker-scaffold389-size1115929-augustus-gene-10.3-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold944-size619264-augustus-gene-2.1-mRNA-1 4 Reactome: R-HSA-8951664;Reactome: R-HSA-8856825;Reactome: R-HSA-5696394;Reactome: R-HSA-6781823 "Neddylation";"Cargo recognition for clathrin-mediated endocytosis";"DNA Damage Recognition in GG-NER";"Formation of TC-NER Pre-Incision Complex" maker-scaffold2190-size381572-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold929-size627189-augustus-gene-5.5-mRNA-1 31 MetaCyc: PWY-5973;MetaCyc: PWY-6282;MetaCyc: PWY-7858;MetaCyc: PWY-5142;MetaCyc: PWY-8047;MetaCyc: PWY-7746;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;MetaCyc: PWY-7663;MetaCyc: PWY-5367;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWY-5366;Reactome: R-HSA-2426168;MetaCyc: PWY-6113;Reactome: R-HSA-75105;MetaCyc: PWY-5971;MetaCyc: PWY-5966-1;Reactome: R-HSA-163765;MetaCyc: PWY-4381;MetaCyc: PWY-5147;MetaCyc: PWY-5994;MetaCyc: PWY-7664;MetaCyc: PWY-6519;MetaCyc: PWY-7388;MetaCyc: PWYG-321;MetaCyc: PWY-6799;MetaCyc: PWY-8049;MetaCyc: PWY-8012;MetaCyc: PWY-5989;MetaCyc: PWY-7723;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41 "Cis-vaccenate biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"(5Z)-dodecenoate biosynthesis II";"Acyl-[acyl-carrier protein] thioesterase pathway";"Bryostatin biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Gondoate biosynthesis (anaerobic)";"Petroselinate biosynthesis";"Fatty acid biosynthesis";"Palmitoleate biosynthesis II (plants and bacteria)";"Activation of gene expression by SREBF (SREBP)";"Superpathway of mycolate biosynthesis";"Fatty acyl-CoA biosynthesis";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"ChREBP activates metabolic gene expression";"Fatty acid biosynthesis initiation (bacteria and plants)";"Oleate biosynthesis I (plants)";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Oleate biosynthesis IV (anaerobic)";"8-amino-7-oxononanoate biosynthesis I";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"";"Fatty acid biosynthesis initiation (plant mitochondria)";"Pederin biosynthesis";"Mupirocin biosynthesis";"Stearate biosynthesis II (bacteria and plants)";"Bacterial bioluminescence";"Biotin metabolism" maker-scaffold3960-size230789-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-418594 "G alpha (i) signalling events" maker-scaffold368-size944798-augustus-gene-7.3-mRNA-1 1 Reactome: R-HSA-5693571 "Nonhomologous End-Joining (NHEJ)" maker-scaffold4353-size245099-augustus-gene-0.1-mRNA-1 19 Reactome: R-HSA-2029482;Reactome: R-HSA-5627123;Reactome: R-HSA-983231;Reactome: R-HSA-389359;Reactome: R-HSA-182971;Reactome: R-HSA-428543;Reactome: R-HSA-3928662;Reactome: R-HSA-5663213;Reactome: R-HSA-525793;Reactome: R-HSA-418885;Reactome: R-HSA-8950505;Reactome: R-HSA-5625970;Reactome: R-HSA-114604;Reactome: R-HSA-4420097;Reactome: R-HSA-194840;Reactome: R-HSA-8964616;Reactome: R-HSA-5687128;Reactome: R-HSA-5663220;Reactome: R-HSA-5626467 "Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases activate PAKs";"Factors involved in megakaryocyte development and platelet production";"CD28 dependent Vav1 pathway";"EGFR downregulation";"Inactivation of CDC42 and RAC1";"EPHB-mediated forward signaling";"RHO GTPases Activate WASPs and WAVEs";"Myogenesis";"DCC mediated attractive signaling";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"RHO GTPases activate KTN1";"GPVI-mediated activation cascade";"VEGFA-VEGFR2 Pathway";"Rho GTPase cycle";"G beta:gamma signalling through CDC42";"MAPK6/MAPK4 signaling";"RHO GTPases Activate Formins";"RHO GTPases activate IQGAPs" maker-scaffold1937-size439103-augustus-gene-2.1-mRNA-1 13 Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-2408557;Reactome: R-HSA-975956 "Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" maker-scaffold1856-size433932-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-6784531 "tRNA processing in the nucleus" maker-scaffold3037-size295564-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-204005 "COPII-mediated vesicle transport" maker-scaffold1018-size599003-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" augustus-scaffold1569-size472905-processed-gene-0.0-mRNA-1 5 MetaCyc: PWY-6902;MetaCyc: PWY-7822;Reactome: R-HSA-189085;KEGG: 00520+3.2.1.14;MetaCyc: PWY-6855 "Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Digestion of dietary carbohydrate";"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)" maker-scaffold574-size1811919-augustus-gene-9.8-mRNA-1 27 Reactome: R-HSA-5619107;Reactome: R-HSA-165054;Reactome: R-HSA-4551638;Reactome: R-HSA-159227;Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-4085377;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-168325;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-9610379;Reactome: R-HSA-168276 "Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of chromatin organization proteins";"Transport of the SLBP independent Mature mRNA";"snRNP Assembly";"HCMV Early Events";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of SUMOylation proteins";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Viral Messenger RNA Synthesis";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways" maker-scaffold7406-size93462-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-425561 "Sodium/Calcium exchangers" maker-scaffold316-size983291-augustus-gene-8.6-mRNA-1 2 Reactome: R-HSA-5173214;Reactome: R-HSA-5083635 "O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)" maker-scaffold3628-size251978-augustus-gene-0.3-mRNA-1 2 MetaCyc: PWY-6854;Reactome: R-HSA-3299685 "Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species" maker-scaffold525-size816837-augustus-gene-3.2-mRNA-1 56 Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-174113;Reactome: R-HSA-5689880;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978;Reactome: R-HSA-69601;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768 "Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"SCF-beta-TrCP mediated degradation of Emi1";"Ub-specific processing proteases";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD" maker-scaffold4954-size181538-augustus-gene-0.7-mRNA-1 3 Reactome: R-HSA-5696394;Reactome: R-HSA-3108214;Reactome: R-HSA-5696395 "DNA Damage Recognition in GG-NER";"SUMOylation of DNA damage response and repair proteins";"Formation of Incision Complex in GG-NER" maker-scaffold23-size1922111-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold279-size1022034-augustus-gene-1.4-mRNA-1 8 KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;Reactome: R-HSA-1483148;KEGG: 04658+3.1.3.16;MetaCyc: PWY-5668;MetaCyc: PWY-7817;KEGG: 00564+3.1.3.27;MetaCyc: PWY-5269 "T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Synthesis of PG";"Th1 and Th2 cell differentiation";"Cardiolipin biosynthesis I";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Cardiolipin biosynthesis II" maker-scaffold3587-size253751-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-5223345;Reactome: R-HSA-425393 "Miscellaneous transport and binding events";"Transport of inorganic cations/anions and amino acids/oligopeptides" maker-scaffold818-size662412-augustus-gene-4.4-mRNA-1 40 MetaCyc: PWY-5138;KEGG: 00627+4.2.1.17;MetaCyc: PWY-7216;MetaCyc: PWY-6944;MetaCyc: PWY-5109;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-1361;MetaCyc: PWY-7656;KEGG: 00623+1.1.1.35;KEGG: 00062+4.2.1.17+1.1.1.35;MetaCyc: PWY-5177;KEGG: 00360+4.2.1.17;KEGG: 00310+4.2.1.17+1.1.1.35;MetaCyc: PWY-6945;KEGG: 00930+4.2.1.17+1.1.1.35;MetaCyc: PWY-7606;MetaCyc: PWY-7779;KEGG: 00592+4.2.1.17;MetaCyc: PWY-5789;KEGG: 00410+4.2.1.17;MetaCyc: PWY-6883;KEGG: 00720+4.2.1.17+1.1.1.35;KEGG: 00362+4.2.1.17+1.1.1.35;MetaCyc: PWY-6435;MetaCyc: PWY-7007;MetaCyc: PWY-7778;KEGG: 00071+4.2.1.17+1.1.1.35;MetaCyc: PWY-7726;MetaCyc: PWY-7401;MetaCyc: PWY-5136;KEGG: 00281+4.2.1.17+1.1.1.35;KEGG: 00640+4.2.1.17;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-6946;MetaCyc: PWY-6583;KEGG: 00903+4.2.1.17;KEGG: 00650+4.2.1.17+1.1.1.35;MetaCyc: PWY-7094;MetaCyc: PWY-7654;MetaCyc: PWY-6863 "Fatty acid beta-oxidation IV (unsaturated, even number)";"Aminobenzoate degradation";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Androstenedione degradation";"Fermentation to 2-methylbutanoate";"Tryptophan metabolism";"Benzoyl-coa degradation I (aerobic)";"Spodoptera littoralis pheromone biosynthesis";"Toluene degradation";"Fatty acid elongation";"Glutaryl-coa degradation";"Phenylalanine metabolism";"Lysine degradation";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"Caprolactam degradation";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Methyl tert-butyl ether degradation";"alpha-Linolenic acid metabolism";"3-hydroxypropanoate/4-hydroxybutanate cycle";"beta-Alanine metabolism";"Pyruvate fermentation to butanol II (engineered)";"Carbon fixation pathways in prokaryotes";"Benzoate degradation";"4-hydroxybenzoate biosynthesis III (plants)";"Methyl ketone biosynthesis (engineered)";"2-methylpropene degradation";"Fatty acid degradation";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"Fatty acid beta-oxidation II (plant peroxisome)";"Geraniol degradation";"Propanoate metabolism";"Valine, leucine and isoleucine degradation";"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Pyruvate fermentation to butanol I";"Limonene and pinene degradation";"Butanoate metabolism";"Fatty acid salvage";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Pyruvate fermentation to hexanol (engineered)" maker-scaffold325-size972641-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-425986 "Sodium/Proton exchangers" maker-scaffold2217-size789673-augustus-gene-3.2-mRNA-1 10 Reactome: R-HSA-9619483;Reactome: R-HSA-1632852;Reactome: R-HSA-380972;Reactome: R-HSA-9613354;Reactome: R-HSA-2151209;Reactome: R-HSA-200425;Reactome: R-HSA-1445148;Reactome: R-HSA-163680;Reactome: R-HSA-6804756;Reactome: R-HSA-5628897 "Activation of AMPK downstream of NMDARs";"Macroautophagy";"Energy dependent regulation of mTOR by LKB1-AMPK";"Lipophagy";"Activation of PPARGC1A (PGC-1alpha) by phosphorylation";"Carnitine metabolism";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"AMPK inhibits chREBP transcriptional activation activity";"Regulation of TP53 Activity through Phosphorylation";"TP53 Regulates Metabolic Genes" maker-scaffold5944-size138980-augustus-gene-0.6-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold1797-size437762-augustus-gene-1.5-mRNA-1 2 MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4 "Cellulose degradation II (fungi)";"Starch and sucrose metabolism" maker-scaffold369-size941827-augustus-gene-7.6-mRNA-1 2 Reactome: R-HSA-400253;Reactome: R-HSA-2151201 "Circadian Clock";"Transcriptional activation of mitochondrial biogenesis" maker-scaffold3562-size254441-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold897-size639067-augustus-gene-4.4-mRNA-1 4 MetaCyc: PWY-5189;Reactome: R-HSA-189451;KEGG: 00860+2.5.1.61;MetaCyc: PWY-5188 "Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)" maker-scaffold3150-size285093-augustus-gene-1.16-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold682-size719083-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-1474228 "Degradation of the extracellular matrix" maker-scaffold2246-size380338-augustus-gene-1.2-mRNA-1 11 Reactome: R-HSA-383280;Reactome: R-HSA-1368082;Reactome: R-HSA-1989781;Reactome: R-HSA-212436;Reactome: R-HSA-2151201;Reactome: R-HSA-400253;Reactome: R-HSA-9018519;Reactome: R-HSA-381340;Reactome: R-HSA-1368108;Reactome: R-HSA-400206;Reactome: R-HSA-2426168 "Nuclear Receptor transcription pathway";"RORA activates gene expression";"PPARA activates gene expression";"Generic Transcription Pathway";"Transcriptional activation of mitochondrial biogenesis";"Circadian Clock";"Estrogen-dependent gene expression";"Transcriptional regulation of white adipocyte differentiation";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Regulation of lipid metabolism by PPARalpha";"Activation of gene expression by SREBF (SREBP)" maker-scaffold3863-size240586-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-6799198;Reactome: R-HSA-611105 "Complex I biogenesis";"Respiratory electron transport" maker-scaffold92-size1446267-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-379726 "Mitochondrial tRNA aminoacylation" maker-scaffold937-size646146-augustus-gene-5.4-mRNA-1 2 Reactome: R-HSA-1989781;Reactome: R-HSA-381340 "PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation" maker-scaffold4249-size215222-augustus-gene-1.5-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold4898-size184604-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-163765 "ChREBP activates metabolic gene expression" maker-scaffold1912-size427002-augustus-gene-3.14-mRNA-1 13 MetaCyc: PWY-7182;MetaCyc: PWY-7102;KEGG: 00900+2.5.1.10+2.5.1.1;MetaCyc: PWY-6383;MetaCyc: PWY-6859;MetaCyc: PWY-5122;MetaCyc: PWY-5123;MetaCyc: PWY-7141;MetaCyc: PWY-7709;MetaCyc: PWY-7721;MetaCyc: PWY-7410;MetaCyc: PWY-7659;MetaCyc: PWY-7736 "Linalool biosynthesis I";"Bisabolene biosynthesis (engineered)";"Terpenoid backbone biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"All-trans-farnesol biosynthesis";"Geranyl diphosphate biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"(3S)-linalool biosynthesis";"(3R)-linalool biosynthesis";"Methyl phomopsenoate biosynthesis";"Ipsdienol biosynthesis";"Viridicatumtoxin biosynthesis";"Stellatic acid biosynthesis" maker-scaffold2750-size610360-augustus-gene-2.6-mRNA-1 2 Reactome: R-HSA-432720;Reactome: R-HSA-432722 "Lysosome Vesicle Biogenesis";"Golgi Associated Vesicle Biogenesis" maker-scaffold1557-size476207-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-446210 "Synthesis of UDP-N-acetyl-glucosamine" maker-scaffold778-size781968-augustus-gene-6.15-mRNA-1 2 KEGG: 00260+2.1.2.10;KEGG: 00670+2.1.2.10 "Glycine, serine and threonine metabolism";"One carbon pool by folate" maker-scaffold539-size890513-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold4156-size219797-augustus-gene-1.5-mRNA-1 3 Reactome: R-HSA-2029482;Reactome: R-HSA-4420097;Reactome: R-HSA-5663213 "Regulation of actin dynamics for phagocytic cup formation";"VEGFA-VEGFR2 Pathway";"RHO GTPases Activate WASPs and WAVEs" maker-scaffold10168-size40541-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold1682-size453968-augustus-gene-3.8-mRNA-1 1 Reactome: R-HSA-71288 "Creatine metabolism" maker-scaffold3325-size272273-augustus-gene-1.6-mRNA-1 3 Reactome: R-HSA-1445148;Reactome: R-HSA-5620916;Reactome: R-HSA-264876 "Translocation of SLC2A4 (GLUT4) to the plasma membrane";"VxPx cargo-targeting to cilium";"Insulin processing" maker-scaffold4830-size336221-augustus-gene-0.1-mRNA-1 18 KEGG: 00220+2.6.1.1;KEGG: 00950+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00960+2.6.1.1;MetaCyc: PWY-6643;KEGG: 00400+2.6.1.1;MetaCyc: PWY-6642;MetaCyc: PWY-7383;KEGG: 00330+2.6.1.1;MetaCyc: PWY-6638;MetaCyc: PWY-7115;KEGG: 00401+2.6.1.1;KEGG: 00270+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00360+2.6.1.1;KEGG: 00710+2.6.1.1;KEGG: 00250+2.6.1.1;MetaCyc: PWY-7117 "Arginine biosynthesis";"Isoquinoline alkaloid biosynthesis";"Partial TCA cycle (obligate autotrophs)";"Tropane, piperidine and pyridine alkaloid biosynthesis";"Coenzyme M biosynthesis II";"Phenylalanine, tyrosine and tryptophan biosynthesis";"(R)-cysteate degradation";"Anaerobic energy metabolism (invertebrates, cytosol)";"Arginine and proline metabolism";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Novobiocin biosynthesis";"Cysteine and methionine metabolism";"Tyrosine metabolism";"Phenylalanine metabolism";"Carbon fixation in photosynthetic organisms";"Alanine, aspartate and glutamate metabolism";"C4 photosynthetic carbon assimilation cycle, PEPCK type" maker-scaffold2730-size323892-augustus-gene-2.8-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold613-size750366-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-71262 "Carnitine synthesis" maker-scaffold53-size1679291-augustus-gene-9.1-mRNA-1 4 Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-8866654;Reactome: R-HSA-112382 "RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"E3 ubiquitin ligases ubiquitinate target proteins";"Formation of RNA Pol II elongation complex" maker-scaffold31991-size15279-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" maker-scaffold37237-size6177-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold19353-size21932-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-525793 "Myogenesis" maker-scaffold2321-size365104-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-211945 "Phase I - Functionalization of compounds" augustus-scaffold89944-size1507-processed-gene-0.0-mRNA-1 3 KEGG: 00240+3.5.4.12;Reactome: R-HSA-499943;MetaCyc: PWY-7210 "Pyrimidine metabolism";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides biosynthesis from CTP" augustus-scaffold2069-size397560-processed-gene-2.6-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold353-size1293853-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-264876 "Insulin processing" augustus-scaffold17914-size16187-processed-gene-0.0-mRNA-1 10 KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;Reactome: R-HSA-2206292;KEGG: 00604+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00531+3.2.1.23;Reactome: R-HSA-6798695;Reactome: R-HSA-2024096;KEGG: 00600+3.2.1.23;Reactome: R-HSA-2160916 "Galactose metabolism";"Other glycan degradation";"MPS VII - Sly syndrome";"Glycosphingolipid biosynthesis - ganglio series";"Xyloglucan degradation II (exoglucanase)";"Glycosaminoglycan degradation";"Neutrophil degranulation";"HS-GAG degradation";"Sphingolipid metabolism";"Hyaluronan uptake and degradation" maker-scaffold2154-size385484-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" augustus-scaffold2378-size361371-processed-gene-2.7-mRNA-1 5 Reactome: R-HSA-901042;Reactome: R-HSA-879415;Reactome: R-HSA-532668;Reactome: R-HSA-8957275;Reactome: R-HSA-381426 "Calnexin/calreticulin cycle";"Advanced glycosylation endproduct receptor signaling";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Post-translational protein phosphorylation";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" maker-scaffold3481-size260658-augustus-gene-1.6-mRNA-1 4 Reactome: R-HSA-381033;Reactome: R-HSA-8963889;Reactome: R-HSA-8874211;Reactome: R-HSA-1655829 "ATF6 (ATF6-alpha) activates chaperones";"Assembly of active LPL and LIPC lipase complexes";"CREB3 factors activate genes";"Regulation of cholesterol biosynthesis by SREBP (SREBF)" maker-scaffold528-size819583-augustus-gene-0.5-mRNA-1 4 Reactome: R-HSA-71737;MetaCyc: PWY-7807;KEGG: 00190+3.6.1.1;MetaCyc: PWY-7805 "Pyrophosphate hydrolysis";"Glyphosate degradation III";"Oxidative phosphorylation";"(aminomethyl)phosphonate degradation" maker-scaffold9486-size50595-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold2641-size327397-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" augustus-scaffold1337-size521071-processed-gene-4.0-mRNA-1 2 Reactome: R-HSA-8856828;Reactome: R-HSA-8856825 "Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis" maker-scaffold94-size2257390-augustus-gene-12.3-mRNA-1 1 Reactome: R-HSA-211945 "Phase I - Functionalization of compounds" maker-scaffold3889-size248034-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-8856828 "Clathrin-mediated endocytosis" maker-scaffold3550-size256511-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold8539-size68886-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-6782861 "Synthesis of wybutosine at G37 of tRNA(Phe)" maker-scaffold1226-size555396-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold7244-size97556-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-8949664 "Processing of SMDT1" maker-scaffold218-size1199926-augustus-gene-2.1-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold487-size840725-augustus-gene-7.4-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold3062-size294130-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" augustus-scaffold4437-size204471-processed-gene-1.1-mRNA-1 5 Reactome: R-HSA-917977;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-77387 "Transferrin endocytosis and recycling";"Ion channel transport";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Insulin receptor recycling" maker-scaffold4955-size184968-augustus-gene-0.7-mRNA-1 3 Reactome: R-HSA-6811438;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878 "Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport" maker-scaffold7309-size96292-augustus-gene-0.5-mRNA-1 9 Reactome: R-HSA-73779;Reactome: R-HSA-73776;Reactome: R-HSA-6804756;Reactome: R-HSA-167161;Reactome: R-HSA-75953;Reactome: R-HSA-167162;Reactome: R-HSA-674695;Reactome: R-HSA-76042;Reactome: R-HSA-167172 "RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Promoter Escape";"Regulation of TP53 Activity through Phosphorylation";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Transcription of the HIV genome" augustus-scaffold6205-size130184-processed-gene-0.1-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold432-size880960-augustus-gene-3.1-mRNA-1 57 Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-5632684;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-174113;Reactome: R-HSA-174154;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-1169091;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-2871837;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-6798695;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601 "Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Hedgehog 'on' state";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"SCF-beta-TrCP mediated degradation of Emi1";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"Activation of NF-kappaB in B cells";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"FCERI mediated NF-kB activation";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Neutrophil degranulation";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A" maker-scaffold3020-size296314-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-901032 "ER Quality Control Compartment (ERQC)" maker-scaffold2091-size395923-augustus-gene-2.4-mRNA-1 9 MetaCyc: PWY-7533;KEGG: 00480+2.5.1.18;MetaCyc: PWY-6842;KEGG: 00980+2.5.1.18;MetaCyc: PWY-4061;MetaCyc: PWY-7112;KEGG: 00982+2.5.1.18;Reactome: R-HSA-156590;KEGG: 00983+2.5.1.18 "Gliotoxin biosynthesis";"Glutathione metabolism";"Glutathione-mediated detoxification II";"Metabolism of xenobiotics by cytochrome P450";"Glutathione-mediated detoxification I";"4-hydroxy-2-nonenal detoxification";"Drug metabolism - cytochrome P450";"Glutathione conjugation";"Drug metabolism - other enzymes" maker-scaffold20-size2005619-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" augustus-scaffold7011-size114137-processed-gene-0.2-mRNA-1 1 Reactome: R-HSA-427601 "Multifunctional anion exchangers" maker-scaffold1513-size517322-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-189451 "Heme biosynthesis" maker-scaffold1564-size657218-augustus-gene-0.2-mRNA-1 4 MetaCyc: PWY-5028;KEGG: 00340+4.3.1.3;Reactome: R-HSA-70921;MetaCyc: PWY-5030 "L-histidine degradation II";"Histidine metabolism";"Histidine catabolism";"L-histidine degradation III" maker-scaffold3738-size244942-augustus-gene-0.2-mRNA-1 4 Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-6781823 "Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of TC-NER Pre-Incision Complex" maker-scaffold2724-size322262-augustus-gene-1.1-mRNA-1 58 Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-1169091;Reactome: R-HSA-174113;Reactome: R-HSA-174154;Reactome: R-HSA-5689880;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-75815;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-69601;Reactome: R-HSA-5676590;Reactome: R-HSA-72706;Reactome: R-HSA-5362768;Reactome: R-HSA-1236978;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-5607761;Reactome: R-HSA-72702;Reactome: R-HSA-4641257;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-5358346 "Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Activation of NF-kappaB in B cells";"SCF-beta-TrCP mediated degradation of Emi1";"APC/C:Cdc20 mediated degradation of Securin";"Ub-specific processing proteases";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Ubiquitin-dependent degradation of Cyclin D";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"ER-Phagosome pathway";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"NIK-->noncanonical NF-kB signaling";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Cross-presentation of soluble exogenous antigens (endosomes)";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Dectin-1 mediated noncanonical NF-kB signaling";"Ribosomal scanning and start codon recognition";"Degradation of AXIN";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis" maker-scaffold454-size870616-augustus-gene-4.6-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold2355-size362042-augustus-gene-2.4-mRNA-1 4 Reactome: R-HSA-499943;MetaCyc: PWY-7221;Reactome: R-HSA-2161541;KEGG: 00230+2.7.4.8 "Interconversion of nucleotide di- and triphosphates";"Guanosine ribonucleotides de novo biosynthesis";"Abacavir metabolism";"Purine metabolism" maker-scaffold432-size880960-augustus-gene-7.4-mRNA-1 8 KEGG: 00250+6.3.4.5;MetaCyc: PWY-4983;MetaCyc: PWY-5154;MetaCyc: PWY-5;Reactome: R-HSA-70635;MetaCyc: PWY-4984;MetaCyc: PWY-7400;KEGG: 00220+6.3.4.5 "Alanine, aspartate and glutamate metabolism";"Nitric oxide biosynthesis II (mammals)";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"Canavanine biosynthesis";"Urea cycle";"Urea cycle";"L-arginine biosynthesis IV (archaebacteria)";"Arginine biosynthesis" maker-scaffold908-size631064-augustus-gene-4.5-mRNA-1 15 Reactome: R-HSA-2219530;Reactome: R-HSA-912526;Reactome: R-HSA-114604;Reactome: R-HSA-1433557;Reactome: R-HSA-912631;Reactome: R-HSA-9009391;Reactome: R-HSA-1257604;Reactome: R-HSA-6811558;Reactome: R-HSA-8853659;Reactome: R-HSA-1266695;Reactome: R-HSA-388841;Reactome: R-HSA-1660499;Reactome: R-HSA-416476;Reactome: R-HSA-512988;Reactome: R-HSA-389357 "Constitutive Signaling by Aberrant PI3K in Cancer";"Interleukin receptor SHC signaling";"GPVI-mediated activation cascade";"Signaling by SCF-KIT";"Regulation of signaling by CBL";"Extra-nuclear estrogen signaling";"PIP3 activates AKT signaling";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"RET signaling";"Interleukin-7 signaling";"Costimulation by the CD28 family";"Synthesis of PIPs at the plasma membrane";"G alpha (q) signalling events";"Interleukin-3, Interleukin-5 and GM-CSF signaling";"CD28 dependent PI3K/Akt signaling" maker-scaffold6373-size124760-augustus-gene-0.5-mRNA-1 14 MetaCyc: PWY-6803;Reactome: R-HSA-1482788;Reactome: R-HSA-975634;KEGG: 00590+3.1.1.4;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;MetaCyc: PWY-7416;MetaCyc: PWY-8053;MetaCyc: PWY-7409;KEGG: 00564+3.1.1.4+3.1.1.5;KEGG: 00592+3.1.1.4;MetaCyc: PWY-8051;KEGG: 00591+3.1.1.4;MetaCyc: PWY-7783 "Phosphatidylcholine acyl editing";"Acyl chain remodelling of PC";"Retinoid metabolism and transport";"Arachidonic acid metabolism";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Anandamide biosynthesis II";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Glycerophospholipid metabolism";"alpha-Linolenic acid metabolism";"Anandamide biosynthesis I";"Linoleic acid metabolism";"Plasmalogen degradation" maker-scaffold3458-size261098-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-5689603;Reactome: R-HSA-5696394 "UCH proteinases";"DNA Damage Recognition in GG-NER" maker-scaffold1521-size478967-augustus-gene-3.5-mRNA-1 2 Reactome: R-HSA-9010553;Reactome: R-HSA-975957 "Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold489-size833491-augustus-gene-6.5-mRNA-1 3 KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16 "T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation" maker-scaffold2653-size330232-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-71403 "Citric acid cycle (TCA cycle)" maker-scaffold1654-size576866-augustus-gene-3.1-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" maker-scaffold8079-size118220-augustus-gene-0.8-mRNA-1 5 MetaCyc: PWY-6121;Reactome: R-HSA-73817;MetaCyc: PWY-6277;KEGG: 00230+6.3.5.3;MetaCyc: PWY-6122 "5-aminoimidazole ribonucleotide biosynthesis I";"Purine ribonucleoside monophosphate biosynthesis";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"Purine metabolism";"5-aminoimidazole ribonucleotide biosynthesis II" maker-scaffold1139-size564129-augustus-gene-2.0-mRNA-1 13 MetaCyc: PWY-7184;KEGG: 00500+3.6.1.9;KEGG: 00230+3.6.1.9;Reactome: R-HSA-74259;MetaCyc: PWY-7821;KEGG: 00230+3.6.1.66;MetaCyc: PWY-7187;KEGG: 00760+3.6.1.9;KEGG: 00240+3.6.1.9;KEGG: 00770+3.6.1.9;MetaCyc: PWY-6545;KEGG: 00740+3.6.1.9;MetaCyc: PWY-7206 "Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Starch and sucrose metabolism";"Purine metabolism";"Purine catabolism";"Tunicamycin biosynthesis";"Purine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Nicotinate and nicotinamide metabolism";"Pyrimidine metabolism";"Pantothenate and CoA biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Riboflavin metabolism";"Pyrimidine deoxyribonucleotides dephosphorylation" maker-scaffold301-size1419381-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold1551-size476177-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-162658 "Golgi Cisternae Pericentriolar Stack Reorganization" augustus-scaffold4199-size217219-processed-gene-1.1-mRNA-1 5 KEGG: 00380+1.2.4.2;KEGG: 00020+1.2.4.2;Reactome: R-HSA-389661;MetaCyc: PWY-5084;KEGG: 00310+1.2.4.2 "Tryptophan metabolism";"Citrate cycle (TCA cycle)";"Glyoxylate metabolism and glycine degradation";"2-oxoglutarate decarboxylation to succinyl-CoA";"Lysine degradation" maker-scaffold5347-size306568-augustus-gene-1.2-mRNA-1 6 KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00531+3.2.1.23 "Galactose metabolism";"Other glycan degradation";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Xyloglucan degradation II (exoglucanase)";"Glycosaminoglycan degradation" maker-scaffold6302-size125407-augustus-gene-0.1-mRNA-1 6 KEGG: 00332+2.7.2.11;MetaCyc: PWY-6922;KEGG: 00332+2.7.2.11+1.2.1.41;KEGG: 00330+2.7.2.11+1.2.1.41;Reactome: R-HSA-8964539;KEGG: 00330+2.7.2.11 "Carbapenem biosynthesis";"L-Ndelta-acetylornithine biosynthesis";"Carbapenem biosynthesis";"Arginine and proline metabolism";"Glutamate and glutamine metabolism";"Arginine and proline metabolism" maker-scaffold4280-size212499-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-204005;Reactome: R-HSA-8876198 "COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs" augustus-scaffold5315-size182073-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-5658442 "Regulation of RAS by GAPs" maker-scaffold5507-size157877-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-6811440 "Retrograde transport at the Trans-Golgi-Network" maker-scaffold2979-size300432-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-983168;Reactome: R-HSA-8951664 "Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation" maker-scaffold4807-size190326-augustus-gene-0.6-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold114-size1392915-augustus-gene-3.5-mRNA-1 2 KEGG: 00670+2.1.2.10;KEGG: 00260+2.1.2.10 "One carbon pool by folate";"Glycine, serine and threonine metabolism" maker-scaffold989-size604863-augustus-gene-5.4-mRNA-1 11 Reactome: R-HSA-2219530;Reactome: R-HSA-9664565;Reactome: R-HSA-8863795;Reactome: R-HSA-8847993;Reactome: R-HSA-1227986;Reactome: R-HSA-1963642;Reactome: R-HSA-1257604;Reactome: R-HSA-1250196;Reactome: R-HSA-5673001;Reactome: R-HSA-6811558;Reactome: R-HSA-6785631 "Constitutive Signaling by Aberrant PI3K in Cancer";"Signaling by ERBB2 KD Mutants";"Downregulation of ERBB2 signaling";"ERBB2 Activates PTK6 Signaling";"Signaling by ERBB2";"PI3K events in ERBB2 signaling";"PIP3 activates AKT signaling";"SHC1 events in ERBB2 signaling";"RAF/MAP kinase cascade";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"ERBB2 Regulates Cell Motility" maker-scaffold5112-size241653-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" maker-scaffold2154-size385484-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold567-size783925-augustus-gene-2.1-mRNA-1 2 Reactome: R-HSA-2132295;Reactome: R-HSA-877300 "MHC class II antigen presentation";"Interferon gamma signaling" maker-scaffold6792-size110464-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold742-size696548-augustus-gene-3.7-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold3228-size280635-augustus-gene-1.2-mRNA-1 3 KEGG: 00561+3.1.1.3;MetaCyc: PWY-6857;Reactome: R-HSA-192456 "Glycerolipid metabolism";"Retinol biosynthesis";"Digestion of dietary lipid" maker-scaffold1453-size499979-augustus-gene-3.8-mRNA-1 2 KEGG: 00051+5.3.1.5;KEGG: 00040+5.3.1.5 "Fructose and mannose metabolism";"Pentose and glucuronate interconversions" maker-scaffold585-size771849-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-5205685;Reactome: R-HSA-983231 "Pink/Parkin Mediated Mitophagy";"Factors involved in megakaryocyte development and platelet production" maker-scaffold757-size686786-augustus-gene-2.2-mRNA-1 179 Reactome: R-HSA-68827;Reactome: R-HSA-5654732;Reactome: R-HSA-5654727;Reactome: R-HSA-5696395;Reactome: R-HSA-977225;Reactome: R-HSA-5696400;Reactome: R-HSA-2559582;Reactome: R-HSA-5658442;Reactome: R-HSA-9613829;Reactome: R-HSA-209560;Reactome: R-HSA-72689;Reactome: R-HSA-1799339;Reactome: R-HSA-174178;Reactome: R-HSA-975956;Reactome: R-HSA-174490;Reactome: R-HSA-2644606;Reactome: R-HSA-450302;Reactome: R-HSA-110312;Reactome: R-HSA-3769402;Reactome: R-HSA-4641257;Reactome: R-HSA-9645460;Reactome: R-HSA-8875360;Reactome: R-HSA-9013507;Reactome: R-HSA-5654726;Reactome: R-HSA-450321;Reactome: R-HSA-445989;Reactome: R-HSA-5610780;Reactome: R-HSA-195253;Reactome: R-HSA-9636383;Reactome: R-HSA-75815;Reactome: R-HSA-6804756;Reactome: R-HSA-1234176;Reactome: R-HSA-5656169;Reactome: R-HSA-9033241;Reactome: R-HSA-4641263;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-6782135;Reactome: R-HSA-901032;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-2173795;Reactome: R-HSA-937041;Reactome: R-HSA-6782210;Reactome: R-HSA-2173788;Reactome: R-HSA-382556;Reactome: R-HSA-6781827;Reactome: R-HSA-68949;Reactome: R-HSA-6804760;Reactome: R-HSA-983168;Reactome: R-HSA-211733;Reactome: R-HSA-6807004;Reactome: R-HSA-8939236;Reactome: R-HSA-5358346;Reactome: R-HSA-5685942;Reactome: R-HSA-3785653;Reactome: R-HSA-5362768;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-9646399;Reactome: R-HSA-532668;Reactome: R-HSA-168927;Reactome: R-HSA-205043;Reactome: R-HSA-9615710;Reactome: R-HSA-917729;Reactome: R-HSA-168638;Reactome: R-HSA-180585;Reactome: R-HSA-5656121;Reactome: R-HSA-4608870;Reactome: R-HSA-1236382;Reactome: R-HSA-110314;Reactome: R-HSA-936440;Reactome: R-HSA-1236974;Reactome: R-HSA-2565942;Reactome: R-HSA-5668541;Reactome: R-HSA-187577;Reactome: R-HSA-110320;Reactome: R-HSA-2559585;Reactome: R-HSA-9633012;Reactome: R-HSA-9020702;Reactome: R-HSA-2691232;Reactome: R-HSA-1169408;Reactome: R-HSA-975144;Reactome: R-HSA-8876493;Reactome: R-HSA-168928;Reactome: R-HSA-174048;Reactome: R-HSA-937042;Reactome: R-HSA-5693607;Reactome: R-HSA-156827;Reactome: R-HSA-8866654;Reactome: R-HSA-6783310;Reactome: R-HSA-201681;Reactome: R-HSA-162588;Reactome: R-HSA-2979096;Reactome: R-HSA-5687128;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-912631;Reactome: R-HSA-975110;Reactome: R-HSA-937072;Reactome: R-HSA-5689896;Reactome: R-HSA-8951664;Reactome: R-HSA-5655862;Reactome: R-HSA-5357905;Reactome: R-HSA-179409;Reactome: R-HSA-5607761;Reactome: R-HSA-3134975;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-1358803;Reactome: R-HSA-2559580;Reactome: R-HSA-3322077;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-9013973;Reactome: R-HSA-400253;Reactome: R-HSA-917937;Reactome: R-HSA-8856825;Reactome: R-HSA-2173791;Reactome: R-HSA-5684264;Reactome: R-HSA-6804757;Reactome: R-HSA-975163;Reactome: R-HSA-2122948;Reactome: R-HSA-174113;Reactome: R-HSA-6781823;Reactome: R-HSA-209543;Reactome: R-HSA-8948751;Reactome: R-HSA-1169091;Reactome: R-HSA-1295596;Reactome: R-HSA-174184;Reactome: R-HSA-2871837;Reactome: R-HSA-936964;Reactome: R-HSA-69231;Reactome: R-HSA-5357956;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-5675221;Reactome: R-HSA-5689901;Reactome: R-HSA-5696394;Reactome: R-HSA-72764;Reactome: R-HSA-174084;Reactome: R-HSA-5696397;Reactome: R-HSA-5607764;Reactome: R-HSA-8849469;Reactome: R-HSA-5676590;Reactome: R-HSA-2122947;Reactome: R-HSA-69601;Reactome: R-HSA-182971;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-5205685;Reactome: R-HSA-9637628;Reactome: R-HSA-69541;Reactome: R-HSA-450408;Reactome: R-HSA-937039;Reactome: R-HSA-202424;Reactome: R-HSA-5693565;Reactome: R-HSA-8866652;Reactome: R-HSA-8863795;Reactome: R-HSA-156902;Reactome: R-HSA-8939902;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5689877;Reactome: R-HSA-9604323;Reactome: R-HSA-175474;Reactome: R-HSA-2467813;Reactome: R-HSA-2173796;Reactome: R-HSA-8856828;Reactome: R-HSA-9014325;Reactome: R-HSA-1253288;Reactome: R-HSA-5675482;Reactome: R-HSA-2894862;Reactome: R-HSA-8948747;Reactome: R-HSA-2672351;Reactome: R-HSA-5610785;Reactome: R-HSA-5654733;Reactome: R-HSA-8854050 "CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of FGFR3 signaling";"Negative regulation of FGFR2 signaling";"Formation of Incision Complex in GG-NER";"Amyloid fiber formation";"Dual Incision in GG-NER";"Senescence-Associated Secretory Phenotype (SASP)";"Regulation of RAS by GAPs";"Chaperone Mediated Autophagy";"NF-kB is activated and signals survival";"Formation of a pool of free 40S subunits";"SRP-dependent cotranslational protein targeting to membrane";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Membrane binding and targetting of GAG proteins";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"activated TAK1 mediates p38 MAPK activation";"Translesion synthesis by REV1";"Deactivation of the beta-catenin transactivating complex";"Degradation of AXIN";"Alpha-protein kinase 1 signaling pathway";"InlB-mediated entry of Listeria monocytogenes into host cell";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Negative regulation of FGFR1 signaling";"JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"Degradation of GLI1 by the proteasome";"Degradation of beta-catenin by the destruction complex";"Prevention of phagosomal-lysosomal fusion";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of TP53 Activity through Phosphorylation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Termination of translesion DNA synthesis";"Peroxisomal protein import";"Regulation of FZD by ubiquitination";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Dual incision in TC-NER";"ER Quality Control Compartment (ERQC)";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"Downregulation of SMAD2/3:SMAD4 transcriptional activity";"IKK complex recruitment mediated by RIP1";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Downregulation of TGF-beta receptor signaling";"ABC-family proteins mediated transport";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Orc1 removal from chromatin";"Regulation of TP53 Activity through Methylation";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Negative regulation of MET activity";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog ligand biogenesis";"HDR through Homologous Recombination (HRR)";"Myoclonic epilepsy of Lafora";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Aggrephagy";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"TICAM1, RIP1-mediated IKK complex recruitment";"NRIF signals cell death from the nucleus";"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)";"NOD1/2 Signaling Pathway";"Vif-mediated degradation of APOBEC3G";"Translesion synthesis by POLI";"Asymmetric localization of PCP proteins";"Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants";"Recognition of DNA damage by PCNA-containing replication complex";"Negative regulators of DDX58/IFIH1 signaling";"ER-Phagosome pathway";"Regulation of PLK1 Activity at G2/M Transition";"TNFR2 non-canonical NF-kB pathway";"SCF(Skp2)-mediated degradation of p27/p21";"Translesion Synthesis by POLH";"Oncogene Induced Senescence";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Interleukin-1 signaling";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"ISG15 antiviral mechanism";"IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation";"InlA-mediated entry of Listeria monocytogenes into host cells";"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"APC/C:Cdc20 mediated degradation of Cyclin B";"IRAK2 mediated activation of TAK1 complex";"Processing of DNA double-strand break ends";"L13a-mediated translational silencing of Ceruloplasmin expression";"E3 ubiquitin ligases ubiquitinate target proteins";"Fanconi Anemia Pathway";"TCF dependent signaling in response to WNT";"Budding and maturation of HIV virion";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"MAPK6/MAPK4 signaling";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"Regulation of signaling by CBL";"TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling";"TRAF6-mediated induction of TAK1 complex within TLR4 complex";"Ovarian tumor domain proteases";"Neddylation";"Translesion synthesis by POLK";"Regulation of TNFR1 signaling";"APC-Cdc20 mediated degradation of Nek2A";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of innate immune responses to cytosolic DNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Downregulation of ERBB2:ERBB3 signaling";"Oxidative Stress Induced Senescence";"Glycogen synthesis";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"TICAM1-dependent activation of IRF3/IRF7";"Circadian Clock";"Iron uptake and transport";"Cargo recognition for clathrin-mediated endocytosis";"TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Regulation of TP53 Degradation";"IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation";"Activated NOTCH1 Transmits Signal to the Nucleus";"SCF-beta-TrCP mediated degradation of Emi1";"Formation of TC-NER Pre-Incision Complex";"p75NTR recruits signalling complexes";"Regulation of PTEN stability and activity";"Activation of NF-kappaB in B cells";"Spry regulation of FGF signaling";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"FCERI mediated NF-kB activation";"Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon";"Cyclin D associated events in G1";"TNFR1-induced NFkappaB signaling pathway";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Negative regulation of MAPK pathway";"Metalloprotease DUBs";"DNA Damage Recognition in GG-NER";"Eukaryotic Translation Termination";"Autodegradation of Cdh1 by Cdh1:APC/C";"Gap-filling DNA repair synthesis and ligation in GG-NER";"CLEC7A (Dectin-1) signaling";"PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1";"NIK-->noncanonical NF-kB signaling";"NOTCH1 Intracellular Domain Regulates Transcription";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"EGFR downregulation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Pink/Parkin Mediated Mitophagy";"Modulation by Mtb of host immune system";"Stabilization of p53";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"IRAK1 recruits IKK complex";"Downstream TCR signaling";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Synthesis of active ubiquitin: roles of E1 and E2 enzymes";"Downregulation of ERBB2 signaling";"Peptide chain elongation";"Regulation of RUNX2 expression and activity";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"Josephin domain DUBs";"Negative regulation of NOTCH4 signaling";"Assembly Of The HIV Virion";"Separation of Sister Chromatids";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Clathrin-mediated endocytosis";"TICAM1,TRAF6-dependent induction of TAK1 complex";"Downregulation of ERBB4 signaling";"Regulation of necroptotic cell death";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Regulation of PTEN localization";"Stimuli-sensing channels";"GLI3 is processed to GLI3R by the proteasome";"Negative regulation of FGFR4 signaling";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" maker-scaffold8096-size78151-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold4954-size181538-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-5689880 "Ub-specific processing proteases" maker-scaffold1618-size585542-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold2884-size307877-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold3417-size265844-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold8064-size85301-augustus-gene-0.1-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I" maker-scaffold869-size1142520-augustus-gene-9.0-mRNA-1 5 Reactome: R-HSA-917977;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-77387 "Transferrin endocytosis and recycling";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Ion channel transport";"Insulin receptor recycling" maker-scaffold2955-size571925-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold14892-size16806-augustus-gene-0.1-mRNA-1 29 Reactome: R-HSA-75955;Reactome: R-HSA-73776;Reactome: R-HSA-167152;Reactome: R-HSA-5696395;Reactome: R-HSA-5696400;Reactome: R-HSA-167162;Reactome: R-HSA-167160;Reactome: R-HSA-167246;Reactome: R-HSA-76042;Reactome: R-HSA-112382;Reactome: R-HSA-73772;Reactome: R-HSA-6796648;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-73863;Reactome: R-HSA-73779;Reactome: R-HSA-6782135;Reactome: R-HSA-73762;Reactome: R-HSA-167161;Reactome: R-HSA-75953;Reactome: R-HSA-72086;Reactome: R-HSA-6782210;Reactome: R-HSA-167200;Reactome: R-HSA-674695;Reactome: R-HSA-427413;Reactome: R-HSA-6781827;Reactome: R-HSA-77075;Reactome: R-HSA-167172;Reactome: R-HSA-6781823 "RNA Polymerase II Transcription Elongation";"RNA Polymerase II Promoter Escape";"Formation of HIV elongation complex in the absence of HIV Tat";"Formation of Incision Complex in GG-NER";"Dual Incision in GG-NER";"RNA Polymerase II HIV Promoter Escape";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of RNA Pol II elongation complex";"RNA Polymerase I Promoter Escape";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase I Transcription Termination";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Dual incision in TC-NER";"RNA Polymerase I Transcription Initiation";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation";"mRNA Capping";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Pre-transcription Events";"NoRC negatively regulates rRNA expression";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA Pol II CTD phosphorylation and interaction with CE";"Transcription of the HIV genome";"Formation of TC-NER Pre-Incision Complex" maker-scaffold1630-size463965-augustus-gene-2.3-mRNA-1 5 Reactome: R-HSA-389960;Reactome: R-HSA-390450;Reactome: R-HSA-390471;Reactome: R-HSA-6814122;Reactome: R-HSA-389957 "Formation of tubulin folding intermediates by CCT/TriC";"Folding of actin by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Prefoldin mediated transfer of substrate to CCT/TriC" maker-scaffold621-size746392-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-6807505 "RNA polymerase II transcribes snRNA genes" maker-scaffold1661-size458123-augustus-gene-0.0-mRNA-1 14 MetaCyc: PWY-8041;MetaCyc: PWY-7725;MetaCyc: PWY-7035;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-5972;MetaCyc: PWY-7602;MetaCyc: PWY-7619 "Ultra-long-chain fatty acid biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Stearate biosynthesis I (animals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis" maker-scaffold8048-size79911-augustus-gene-0.2-mRNA-1 19 Reactome: R-HSA-432142;Reactome: R-HSA-5686938;Reactome: R-HSA-975634;Reactome: R-HSA-8963888;Reactome: R-HSA-8957275;Reactome: R-HSA-8964046;Reactome: R-HSA-3000480;Reactome: R-HSA-3000497;Reactome: R-HSA-8856825;Reactome: R-HSA-8866423;Reactome: R-HSA-3000484;Reactome: R-HSA-8856828;Reactome: R-HSA-8964026;Reactome: R-HSA-8964041;Reactome: R-HSA-202733;Reactome: R-HSA-8964038;Reactome: R-HSA-3000471;Reactome: R-HSA-381426;Reactome: R-HSA-8963901 "Platelet sensitization by LDL";"Regulation of TLR by endogenous ligand";"Retinoid metabolism and transport";"Chylomicron assembly";"Post-translational protein phosphorylation";"VLDL clearance";"Scavenging by Class A Receptors";"Scavenging by Class H Receptors";"Cargo recognition for clathrin-mediated endocytosis";"VLDL assembly";"Scavenging by Class F Receptors";"Clathrin-mediated endocytosis";"Chylomicron clearance";"LDL remodeling";"Cell surface interactions at the vascular wall";"LDL clearance";"Scavenging by Class B Receptors";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Chylomicron remodeling" maker-scaffold898-size632964-augustus-gene-2.2-mRNA-1 4 Reactome: R-HSA-350054;Reactome: R-HSA-2894862;Reactome: R-HSA-2644606;Reactome: R-HSA-2122947 "Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription" maker-scaffold7026-size105443-augustus-gene-0.3-mRNA-1 1 KEGG: 00970+6.1.1.7 "Aminoacyl-tRNA biosynthesis" maker-scaffold3210-size280932-augustus-gene-1.14-mRNA-1 22 KEGG: 00030+5.3.1.9;MetaCyc: PWY-5514;MetaCyc: PWY-5384;MetaCyc: PWY-6992;MetaCyc: PWY-3801;Reactome: R-HSA-5628897;MetaCyc: PWY-621;MetaCyc: PWY-8013;MetaCyc: PWY-7347;KEGG: 00520+5.3.1.9;KEGG: 00010+5.3.1.9;Reactome: R-HSA-70171;MetaCyc: PWY-5659;MetaCyc: PWY-6981;MetaCyc: PWY-5054;Reactome: R-HSA-70263;MetaCyc: PWY-7385;MetaCyc: PWY-6142;Reactome: R-HSA-6798695;MetaCyc: PWY-7238;MetaCyc: PWY-622;KEGG: 00500+5.3.1.9 "Pentose phosphate pathway";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Sucrose degradation IV (sucrose phosphorylase)";"1,5-anhydrofructose degradation";"Sucrose degradation II (sucrose synthase)";"TP53 Regulates Metabolic Genes";"Sucrose degradation III (sucrose invertase)";"UDP-N-acetyl-D-galactosamine biosynthesis III";"Sucrose biosynthesis III";"Amino sugar and nucleotide sugar metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis";"GDP-mannose biosynthesis";"Chitin biosynthesis";"D-sorbitol biosynthesis I";"Gluconeogenesis";"1,3-propanediol biosynthesis (engineered)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Neutrophil degranulation";"Sucrose biosynthesis II";"Starch biosynthesis";"Starch and sucrose metabolism" maker-scaffold680-size715670-augustus-gene-6.6-mRNA-1 5 Reactome: R-HSA-201722;Reactome: R-HSA-3769402;Reactome: R-HSA-8936459;Reactome: R-HSA-5617472;Reactome: R-HSA-3214841 "Formation of the beta-catenin:TCF transactivating complex";"Deactivation of the beta-catenin transactivating complex";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"PKMTs methylate histone lysines" maker-scaffold1179-size556351-augustus-gene-1.4-mRNA-1 2 MetaCyc: PWY-7851;KEGG: 00770+2.7.1.24 "Coenzyme A biosynthesis II (eukaryotic)";"Pantothenate and CoA biosynthesis" maker-scaffold1624-size465859-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-6802952 "Signaling by BRAF and RAF fusions" maker-scaffold256-size1053011-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" maker-scaffold1442-size496382-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" maker-scaffold2352-size418804-augustus-gene-3.3-mRNA-1 6 Reactome: R-HSA-450513;Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-6791226;Reactome: R-HSA-450604;Reactome: R-HSA-380994 "Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol";"KSRP (KHSRP) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress" maker-scaffold1785-size440676-augustus-gene-1.3-mRNA-1 14 Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167243;Reactome: R-HSA-167242;Reactome: R-HSA-167200;Reactome: R-HSA-674695;Reactome: R-HSA-167246;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-112382;Reactome: R-HSA-167290;Reactome: R-HSA-167287;Reactome: R-HSA-167152;Reactome: R-HSA-75955 "Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated HIV elongation arrest and recovery";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Pre-transcription Events";"Tat-mediated elongation of the HIV-1 transcript";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex";"Pausing and recovery of HIV elongation";"HIV elongation arrest and recovery";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation" maker-scaffold2065-size394383-augustus-gene-2.8-mRNA-1 6 Reactome: R-HSA-8957275;Reactome: R-HSA-5626467;Reactome: R-HSA-2173796;Reactome: R-HSA-201722;Reactome: R-HSA-381426;Reactome: R-HSA-3769402 "Post-translational protein phosphorylation";"RHO GTPases activate IQGAPs";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Formation of the beta-catenin:TCF transactivating complex";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Deactivation of the beta-catenin transactivating complex" maker-scaffold2603-size336605-augustus-gene-2.11-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" maker-scaffold1633-size589899-augustus-gene-1.3-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold4223-size297948-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" augustus-scaffold2147-size387347-processed-gene-2.1-mRNA-1 24 Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295 "Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Gap junction assembly";"Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation" maker-scaffold301-size1419381-augustus-gene-12.10-mRNA-1 5 Reactome: R-HSA-5674400;Reactome: R-HSA-6804757;Reactome: R-HSA-389357;Reactome: R-HSA-5218920;Reactome: R-HSA-1257604 "Constitutive Signaling by AKT1 E17K in Cancer";"Regulation of TP53 Degradation";"CD28 dependent PI3K/Akt signaling";"VEGFR2 mediated vascular permeability";"PIP3 activates AKT signaling" maker-scaffold1661-size458123-augustus-gene-3.6-mRNA-1 14 MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-5972;MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-7036;Reactome: R-HSA-75876 "Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs" maker-scaffold2344-size363573-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-427359 "SIRT1 negatively regulates rRNA expression" maker-scaffold1638-size463929-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-352230 "Amino acid transport across the plasma membrane" maker-scaffold6998-size105056-augustus-gene-0.4-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold1372-size512020-augustus-gene-4.5-mRNA-1 6 KEGG: 00564+2.7.1.107;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00561+2.7.1.107 "Glycerophospholipid metabolism";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerolipid metabolism" maker-scaffold10708-size47176-augustus-gene-0.2-mRNA-1 10 MetaCyc: PWY-5826;KEGG: 00460+2.3.2.2;MetaCyc: PWY-6842;MetaCyc: PWY-4061;KEGG: 00430+2.3.2.2;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-4041;MetaCyc: PWY-7112;MetaCyc: PWY-7559;MetaCyc: PWY-8001 "Hypoglycin biosynthesis";"Cyanoamino acid metabolism";"Glutathione-mediated detoxification II";"Glutathione-mediated detoxification I";"Taurine and hypotaurine metabolism";"Glutathione metabolism";"Gamma-glutamyl cycle";"4-hydroxy-2-nonenal detoxification";"Glutathione degradation (DUG pathway";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis" maker-scaffold4473-size204198-augustus-gene-1.3-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold1702-size453343-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold1259-size535445-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-6802952 "Signaling by BRAF and RAF fusions" maker-scaffold2885-size306975-augustus-gene-2.5-mRNA-1 4 Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-2644606;Reactome: R-HSA-350054 "Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Notch-HLH transcription pathway" maker-scaffold125962-size1001-augustus-gene-0.1-mRNA-1 13 Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706 "Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold2147-size387347-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-2564830 "Cytosolic iron-sulfur cluster assembly" maker-scaffold4235-size214469-augustus-gene-1.3-mRNA-1 14 MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-5972;MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-7725;MetaCyc: PWY-7035;MetaCyc: PWY-8041;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7036;Reactome: R-HSA-75876 "Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs" maker-scaffold4235-size214469-augustus-gene-1.4-mRNA-1 5 Reactome: R-HSA-75105;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-2426168 "Fatty acyl-CoA biosynthesis";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Activation of gene expression by SREBF (SREBP)" maker-scaffold1472-size489442-augustus-gene-3.5-mRNA-1 2 Reactome: R-HSA-983231;Reactome: R-HSA-383280 "Factors involved in megakaryocyte development and platelet production";"Nuclear Receptor transcription pathway" maker-scaffold3138-size283965-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold1101-size573605-augustus-gene-4.3-mRNA-1 16 Reactome: R-HSA-179409;Reactome: R-HSA-174048;Reactome: R-HSA-174154;Reactome: R-HSA-8853884;Reactome: R-HSA-174184;Reactome: R-HSA-174178;Reactome: R-HSA-2467813;Reactome: R-HSA-176412;Reactome: R-HSA-176409;Reactome: R-HSA-69017;Reactome: R-HSA-176407;Reactome: R-HSA-141430;Reactome: R-HSA-174084;Reactome: R-HSA-983168;Reactome: R-HSA-176408;Reactome: R-HSA-2559582 "APC-Cdc20 mediated degradation of Nek2A";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC/C:Cdc20 mediated degradation of Securin";"Transcriptional Regulation by VENTX";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Separation of Sister Chromatids";"Phosphorylation of the APC/C";"APC/C:Cdc20 mediated degradation of mitotic proteins";"CDK-mediated phosphorylation and removal of Cdc6";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Autodegradation of Cdh1 by Cdh1:APC/C";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of APC/C activators between G1/S and early anaphase";"Senescence-Associated Secretory Phenotype (SASP)" maker-scaffold4349-size209500-augustus-gene-1.2-mRNA-1 6 KEGG: 00053+3.1.1.17;KEGG: 00030+3.1.1.17;MetaCyc: PWY-2221;KEGG: 00930+3.1.1.17;MetaCyc: PWY-7165;MetaCyc: PWY-5530 "Ascorbate and aldarate metabolism";"Pentose phosphate pathway";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Caprolactam degradation";"L-ascorbate biosynthesis VI (engineered pathway)";"Sorbitol biosynthesis II" maker-scaffold5809-size194268-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-435368 "Zinc efflux and compartmentalization by the SLC30 family" maker-scaffold337-size964764-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" augustus-scaffold6820-size110210-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-425381 "Bicarbonate transporters" maker-scaffold298-size1000112-augustus-gene-7.3-mRNA-1 2 Reactome: R-HSA-5173214;Reactome: R-HSA-5083635 "O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)" maker-scaffold9578-size48822-augustus-gene-0.4-mRNA-1 2 KEGG: 00260+1.4.4.2;Reactome: R-HSA-6783984 "Glycine, serine and threonine metabolism";"Glycine degradation" augustus-scaffold261-size1668889-processed-gene-7.0-mRNA-1 6 Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-6811438;Reactome: R-HSA-6811434;Reactome: R-HSA-416993;Reactome: R-HSA-204005 "COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic";"COPI-dependent Golgi-to-ER retrograde traffic";"Trafficking of GluR2-containing AMPA receptors";"COPII-mediated vesicle transport" augustus-scaffold58469-size9620-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold204-size1131059-augustus-gene-10.10-mRNA-1 57 Reactome: R-HSA-5610785;Reactome: R-HSA-382556;Reactome: R-HSA-174184;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-174154;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-1169091;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-1236974;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-1234176;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-4641257;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-5607761;Reactome: R-HSA-1236978;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-69601;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-6798695;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603 "GLI3 is processed to GLI3R by the proteasome";"ABC-family proteins mediated transport";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"APC/C:Cdc20 mediated degradation of Securin";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Activation of NF-kappaB in B cells";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"ER-Phagosome pathway";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Degradation of AXIN";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Dectin-1 mediated noncanonical NF-kB signaling";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Neutrophil degranulation";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases" maker-scaffold735-size695327-augustus-gene-1.5-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis" maker-scaffold1295-size522610-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-3108214 "SUMOylation of DNA damage response and repair proteins" augustus-scaffold1101-size573605-processed-gene-1.0-mRNA-1 7 MetaCyc: PWY-5514;MetaCyc: PWY-8004;MetaCyc: PWY-6855;MetaCyc: PWY-6906;KEGG: 00030+3.1.1.31;Reactome: R-HSA-71336;KEGG: 00520+3.5.99.6 "UDP-N-acetyl-D-galactosamine biosynthesis II";"Entner-Doudoroff pathway I";"Chitin degradation I (archaea)";"Chitin derivatives degradation";"Pentose phosphate pathway";"Pentose phosphate pathway";"Amino sugar and nucleotide sugar metabolism" maker-scaffold6240-size128878-augustus-gene-0.2-mRNA-1 26 Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5663220;Reactome: R-HSA-983189;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257;Reactome: R-HSA-389960;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-389977;Reactome: R-HSA-380320;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-8955332;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-1445148;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-190840;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813 "COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases Activate Formins";"Kinesins";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion";"Formation of tubulin folding intermediates by CCT/TriC";"COPI-mediated anterograde transport";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"Post-chaperonin tubulin folding pathway";"Recruitment of NuMA to mitotic centrosomes";"Cilium Assembly";"Gap junction assembly";"Carboxyterminal post-translational modifications of tubulin";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids" augustus-scaffold589-size764226-processed-gene-1.1-mRNA-1 10 KEGG: 00604+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00531+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23;Reactome: R-HSA-2206292;KEGG: 00600+3.2.1.23;Reactome: R-HSA-2160916;Reactome: R-HSA-2024096 "Glycosphingolipid biosynthesis - ganglio series";"Xyloglucan degradation II (exoglucanase)";"Glycosaminoglycan degradation";"Neutrophil degranulation";"Other glycan degradation";"Galactose metabolism";"MPS VII - Sly syndrome";"Sphingolipid metabolism";"Hyaluronan uptake and degradation";"HS-GAG degradation" maker-scaffold4873-size184267-augustus-gene-0.4-mRNA-1 9 MetaCyc: PWY-5981;MetaCyc: PWY-6118;MetaCyc: PWY-7902;MetaCyc: PWY-5667;KEGG: 00564+1.1.1.94;Reactome: R-HSA-1483166;KEGG: 00564+1.1.1.8;MetaCyc: PWY-7411;MetaCyc: PWY-7385 "CDP-diacylglycerol biosynthesis III";"Glycerol-3-phosphate shuttle";"Glucosylglycerol biosynthesis";"CDP-diacylglycerol biosynthesis I";"Glycerophospholipid metabolism";"Synthesis of PA";"Glycerophospholipid metabolism";"Phosphatidate biosynthesis (yeast)";"1,3-propanediol biosynthesis (engineered)" maker-scaffold362-size945294-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-1474228 "Degradation of the extracellular matrix" maker-scaffold123-size1361013-augustus-gene-9.4-mRNA-1 13 Reactome: R-HSA-1660662;KEGG: 00604+3.2.1.52;MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00531+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00603+3.2.1.52;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-2022857;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2024101;Reactome: R-HSA-2160916 "Glycosphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Glycosaminoglycan degradation";"Amino sugar and nucleotide sugar metabolism";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Other glycan degradation";"Anhydromuropeptides recycling II";"Keratan sulfate degradation";"Various types of N-glycan biosynthesis";"CS/DS degradation";"Hyaluronan uptake and degradation" maker-scaffold1809-size431807-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-425986 "Sodium/Proton exchangers" maker-scaffold1797-size437762-augustus-gene-1.7-mRNA-1 2 MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4 "Cellulose degradation II (fungi)";"Starch and sucrose metabolism" maker-scaffold4810-size185071-augustus-gene-0.6-mRNA-1 8 Reactome: R-HSA-176187;Reactome: R-HSA-68867;Reactome: R-HSA-68827;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-113507;Reactome: R-HSA-68689;Reactome: R-HSA-68616 "Activation of ATR in response to replication stress";"Assembly of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"E2F-enabled inhibition of pre-replication complex formation";"CDC6 association with the ORC:origin complex";"Assembly of the ORC complex at the origin of replication" maker-scaffold3281-size274934-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold5694-size150657-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold781-size679013-augustus-gene-5.5-mRNA-1 14 MetaCyc: PWY-8052;Reactome: R-HSA-112043;KEGG: 00562+3.1.4.11;Reactome: R-HSA-500657;Reactome: R-HSA-4086398;MetaCyc: PWY-7039;MetaCyc: PWY-6367;Reactome: R-HSA-418217;Reactome: R-HSA-416476;Reactome: R-HSA-399997;MetaCyc: PWY-6351;Reactome: R-HSA-434316;KEGG: 04070+3.1.4.11;Reactome: R-HSA-1855204 "2-arachidonoylglycerol biosynthesis";"PLC beta mediated events";"Inositol phosphate metabolism";"Presynaptic function of Kainate receptors";"Ca2+ pathway";"Phosphatidate metabolism, as a signaling molecule";"D-myo-inositol-5-phosphate metabolism";"G beta:gamma signalling through PLC beta";"G alpha (q) signalling events";"Acetylcholine regulates insulin secretion";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Fatty Acids bound to GPR40 (FFAR1) regulate insulin secretion";"Phosphatidylinositol signaling system";"Synthesis of IP3 and IP4 in the cytosol" maker-scaffold1837-size432367-augustus-gene-3.4-mRNA-1 4 MetaCyc: PWY-6517;MetaCyc: PWY-6906;KEGG: 00520+2.7.1.59;Reactome: R-HSA-446210 "N-acetylglucosamine degradation II";"Chitin derivatives degradation";"Amino sugar and nucleotide sugar metabolism";"Synthesis of UDP-N-acetyl-glucosamine" maker-scaffold156-size1384439-augustus-gene-10.5-mRNA-1 4 Reactome: R-HSA-73817;KEGG: 00983+6.3.5.2;KEGG: 00230+6.3.5.2;MetaCyc: PWY-7221 "Purine ribonucleoside monophosphate biosynthesis";"Drug metabolism - other enzymes";"Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis" maker-scaffold704-size706041-augustus-gene-6.4-mRNA-1 17 KEGG: 00230+2.4.2.1;MetaCyc: PWY-7179;MetaCyc: PWY-6627;KEGG: 00760+2.4.2.1;MetaCyc: PWY-7179-1;MetaCyc: PWY-6644;MetaCyc: PWY-5532;MetaCyc: PWY-4202;Reactome: R-HSA-74217;Reactome: R-HSA-74259;MetaCyc: PWY-6620;KEGG: 00240+2.4.2.1;MetaCyc: PWY-6609;Reactome: R-HSA-6798695;MetaCyc: PWY-5695;MetaCyc: PWY-6608;MetaCyc: PWY-6611 "Purine metabolism";"Purine deoxyribonucleosides degradation I";"Salinosporamide A biosynthesis";"Nicotinate and nicotinamide metabolism";"Purine deoxyribonucleosides degradation II";"Fluoroacetate and fluorothreonine biosynthesis";"Nucleoside and nucleotide degradation (archaea)";"Arsenate detoxification I (mammalian)";"Purine salvage";"Purine catabolism";"Guanine and guanosine salvage";"Pyrimidine metabolism";"Adenine and adenosine salvage III";"Neutrophil degranulation";"Inosine 5'-phosphate degradation";"Guanosine nucleotides degradation III";"Adenine and adenosine salvage V" maker-scaffold138-size1309700-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold5753-size147418-augustus-gene-0.8-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold425-size886407-augustus-gene-7.5-mRNA-1 4 Reactome: R-HSA-73856;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-159236 "RNA Polymerase II Transcription Termination";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript" maker-scaffold219-size1108139-augustus-gene-7.1-mRNA-1 2 Reactome: R-HSA-110320;Reactome: R-HSA-983168 "Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold1039-size940658-augustus-gene-2.5-mRNA-1 6 Reactome: R-HSA-176187;Reactome: R-HSA-176974;Reactome: R-HSA-68867;Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-69052 "Activation of ATR in response to replication stress";"Unwinding of DNA";"Assembly of the pre-replicative complex";"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Switching of origins to a post-replicative state" maker-scaffold227-size1088326-augustus-gene-3.5-mRNA-1 6 KEGG: 00053+3.1.1.17;KEGG: 00030+3.1.1.17;MetaCyc: PWY-2221;KEGG: 00930+3.1.1.17;MetaCyc: PWY-5530;MetaCyc: PWY-7165 "Ascorbate and aldarate metabolism";"Pentose phosphate pathway";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Caprolactam degradation";"Sorbitol biosynthesis II";"L-ascorbate biosynthesis VI (engineered pathway)" maker-scaffold17-size2088793-augustus-gene-14.1-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold2201-size380283-augustus-gene-2.8-mRNA-1 10 Reactome: R-HSA-4719377;Reactome: R-HSA-913709;MetaCyc: PWY-7661;MetaCyc: PWY-7979;MetaCyc: PWY-7921;Reactome: R-HSA-4717374;KEGG: 00510+2.4.1.83;Reactome: R-HSA-162699;MetaCyc: PWY-7922;Reactome: R-HSA-4719360 "Defective DPM2 causes DPM2-CDG (CDG-1u)";"O-linked glycosylation of mucins";"Protein N-glycosylation (Haloferax volcanii)";"Protein O-mannosylation III (mammals, core M3)";"Protein O-mannosylation I (yeast)";"Defective DPM1 causes DPM1-CDG (CDG-1e)";"N-Glycan biosynthesis";"Synthesis of dolichyl-phosphate mannose";"Protein O-mannosylation II (mammals, core M1 and core M2)";"Defective DPM3 causes DPM3-CDG (CDG-1o)" maker-scaffold90-size1469227-augustus-gene-13.11-mRNA-1 1 Reactome: R-HSA-112126 "ALKBH3 mediated reversal of alkylation damage" maker-scaffold18709-size28897-augustus-gene-0.2-mRNA-1 6 KEGG: 00630+1.11.1.6;KEGG: 00380+1.11.1.6;Reactome: R-HSA-3299685;Reactome: R-HSA-9615017;Reactome: R-HSA-9033241;Reactome: R-HSA-6798695 "Glyoxylate and dicarboxylate metabolism";"Tryptophan metabolism";"Detoxification of Reactive Oxygen Species";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Peroxisomal protein import";"Neutrophil degranulation" maker-scaffold2581-size686377-augustus-gene-1.6-mRNA-1 3 Reactome: R-HSA-1445148;Reactome: R-HSA-5620916;Reactome: R-HSA-264876 "Translocation of SLC2A4 (GLUT4) to the plasma membrane";"VxPx cargo-targeting to cilium";"Insulin processing" maker-scaffold75-size1537034-augustus-gene-8.6-mRNA-1 1 Reactome: R-HSA-3299685 "Detoxification of Reactive Oxygen Species" maker-scaffold5323-size164559-augustus-gene-0.8-mRNA-1 1 Reactome: R-HSA-2022377 "Metabolism of Angiotensinogen to Angiotensins" maker-scaffold4454-size204149-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold1179-size556351-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" augustus-scaffold4666-size193595-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-197264 "Nicotinamide salvaging" maker-scaffold8-size2944011-augustus-gene-28.1-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold10814-size35179-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold2455-size351638-augustus-gene-1.2-mRNA-1 6 MetaCyc: PWY-6807;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23 "Xyloglucan degradation II (exoglucanase)";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Glycosaminoglycan degradation";"Other glycan degradation";"Galactose metabolism" maker-scaffold1150-size560552-augustus-gene-3.1-mRNA-1 7 MetaCyc: PWY-6605;MetaCyc: PWY-7805;Reactome: R-HSA-74217;MetaCyc: PWY-7807;MetaCyc: PWY-6610;Reactome: R-HSA-6798695;KEGG: 00230+2.4.2.7 "Adenine and adenosine salvage II";"(aminomethyl)phosphonate degradation";"Purine salvage";"Glyphosate degradation III";"Adenine salvage";"Neutrophil degranulation";"Purine metabolism" augustus-scaffold9730-size47467-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold27-size1854422-augustus-gene-17.3-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold1481-size481709-augustus-gene-3.5-mRNA-1 5 Reactome: R-HSA-389357;Reactome: R-HSA-5674400;Reactome: R-HSA-6804757;Reactome: R-HSA-5218920;Reactome: R-HSA-1257604 "CD28 dependent PI3K/Akt signaling";"Constitutive Signaling by AKT1 E17K in Cancer";"Regulation of TP53 Degradation";"VEGFR2 mediated vascular permeability";"PIP3 activates AKT signaling" maker-scaffold1798-size436209-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-209968 "Thyroxine biosynthesis" maker-scaffold2523-size351658-augustus-gene-1.1-mRNA-1 27 Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-4551638;Reactome: R-HSA-5619107;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-159227;Reactome: R-HSA-159230;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-4085377;Reactome: R-HSA-168325 "Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"SUMOylation of chromatin organization proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"HCMV Early Events";"Transport of the SLBP independent Mature mRNA";"Transport of the SLBP Dependant Mature mRNA";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of SUMOylation proteins";"Viral Messenger RNA Synthesis" maker-scaffold241-size1969003-augustus-gene-15.3-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold2270-size370992-augustus-gene-2.6-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis" maker-scaffold1140-size601982-augustus-gene-1.5-mRNA-1 11 Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-6804756;Reactome: R-HSA-5693579;Reactome: R-HSA-5358565;Reactome: R-HSA-5693616;Reactome: R-HSA-5685942;Reactome: R-HSA-5358606;Reactome: R-HSA-5693568;Reactome: R-HSA-69473;Reactome: R-HSA-5693607 "Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"Regulation of TP53 Activity through Phosphorylation";"Homologous DNA Pairing and Strand Exchange";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Presynaptic phase of homologous DNA pairing and strand exchange";"HDR through Homologous Recombination (HRR)";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends" maker-scaffold52-size1685179-augustus-gene-15.2-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold5599-size153902-augustus-gene-0.3-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" maker-scaffold4345-size209776-augustus-gene-1.5-mRNA-1 6 Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-6798695;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288 "Transferrin endocytosis and recycling";"Insulin receptor recycling";"Neutrophil degranulation";"Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1" maker-scaffold574-size1811919-augustus-gene-9.5-mRNA-1 1 Reactome: R-HSA-5663220 "RHO GTPases Activate Formins" maker-scaffold8329-size72667-augustus-gene-0.6-mRNA-1 3 Reactome: R-HSA-5389840;Reactome: R-HSA-5368286;Reactome: R-HSA-5419276 "Mitochondrial translation elongation";"Mitochondrial translation initiation";"Mitochondrial translation termination" maker-scaffold3509-size259622-augustus-gene-1.6-mRNA-1 2 Reactome: R-HSA-74217;KEGG: 00230+1.7.1.7 "Purine salvage";"Purine metabolism" maker-scaffold5977-size138952-augustus-gene-0.2-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-156827 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold1478-size490584-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-5662702 "Melanin biosynthesis" augustus-scaffold365-size940238-processed-gene-7.2-mRNA-1 2 Reactome: R-HSA-380270;Reactome: R-HSA-380320 "Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes" maker-scaffold1503-size492733-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-1483101 "Synthesis of PS" maker-scaffold288-size1017370-augustus-gene-9.5-mRNA-1 2 KEGG: 00280+1.3.8.4;Reactome: R-HSA-70895 "Valine, leucine and isoleucine degradation";"Branched-chain amino acid catabolism" maker-scaffold8440-size70913-augustus-gene-0.3-mRNA-1 6 Reactome: R-HSA-450513;Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-450604;Reactome: R-HSA-6791226;Reactome: R-HSA-380994 "Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"KSRP (KHSRP) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol";"ATF4 activates genes in response to endoplasmic reticulum stress" maker-scaffold820-size672882-augustus-gene-2.1-mRNA-1 13 Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-2408557;Reactome: R-HSA-975956 "Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" maker-scaffold2378-size361371-augustus-gene-0.4-mRNA-1 10 MetaCyc: PWY-8001;MetaCyc: PWY-7112;MetaCyc: PWY-7559;MetaCyc: PWY-4061;MetaCyc: PWY-6842;KEGG: 00430+2.3.2.2;MetaCyc: PWY-4041;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-5826;KEGG: 00460+2.3.2.2 "Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"4-hydroxy-2-nonenal detoxification";"Glutathione degradation (DUG pathway";"Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II";"Taurine and hypotaurine metabolism";"Gamma-glutamyl cycle";"Glutathione metabolism";"Hypoglycin biosynthesis";"Cyanoamino acid metabolism" maker-scaffold561-size786733-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-191859 "snRNP Assembly" maker-scaffold4432-size209534-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-9033241 "Peroxisomal protein import" maker-scaffold25350-size8991-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-70221 "Glycogen breakdown (glycogenolysis)" maker-scaffold5735-size147614-augustus-gene-0.2-mRNA-1 7 Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76066;Reactome: R-HSA-76071;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780 "RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation" maker-scaffold2561-size340645-augustus-gene-2.8-mRNA-1 15 Reactome: R-HSA-1227986;Reactome: R-HSA-9665249;Reactome: R-HSA-9634285;Reactome: R-HSA-5637810;Reactome: R-HSA-9665251;Reactome: R-HSA-9665233;Reactome: R-HSA-9665250;Reactome: R-HSA-9664565;Reactome: R-HSA-9665244;Reactome: R-HSA-8863795;Reactome: R-HSA-9665245;Reactome: R-HSA-9652282;Reactome: R-HSA-1236382;Reactome: R-HSA-9665247;Reactome: R-HSA-9665246 "Signaling by ERBB2";"Resistance of ERBB2 KD mutants to afatinib";"Constitutive Signaling by Overexpressed ERBB2";"Constitutive Signaling by EGFRvIII";"Resistance of ERBB2 KD mutants to lapatinib";"Resistance of ERBB2 KD mutants to trastuzumab";"Resistance of ERBB2 KD mutants to AEE788";"Signaling by ERBB2 KD Mutants";"Resistance of ERBB2 KD mutants to sapitinib";"Downregulation of ERBB2 signaling";"Resistance of ERBB2 KD mutants to tesevatinib";"Drug-mediated inhibition of ERBB2 signaling";"Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants";"Resistance of ERBB2 KD mutants to osimertinib";"Resistance of ERBB2 KD mutants to neratinib" maker-scaffold1323-size528941-augustus-gene-4.11-mRNA-1 2 MetaCyc: PWY-6281;KEGG: 00970+6.1.1.11 "L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Aminoacyl-tRNA biosynthesis" maker-scaffold3884-size236876-augustus-gene-1.10-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold3745-size241543-augustus-gene-1.2-mRNA-1 10 Reactome: R-HSA-2206292;KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00531+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00604+3.2.1.23;Reactome: R-HSA-2024096;Reactome: R-HSA-2160916;KEGG: 00600+3.2.1.23 "MPS VII - Sly syndrome";"Galactose metabolism";"Other glycan degradation";"Neutrophil degranulation";"Glycosaminoglycan degradation";"Xyloglucan degradation II (exoglucanase)";"Glycosphingolipid biosynthesis - ganglio series";"HS-GAG degradation";"Hyaluronan uptake and degradation";"Sphingolipid metabolism" maker-scaffold3487-size259946-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-5358565;Reactome: R-HSA-5632968;Reactome: R-HSA-5632928 "Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Defective Mismatch Repair Associated With MSH6";"Defective Mismatch Repair Associated With MSH2" maker-scaffold3602-size412592-augustus-gene-1.3-mRNA-1 8 KEGG: 00521+5.5.1.4;MetaCyc: PWY-6664;MetaCyc: PWY-4661;KEGG: 00562+5.5.1.4;Reactome: R-HSA-1855183;MetaCyc: PWY-6372;MetaCyc: PWY-6580;MetaCyc: PWY-2301 "Streptomycin biosynthesis";"Di-myo-inositol phosphate biosynthesis";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)";"Inositol phosphate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol";"1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)";"Phosphatidylinositol biosynthesis I (bacteria)";"Myo-inositol biosynthesis" maker-scaffold114-size1392915-augustus-gene-6.2-mRNA-1 56 Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5689603;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-211733;Reactome: R-HSA-5678895;Reactome: R-HSA-1236978;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-4641257;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-5676590;Reactome: R-HSA-1234176;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-75815;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-1169091;Reactome: R-HSA-5689880;Reactome: R-HSA-8948751;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-174113;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-2871837;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-350562 "CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"UCH proteinases";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Defective CFTR causes cystic fibrosis";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of AXIN";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"NIK-->noncanonical NF-kB signaling";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Hedgehog 'on' state";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Ubiquitin-dependent degradation of Cyclin D";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Activation of NF-kappaB in B cells";"Ub-specific processing proteases";"Regulation of PTEN stability and activity";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF-beta-TrCP mediated degradation of Emi1";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"FCERI mediated NF-kB activation";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)" augustus-scaffold647-size737060-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-6804756;Reactome: R-HSA-8854518 "Regulation of TP53 Activity through Phosphorylation";"AURKA Activation by TPX2" maker-scaffold6429-size130355-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-203927;Reactome: R-HSA-426486 "MicroRNA (miRNA) biogenesis";"Small interfering RNA (siRNA) biogenesis" maker-scaffold3573-size258212-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-9603798;Reactome: R-HSA-1369062 "Class I peroxisomal membrane protein import";"ABC transporters in lipid homeostasis" maker-scaffold896-size634866-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-480985 "Synthesis of dolichyl-phosphate-glucose" maker-scaffold4155-size219820-augustus-gene-1.3-mRNA-1 4 Reactome: R-HSA-400511;Reactome: R-HSA-1799339;Reactome: R-HSA-422085;Reactome: R-HSA-381771 "Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)";"SRP-dependent cotranslational protein targeting to membrane";"Synthesis, secretion, and deacylation of Ghrelin";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)" maker-scaffold1891-size422512-augustus-gene-3.7-mRNA-1 12 KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5537;MetaCyc: PWY-5392;MetaCyc: PWY-7384;KEGG: 00720+6.2.1.5;MetaCyc: PWY-6728;MetaCyc: PWY-5538;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00660+6.2.1.5 "Citrate cycle (TCA cycle)";"Propanoate metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate V";"Reductive TCA cycle II";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Pyruvate fermentation to acetate VI";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"C5-Branched dibasic acid metabolism" maker-scaffold15530-size15850-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-5576886 "Phase 4 - resting membrane potential" maker-scaffold629-size878374-augustus-gene-1.7-mRNA-1 3 KEGG: 00730+3.1.3.1;KEGG: 00790+3.1.3.1;MetaCyc: PWY-5491 "Thiamine metabolism";"Folate biosynthesis";"Diethylphosphate degradation" maker-scaffold3671-size249477-augustus-gene-0.3-mRNA-1 1 KEGG: 00970+6.3.5.7 "Aminoacyl-tRNA biosynthesis" maker-scaffold330-size971189-augustus-gene-8.10-mRNA-1 1 Reactome: R-HSA-4085001 "Sialic acid metabolism" maker-scaffold107-size1405405-augustus-gene-10.1-mRNA-1 7 KEGG: 00270+2.5.1.22;KEGG: 00480+2.5.1.22;KEGG: 00480+2.5.1.16;KEGG: 00330+2.5.1.22;Reactome: R-HSA-351202;KEGG: 00330+2.5.1.16;KEGG: 00270+2.5.1.16 "Cysteine and methionine metabolism";"Glutathione metabolism";"Glutathione metabolism";"Arginine and proline metabolism";"Metabolism of polyamines";"Arginine and proline metabolism";"Cysteine and methionine metabolism" maker-scaffold439-size877920-augustus-gene-7.9-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold4332-size208308-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-1362409 "Mitochondrial iron-sulfur cluster biogenesis" maker-scaffold1372-size512020-augustus-gene-4.6-mRNA-1 6 MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00561+2.7.1.107;KEGG: 00564+2.7.1.107;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107 "Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system" maker-scaffold2180-size383332-augustus-gene-2.4-mRNA-1 2 KEGG: 00520+5.4.2.10;MetaCyc: PWY-6749 "Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I" maker-scaffold3616-size251744-augustus-gene-1.1-mRNA-1 7 MetaCyc: PWY-8052;MetaCyc: PWY-6351;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6367;MetaCyc: PWY-7039;KEGG: 04070+3.1.4.11;Reactome: R-HSA-1855204 "2-arachidonoylglycerol biosynthesis";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Inositol phosphate metabolism";"D-myo-inositol-5-phosphate metabolism";"Phosphatidate metabolism, as a signaling molecule";"Phosphatidylinositol signaling system";"Synthesis of IP3 and IP4 in the cytosol" maker-scaffold6564-size118254-augustus-gene-0.6-mRNA-1 3 Reactome: R-HSA-193681;Reactome: R-HSA-1660662;Reactome: R-HSA-5626978 "Ceramide signalling";"Glycosphingolipid metabolism";"TNFR1-mediated ceramide production" augustus-scaffold142663-size878-processed-gene-0.0-mRNA-1 3 Reactome: R-HSA-499943;KEGG: 00240+3.5.4.12;MetaCyc: PWY-7210 "Interconversion of nucleotide di- and triphosphates";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP" augustus-scaffold1408-size505841-processed-gene-4.0-mRNA-1 4 Reactome: R-HSA-8856828;Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-3928662 "Clathrin-mediated endocytosis";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"EPHB-mediated forward signaling" maker-scaffold456-size867595-augustus-gene-6.2-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold111-size1895004-augustus-gene-17.5-mRNA-1 1 Reactome: R-HSA-5620924 "Intraflagellar transport" maker-scaffold2575-size333099-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" augustus-scaffold2747-size322560-processed-gene-0.0-mRNA-1 2 KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1 "Pentose phosphate pathway";"Purine metabolism" maker-scaffold3726-size246152-augustus-gene-1.4-mRNA-1 5 Reactome: R-HSA-77595;Reactome: R-HSA-73856;Reactome: R-HSA-6784531;Reactome: R-HSA-72187;Reactome: R-HSA-72163 "Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination";"tRNA processing in the nucleus";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway" maker-scaffold156-size1384439-augustus-gene-9.3-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold322-size1034455-augustus-gene-5.3-mRNA-1 3 KEGG: 00511+3.2.1.51;Reactome: R-HSA-6798695;MetaCyc: PWY-6807 "Other glycan degradation";"Neutrophil degranulation";"Xyloglucan degradation II (exoglucanase)" maker-scaffold906-size632830-augustus-gene-1.4-mRNA-1 5 Reactome: R-HSA-201681;Reactome: R-HSA-5545619;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-4641257 "TCF dependent signaling in response to WNT";"XAV939 inhibits tankyrase, stabilizing AXIN";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"Degradation of AXIN" maker-scaffold383-size1216599-augustus-gene-8.16-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-3108214 "Protein ubiquitination";"SUMOylation of DNA damage response and repair proteins" augustus-scaffold4880-size183423-processed-gene-0.4-mRNA-1 7 KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05163+2.7.11.1 "Thermogenesis";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human papillomavirus infection";"Human cytomegalovirus infection" maker-scaffold4595-size199403-augustus-gene-0.5-mRNA-1 6 Reactome: R-HSA-429958;Reactome: R-HSA-450385;Reactome: R-HSA-450513;Reactome: R-HSA-450604;Reactome: R-HSA-6791226;Reactome: R-HSA-380994 "mRNA decay by 3' to 5' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"KSRP (KHSRP) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol";"ATF4 activates genes in response to endoplasmic reticulum stress" maker-scaffold5224-size175080-augustus-gene-0.2-mRNA-1 5 Reactome: R-HSA-9029558;Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-2426168;Reactome: R-HSA-75105 "NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis" maker-scaffold960-size992493-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-2173788;Reactome: R-HSA-5689603 "Downregulation of TGF-beta receptor signaling";"UCH proteinases" augustus-scaffold6180-size131353-processed-gene-0.1-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold4735-size340991-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" augustus-scaffold44134-size13015-processed-gene-0.1-mRNA-1 26 Reactome: R-HSA-5651801;Reactome: R-HSA-6782135;Reactome: R-HSA-4615885;Reactome: R-HSA-5655862;Reactome: R-HSA-174411;Reactome: R-HSA-110320;Reactome: R-HSA-1362277;Reactome: R-HSA-5358565;Reactome: R-HSA-6782210;Reactome: R-HSA-8866654;Reactome: R-HSA-69183;Reactome: R-HSA-69166;Reactome: R-HSA-110312;Reactome: R-HSA-174417;Reactome: R-HSA-5696400;Reactome: R-HSA-6804114;Reactome: R-HSA-5656121;Reactome: R-HSA-174414;Reactome: R-HSA-5696397;Reactome: R-HSA-5685942;Reactome: R-HSA-5656169;Reactome: R-HSA-5358606;Reactome: R-HSA-110314;Reactome: R-HSA-174437;Reactome: R-HSA-69205;Reactome: R-HSA-69091 "PCNA-Dependent Long Patch Base Excision Repair";"Dual incision in TC-NER";"SUMOylation of DNA replication proteins";"Translesion synthesis by POLK";"Polymerase switching on the C-strand of the telomere";"Translesion Synthesis by POLH";"Transcription of E2F targets under negative control by DREAM complex";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"E3 ubiquitin ligases ubiquitinate target proteins";"Processive synthesis on the lagging strand";"Removal of the Flap Intermediate";"Translesion synthesis by REV1";"Telomere C-strand (Lagging Strand) Synthesis";"Dual Incision in GG-NER";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Translesion synthesis by POLI";"Processive synthesis on the C-strand of the telomere";"Gap-filling DNA repair synthesis and ligation in GG-NER";"HDR through Homologous Recombination (HRR)";"Termination of translesion DNA synthesis";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Recognition of DNA damage by PCNA-containing replication complex";"Removal of the Flap Intermediate from the C-strand";"G1/S-Specific Transcription";"Polymerase switching" maker-scaffold241-size1969003-augustus-gene-17.3-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" augustus-scaffold27857-size8393-processed-gene-0.0-mRNA-1 7 MetaCyc: PWY-7456;MetaCyc: PWY-7586;KEGG: 00051+5.4.2.8;MetaCyc: PWY-882;KEGG: 00520+5.4.2.8;MetaCyc: PWY-5659;Reactome: R-HSA-446205 "Beta-(1,4)-mannan degradation";"Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation";"Fructose and mannose metabolism";"L-ascorbate biosynthesis I (L-galactose pathway)";"Amino sugar and nucleotide sugar metabolism";"GDP-mannose biosynthesis";"Synthesis of GDP-mannose" maker-scaffold2093-size481608-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold2271-size375816-augustus-gene-2.8-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold2043-size738350-augustus-gene-2.4-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" augustus-scaffold4806-size283113-processed-gene-1.1-mRNA-1 24 Reactome: R-HSA-983189;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-2132295;Reactome: R-HSA-9646399;Reactome: R-HSA-9609736;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-8852276;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-9609690;Reactome: R-HSA-6807878;Reactome: R-HSA-6811436;Reactome: R-HSA-380320;Reactome: R-HSA-8955332;Reactome: R-HSA-190861;Reactome: R-HSA-5617833 "Kinesins";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"MHC class II antigen presentation";"Aggrephagy";"Assembly and cell surface presentation of NMDA receptors";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"HCMV Early Events";"COPI-mediated anterograde transport";"COPI-independent Golgi-to-ER retrograde traffic";"Recruitment of NuMA to mitotic centrosomes";"Carboxyterminal post-translational modifications of tubulin";"Gap junction assembly";"Cilium Assembly" maker-scaffold179-size1237188-augustus-gene-11.2-mRNA-1 12 KEGG: 00680+4.1.2.13;MetaCyc: PWY-1042;KEGG: 00051+4.1.2.13;MetaCyc: PWY-5484;KEGG: 00710+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00030+4.1.2.13;KEGG: 00010+4.1.2.13;MetaCyc: PWY-7385;MetaCyc: PWY-6142;MetaCyc: PWY-1861;Reactome: R-HSA-70171 "Methane metabolism";"Glycolysis IV (plant cytosol)";"Fructose and mannose metabolism";"Glycolysis II (from fructose 6-phosphate)";"Carbon fixation in photosynthetic organisms";"Gluconeogenesis";"Pentose phosphate pathway";"Glycolysis / Gluconeogenesis";"1,3-propanediol biosynthesis (engineered)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Glycolysis" augustus-scaffold1329-size522867-processed-gene-4.1-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold2378-size361371-augustus-gene-2.10-mRNA-1 10 MetaCyc: PWY-5826;KEGG: 00460+2.3.2.2;KEGG: 00430+2.3.2.2;MetaCyc: PWY-6842;MetaCyc: PWY-4061;MetaCyc: PWY-4041;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-7559;MetaCyc: PWY-7112;MetaCyc: PWY-8001 "Hypoglycin biosynthesis";"Cyanoamino acid metabolism";"Taurine and hypotaurine metabolism";"Glutathione-mediated detoxification II";"Glutathione-mediated detoxification I";"Gamma-glutamyl cycle";"Glutathione metabolism";"Glutathione degradation (DUG pathway";"4-hydroxy-2-nonenal detoxification";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis" maker-scaffold6226-size129405-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-110320;Reactome: R-HSA-983168 "Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold9-size2840252-augustus-gene-1.1-mRNA-1 8 MetaCyc: PWY-4984;Reactome: R-HSA-70635;MetaCyc: PWY-7400;KEGG: 00250+4.3.2.1;KEGG: 00220+4.3.2.1;MetaCyc: PWY-4983;MetaCyc: PWY-5154;MetaCyc: PWY-5 "Urea cycle";"Urea cycle";"L-arginine biosynthesis IV (archaebacteria)";"Alanine, aspartate and glutamate metabolism";"Arginine biosynthesis";"Nitric oxide biosynthesis II (mammals)";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"Canavanine biosynthesis" maker-scaffold4035-size227647-augustus-gene-1.3-mRNA-1 3 Reactome: R-HSA-72165;Reactome: R-HSA-430039;Reactome: R-HSA-72163 "mRNA Splicing - Minor Pathway";"mRNA decay by 5' to 3' exoribonuclease";"mRNA Splicing - Major Pathway" maker-scaffold1500-size481877-augustus-gene-1.5-mRNA-1 3 Reactome: R-HSA-8964208;KEGG: 00250+3.5.1.1;KEGG: 00460+3.5.1.1 "Phenylalanine metabolism";"Alanine, aspartate and glutamate metabolism";"Cyanoamino acid metabolism" maker-scaffold2085-size396970-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-2132295 "MHC class II antigen presentation" augustus-scaffold5229-size167247-processed-gene-0.1-mRNA-1 10 MetaCyc: PWY-5892;MetaCyc: PWY-5839;MetaCyc: PWY-5895;MetaCyc: PWY-7996;Reactome: R-HSA-2142789;MetaCyc: PWY-5890;MetaCyc: PWY-5891;KEGG: 00130+2.1.1.163;MetaCyc: PWY-5849;MetaCyc: PWY-5844 "Menaquinol-12 biosynthesis";"Menaquinol-7 biosynthesis";"Menaquinol-13 biosynthesis";"Menaquinol-4 biosynthesis I";"Ubiquinol biosynthesis";"Menaquinol-10 biosynthesis";"Menaquinol-11 biosynthesis";"Ubiquinone and other terpenoid-quinone biosynthesis";"Menaquinol-6 biosynthesis";"Menaquinol-9 biosynthesis" maker-scaffold780-size783175-augustus-gene-5.2-mRNA-1 13 KEGG: 00531+3.2.1.52;KEGG: 00604+3.2.1.52;Reactome: R-HSA-1660662;MetaCyc: PWY-6902;MetaCyc: PWY-7822;Reactome: R-HSA-2160916;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2022857;Reactome: R-HSA-2024101;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7883;KEGG: 00520+3.2.1.52;KEGG: 00603+3.2.1.52 "Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid metabolism";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Hyaluronan uptake and degradation";"Various types of N-glycan biosynthesis";"Keratan sulfate degradation";"CS/DS degradation";"Other glycan degradation";"Anhydromuropeptides recycling II";"Amino sugar and nucleotide sugar metabolism";"Glycosphingolipid biosynthesis - globo and isoglobo series" maker-scaffold1439-size498697-augustus-gene-3.7-mRNA-1 2 Reactome: R-HSA-5173214;Reactome: R-HSA-5083635 "O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)" maker-scaffold577-size1394770-augustus-gene-11.2-mRNA-1 1 Reactome: R-HSA-5683826 "Surfactant metabolism" maker-scaffold258-size1049586-augustus-gene-7.2-mRNA-1 4 Reactome: R-HSA-5576893;Reactome: R-HSA-112308;Reactome: R-HSA-5576892;Reactome: R-HSA-419037 "Phase 2 - plateau phase";"Presynaptic depolarization and calcium channel opening";"Phase 0 - rapid depolarisation";"NCAM1 interactions" augustus-scaffold7644-size92365-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" augustus-scaffold13251-size27313-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-430039 "mRNA decay by 5' to 3' exoribonuclease" maker-scaffold2478-size471058-augustus-gene-1.4-mRNA-1 2 MetaCyc: PWY-6854;Reactome: R-HSA-3299685 "Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species" maker-scaffold2918-size304612-augustus-gene-2.3-mRNA-1 3 Reactome: R-HSA-212676;Reactome: R-HSA-6794361;Reactome: R-HSA-9609736 "Dopamine Neurotransmitter Release Cycle";"Neurexins and neuroligins";"Assembly and cell surface presentation of NMDA receptors" maker-scaffold1703-size450993-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-1237044 "Erythrocytes take up carbon dioxide and release oxygen" maker-scaffold6635-size115840-augustus-gene-0.3-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" augustus-scaffold2794-size323726-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-9610379;Reactome: R-HSA-917729 "HCMV Late Events";"Endosomal Sorting Complex Required For Transport (ESCRT)" maker-scaffold6506-size117975-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold1003-size650854-augustus-gene-5.3-mRNA-1 1 KEGG: 04070+2.7.11.13 "Phosphatidylinositol signaling system" maker-scaffold2379-size357639-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-171319;Reactome: R-HSA-6790901 "Telomere Extension By Telomerase";"rRNA modification in the nucleus and cytosol" maker-scaffold4360-size211206-augustus-gene-1.2-mRNA-1 5 Reactome: R-HSA-1362409;Reactome: R-HSA-196108;Reactome: R-HSA-2395516;Reactome: R-HSA-211976;Reactome: R-HSA-5579026 "Mitochondrial iron-sulfur cluster biogenesis";"Pregnenolone biosynthesis";"Electron transport from NADPH to Ferredoxin";"Endogenous sterols";"Defective CYP11A1 causes Adrenal insufficiency, congenital, with 46,XY sex reversal (AICSR)" augustus-scaffold8987-size61684-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold9374-size52731-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold137-size1323436-augustus-gene-7.4-mRNA-1 1 Reactome: R-HSA-2024096 "HS-GAG degradation" maker-scaffold2576-size340169-augustus-gene-2.13-mRNA-1 12 Reactome: R-HSA-9609690;Reactome: R-HSA-6807878;Reactome: R-HSA-6811436;Reactome: R-HSA-3371497;Reactome: R-HSA-141444;Reactome: R-HSA-2132295;Reactome: R-HSA-9646399;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813 "HCMV Early Events";"COPI-mediated anterograde transport";"COPI-independent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"MHC class II antigen presentation";"Aggrephagy";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids" maker-scaffold1491-size484907-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-2129379 "Molecules associated with elastic fibres" maker-scaffold1327-size663912-augustus-gene-2.7-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold4437-size204471-processed-gene-1.2-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-5628897 "Respiratory electron transport";"TP53 Regulates Metabolic Genes" maker-scaffold472-size998402-augustus-gene-6.3-mRNA-1 1 Reactome: R-HSA-2514853 "Condensation of Prometaphase Chromosomes" maker-scaffold35-size1795137-augustus-gene-14.2-mRNA-1 2 Reactome: R-HSA-5576893;Reactome: R-HSA-5576892 "Phase 2 - plateau phase";"Phase 0 - rapid depolarisation" maker-scaffold1500-size481877-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold1764-size441777-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-5610787 "Hedgehog 'off' state" maker-scaffold1088-size573517-augustus-gene-4.13-mRNA-1 8 KEGG: 00190+7.1.2.2;MetaCyc: PWY-7980;Reactome: R-HSA-9639288;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-77387;KEGG: 00195+7.1.2.2;Reactome: R-HSA-917977 "Oxidative phosphorylation";"ATP biosynthesis";"Amino acids regulate mTORC1";"Ion channel transport";"ROS and RNS production in phagocytes";"Insulin receptor recycling";"Photosynthesis";"Transferrin endocytosis and recycling" maker-scaffold53-size1679291-augustus-gene-6.2-mRNA-1 5 Reactome: R-HSA-3928662;Reactome: R-HSA-5663213;Reactome: R-HSA-2029482;Reactome: R-HSA-6798695;Reactome: R-HSA-8856828 "EPHB-mediated forward signaling";"RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation";"Neutrophil degranulation";"Clathrin-mediated endocytosis" maker-scaffold548-size808714-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-176974 "Unwinding of DNA" maker-scaffold8403-size72372-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold721-size701655-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-432047 "Passive transport by Aquaporins" augustus-scaffold177-size1441385-processed-gene-4.0-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" maker-scaffold11612-size26833-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-9033241 "Peroxisomal protein import" maker-scaffold5305-size165435-augustus-gene-0.7-mRNA-1 4 Reactome: R-HSA-422085;Reactome: R-HSA-381771;Reactome: R-HSA-400511;Reactome: R-HSA-1799339 "Synthesis, secretion, and deacylation of Ghrelin";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)";"SRP-dependent cotranslational protein targeting to membrane" maker-scaffold2271-size375816-augustus-gene-2.7-mRNA-1 2 Reactome: R-HSA-8936459;Reactome: R-HSA-3214841 "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"PKMTs methylate histone lysines" maker-scaffold5818-size144305-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-9603798 "Class I peroxisomal membrane protein import" maker-scaffold4876-size182805-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" augustus-scaffold548-size808714-processed-gene-5.1-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold1073-size1015831-augustus-gene-8.7-mRNA-1 5 Reactome: R-HSA-201722;Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-8866654;Reactome: R-HSA-112382 "Formation of the beta-catenin:TCF transactivating complex";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"E3 ubiquitin ligases ubiquitinate target proteins";"Formation of RNA Pol II elongation complex" maker-scaffold3448-size295922-augustus-gene-1.10-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1920-size422554-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold1362-size512754-augustus-gene-2.7-mRNA-1 1 Reactome: R-HSA-196783 "Coenzyme A biosynthesis" maker-scaffold149-size1274473-augustus-gene-2.4-mRNA-1 16 Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-2408557 "L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis" maker-scaffold1900-size419605-augustus-gene-3.4-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold2303-size376594-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-420499 "Class C/3 (Metabotropic glutamate/pheromone receptors)" maker-scaffold684-size716621-augustus-gene-3.3-mRNA-1 3 Reactome: R-HSA-2024096;Reactome: R-HSA-2206302;Reactome: R-HSA-2024101 "HS-GAG degradation";"MPS I - Hurler syndrome";"CS/DS degradation" maker-scaffold1587-size639691-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-426117 "Cation-coupled Chloride cotransporters" maker-scaffold6858-size167554-augustus-gene-0.6-mRNA-1 7 Reactome: R-HSA-2565942;Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-8854518;Reactome: R-HSA-380284 "Regulation of PLK1 Activity at G2/M Transition";"Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"AURKA Activation by TPX2";"Loss of proteins required for interphase microtubule organization from the centrosome" maker-scaffold988-size605344-augustus-gene-1.1-mRNA-1 2 MetaCyc: PWY-4261;KEGG: 00561+2.7.1.30 "Glycerol degradation I";"Glycerolipid metabolism" maker-scaffold380-size934308-augustus-gene-8.2-mRNA-1 4 Reactome: R-HSA-427389;Reactome: R-HSA-73762;Reactome: R-HSA-8943724;Reactome: R-HSA-3214815 "ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"RNA Polymerase I Transcription Initiation";"Regulation of PTEN gene transcription";"HDACs deacetylate histones" maker-scaffold2402-size355926-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-169911 "Regulation of Apoptosis" maker-scaffold1660-size824280-augustus-gene-2.4-mRNA-1 16 Reactome: R-HSA-176407;Reactome: R-HSA-69017;Reactome: R-HSA-176409;Reactome: R-HSA-174084;Reactome: R-HSA-141430;Reactome: R-HSA-176408;Reactome: R-HSA-983168;Reactome: R-HSA-2559582;Reactome: R-HSA-174048;Reactome: R-HSA-174154;Reactome: R-HSA-179409;Reactome: R-HSA-174184;Reactome: R-HSA-8853884;Reactome: R-HSA-174178;Reactome: R-HSA-176412;Reactome: R-HSA-2467813 "Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"CDK-mediated phosphorylation and removal of Cdc6";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Autodegradation of Cdh1 by Cdh1:APC/C";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Regulation of APC/C activators between G1/S and early anaphase";"Antigen processing: Ubiquitination & Proteasome degradation";"Senescence-Associated Secretory Phenotype (SASP)";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC/C:Cdc20 mediated degradation of Securin";"APC-Cdc20 mediated degradation of Nek2A";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Transcriptional Regulation by VENTX";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Phosphorylation of the APC/C";"Separation of Sister Chromatids" maker-scaffold3038-size297107-augustus-gene-1.6-mRNA-1 9 Reactome: R-HSA-6804756;Reactome: R-HSA-73776;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-167162;Reactome: R-HSA-167161;Reactome: R-HSA-76042;Reactome: R-HSA-674695;Reactome: R-HSA-167172 "Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Pre-transcription Events";"Transcription of the HIV genome" maker-scaffold389-size1115929-augustus-gene-10.2-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold1590-size464030-augustus-gene-3.8-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold1328-size518612-augustus-gene-3.4-mRNA-1 4 MetaCyc: PWY-6482;Reactome: R-HSA-8849175;Reactome: R-HSA-5358493;MetaCyc: PWY-7546 "Diphthamide biosynthesis I (archaea)";"Threonine catabolism";"Synthesis of diphthamide-EEF2";"Diphthamide biosynthesis II (eukaryotes)" maker-scaffold3165-size284171-augustus-gene-1.15-mRNA-1 6 Reactome: R-HSA-1855183;KEGG: 00562+3.1.3.36;KEGG: 04070+3.1.3.36;Reactome: R-HSA-194840;Reactome: R-HSA-1855204;MetaCyc: PWY-6368 "Synthesis of IP2, IP, and Ins in the cytosol";"Inositol phosphate metabolism";"Phosphatidylinositol signaling system";"Rho GTPase cycle";"Synthesis of IP3 and IP4 in the cytosol";"3-phosphoinositide degradation" maker-scaffold1264-size539145-augustus-gene-4.5-mRNA-1 27 Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-159227;Reactome: R-HSA-5619107;Reactome: R-HSA-165054;Reactome: R-HSA-4551638;Reactome: R-HSA-168333;Reactome: R-HSA-3232142;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-168325;Reactome: R-HSA-6784531;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-4085377;Reactome: R-HSA-170822;Reactome: R-HSA-3108214;Reactome: R-HSA-3301854;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-159230;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453 "snRNP Assembly";"HCMV Early Events";"Transport of the SLBP independent Mature mRNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of chromatin organization proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of ubiquitinylation proteins";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Viral Messenger RNA Synthesis";"tRNA processing in the nucleus";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of SUMOylation proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"SUMOylation of DNA damage response and repair proteins";"Nuclear Pore Complex (NPC) Disassembly";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"Transport of the SLBP Dependant Mature mRNA";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response" maker-scaffold1248-size539542-augustus-gene-4.7-mRNA-1 2 Reactome: R-HSA-983168;Reactome: R-HSA-8951664 "Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation" maker-scaffold1590-size464030-augustus-gene-3.6-mRNA-1 8 KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 04150+2.7.11.1 "Relaxin signaling pathway";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"Thermogenesis";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Signaling by Hippo";"mTOR signaling pathway" maker-scaffold111-size1895004-augustus-gene-15.4-mRNA-1 8 Reactome: R-HSA-1632852;Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-166208;Reactome: R-HSA-3371571;Reactome: R-HSA-165159;Reactome: R-HSA-8943724;Reactome: R-HSA-5628897 "Macroautophagy";"Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"mTORC1-mediated signalling";"HSF1-dependent transactivation";"mTOR signalling";"Regulation of PTEN gene transcription";"TP53 Regulates Metabolic Genes" maker-scaffold1242-size538367-augustus-gene-3.4-mRNA-1 17 Reactome: R-HSA-6796648;Reactome: R-HSA-69473;Reactome: R-HSA-1221632;Reactome: R-HSA-5685938;Reactome: R-HSA-3371453;KEGG: 04926+2.7.11.1;Reactome: R-HSA-6804756;KEGG: 05165+2.7.11.1;Reactome: R-HSA-5693616;Reactome: R-HSA-6783310;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-5693607;KEGG: 04150+2.7.11.1;Reactome: R-HSA-176187 "TP53 Regulates Transcription of DNA Repair Genes";"G2/M DNA damage checkpoint";"Meiotic synapsis";"HDR through Single Strand Annealing (SSA)";"Regulation of HSF1-mediated heat shock response";"Relaxin signaling pathway";"Regulation of TP53 Activity through Phosphorylation";"Human papillomavirus infection";"Presynaptic phase of homologous DNA pairing and strand exchange";"Fanconi Anemia Pathway";"Thermogenesis";"PI3K-Akt signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Processing of DNA double-strand break ends";"mTOR signaling pathway";"Activation of ATR in response to replication stress" maker-scaffold10991-size32077-augustus-gene-0.1-mRNA-1 7 Reactome: R-HSA-2029485;KEGG: 00564+3.1.4.4;KEGG: 00565+3.1.4.4;MetaCyc: PWY-3561;MetaCyc: PWY-7039;Reactome: R-HSA-1483148;Reactome: R-HSA-1483166 "Role of phospholipids in phagocytosis";"Glycerophospholipid metabolism";"Ether lipid metabolism";"Choline biosynthesis III";"Phosphatidate metabolism, as a signaling molecule";"Synthesis of PG";"Synthesis of PA" maker-scaffold824-size663141-augustus-gene-5.1-mRNA-1 1 Reactome: R-HSA-376172 "DSCAM interactions" maker-scaffold1513-size517322-augustus-gene-3.8-mRNA-1 1 Reactome: R-HSA-189451 "Heme biosynthesis" maker-scaffold13-size2141512-augustus-gene-20.3-mRNA-1 7 MetaCyc: PWY-7839;MetaCyc: PWY-7841;MetaCyc: PWY-5129;MetaCyc: PWY-7836;KEGG: 00600+2.4.1.80;MetaCyc: PWY-7838;Reactome: R-HSA-1660662 "Lacto-series glycosphingolipids biosynthesis";"Neolacto-series glycosphingolipids biosynthesis";"Sphingolipid biosynthesis (plants)";"Ganglio-series glycosphingolipids biosynthesis";"Sphingolipid metabolism";"Globo-series glycosphingolipids biosynthesis";"Glycosphingolipid metabolism" maker-scaffold4556-size200568-augustus-gene-0.3-mRNA-1 10 Reactome: R-HSA-674695;Reactome: R-HSA-76042;Reactome: R-HSA-6807505;Reactome: R-HSA-167172;Reactome: R-HSA-73779;Reactome: R-HSA-73776;Reactome: R-HSA-6804756;Reactome: R-HSA-167161;Reactome: R-HSA-75953;Reactome: R-HSA-167162 "RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA polymerase II transcribes snRNA genes";"Transcription of the HIV genome";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Promoter Escape";"Regulation of TP53 Activity through Phosphorylation";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II HIV Promoter Escape" maker-scaffold252-size1067927-augustus-gene-8.5-mRNA-1 3 Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781 "Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression" maker-scaffold36288-size12112-augustus-gene-0.1-mRNA-1 13 Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706 "L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit" maker-scaffold346-size955665-augustus-gene-6.2-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold183-size1182426-augustus-gene-5.5-mRNA-1 2 Reactome: R-HSA-6783310;Reactome: R-HSA-6796648 "Fanconi Anemia Pathway";"TP53 Regulates Transcription of DNA Repair Genes" maker-scaffold5363-size162286-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-379716;KEGG: 00970+6.1.1.1 "Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis" maker-scaffold3725-size243714-augustus-gene-1.19-mRNA-1 2 Reactome: R-HSA-8856825;Reactome: R-HSA-8856828 "Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis" maker-scaffold668-size718058-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold287-size1011457-augustus-gene-6.1-mRNA-1 2 Reactome: R-HSA-983231;Reactome: R-HSA-168138 "Factors involved in megakaryocyte development and platelet production";"Toll Like Receptor 9 (TLR9) Cascade" maker-scaffold1832-size429013-augustus-gene-3.3-mRNA-1 15 Reactome: R-HSA-5628897;Reactome: R-HSA-2559585;Reactome: R-HSA-2559580;Reactome: R-HSA-1912408;Reactome: R-HSA-9018519;Reactome: R-HSA-8986944;Reactome: R-HSA-8853884;Reactome: R-HSA-8934593;Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8943723;Reactome: R-HSA-5687128;Reactome: R-HSA-8948700;Reactome: R-HSA-4086398;Reactome: R-HSA-9022692 "TP53 Regulates Metabolic Genes";"Oncogene Induced Senescence";"Oxidative Stress Induced Senescence";"Pre-NOTCH Transcription and Translation";"Estrogen-dependent gene expression";"Transcriptional Regulation by MECP2";"Transcriptional Regulation by VENTX";"Regulation of RUNX1 Expression and Activity";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of PTEN mRNA translation";"MAPK6/MAPK4 signaling";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Ca2+ pathway";"Regulation of MECP2 expression and activity" maker-scaffold24-size1918667-augustus-gene-10.1-mRNA-1 1 Reactome: R-HSA-3214841 "PKMTs methylate histone lysines" maker-scaffold576-size780973-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-383280;Reactome: R-HSA-983231 "Nuclear Receptor transcription pathway";"Factors involved in megakaryocyte development and platelet production" maker-scaffold6729-size123553-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold2180-size383332-augustus-gene-1.3-mRNA-1 26 Reactome: R-HSA-8941856;Reactome: R-HSA-3214847;Reactome: R-HSA-5617472;Reactome: R-HSA-400253;Reactome: R-HSA-2122947;Reactome: R-HSA-9617629;Reactome: R-HSA-381340;Reactome: R-HSA-1912408;Reactome: R-HSA-9018519;Reactome: R-HSA-3899300;Reactome: R-HSA-918233;Reactome: R-HSA-201722;Reactome: R-HSA-3371568;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-8866907;Reactome: R-HSA-3134973;Reactome: R-HSA-1989781;Reactome: R-HSA-9614657;Reactome: R-HSA-1234158;Reactome: R-HSA-933541;Reactome: R-HSA-9013508;Reactome: R-HSA-5621575;Reactome: R-HSA-9013695;Reactome: R-HSA-210744;Reactome: R-HSA-1368082 "RUNX3 regulates NOTCH signaling";"HATs acetylate histones";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Circadian Clock";"NOTCH1 Intracellular Domain Regulates Transcription";"Regulation of FOXO transcriptional activity by acetylation";"Transcriptional regulation of white adipocyte differentiation";"Pre-NOTCH Transcription and Translation";"Estrogen-dependent gene expression";"SUMOylation of transcription cofactors";"TRAF3-dependent IRF activation pathway";"Formation of the beta-catenin:TCF transactivating complex";"Attenuation phase";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Activation of the TFAP2 (AP-2) family of transcription factors";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production";"PPARA activates gene expression";"FOXO-mediated transcription of cell death genes";"Regulation of gene expression by Hypoxia-inducible Factor";"TRAF6 mediated IRF7 activation";"NOTCH3 Intracellular Domain Regulates Transcription";"CD209 (DC-SIGN) signaling";"NOTCH4 Intracellular Domain Regulates Transcription";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"RORA activates gene expression" maker-scaffold3773-size240897-augustus-gene-1.8-mRNA-1 20 MetaCyc: PWY-6920;MetaCyc: PWY-7574;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7291;MetaCyc: PWY-7340;MetaCyc: PWY-7854;KEGG: 00071+1.3.3.6;KEGG: 00410+1.3.3.6;MetaCyc: PWY-5136;MetaCyc: PWY-6837;MetaCyc: PWY-7726;MetaCyc: PWY-7338;MetaCyc: PWY-7007;MetaCyc: PWY-7288;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7337;MetaCyc: PWY-7606;MetaCyc: PWY-7858;MetaCyc: PWY-735;Reactome: R-HSA-9033241 "6-gingerol analog biosynthesis (engineered)";"Propanoyl-coa degradation II";"alpha-Linolenic acid metabolism";"Oleate beta-oxidation (isomerase-dependent, yeast)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Fatty acid degradation";"beta-Alanine metabolism";"Fatty acid beta-oxidation II (plant peroxisome)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Methyl ketone biosynthesis (engineered)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Propanoate metabolism";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(5Z)-dodecenoate biosynthesis II";"Jasmonic acid biosynthesis";"Peroxisomal protein import" maker-scaffold71-size2844100-augustus-gene-10.5-mRNA-1 1 Reactome: R-HSA-2299718 "Condensation of Prophase Chromosomes" maker-scaffold985-size604716-augustus-gene-3.2-mRNA-1 4 Reactome: R-HSA-8951664;Reactome: R-HSA-5696394;Reactome: R-HSA-8856825;Reactome: R-HSA-6781823 "Neddylation";"DNA Damage Recognition in GG-NER";"Cargo recognition for clathrin-mediated endocytosis";"Formation of TC-NER Pre-Incision Complex" maker-scaffold5029-size177753-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-1660662 "Glycosphingolipid metabolism" maker-scaffold938-size622921-augustus-gene-1.2-mRNA-1 6 MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884;Reactome: R-HSA-9640463;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733 "Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I";"Wax biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis" maker-scaffold672-size730744-augustus-gene-6.6-mRNA-1 18 KEGG: 00710+2.6.1.1;KEGG: 00250+2.6.1.1;MetaCyc: PWY-7117;KEGG: 00950+2.6.1.1;KEGG: 00220+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00400+2.6.1.1;MetaCyc: PWY-6643;KEGG: 00960+2.6.1.1;MetaCyc: PWY-7383;MetaCyc: PWY-6642;MetaCyc: PWY-6638;KEGG: 00330+2.6.1.1;MetaCyc: PWY-7115;KEGG: 00350+2.6.1.1;KEGG: 00360+2.6.1.1;KEGG: 00270+2.6.1.1;KEGG: 00401+2.6.1.1 "Carbon fixation in photosynthetic organisms";"Alanine, aspartate and glutamate metabolism";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Isoquinoline alkaloid biosynthesis";"Arginine biosynthesis";"Partial TCA cycle (obligate autotrophs)";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Coenzyme M biosynthesis II";"Tropane, piperidine and pyridine alkaloid biosynthesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"(R)-cysteate degradation";"Sulfolactate degradation III";"Arginine and proline metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Tyrosine metabolism";"Phenylalanine metabolism";"Cysteine and methionine metabolism";"Novobiocin biosynthesis" maker-scaffold2384-size357200-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold935-size623014-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-211897 "Cytochrome P450 - arranged by substrate type" maker-scaffold9780-size45283-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold686-size721271-augustus-gene-1.1-mRNA-1 3 Reactome: R-HSA-164944;Reactome: R-HSA-6798695;Reactome: R-HSA-983231 "Nef and signal transduction";"Neutrophil degranulation";"Factors involved in megakaryocyte development and platelet production" maker-scaffold4145-size219426-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold5772-size147102-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-6811440 "Retrograde transport at the Trans-Golgi-Network" maker-scaffold5070-size178579-augustus-gene-0.16-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" maker-scaffold1633-size589899-augustus-gene-4.5-mRNA-1 2 Reactome: R-HSA-5663220;Reactome: R-HSA-376176 "RHO GTPases Activate Formins";"Signaling by ROBO receptors" maker-scaffold5611-size155786-augustus-gene-0.7-mRNA-1 1 Reactome: R-HSA-163765 "ChREBP activates metabolic gene expression" maker-scaffold266-size1047221-augustus-gene-8.1-mRNA-1 4 MetaCyc: PWY-7282;KEGG: 00750+1.4.3.5;Reactome: R-HSA-964975;MetaCyc: PWY-7204 "4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"Vitamin B6 metabolism";"Vitamins B6 activation to pyridoxal phosphate";"Pyridoxal 5'-phosphate salvage II (plants)" maker-scaffold4899-size183035-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold586-size798387-augustus-gene-6.3-mRNA-1 26 Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-8852276;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-389960;Reactome: R-HSA-6811436;Reactome: R-HSA-9609690;Reactome: R-HSA-6807878;Reactome: R-HSA-389977;Reactome: R-HSA-380320;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-8955332;Reactome: R-HSA-5663220;Reactome: R-HSA-983189;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295 "Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"Formation of tubulin folding intermediates by CCT/TriC";"COPI-independent Golgi-to-ER retrograde traffic";"HCMV Early Events";"COPI-mediated anterograde transport";"Post-chaperonin tubulin folding pathway";"Recruitment of NuMA to mitotic centrosomes";"Cilium Assembly";"Gap junction assembly";"Carboxyterminal post-translational modifications of tubulin";"RHO GTPases Activate Formins";"Kinesins";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation" maker-scaffold1228-size543385-augustus-gene-2.3-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold1317-size522717-augustus-gene-2.1-mRNA-1 5 Reactome: R-HSA-77387;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-917977 "Insulin receptor recycling";"ROS and RNS production in phagocytes";"Ion channel transport";"Amino acids regulate mTORC1";"Transferrin endocytosis and recycling" maker-scaffold4283-size212534-augustus-gene-1.3-mRNA-1 3 Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72187 "RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing" maker-scaffold140-size1308806-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold2080-size711383-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold1500-size481877-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold155-size1267149-augustus-gene-6.16-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold439-size877920-augustus-gene-7.10-mRNA-1 13 Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-2408557;Reactome: R-HSA-975956 "Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" maker-scaffold4681-size193381-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-913709 "O-linked glycosylation of mucins" maker-scaffold9156-size55366-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-9617828 "FOXO-mediated transcription of cell cycle genes" augustus-scaffold942-size1057814-processed-gene-3.0-mRNA-1 1 Reactome: R-HSA-912446 "Meiotic recombination" maker-scaffold1825-size433936-augustus-gene-2.1-mRNA-1 2 Reactome: R-HSA-379726;KEGG: 00970+6.1.1.4 "Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis" maker-scaffold775-size683473-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold2452-size353212-augustus-gene-1.1-mRNA-1 2 KEGG: 00620+3.1.2.6;MetaCyc: PWY-5386 "Pyruvate metabolism";"Methylglyoxal degradation I" maker-scaffold49-size1706139-augustus-gene-16.3-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-5628897 "Respiratory electron transport";"TP53 Regulates Metabolic Genes" maker-scaffold2128-size390186-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold799-size670284-augustus-gene-2.6-mRNA-1 14 MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-5972;MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-7036;Reactome: R-HSA-75876 "Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs" maker-scaffold5632-size151673-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-1660499 "Synthesis of PIPs at the plasma membrane" maker-scaffold98-size1429126-augustus-gene-10.1-mRNA-1 57 Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-174113;Reactome: R-HSA-5689880;Reactome: R-HSA-8948751;Reactome: R-HSA-349425;Reactome: R-HSA-174154;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-4608870;Reactome: R-HSA-195253;Reactome: R-HSA-202424;Reactome: R-HSA-75815;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-8941858;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-211733;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764 "SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"SCF-beta-TrCP mediated degradation of Emi1";"Ub-specific processing proteases";"Regulation of PTEN stability and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"APC/C:Cdc20 mediated degradation of Securin";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Asymmetric localization of PCP proteins";"Degradation of beta-catenin by the destruction complex";"Downstream TCR signaling";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"Hedgehog 'on' state";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of RUNX3 expression and activity";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling" maker-scaffold944-size619264-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-5620922 "BBSome-mediated cargo-targeting to cilium" augustus-scaffold3026-size295055-processed-gene-1.4-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold3550-size256511-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" augustus-scaffold5876-size144613-processed-gene-0.2-mRNA-1 1 Reactome: R-HSA-176974 "Unwinding of DNA" maker-scaffold1524-size477794-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold287-size1011457-augustus-gene-5.1-mRNA-1 1 Reactome: R-HSA-400253 "Circadian Clock" maker-scaffold4029-size235394-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold4807-size190326-augustus-gene-0.10-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" augustus-scaffold1088-size573517-processed-gene-1.0-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" maker-scaffold1425-size501538-augustus-gene-4.5-mRNA-1 3 Reactome: R-HSA-379716;KEGG: 00970+6.1.1.20;Reactome: R-HSA-2408522 "Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Selenoamino acid metabolism" augustus-scaffold7629-size119967-processed-gene-0.0-mRNA-1 5 Reactome: R-HSA-6798695;Reactome: R-HSA-2132295;Reactome: R-HSA-4341670;Reactome: R-HSA-1660662;Reactome: R-HSA-4085001 "Neutrophil degranulation";"MHC class II antigen presentation";"Defective NEU1 causes sialidosis";"Glycosphingolipid metabolism";"Sialic acid metabolism" maker-scaffold4316-size229591-augustus-gene-1.6-mRNA-1 13 MetaCyc: PWY-7736;MetaCyc: PWY-7141;MetaCyc: PWY-7709;MetaCyc: PWY-7721;MetaCyc: PWY-7410;MetaCyc: PWY-7659;MetaCyc: PWY-6859;MetaCyc: PWY-6383;MetaCyc: PWY-5123;MetaCyc: PWY-5122;MetaCyc: PWY-7182;MetaCyc: PWY-7102;KEGG: 00900+2.5.1.10+2.5.1.1 "Stellatic acid biosynthesis";"(3S)-linalool biosynthesis";"(3R)-linalool biosynthesis";"Methyl phomopsenoate biosynthesis";"Ipsdienol biosynthesis";"Viridicatumtoxin biosynthesis";"All-trans-farnesol biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"Geranyl diphosphate biosynthesis";"Linalool biosynthesis I";"Bisabolene biosynthesis (engineered)";"Terpenoid backbone biosynthesis" maker-scaffold2323-size375406-augustus-gene-2.11-mRNA-1 11 Reactome: R-HSA-418555;Reactome: R-HSA-163359;KEGG: 00230+4.6.1.1;Reactome: R-HSA-164378;Reactome: R-HSA-418597;Reactome: R-HSA-418594;Reactome: R-HSA-5610787;Reactome: R-HSA-163615;Reactome: R-HSA-432040;Reactome: R-HSA-170670;Reactome: R-HSA-170660 "G alpha (s) signalling events";"Glucagon signaling in metabolic regulation";"Purine metabolism";"PKA activation in glucagon signalling";"G alpha (z) signalling events";"G alpha (i) signalling events";"Hedgehog 'off' state";"PKA activation";"Vasopressin regulates renal water homeostasis via Aquaporins";"Adenylate cyclase inhibitory pathway";"Adenylate cyclase activating pathway" maker-scaffold15573-size16385-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-72764;Reactome: R-HSA-156581 "Eukaryotic Translation Termination";"Methylation" maker-scaffold183-size1182426-augustus-gene-5.4-mRNA-1 2 Reactome: R-HSA-6796648;Reactome: R-HSA-6783310 "TP53 Regulates Transcription of DNA Repair Genes";"Fanconi Anemia Pathway" maker-scaffold2471-size350398-augustus-gene-0.0-mRNA-1 1 Reactome: R-HSA-140342 "Apoptosis induced DNA fragmentation" maker-scaffold8298-size76182-augustus-gene-0.3-mRNA-1 2 KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788 "Starch and sucrose metabolism";"Cellulose degradation II (fungi)" maker-scaffold864-size644941-augustus-gene-5.6-mRNA-1 5 MetaCyc: PWY-8043;KEGG: 00270+6.3.2.3;Reactome: R-HSA-5579006;Reactome: R-HSA-174403;KEGG: 00480+6.3.2.3 "Ophthalmate biosynthesis";"Cysteine and methionine metabolism";"Defective GSS causes Glutathione synthetase deficiency (GSS deficiency)";"Glutathione synthesis and recycling";"Glutathione metabolism" maker-scaffold1691-size454036-augustus-gene-3.4-mRNA-1 18 MetaCyc: PWY-5690;Reactome: R-HSA-70263;KEGG: 00270+1.1.1.37;MetaCyc: PWY-1622;MetaCyc: PWY-6969;KEGG: 00020+1.1.1.37;KEGG: 00620+1.1.1.37;KEGG: 00630+1.1.1.37;MetaCyc: PWY-561;MetaCyc: PWY-7115;KEGG: 00710+1.1.1.37;MetaCyc: PWY-6728;MetaCyc: PWY-7383;MetaCyc: PWY-5392;KEGG: 00720+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-5913;KEGG: 00680+1.1.1.37 "TCA cycle II (plants and fungi)";"Gluconeogenesis";"Cysteine and methionine metabolism";"Formaldehyde assimilation I (serine pathway)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Citrate cycle (TCA cycle)";"Pyruvate metabolism";"Glyoxylate and dicarboxylate metabolism";"Superpathway of glyoxylate cycle and fatty acid degradation";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Carbon fixation in photosynthetic organisms";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, cytosol)";"Reductive TCA cycle II";"Carbon fixation pathways in prokaryotes";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Partial TCA cycle (obligate autotrophs)";"Methane metabolism" maker-scaffold7565-size98670-augustus-gene-0.3-mRNA-1 3 MetaCyc: PWY-8099;KEGG: 00790+4.2.1.96;MetaCyc: PWY-7158 "Tetrahydropteridine recycling";"Folate biosynthesis";"L-phenylalanine degradation V" maker-scaffold622-size737393-augustus-gene-6.4-mRNA-1 13 Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-975957;Reactome: R-HSA-6791226 "Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold2080-size711383-augustus-gene-5.4-mRNA-1 2 Reactome: R-HSA-5610787;Reactome: R-HSA-5620924 "Hedgehog 'off' state";"Intraflagellar transport" maker-scaffold4451-size205584-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-8949613 "Cristae formation" maker-scaffold3513-size258726-augustus-gene-1.10-mRNA-1 5 Reactome: R-HSA-212300;KEGG: 00270+2.1.1.37;Reactome: R-HSA-5334118;Reactome: R-HSA-4655427;Reactome: R-HSA-427413 "PRC2 methylates histones and DNA";"Cysteine and methionine metabolism";"DNA methylation";"SUMOylation of DNA methylation proteins";"NoRC negatively regulates rRNA expression" maker-scaffold16584-size18792-augustus-gene-0.1-mRNA-1 5 KEGG: 04070+3.1.3.64;Reactome: R-HSA-1660499;MetaCyc: PWY-6580;KEGG: 00562+3.1.3.64;MetaCyc: PWY-6368 "Phosphatidylinositol signaling system";"Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol biosynthesis I (bacteria)";"Inositol phosphate metabolism";"3-phosphoinositide degradation" maker-scaffold1654-size576866-augustus-gene-4.5-mRNA-1 6 Reactome: R-HSA-9640463;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884 "Wax biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I" maker-scaffold375-size930694-augustus-gene-7.5-mRNA-1 2 Reactome: R-HSA-380270;Reactome: R-HSA-380320 "Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes" maker-scaffold257-size1050201-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-83936 "Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane" augustus-scaffold1525-size570640-processed-gene-4.0-mRNA-1 1 Reactome: R-HSA-211981 "Xenobiotics" maker-scaffold231-size1084165-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-201451 "Signaling by BMP" maker-scaffold9914-size44313-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-5632928 "Defective Mismatch Repair Associated With MSH2" maker-scaffold162-size1244512-augustus-gene-11.7-mRNA-1 1 Reactome: R-HSA-606279 "Deposition of new CENPA-containing nucleosomes at the centromere" maker-scaffold24241-size13407-augustus-gene-0.2-mRNA-1 3 MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2;KEGG: 00740+3.1.3.2 "Phosphate acquisition";"Thiamine metabolism";"Riboflavin metabolism" maker-scaffold7149-size100101-augustus-gene-0.2-mRNA-1 7 Reactome: R-HSA-8943724;Reactome: R-HSA-8953750;Reactome: R-HSA-5617472;Reactome: R-HSA-3214841;Reactome: R-HSA-9609690;Reactome: R-HSA-212300;Reactome: R-HSA-2559580 "Regulation of PTEN gene transcription";"Transcriptional Regulation by E2F6";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"PKMTs methylate histone lysines";"HCMV Early Events";"PRC2 methylates histones and DNA";"Oxidative Stress Induced Senescence" maker-scaffold1809-size431807-augustus-gene-2.4-mRNA-1 1 MetaCyc: PWY-7533 "Gliotoxin biosynthesis" augustus-scaffold80-size1512238-processed-gene-10.1-mRNA-1 1 Reactome: R-HSA-5693568 "Resolution of D-loop Structures through Holliday Junction Intermediates" maker-scaffold7966-size82047-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold5297-size165054-augustus-gene-0.3-mRNA-1 6 Reactome: R-HSA-5632927;Reactome: R-HSA-5358565;Reactome: R-HSA-5632968;Reactome: R-HSA-5632928;Reactome: R-HSA-6796648;Reactome: R-HSA-5358606 "Defective Mismatch Repair Associated With MSH3";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Defective Mismatch Repair Associated With MSH6";"Defective Mismatch Repair Associated With MSH2";"TP53 Regulates Transcription of DNA Repair Genes";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)" maker-scaffold266-size1047221-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-6807505 "RNA polymerase II transcribes snRNA genes" maker-scaffold1780-size440555-augustus-gene-3.2-mRNA-1 5 MetaCyc: PWY-6855;Reactome: R-HSA-189085;MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00520+3.2.1.14 "Chitin degradation I (archaea)";"Digestion of dietary carbohydrate";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Amino sugar and nucleotide sugar metabolism" maker-scaffold3453-size262053-augustus-gene-1.8-mRNA-1 15 Reactome: R-HSA-5685942;Reactome: R-HSA-5693548;Reactome: R-HSA-5693568;Reactome: R-HSA-2559586;Reactome: R-HSA-912446;Reactome: R-HSA-69473;Reactome: R-HSA-5693607;Reactome: R-HSA-5685939;Reactome: R-HSA-5693571;Reactome: R-HSA-5693554;Reactome: R-HSA-5693565;Reactome: R-HSA-5685938;Reactome: R-HSA-6804756;Reactome: R-HSA-5693579;Reactome: R-HSA-5693616 "HDR through Homologous Recombination (HRR)";"Sensing of DNA Double Strand Breaks";"Resolution of D-loop Structures through Holliday Junction Intermediates";"DNA Damage/Telomere Stress Induced Senescence";"Meiotic recombination";"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends";"HDR through MMEJ (alt-NHEJ)";"Nonhomologous End-Joining (NHEJ)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"HDR through Single Strand Annealing (SSA)";"Regulation of TP53 Activity through Phosphorylation";"Homologous DNA Pairing and Strand Exchange";"Presynaptic phase of homologous DNA pairing and strand exchange" augustus-scaffold5162-size172215-processed-gene-0.1-mRNA-1 17 Reactome: R-HSA-174417;Reactome: R-HSA-5696400;Reactome: R-HSA-174414;Reactome: R-HSA-5696397;Reactome: R-HSA-5685942;Reactome: R-HSA-5656169;Reactome: R-HSA-5358606;Reactome: R-HSA-174437;Reactome: R-HSA-110314;Reactome: R-HSA-69091;Reactome: R-HSA-5651801;Reactome: R-HSA-6782135;Reactome: R-HSA-5358565;Reactome: R-HSA-174411;Reactome: R-HSA-6782210;Reactome: R-HSA-69183;Reactome: R-HSA-69166 "Telomere C-strand (Lagging Strand) Synthesis";"Dual Incision in GG-NER";"Processive synthesis on the C-strand of the telomere";"Gap-filling DNA repair synthesis and ligation in GG-NER";"HDR through Homologous Recombination (HRR)";"Termination of translesion DNA synthesis";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Removal of the Flap Intermediate from the C-strand";"Recognition of DNA damage by PCNA-containing replication complex";"Polymerase switching";"PCNA-Dependent Long Patch Base Excision Repair";"Dual incision in TC-NER";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Polymerase switching on the C-strand of the telomere";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Processive synthesis on the lagging strand";"Removal of the Flap Intermediate" maker-scaffold3972-size229314-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-5083635;Reactome: R-HSA-5173214 "Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins" maker-scaffold3273-size280388-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold265-size1040580-augustus-gene-9.6-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold2396-size553488-augustus-gene-4.6-mRNA-1 1 Reactome: R-HSA-5693607 "Processing of DNA double-strand break ends" maker-scaffold2782-size318407-augustus-gene-2.6-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold1317-size522717-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-611105 "Respiratory electron transport" maker-scaffold909-size631154-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold105-size1412485-augustus-gene-9.2-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold5464-size161566-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold1188-size553351-augustus-gene-4.5-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold730-size696878-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-8849932 "Synaptic adhesion-like molecules" maker-scaffold207-size1178031-augustus-gene-10.5-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold989-size604863-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-211945 "Phase I - Functionalization of compounds" maker-scaffold4161-size221654-augustus-gene-1.3-mRNA-1 20 MetaCyc: PWY-7726;MetaCyc: PWY-7338;MetaCyc: PWY-7007;MetaCyc: PWY-7288;KEGG: 00640+1.3.3.6;KEGG: 00410+1.3.3.6;KEGG: 00071+1.3.3.6;MetaCyc: PWY-5136;MetaCyc: PWY-6837;MetaCyc: PWY-7291;MetaCyc: PWY-7854;MetaCyc: PWY-7340;MetaCyc: PWY-6920;MetaCyc: PWY-7574;KEGG: 00592+1.3.3.6;MetaCyc: PWY-735;Reactome: R-HSA-9033241;MetaCyc: PWY-7606;MetaCyc: PWY-7858;MetaCyc: PWY-7337 "(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Methyl ketone biosynthesis (engineered)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Propanoate metabolism";"beta-Alanine metabolism";"Fatty acid degradation";"Fatty acid beta-oxidation II (plant peroxisome)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"6-gingerol analog biosynthesis (engineered)";"Propanoyl-coa degradation II";"alpha-Linolenic acid metabolism";"Jasmonic acid biosynthesis";"Peroxisomal protein import";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(5Z)-dodecenoate biosynthesis II";"10-cis-heptadecenoyl-CoA degradation (yeast)" maker-scaffold3761-size244645-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold26-size1882145-augustus-gene-7.2-mRNA-1 57 Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-5607761;Reactome: R-HSA-4641257;Reactome: R-HSA-1236978;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-69601;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-5607764;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-211733;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-2871837;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-382556;Reactome: R-HSA-1169091;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-174113;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-8852276;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-9020702;Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-5632684;Reactome: R-HSA-1236974;Reactome: R-HSA-1234176;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-75815;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-5610780;Reactome: R-HSA-180585 "AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of AXIN";"Cross-presentation of soluble exogenous antigens (endosomes)";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"CLEC7A (Dectin-1) signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"FCERI mediated NF-kB activation";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"ABC-family proteins mediated transport";"Activation of NF-kappaB in B cells";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"Interleukin-1 signaling";"Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Hedgehog 'on' state";"ER-Phagosome pathway";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Ubiquitin-dependent degradation of Cyclin D";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G" maker-scaffold4980-size181082-augustus-gene-0.6-mRNA-1 18 MetaCyc: PWY-7227;MetaCyc: PWY-7205;MetaCyc: PWY-7222;MetaCyc: PWY-6545;KEGG: 00983+2.7.4.6;Reactome: R-HSA-499943;MetaCyc: PWY-7187;MetaCyc: PWY-7176;MetaCyc: PWY-7224;MetaCyc: PWY-7197;MetaCyc: PWY-7210;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7220;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7221;MetaCyc: PWY-7184;MetaCyc: PWY-7226;MetaCyc: PWY-7198 "Adenosine deoxyribonucleotides de novo biosynthesis";"CMP phosphorylation";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Drug metabolism - other enzymes";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"UTP and CTP de novo biosynthesis";"Purine deoxyribonucleosides salvage";"Pyrimidine deoxyribonucleotide phosphorylation";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Purine metabolism";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine metabolism";"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV" maker-scaffold2750-size610360-augustus-gene-5.3-mRNA-1 7 Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780 "RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation" maker-scaffold9332-size55196-augustus-gene-0.2-mRNA-1 6 Reactome: R-HSA-9640463;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884 "Wax biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I" maker-scaffold7449-size92727-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-3238698 "WNT ligand biogenesis and trafficking" maker-scaffold345-size957666-augustus-gene-7.3-mRNA-1 3 Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648 "Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK" maker-scaffold3114-size289786-augustus-gene-1.7-mRNA-1 4 Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-8856825;Reactome: R-HSA-5696394 "Formation of TC-NER Pre-Incision Complex";"Neddylation";"Cargo recognition for clathrin-mediated endocytosis";"DNA Damage Recognition in GG-NER" maker-scaffold3466-size262803-augustus-gene-1.4-mRNA-1 13 Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72689;Reactome: R-HSA-156827 "Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression" maker-scaffold161-size1247815-augustus-gene-4.3-mRNA-1 3 Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648 "Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK" maker-scaffold346-size955665-augustus-gene-8.5-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold833-size659279-augustus-gene-5.3-mRNA-1 7 Reactome: R-HSA-983168;Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-429958;Reactome: R-HSA-380994;Reactome: R-HSA-450604;Reactome: R-HSA-6791226 "Antigen processing: Ubiquitination & Proteasome degradation";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"ATF4 activates genes in response to endoplasmic reticulum stress";"KSRP (KHSRP) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold5175-size171532-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-6811434 "COPI-dependent Golgi-to-ER retrograde traffic" augustus-scaffold3398-size266872-processed-gene-1.1-mRNA-1 2 Reactome: R-HSA-9033241;Reactome: R-HSA-8866654 "Peroxisomal protein import";"E3 ubiquitin ligases ubiquitinate target proteins" maker-scaffold4076-size223700-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-2151201 "Transcriptional activation of mitochondrial biogenesis" maker-scaffold5453-size165750-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-389661 "Glyoxylate metabolism and glycine degradation" maker-scaffold812-size676321-augustus-gene-1.3-mRNA-1 7 KEGG: 00330+3.5.3.1;MetaCyc: PWY-46;MetaCyc: PWY-6922;Reactome: R-HSA-70635;MetaCyc: PWY-31;MetaCyc: PWY-4984;KEGG: 00220+3.5.3.1 "Arginine and proline metabolism";"Putrescine biosynthesis III";"L-Ndelta-acetylornithine biosynthesis";"Urea cycle";"Canavanine degradation";"Urea cycle";"Arginine biosynthesis" maker-scaffold1470-size491768-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-426117 "Cation-coupled Chloride cotransporters" maker-scaffold159-size1264154-augustus-gene-9.7-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold1371-size831444-augustus-gene-3.4-mRNA-1 7 KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04150+2.7.11.1 "Relaxin signaling pathway";"Thermogenesis";"PI3K-Akt signaling pathway";"Human papillomavirus infection";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"mTOR signaling pathway" maker-scaffold1414-size505216-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-2408522;Reactome: R-HSA-379716 "Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation" maker-scaffold230-size1089831-augustus-gene-9.4-mRNA-1 1 Reactome: R-HSA-1474228 "Degradation of the extracellular matrix" maker-scaffold1250-size535852-augustus-gene-4.10-mRNA-1 6 Reactome: R-HSA-110362;Reactome: R-HSA-5685939;Reactome: R-HSA-5651801;Reactome: R-HSA-174437;Reactome: R-HSA-162594;Reactome: R-HSA-69166 "POLB-Dependent Long Patch Base Excision Repair";"HDR through MMEJ (alt-NHEJ)";"PCNA-Dependent Long Patch Base Excision Repair";"Removal of the Flap Intermediate from the C-strand";"Early Phase of HIV Life Cycle";"Removal of the Flap Intermediate" maker-scaffold31275-size6700-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" augustus-scaffold461-size860480-processed-gene-6.0-mRNA-1 30 Reactome: R-HSA-1170546;Reactome: R-HSA-2644606;Reactome: R-HSA-174113;Reactome: R-HSA-1169091;Reactome: R-HSA-2894862;Reactome: R-HSA-5610785;Reactome: R-HSA-2871837;Reactome: R-HSA-5607761;Reactome: R-HSA-8854050;Reactome: R-HSA-68949;Reactome: R-HSA-5676590;Reactome: R-HSA-400253;Reactome: R-HSA-187577;Reactome: R-HSA-2122947;Reactome: R-HSA-9604323;Reactome: R-HSA-917937;Reactome: R-HSA-9020702;Reactome: R-HSA-8951664;Reactome: R-HSA-5684264;Reactome: R-HSA-180534;Reactome: R-HSA-8939902;Reactome: R-HSA-2644607;Reactome: R-HSA-2565942;Reactome: R-HSA-5607764;Reactome: R-HSA-5610783;Reactome: R-HSA-69231;Reactome: R-HSA-983168;Reactome: R-HSA-5610780;Reactome: R-HSA-202424;Reactome: R-HSA-195253 "Prolactin receptor signaling";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"SCF-beta-TrCP mediated degradation of Emi1";"Activation of NF-kappaB in B cells";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"GLI3 is processed to GLI3R by the proteasome";"FCERI mediated NF-kB activation";"Dectin-1 mediated noncanonical NF-kB signaling";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Orc1 removal from chromatin";"NIK-->noncanonical NF-kB signaling";"Circadian Clock";"SCF(Skp2)-mediated degradation of p27/p21";"NOTCH1 Intracellular Domain Regulates Transcription";"Negative regulation of NOTCH4 signaling";"Iron uptake and transport";"Interleukin-1 signaling";"Neddylation";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Vpu mediated degradation of CD4";"Regulation of RUNX2 expression and activity";"Loss of Function of FBXW7 in Cancer and NOTCH1 Signaling";"Regulation of PLK1 Activity at G2/M Transition";"CLEC7A (Dectin-1) signaling";"Degradation of GLI2 by the proteasome";"Cyclin D associated events in G1";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of GLI1 by the proteasome";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex" maker-scaffold4921-size184217-augustus-gene-0.5-mRNA-1 2 KEGG: 00030+2.7.1.15;Reactome: R-HSA-71336 "Pentose phosphate pathway";"Pentose phosphate pathway" augustus-scaffold810-size665419-processed-gene-2.3-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold2345-size361280-augustus-gene-2.2-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" augustus-scaffold4359-size209734-processed-gene-1.6-mRNA-1 3 Reactome: R-HSA-216083;Reactome: R-HSA-6798695;Reactome: R-HSA-6811434 "Integrin cell surface interactions";"Neutrophil degranulation";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold5773-size266016-augustus-gene-1.6-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold4582-size198577-augustus-gene-0.8-mRNA-1 3 Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856 "mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination" augustus-scaffold501-size831687-processed-gene-7.2-mRNA-1 5 KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;Reactome: R-HSA-5675221;Reactome: R-HSA-112409 "PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"Negative regulation of MAPK pathway";"RAF-independent MAPK1/3 activation" maker-scaffold3924-size230876-augustus-gene-0.3-mRNA-1 6 MetaCyc: PWY-5497;Reactome: R-HSA-74259;KEGG: 00230+3.5.4.3;MetaCyc: PWY-7442;MetaCyc: PWY-6606;MetaCyc: PWY-6608 "Purine nucleobases degradation II (anaerobic)";"Purine catabolism";"Purine metabolism";"Drosopterin and aurodrosopterin biosynthesis";"Guanosine nucleotides degradation II";"Guanosine nucleotides degradation III" maker-scaffold527-size817113-augustus-gene-7.7-mRNA-1 3 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878;Reactome: R-HSA-6798695 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"Neutrophil degranulation" maker-scaffold1825-size433936-augustus-gene-1.2-mRNA-1 3 KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16 "Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway" maker-scaffold9507-size58133-augustus-gene-0.2-mRNA-1 31 MetaCyc: PWY-8047;MetaCyc: PWY-7746;MetaCyc: PWY-5973;MetaCyc: PWY-6282;MetaCyc: PWY-7858;MetaCyc: PWY-5142;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;MetaCyc: PWY-5367;MetaCyc: PWY-7663;MetaCyc: PWY-6113;Reactome: R-HSA-75105;MetaCyc: PWY-5966-1;MetaCyc: PWY-5971;MetaCyc: PWY-5366;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;Reactome: R-HSA-2426168;MetaCyc: PWY-6799;MetaCyc: PWY-7388;MetaCyc: PWY-8049;MetaCyc: PWYG-321;MetaCyc: PWY-8012;MetaCyc: PWY-5989;MetaCyc: PWY-7723;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;Reactome: R-HSA-163765;MetaCyc: PWY-4381;MetaCyc: PWY-5147;MetaCyc: PWY-6519;MetaCyc: PWY-7664;MetaCyc: PWY-5994 "Bryostatin biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Cis-vaccenate biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"(5Z)-dodecenoate biosynthesis II";"Acyl-[acyl-carrier protein] thioesterase pathway";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Petroselinate biosynthesis";"Gondoate biosynthesis (anaerobic)";"Superpathway of mycolate biosynthesis";"Fatty acyl-CoA biosynthesis";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Palmitoleate biosynthesis II (plants and bacteria)";"Fatty acid biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Fatty acid biosynthesis initiation (plant mitochondria)";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Pederin biosynthesis";"";"Mupirocin biosynthesis";"Stearate biosynthesis II (bacteria and plants)";"Bacterial bioluminescence";"Biotin metabolism";"ChREBP activates metabolic gene expression";"Fatty acid biosynthesis initiation (bacteria and plants)";"Oleate biosynthesis I (plants)";"8-amino-7-oxononanoate biosynthesis I";"Oleate biosynthesis IV (anaerobic)";"Palmitate biosynthesis (animals and fungi, cytoplasm)" augustus-scaffold858-size649046-processed-gene-5.1-mRNA-1 2 Reactome: R-HSA-445095;Reactome: R-HSA-5576892 "Interaction between L1 and Ankyrins";"Phase 0 - rapid depolarisation" augustus-scaffold1632-size462539-processed-gene-3.0-mRNA-1 11 MetaCyc: PWY-381;KEGG: 00220+6.3.1.2;KEGG: 00630+6.3.1.2;Reactome: R-HSA-8964539;Reactome: R-HSA-210455;KEGG: 00910+6.3.1.2;MetaCyc: PWY-6549;MetaCyc: PWY-6963;KEGG: 00250+6.3.1.2;MetaCyc: PWY-5675;MetaCyc: PWY-6964 "Nitrate reduction II (assimilatory)";"Arginine biosynthesis";"Glyoxylate and dicarboxylate metabolism";"Glutamate and glutamine metabolism";"Astrocytic Glutamate-Glutamine Uptake And Metabolism";"Nitrogen metabolism";"L-glutamine biosynthesis III";"Ammonia assimilation cycle I";"Alanine, aspartate and glutamate metabolism";"Nitrate reduction V (assimilatory)";"Ammonia assimilation cycle II" maker-scaffold375-size930694-augustus-gene-4.4-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" maker-scaffold5906-size149709-augustus-gene-0.2-mRNA-1 7 KEGG: 00190+7.1.2.2;KEGG: 00195+7.1.2.2;MetaCyc: PWY-7980;Reactome: R-HSA-163210;Reactome: R-HSA-1268020;Reactome: R-HSA-2151201;Reactome: R-HSA-8949613 "Oxidative phosphorylation";"Photosynthesis";"ATP biosynthesis";"Formation of ATP by chemiosmotic coupling";"Mitochondrial protein import";"Transcriptional activation of mitochondrial biogenesis";"Cristae formation" maker-scaffold1618-size585542-augustus-gene-2.5-mRNA-1 10 Reactome: R-HSA-2160916;KEGG: 00600+3.2.1.23;Reactome: R-HSA-2024096;KEGG: 00531+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00604+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;Reactome: R-HSA-2206292 "Hyaluronan uptake and degradation";"Sphingolipid metabolism";"HS-GAG degradation";"Glycosaminoglycan degradation";"Neutrophil degranulation";"Glycosphingolipid biosynthesis - ganglio series";"Xyloglucan degradation II (exoglucanase)";"Galactose metabolism";"Other glycan degradation";"MPS VII - Sly syndrome" maker-scaffold2165-size384976-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-6783310 "Fanconi Anemia Pathway" maker-scaffold7513-size91676-augustus-gene-0.3-mRNA-1 5 Reactome: R-HSA-4641257;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-201681;MetaCyc: PWY-7511 "Degradation of AXIN";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"TCF dependent signaling in response to WNT";"Protein ubiquitination" maker-scaffold5598-size155008-augustus-gene-0.3-mRNA-1 27 Reactome: R-HSA-159230;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-168276;Reactome: R-HSA-9610379;Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-4085377;Reactome: R-HSA-168325;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-1169408;Reactome: R-HSA-4615885;Reactome: R-HSA-168333;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-159227 "Transport of the SLBP Dependant Mature mRNA";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"NS1 Mediated Effects on Host Pathways";"HCMV Late Events";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of SUMOylation proteins";"Viral Messenger RNA Synthesis";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"ISG15 antiviral mechanism";"SUMOylation of DNA replication proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"snRNP Assembly";"HCMV Early Events";"Transport of the SLBP independent Mature mRNA" maker-scaffold1419-size504948-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" maker-scaffold109-size1399775-augustus-gene-11.1-mRNA-1 2 KEGG: 00500+3.2.1.28;Reactome: R-HSA-189085 "Starch and sucrose metabolism";"Digestion of dietary carbohydrate" maker-scaffold1237-size542239-augustus-gene-4.2-mRNA-1 1 Reactome: R-HSA-390522 "Striated Muscle Contraction" maker-scaffold5077-size174650-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold2242-size371480-augustus-gene-2.12-mRNA-1 9 Reactome: R-HSA-416476;Reactome: R-HSA-1855204;KEGG: 04070+3.1.4.11;MetaCyc: PWY-6351;Reactome: R-HSA-112043;MetaCyc: PWY-8052;MetaCyc: PWY-7039;MetaCyc: PWY-6367;KEGG: 00562+3.1.4.11 "G alpha (q) signalling events";"Synthesis of IP3 and IP4 in the cytosol";"Phosphatidylinositol signaling system";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"PLC beta mediated events";"2-arachidonoylglycerol biosynthesis";"Phosphatidate metabolism, as a signaling molecule";"D-myo-inositol-5-phosphate metabolism";"Inositol phosphate metabolism" maker-scaffold573-size939396-augustus-gene-6.0-mRNA-1 10 Reactome: R-HSA-674695;Reactome: R-HSA-76042;Reactome: R-HSA-6807505;Reactome: R-HSA-167172;Reactome: R-HSA-73779;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-75953;Reactome: R-HSA-167162;Reactome: R-HSA-9018519 "RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA polymerase II transcribes snRNA genes";"Transcription of the HIV genome";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"Estrogen-dependent gene expression" maker-scaffold2392-size460494-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-947581 "Molybdenum cofactor biosynthesis" maker-scaffold243-size1067493-augustus-gene-6.1-mRNA-1 5 Reactome: R-HSA-8963896;Reactome: R-HSA-2214320;Reactome: R-HSA-1650814;Reactome: R-HSA-1474228;Reactome: R-HSA-2243919 "HDL assembly";"Anchoring fibril formation";"Collagen biosynthesis and modifying enzymes";"Degradation of the extracellular matrix";"Crosslinking of collagen fibrils" maker-scaffold6-size2830676-augustus-gene-27.3-mRNA-1 1 Reactome: R-HSA-6811440 "Retrograde transport at the Trans-Golgi-Network" maker-scaffold261-size1668889-augustus-gene-2.7-mRNA-1 6 KEGG: 00710+5.1.3.1;MetaCyc: PWY-1861;Reactome: R-HSA-71336;KEGG: 00030+5.1.3.1;KEGG: 00040+5.1.3.1;MetaCyc: PWY-5723 "Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Pentose phosphate pathway";"Pentose phosphate pathway";"Pentose and glucuronate interconversions";"Rubisco shunt" maker-scaffold719-size703734-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-2206307;Reactome: R-HSA-2024096 "MPS IIIA - Sanfilippo syndrome A";"HS-GAG degradation" maker-scaffold1963-size412658-augustus-gene-3.9-mRNA-1 5 KEGG: 00330+1.5.1.2;MetaCyc: PWY-3341;Reactome: R-HSA-8964539;MetaCyc: PWY-4981;MetaCyc: PWY-6344 "Arginine and proline metabolism";"L-proline biosynthesis III (from L-ornithine)";"Glutamate and glutamine metabolism";"L-proline biosynthesis II (from arginine)";"L-ornithine degradation II (Stickland reaction)" augustus-scaffold3449-size263747-processed-gene-1.2-mRNA-1 8 KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-6791226;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1 "Thermogenesis";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Major pathway of rRNA processing in the nucleolus and cytosol";"Relaxin signaling pathway";"Human papillomavirus infection" maker-scaffold8945-size67309-augustus-gene-0.4-mRNA-1 2 MetaCyc: PWY-6854;Reactome: R-HSA-3299685 "Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species" maker-scaffold2925-size303882-augustus-gene-1.7-mRNA-1 8 Reactome: R-HSA-606279;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-6783310;Reactome: R-HSA-141444 "Deposition of new CENPA-containing nucleosomes at the centromere";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Fanconi Anemia Pathway";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" maker-scaffold1051-size584540-augustus-gene-4.5-mRNA-1 1 Reactome: R-HSA-71288 "Creatine metabolism" maker-scaffold7184-size162086-augustus-gene-0.8-mRNA-1 7 MetaCyc: PWY-7238;Reactome: R-HSA-70221;MetaCyc: PWY-6724;Reactome: R-HSA-6798695;MetaCyc: PWY-5941;KEGG: 00500+2.4.1.25;MetaCyc: PWY-6737 "Sucrose biosynthesis II";"Glycogen breakdown (glycogenolysis)";"Starch degradation II";"Neutrophil degranulation";"Glycogen degradation II";"Starch and sucrose metabolism";"Starch degradation V" maker-scaffold3566-size277314-augustus-gene-1.5-mRNA-1 2 KEGG: 04660+2.7.10.2;Reactome: R-HSA-1433557 "T cell receptor signaling pathway";"Signaling by SCF-KIT" maker-scaffold782-size690239-augustus-gene-5.10-mRNA-1 1 Reactome: R-HSA-1445148 "Translocation of SLC2A4 (GLUT4) to the plasma membrane" maker-scaffold25-size3374183-augustus-gene-9.5-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold1357-size516868-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-1268020 "Mitochondrial protein import" maker-scaffold200-size1131578-augustus-gene-2.2-mRNA-1 2 Reactome: R-HSA-72165;Reactome: R-HSA-72163 "mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway" maker-scaffold666-size716562-augustus-gene-6.4-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold665-size828341-augustus-gene-7.8-mRNA-1 3 Reactome: R-HSA-3359471;KEGG: 00860+2.5.1.17;Reactome: R-HSA-196741 "Defective MMAB causes methylmalonic aciduria type cblB";"Porphyrin and chlorophyll metabolism";"Cobalamin (Cbl, vitamin B12) transport and metabolism" maker-scaffold1878-size425267-augustus-gene-3.10-mRNA-1 10 KEGG: 00051+2.7.1.11;MetaCyc: PWY-7385;Reactome: R-HSA-70171;KEGG: 00030+2.7.1.11;KEGG: 00680+2.7.1.11;MetaCyc: PWY-1861;KEGG: 00052+2.7.1.11;MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00010+2.7.1.11 "Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Glycolysis";"Pentose phosphate pathway";"Methane metabolism";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Galactose metabolism";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis / Gluconeogenesis" augustus-scaffold16894-size14110-processed-gene-0.0-mRNA-1 13 Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553 "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs" maker-scaffold168-size1228153-augustus-gene-6.0-mRNA-1 19 Reactome: R-HSA-70263;KEGG: 00270+1.1.1.37;MetaCyc: PWY-1622;MetaCyc: PWY-5690;KEGG: 00630+1.1.1.37;Reactome: R-HSA-71403;MetaCyc: PWY-6969;KEGG: 00020+1.1.1.37;KEGG: 00620+1.1.1.37;KEGG: 00720+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-7115;KEGG: 00710+1.1.1.37;MetaCyc: PWY-561;MetaCyc: PWY-6728;MetaCyc: PWY-7383;MetaCyc: PWY-5392;KEGG: 00680+1.1.1.37;MetaCyc: PWY-5913 "Gluconeogenesis";"Cysteine and methionine metabolism";"Formaldehyde assimilation I (serine pathway)";"TCA cycle II (plants and fungi)";"Glyoxylate and dicarboxylate metabolism";"Citric acid cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Citrate cycle (TCA cycle)";"Pyruvate metabolism";"Carbon fixation pathways in prokaryotes";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Carbon fixation in photosynthetic organisms";"Superpathway of glyoxylate cycle and fatty acid degradation";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, cytosol)";"Reductive TCA cycle II";"Methane metabolism";"Partial TCA cycle (obligate autotrophs)" maker-scaffold2574-size343500-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold6201-size129385-augustus-gene-0.6-mRNA-1 2 Reactome: R-HSA-1268020;Reactome: R-HSA-71403 "Mitochondrial protein import";"Citric acid cycle (TCA cycle)" maker-scaffold3379-size272277-augustus-gene-1.9-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I" maker-scaffold491-size903384-augustus-gene-7.2-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold5670-size150794-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-379716 "Cytosolic tRNA aminoacylation" maker-scaffold1337-size521071-augustus-gene-2.3-mRNA-1 4 KEGG: 00270+2.5.1.6;MetaCyc: PWY-5041;MetaCyc: PWY-5912;Reactome: R-HSA-156581 "Cysteine and methionine metabolism";"S-adenosyl-L-methionine cycle II";"2'-deoxymugineic acid phytosiderophore biosynthesis";"Methylation" maker-scaffold472-size998402-augustus-gene-8.10-mRNA-1 2 Reactome: R-HSA-426486;Reactome: R-HSA-203927 "Small interfering RNA (siRNA) biogenesis";"MicroRNA (miRNA) biogenesis" maker-scaffold3845-size238543-augustus-gene-1.11-mRNA-1 3 Reactome: R-HSA-6787450;Reactome: R-HSA-6785470;Reactome: R-HSA-8868766 "tRNA modification in the mitochondrion";"tRNA processing in the mitochondrion";"rRNA processing in the mitochondrion" maker-scaffold6787-size145612-augustus-gene-0.2-mRNA-1 5 Reactome: R-HSA-4341670;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695;Reactome: R-HSA-1660662;Reactome: R-HSA-4085001 "Defective NEU1 causes sialidosis";"MHC class II antigen presentation";"Neutrophil degranulation";"Glycosphingolipid metabolism";"Sialic acid metabolism" maker-scaffold207-size1178031-augustus-gene-5.5-mRNA-1 2 Reactome: R-HSA-909733;Reactome: R-HSA-8983711 "Interferon alpha/beta signaling";"OAS antiviral response" maker-scaffold937-size646146-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-8949215;Reactome: R-HSA-983231 "Mitochondrial calcium ion transport";"Factors involved in megakaryocyte development and platelet production" maker-scaffold664-size1019570-augustus-gene-6.1-mRNA-1 12 MetaCyc: PWY-5870;MetaCyc: PWY-5871;MetaCyc: PWY-5873;MetaCyc: PWY-5856;MetaCyc: PWY-5855;MetaCyc: PWY-6708;MetaCyc: PWY-5857;MetaCyc: PWY-5872;MetaCyc: PWY-6978;Reactome: R-HSA-2142789;Reactome: R-HSA-1268020;KEGG: 00130+2.5.1.39 "Ubiquinol-8 biosynthesis (eukaryotic)";"Ubiquinol-9 biosynthesis (eukaryotic)";"Ubiquinol-7 biosynthesis (eukaryotic)";"Ubiquinol-9 biosynthesis (prokaryotic)";"Ubiquinol-7 biosynthesis (prokaryotic)";"Ubiquinol-8 biosynthesis (prokaryotic)";"Ubiquinol-10 biosynthesis (prokaryotic)";"Ubiquinol-10 biosynthesis (eukaryotic)";"Plastoquinol-9 biosynthesis II";"Ubiquinol biosynthesis";"Mitochondrial protein import";"Ubiquinone and other terpenoid-quinone biosynthesis" maker-scaffold4538-size204480-augustus-gene-1.7-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" maker-scaffold708-size707887-augustus-gene-5.1-mRNA-1 2 Reactome: R-HSA-382556;Reactome: R-HSA-5678895 "ABC-family proteins mediated transport";"Defective CFTR causes cystic fibrosis" maker-scaffold5701-size152153-augustus-gene-0.6-mRNA-1 7 KEGG: 00380+1.11.1.6;KEGG: 00630+1.11.1.6;KEGG: 00970+6.1.1.7;Reactome: R-HSA-9615017;Reactome: R-HSA-9033241;Reactome: R-HSA-3299685;Reactome: R-HSA-6798695 "Tryptophan metabolism";"Glyoxylate and dicarboxylate metabolism";"Aminoacyl-tRNA biosynthesis";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Peroxisomal protein import";"Detoxification of Reactive Oxygen Species";"Neutrophil degranulation" maker-scaffold157-size1269135-augustus-gene-10.2-mRNA-1 1 Reactome: R-HSA-156842 "Eukaryotic Translation Elongation" maker-scaffold6256-size161052-augustus-gene-0.3-mRNA-1 2 KEGG: 00051+2.7.1.105+3.1.3.46;Reactome: R-HSA-9634600 "Fructose and mannose metabolism";"Regulation of glycolysis by fructose 2,6-bisphosphate metabolism" maker-scaffold2576-size340169-augustus-gene-2.18-mRNA-1 5 Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-77387;Reactome: R-HSA-917977 "Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Insulin receptor recycling";"Transferrin endocytosis and recycling" maker-scaffold4158-size220890-augustus-gene-0.1-mRNA-1 5 KEGG: 00520+3.2.1.14;Reactome: R-HSA-189085;MetaCyc: PWY-7822;MetaCyc: PWY-6902;MetaCyc: PWY-6855 "Amino sugar and nucleotide sugar metabolism";"Digestion of dietary carbohydrate";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Chitin degradation I (archaea)" maker-scaffold2551-size687948-augustus-gene-5.7-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold6550-size118009-augustus-gene-0.3-mRNA-1 12 Reactome: R-HSA-167290;Reactome: R-HSA-167287;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-6804756;Reactome: R-HSA-167243;Reactome: R-HSA-167246;Reactome: R-HSA-674695;Reactome: R-HSA-167200;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-112382 "Pausing and recovery of HIV elongation";"HIV elongation arrest and recovery";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Regulation of TP53 Activity through Phosphorylation";"Tat-mediated HIV elongation arrest and recovery";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Pre-transcription Events";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex" maker-scaffold3782-size241101-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-392154;KEGG: 00230+4.6.1.2;Reactome: R-HSA-445355 "Nitric oxide stimulates guanylate cyclase";"Purine metabolism";"Smooth Muscle Contraction" augustus-scaffold1223-size547223-processed-gene-1.2-mRNA-1 2 Reactome: R-HSA-2243919;Reactome: R-HSA-1566948 "Crosslinking of collagen fibrils";"Elastic fibre formation" maker-scaffold1312-size764137-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-1483166 "Synthesis of PA" maker-scaffold522-size862184-augustus-gene-1.1-mRNA-1 4 MetaCyc: PWY-6832;Reactome: R-HSA-9033241;KEGG: 00440+2.6.1.37;Reactome: R-HSA-389661 "2-aminoethylphosphonate degradation II";"Peroxisomal protein import";"Phosphonate and phosphinate metabolism";"Glyoxylate metabolism and glycine degradation" augustus-scaffold1226-size555396-processed-gene-4.0-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold1399-size886435-augustus-gene-6.3-mRNA-1 2 Reactome: R-HSA-1483191;Reactome: R-HSA-425366 "Synthesis of PC";"Transport of bile salts and organic acids, metal ions and amine compounds" maker-scaffold3204-size385560-augustus-gene-2.6-mRNA-1 8 Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380259;Reactome: R-HSA-380284;Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-380320;Reactome: R-HSA-5689880 "Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of Nlp from mitotic centrosomes";"Loss of proteins required for interphase microtubule organization from the centrosome";"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Recruitment of NuMA to mitotic centrosomes";"Ub-specific processing proteases" maker-scaffold2754-size319245-augustus-gene-1.3-mRNA-1 10 Reactome: R-HSA-8948751;Reactome: R-HSA-201688;Reactome: R-HSA-445144;Reactome: R-HSA-6814122;Reactome: R-HSA-8939243;Reactome: R-HSA-1483191;Reactome: R-HSA-6804756;Reactome: R-HSA-6798695;Reactome: R-HSA-2514853;Reactome: R-HSA-8934903 "Regulation of PTEN stability and activity";"WNT mediated activation of DVL";"Signal transduction by L1";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Synthesis of PC";"Regulation of TP53 Activity through Phosphorylation";"Neutrophil degranulation";"Condensation of Prometaphase Chromosomes";"Receptor Mediated Mitophagy" maker-scaffold869-size1142520-augustus-gene-10.7-mRNA-1 2 Reactome: R-HSA-181429;Reactome: R-HSA-212676 "Serotonin Neurotransmitter Release Cycle";"Dopamine Neurotransmitter Release Cycle" maker-scaffold7917-size82185-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold2481-size352000-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-2142691;Reactome: R-HSA-2142700 "Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Synthesis of Lipoxins (LX)" maker-scaffold1155-size558395-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-913709 "O-linked glycosylation of mucins" maker-scaffold166-size1230825-augustus-gene-9.8-mRNA-1 33 MetaCyc: PWY-5057;MetaCyc: PWY-6313;MetaCyc: PWY-5751;KEGG: 00592+1.1.1.1;KEGG: 00010+1.1.1.1;MetaCyc: PWY-1801;MetaCyc: PWY-6342;MetaCyc: PWY-5079;KEGG: 00830+1.1.1.1;KEGG: 00071+1.1.1.1;MetaCyc: PWY-5082;MetaCyc: PWY-7111;KEGG: 00680+1.1.1.284;MetaCyc: PWY-5486;Reactome: R-HSA-71384;KEGG: 00625+1.1.1.1;MetaCyc: PWY-5076;MetaCyc: PWY-7118;MetaCyc: PWY-3162;MetaCyc: PWY-5480;MetaCyc: PWY-7013;KEGG: 00350+1.1.1.1;MetaCyc: PWY-5078;MetaCyc: PWY-6587;MetaCyc: PWY-6802;MetaCyc: PWY-7396;MetaCyc: PWY-6333;MetaCyc: PWY-6871;KEGG: 00626+1.1.1.1;KEGG: 00982+1.1.1.1;MetaCyc: PWY-7798;KEGG: 00260+1.1.1.1;KEGG: 00980+1.1.1.1 "L-valine degradation II";"Serotonin degradation";"Phenylethanol biosynthesis";"alpha-Linolenic acid metabolism";"Glycolysis / Gluconeogenesis";"Formaldehyde oxidation II (glutathione-dependent)";"Noradrenaline and adrenaline degradation";"L-phenylalanine degradation III";"Retinol metabolism";"Fatty acid degradation";"L-methionine degradation III";"Pyruvate fermentation to isobutanol (engineered)";"Methane metabolism";"Pyruvate fermentation to ethanol II";"Ethanol oxidation";"Chloroalkane and chloroalkene degradation";"L-leucine degradation III";"Chitin degradation to ethanol";"L-tryptophan degradation V (side chain pathway)";"Pyruvate fermentation to ethanol I";"(S)-propane-1,2-diol degradation";"Tyrosine metabolism";"L-isoleucine degradation II";"Pyruvate fermentation to ethanol III";"Salidroside biosynthesis";"Butanol and isobutanol biosynthesis (engineered)";"Acetaldehyde biosynthesis I";"3-methylbutanol biosynthesis (engineered)";"Naphthalene degradation";"Drug metabolism - cytochrome P450";"Protein S-nitrosylation and denitrosylation";"Glycine, serine and threonine metabolism";"Metabolism of xenobiotics by cytochrome P450" maker-scaffold6450-size124902-augustus-gene-0.4-mRNA-1 7 MetaCyc: PWY-5097;MetaCyc: PWY-8088;Reactome: R-HSA-389661;KEGG: 00261+4.3.3.7;MetaCyc: PWY-2941;MetaCyc: PWY-2942;KEGG: 00300+4.3.3.7 "L-lysine biosynthesis VI";"Dipicolinate biosynthesis";"Glyoxylate metabolism and glycine degradation";"Monobactam biosynthesis";"L-lysine biosynthesis II";"L-lysine biosynthesis III";"Lysine biosynthesis" maker-scaffold2349-size502406-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold3184-size283984-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-1237044 "Erythrocytes take up carbon dioxide and release oxygen" maker-scaffold1825-size433936-augustus-gene-3.3-mRNA-1 3 Reactome: R-HSA-174403;MetaCyc: PWY-4041;KEGG: 00480+4.3.2.9 "Glutathione synthesis and recycling";"Gamma-glutamyl cycle";"Glutathione metabolism" maker-scaffold6905-size106624-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold1399-size886435-augustus-gene-6.4-mRNA-1 2 Reactome: R-HSA-425366;Reactome: R-HSA-1483191 "Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC" maker-scaffold1392-size771324-augustus-gene-6.3-mRNA-1 6 KEGG: 00564+2.7.1.107;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;MetaCyc: PWY-7039;MetaCyc: PWY-7817;KEGG: 00561+2.7.1.107 "Glycerophospholipid metabolism";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerolipid metabolism" maker-scaffold5991-size247412-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-5389840;Reactome: R-HSA-5368286;Reactome: R-HSA-5419276 "Mitochondrial translation elongation";"Mitochondrial translation initiation";"Mitochondrial translation termination" maker-scaffold7537-size92214-augustus-gene-0.0-mRNA-1 14 MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-8041;MetaCyc: PWY-7035;MetaCyc: PWY-7725;MetaCyc: PWY-7724;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-5080;MetaCyc: PWY-7601;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-5972 "Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Fatty acid elongation";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Stearate biosynthesis I (animals)" maker-scaffold3939-size237795-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-5693568;Reactome: R-HSA-6783310 "Resolution of D-loop Structures through Holliday Junction Intermediates";"Fanconi Anemia Pathway" maker-scaffold3931-size565733-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1069-size578407-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold21421-size10785-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-110357;Reactome: R-HSA-110328;Reactome: R-HSA-110329 "Displacement of DNA glycosylase by APEX1";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Cleavage of the damaged pyrimidine" maker-scaffold10055-size41445-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-9609523 "Insertion of tail-anchored proteins into the endoplasmic reticulum membrane" maker-scaffold11812-size32139-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold207-size1178031-augustus-gene-9.3-mRNA-1 3 Reactome: R-HSA-5656121;Reactome: R-HSA-110312;Reactome: R-HSA-5655862 "Translesion synthesis by POLI";"Translesion synthesis by REV1";"Translesion synthesis by POLK" maker-scaffold5497-size158099-augustus-gene-0.4-mRNA-1 182 Reactome: R-HSA-983168;Reactome: R-HSA-6804760;Reactome: R-HSA-211733;Reactome: R-HSA-6807004;Reactome: R-HSA-8939236;Reactome: R-HSA-5685942;Reactome: R-HSA-5358346;Reactome: R-HSA-3785653;Reactome: R-HSA-5362768;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-9646399;Reactome: R-HSA-532668;Reactome: R-HSA-168927;Reactome: R-HSA-205043;Reactome: R-HSA-168638;Reactome: R-HSA-917729;Reactome: R-HSA-9615710;Reactome: R-HSA-5656121;Reactome: R-HSA-180585;Reactome: R-HSA-1236382;Reactome: R-HSA-72695;Reactome: R-HSA-4608870;Reactome: R-HSA-936440;Reactome: R-HSA-110314;Reactome: R-HSA-2565942;Reactome: R-HSA-1236974;Reactome: R-HSA-5668541;Reactome: R-HSA-9633012;Reactome: R-HSA-2559585;Reactome: R-HSA-110320;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-975144;Reactome: R-HSA-1169408;Reactome: R-HSA-2691232;Reactome: R-HSA-174048;Reactome: R-HSA-168928;Reactome: R-HSA-8876493;Reactome: R-HSA-5693607;Reactome: R-HSA-937042;Reactome: R-HSA-156827;Reactome: R-HSA-8866654;Reactome: R-HSA-68827;Reactome: R-HSA-5654727;Reactome: R-HSA-5654732;Reactome: R-HSA-5696400;Reactome: R-HSA-2559582;Reactome: R-HSA-977225;Reactome: R-HSA-5696395;Reactome: R-HSA-5658442;Reactome: R-HSA-9613829;Reactome: R-HSA-209560;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-1799339;Reactome: R-HSA-174178;Reactome: R-HSA-174490;Reactome: R-HSA-975956;Reactome: R-HSA-2644606;Reactome: R-HSA-3769402;Reactome: R-HSA-450302;Reactome: R-HSA-110312;Reactome: R-HSA-8875360;Reactome: R-HSA-9645460;Reactome: R-HSA-4641257;Reactome: R-HSA-5654726;Reactome: R-HSA-9013507;Reactome: R-HSA-450321;Reactome: R-HSA-5610780;Reactome: R-HSA-445989;Reactome: R-HSA-195253;Reactome: R-HSA-6804756;Reactome: R-HSA-9636383;Reactome: R-HSA-75815;Reactome: R-HSA-1234176;Reactome: R-HSA-5656169;Reactome: R-HSA-4641263;Reactome: R-HSA-9033241;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-6782135;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-901032;Reactome: R-HSA-382556;Reactome: R-HSA-2173788;Reactome: R-HSA-2173795;Reactome: R-HSA-6782210;Reactome: R-HSA-937041;Reactome: R-HSA-68949;Reactome: R-HSA-6781827;Reactome: R-HSA-5357956;Reactome: R-HSA-69231;Reactome: R-HSA-5689603;Reactome: R-HSA-5675221;Reactome: R-HSA-5678895;Reactome: R-HSA-5689901;Reactome: R-HSA-5696394;Reactome: R-HSA-72764;Reactome: R-HSA-174084;Reactome: R-HSA-5696397;Reactome: R-HSA-8849469;Reactome: R-HSA-5607764;Reactome: R-HSA-2122947;Reactome: R-HSA-5676590;Reactome: R-HSA-69601;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-182971;Reactome: R-HSA-5205685;Reactome: R-HSA-9637628;Reactome: R-HSA-450408;Reactome: R-HSA-69541;Reactome: R-HSA-937039;Reactome: R-HSA-202424;Reactome: R-HSA-8866652;Reactome: R-HSA-5693565;Reactome: R-HSA-8939902;Reactome: R-HSA-156902;Reactome: R-HSA-8863795;Reactome: R-HSA-5610783;Reactome: R-HSA-5689877;Reactome: R-HSA-5632684;Reactome: R-HSA-9604323;Reactome: R-HSA-8856828;Reactome: R-HSA-2173796;Reactome: R-HSA-2467813;Reactome: R-HSA-175474;Reactome: R-HSA-5675482;Reactome: R-HSA-9014325;Reactome: R-HSA-1253288;Reactome: R-HSA-2894862;Reactome: R-HSA-8948747;Reactome: R-HSA-5610785;Reactome: R-HSA-2672351;Reactome: R-HSA-8854050;Reactome: R-HSA-5654733;Reactome: R-HSA-6783310;Reactome: R-HSA-201681;Reactome: R-HSA-162588;Reactome: R-HSA-2979096;Reactome: R-HSA-5687128;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-912631;Reactome: R-HSA-975110;Reactome: R-HSA-8951664;Reactome: R-HSA-937072;Reactome: R-HSA-5689896;Reactome: R-HSA-5357905;Reactome: R-HSA-5655862;Reactome: R-HSA-179409;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-3134975;Reactome: R-HSA-72702;Reactome: R-HSA-5607761;Reactome: R-HSA-1358803;Reactome: R-HSA-2559580;Reactome: R-HSA-3322077;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-9013973;Reactome: R-HSA-917937;Reactome: R-HSA-400253;Reactome: R-HSA-8856825;Reactome: R-HSA-2173791;Reactome: R-HSA-975163;Reactome: R-HSA-6804757;Reactome: R-HSA-5684264;Reactome: R-HSA-2122948;Reactome: R-HSA-8948751;Reactome: R-HSA-174113;Reactome: R-HSA-6781823;Reactome: R-HSA-209543;Reactome: R-HSA-1169091;Reactome: R-HSA-1295596;Reactome: R-HSA-174184;Reactome: R-HSA-936964;Reactome: R-HSA-2871837 "Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of TP53 Activity through Methylation";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Negative regulation of MET activity";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"HDR through Homologous Recombination (HRR)";"Hedgehog ligand biogenesis";"Myoclonic epilepsy of Lafora";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Aggrephagy";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"TICAM1, RIP1-mediated IKK complex recruitment";"NRIF signals cell death from the nucleus";"NOD1/2 Signaling Pathway";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Late endosomal microautophagy";"Translesion synthesis by POLI";"Vif-mediated degradation of APOBEC3G";"Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants";"Formation of the ternary complex, and subsequently, the 43S complex";"Asymmetric localization of PCP proteins";"Negative regulators of DDX58/IFIH1 signaling";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of PLK1 Activity at G2/M Transition";"ER-Phagosome pathway";"TNFR2 non-canonical NF-kB pathway";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Oncogene Induced Senescence";"Translesion Synthesis by POLH";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation";"ISG15 antiviral mechanism";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"APC/C:Cdc20 mediated degradation of Cyclin B";"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"InlA-mediated entry of Listeria monocytogenes into host cells";"Processing of DNA double-strand break ends";"IRAK2 mediated activation of TAK1 complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"E3 ubiquitin ligases ubiquitinate target proteins";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of FGFR2 signaling";"Negative regulation of FGFR3 signaling";"Dual Incision in GG-NER";"Senescence-Associated Secretory Phenotype (SASP)";"Amyloid fiber formation";"Formation of Incision Complex in GG-NER";"Regulation of RAS by GAPs";"Chaperone Mediated Autophagy";"NF-kB is activated and signals survival";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"SRP-dependent cotranslational protein targeting to membrane";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Membrane binding and targetting of GAG proteins";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Deactivation of the beta-catenin transactivating complex";"activated TAK1 mediates p38 MAPK activation";"Translesion synthesis by REV1";"InlB-mediated entry of Listeria monocytogenes into host cell";"Alpha-protein kinase 1 signaling pathway";"Degradation of AXIN";"Negative regulation of FGFR1 signaling";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1";"Degradation of GLI1 by the proteasome";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"Degradation of beta-catenin by the destruction complex";"Regulation of TP53 Activity through Phosphorylation";"Prevention of phagosomal-lysosomal fusion";"Ubiquitin-dependent degradation of Cyclin D";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Termination of translesion DNA synthesis";"Regulation of FZD by ubiquitination";"Peroxisomal protein import";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Dual incision in TC-NER";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"ER Quality Control Compartment (ERQC)";"ABC-family proteins mediated transport";"Downregulation of TGF-beta receptor signaling";"Downregulation of SMAD2/3:SMAD4 transcriptional activity";"Gap-filling DNA repair synthesis and ligation in TC-NER";"IKK complex recruitment mediated by RIP1";"Orc1 removal from chromatin";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"TNFR1-induced NFkappaB signaling pathway";"Cyclin D associated events in G1";"UCH proteinases";"Negative regulation of MAPK pathway";"Defective CFTR causes cystic fibrosis";"Metalloprotease DUBs";"DNA Damage Recognition in GG-NER";"Eukaryotic Translation Termination";"Autodegradation of Cdh1 by Cdh1:APC/C";"Gap-filling DNA repair synthesis and ligation in GG-NER";"PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1";"CLEC7A (Dectin-1) signaling";"NOTCH1 Intracellular Domain Regulates Transcription";"NIK-->noncanonical NF-kB signaling";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"EGFR downregulation";"Pink/Parkin Mediated Mitophagy";"Modulation by Mtb of host immune system";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Stabilization of p53";"IRAK1 recruits IKK complex";"Downstream TCR signaling";"Synthesis of active ubiquitin: roles of E1 and E2 enzymes";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Regulation of RUNX2 expression and activity";"Peptide chain elongation";"Downregulation of ERBB2 signaling";"Degradation of GLI2 by the proteasome";"Josephin domain DUBs";"Hedgehog 'on' state";"Negative regulation of NOTCH4 signaling";"Clathrin-mediated endocytosis";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Separation of Sister Chromatids";"Assembly Of The HIV Virion";"Regulation of necroptotic cell death";"TICAM1,TRAF6-dependent induction of TAK1 complex";"Downregulation of ERBB4 signaling";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Regulation of PTEN localization";"GLI3 is processed to GLI3R by the proteasome";"Stimuli-sensing channels";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Negative regulation of FGFR4 signaling";"Fanconi Anemia Pathway";"TCF dependent signaling in response to WNT";"Budding and maturation of HIV virion";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"MAPK6/MAPK4 signaling";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"Regulation of signaling by CBL";"TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling";"Neddylation";"TRAF6-mediated induction of TAK1 complex within TLR4 complex";"Ovarian tumor domain proteases";"Regulation of TNFR1 signaling";"Translesion synthesis by POLK";"APC-Cdc20 mediated degradation of Nek2A";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"Regulation of innate immune responses to cytosolic DNA";"Ribosomal scanning and start codon recognition";"Dectin-1 mediated noncanonical NF-kB signaling";"Downregulation of ERBB2:ERBB3 signaling";"Oxidative Stress Induced Senescence";"Glycogen synthesis";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"TICAM1-dependent activation of IRF3/IRF7";"Iron uptake and transport";"Circadian Clock";"Cargo recognition for clathrin-mediated endocytosis";"TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)";"IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation";"Regulation of TP53 Degradation";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Activated NOTCH1 Transmits Signal to the Nucleus";"Regulation of PTEN stability and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Formation of TC-NER Pre-Incision Complex";"p75NTR recruits signalling complexes";"Activation of NF-kappaB in B cells";"Spry regulation of FGF signaling";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon";"FCERI mediated NF-kB activation" maker-scaffold896-size634866-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-5689880;Reactome: R-HSA-1632852 "Ub-specific processing proteases";"Macroautophagy" maker-scaffold238-size1772184-augustus-gene-3.2-mRNA-1 9 MetaCyc: PWY-5743;MetaCyc: PWY-6142;MetaCyc: PWY-7115;MetaCyc: PWY-7117;KEGG: 00910+4.2.1.1;Reactome: R-HSA-1475029;MetaCyc: PWY-5744;MetaCyc: PWY-241;MetaCyc: PWY-5789 "3-hydroxypropanoate cycle";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Nitrogen metabolism";"Reversible hydration of carbon dioxide";"Glyoxylate assimilation";"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle" maker-scaffold1325-size520137-augustus-gene-4.3-mRNA-1 3 KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16 "Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway" maker-scaffold10351-size38533-augustus-gene-0.5-mRNA-1 3 KEGG: 00740+3.1.3.2;KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348 "Riboflavin metabolism";"Thiamine metabolism";"Phosphate acquisition" maker-scaffold503-size842511-augustus-gene-3.2-mRNA-1 2 Reactome: R-HSA-8939243;Reactome: R-HSA-3214858 "RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines" maker-scaffold261-size1668889-augustus-gene-6.3-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold576-size780973-augustus-gene-2.5-mRNA-1 3 Reactome: R-HSA-6785470;Reactome: R-HSA-6784531;Reactome: R-HSA-8868766 "tRNA processing in the mitochondrion";"tRNA processing in the nucleus";"rRNA processing in the mitochondrion" augustus-scaffold2821-size315534-processed-gene-2.1-mRNA-1 6 Reactome: R-HSA-9640463;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884 "Wax biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I" maker-scaffold7475-size92788-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-6790901 "rRNA modification in the nucleus and cytosol" maker-scaffold4180-size217122-augustus-gene-1.5-mRNA-1 3 Reactome: R-HSA-5389840;Reactome: R-HSA-5368286;Reactome: R-HSA-5419276 "Mitochondrial translation elongation";"Mitochondrial translation initiation";"Mitochondrial translation termination" augustus-scaffold1578-size470774-processed-gene-1.0-mRNA-1 6 Reactome: R-HSA-68949;Reactome: R-HSA-68867;Reactome: R-HSA-176974;Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68962 "Orc1 removal from chromatin";"Assembly of the pre-replicative complex";"Unwinding of DNA";"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Activation of the pre-replicative complex" maker-scaffold4968-size180140-augustus-gene-0.3-mRNA-1 3 Reactome: R-HSA-2022854;Reactome: R-HSA-5083627;Reactome: R-HSA-5173105 "Keratan sulfate biosynthesis";"Defective LARGE causes MDDGA6 and MDDGB6";"O-linked glycosylation" maker-scaffold11334-size34671-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" augustus-scaffold6187-size135501-processed-gene-0.1-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72702 "GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition" maker-scaffold1633-size589899-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold5048-size239644-augustus-gene-1.2-mRNA-1 11 Reactome: R-HSA-6782135;Reactome: R-HSA-5696400;Reactome: R-HSA-5651801;Reactome: R-HSA-174430;Reactome: R-HSA-68962;Reactome: R-HSA-5656169;Reactome: R-HSA-68952;Reactome: R-HSA-5696397;Reactome: R-HSA-5685942;Reactome: R-HSA-6782210;Reactome: R-HSA-110314 "Dual incision in TC-NER";"Dual Incision in GG-NER";"PCNA-Dependent Long Patch Base Excision Repair";"Telomere C-strand synthesis initiation";"Activation of the pre-replicative complex";"Termination of translesion DNA synthesis";"DNA replication initiation";"Gap-filling DNA repair synthesis and ligation in GG-NER";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Recognition of DNA damage by PCNA-containing replication complex" maker-scaffold261-size1668889-augustus-gene-4.4-mRNA-1 7 Reactome: R-HSA-2644606;Reactome: R-HSA-2660826;Reactome: R-HSA-1442490;Reactome: R-HSA-2894862;Reactome: R-HSA-2122948;Reactome: R-HSA-177929;Reactome: R-HSA-2691232 "Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Collagen degradation";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Activated NOTCH1 Transmits Signal to the Nucleus";"Signaling by EGFR";"Constitutive Signaling by NOTCH1 HD Domain Mutants" maker-scaffold160-size1280976-augustus-gene-3.5-mRNA-1 6 MetaCyc: PWY-3341;Reactome: R-HSA-8964539;MetaCyc: PWY-4981;MetaCyc: PWY-6344;KEGG: 00330+2.6.1.13;MetaCyc: PWY-6922 "L-proline biosynthesis III (from L-ornithine)";"Glutamate and glutamine metabolism";"L-proline biosynthesis II (from arginine)";"L-ornithine degradation II (Stickland reaction)";"Arginine and proline metabolism";"L-Ndelta-acetylornithine biosynthesis" maker-scaffold367-size939931-augustus-gene-1.0-mRNA-1 13 Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-2408557;Reactome: R-HSA-975956 "Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" augustus-scaffold3937-size233478-processed-gene-1.3-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold2251-size384959-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-167827;Reactome: R-HSA-167826 "The proton buffering model";"The fatty acid cycling model" maker-scaffold293-size1005519-augustus-gene-9.1-mRNA-1 5 Reactome: R-HSA-2132295;Reactome: R-HSA-6798695;Reactome: R-HSA-3371497;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878 "MHC class II antigen presentation";"Neutrophil degranulation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold3436-size263631-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold2158-size385011-augustus-gene-2.7-mRNA-1 1 KEGG: 00480+3.4.11.1 "Glutathione metabolism" maker-scaffold1332-size524712-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold166-size1230825-augustus-gene-8.2-mRNA-1 2 Reactome: R-HSA-72163;Reactome: R-HSA-72165 "mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway" maker-scaffold7801-size88527-augustus-gene-0.1-mRNA-1 6 MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884;Reactome: R-HSA-9640463;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733 "Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Wax biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis" maker-scaffold6121-size137290-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-176974 "Unwinding of DNA" maker-scaffold7184-size162086-augustus-gene-0.7-mRNA-1 7 MetaCyc: PWY-5941;Reactome: R-HSA-6798695;MetaCyc: PWY-6737;KEGG: 00500+2.4.1.25;MetaCyc: PWY-7238;MetaCyc: PWY-6724;Reactome: R-HSA-70221 "Glycogen degradation II";"Neutrophil degranulation";"Starch degradation V";"Starch and sucrose metabolism";"Sucrose biosynthesis II";"Starch degradation II";"Glycogen breakdown (glycogenolysis)" augustus-scaffold1258-size535493-processed-gene-4.1-mRNA-1 1 Reactome: R-HSA-5626467 "RHO GTPases activate IQGAPs" augustus-scaffold2705-size325694-processed-gene-1.1-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold3843-size237991-augustus-gene-1.6-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold2691-size760543-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-71064 "Lysine catabolism" maker-scaffold1162-size558189-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold1754-size444664-augustus-gene-2.1-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" augustus-scaffold21064-size12670-processed-gene-0.0-mRNA-1 6 Reactome: R-HSA-6798695;KEGG: 00380+1.11.1.6;KEGG: 00630+1.11.1.6;Reactome: R-HSA-9033241;Reactome: R-HSA-9615017;Reactome: R-HSA-3299685 "Neutrophil degranulation";"Tryptophan metabolism";"Glyoxylate and dicarboxylate metabolism";"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Detoxification of Reactive Oxygen Species" maker-scaffold3632-size254775-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-6807878;Reactome: R-HSA-6811434 "COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold448-size871759-augustus-gene-5.2-mRNA-1 13 Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-72764 "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Eukaryotic Translation Termination" maker-scaffold811-size664638-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold4932-size189604-augustus-gene-0.7-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold325-size972641-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-2564830 "Cytosolic iron-sulfur cluster assembly" maker-scaffold140-size1308806-augustus-gene-8.3-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" augustus-scaffold7552-size90079-processed-gene-0.1-mRNA-1 6 KEGG: 00670+2.1.2.3;Reactome: R-HSA-73817;MetaCyc: PWY-6124;MetaCyc: PWY-6123;MetaCyc: PWY-7234;KEGG: 00230+3.5.4.10+2.1.2.3 "One carbon pool by folate";"Purine ribonucleoside monophosphate biosynthesis";"Inosine-5'-phosphate biosynthesis II";"Inosine-5'-phosphate biosynthesis I";"Inosine-5'-phosphate biosynthesis III";"Purine metabolism" maker-scaffold5306-size164544-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-419771 "Opsins" maker-scaffold1667-size456438-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold821-size665406-augustus-gene-3.1-mRNA-1 1 KEGG: 00970+6.1.1.9 "Aminoacyl-tRNA biosynthesis" maker-scaffold841-size662022-augustus-gene-3.2-mRNA-1 4 Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878 "MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold49209-size11693-augustus-gene-0.1-mRNA-1 8 KEGG: 00051+2.7.1.1;KEGG: 00052+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00520+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00500+2.7.1.1 "Fructose and mannose metabolism";"Galactose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Streptomycin biosynthesis";"Glycolysis / Gluconeogenesis";"Amino sugar and nucleotide sugar metabolism";"Glycolysis";"Starch and sucrose metabolism" maker-scaffold1308-size523707-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold3703-size250683-augustus-gene-1.9-mRNA-1 27 Reactome: R-HSA-168325;Reactome: R-HSA-4085377;Reactome: R-HSA-180910;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-3371453;Reactome: R-HSA-5578749;Reactome: R-HSA-159230;Reactome: R-HSA-159227;Reactome: R-HSA-9609690;Reactome: R-HSA-191859;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-168333;Reactome: R-HSA-3232142;Reactome: R-HSA-1169408;Reactome: R-HSA-4615885;Reactome: R-HSA-159236;Reactome: R-HSA-168271 "Viral Messenger RNA Synthesis";"SUMOylation of SUMOylation proteins";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Regulation of HSF1-mediated heat shock response";"Transcriptional regulation by small RNAs";"Transport of the SLBP Dependant Mature mRNA";"Transport of the SLBP independent Mature mRNA";"HCMV Early Events";"snRNP Assembly";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of ubiquitinylation proteins";"ISG15 antiviral mechanism";"SUMOylation of DNA replication proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus" maker-scaffold282-size1020917-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" maker-scaffold4462-size205467-augustus-gene-1.3-mRNA-1 2 Reactome: R-HSA-5628897;Reactome: R-HSA-611105 "TP53 Regulates Metabolic Genes";"Respiratory electron transport" augustus-scaffold820-size672882-processed-gene-1.1-mRNA-1 28 Reactome: R-HSA-912446;Reactome: R-HSA-110314;Reactome: R-HSA-174437;Reactome: R-HSA-69473;Reactome: R-HSA-5685942;Reactome: R-HSA-5696397;Reactome: R-HSA-5358606;Reactome: R-HSA-5656169;Reactome: R-HSA-6783310;Reactome: R-HSA-5693616;Reactome: R-HSA-68962;Reactome: R-HSA-5656121;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-5696400;Reactome: R-HSA-3371453;Reactome: R-HSA-6804756;Reactome: R-HSA-110312;Reactome: R-HSA-69166;Reactome: R-HSA-5693607;Reactome: R-HSA-6782210;Reactome: R-HSA-110320;Reactome: R-HSA-5358565;Reactome: R-HSA-3371511;Reactome: R-HSA-176187;Reactome: R-HSA-6782135;Reactome: R-HSA-5655862;Reactome: R-HSA-5651801 "Meiotic recombination";"Recognition of DNA damage by PCNA-containing replication complex";"Removal of the Flap Intermediate from the C-strand";"G2/M DNA damage checkpoint";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Termination of translesion DNA synthesis";"Fanconi Anemia Pathway";"Presynaptic phase of homologous DNA pairing and strand exchange";"Activation of the pre-replicative complex";"Translesion synthesis by POLI";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Dual Incision in GG-NER";"Regulation of HSF1-mediated heat shock response";"Regulation of TP53 Activity through Phosphorylation";"Translesion synthesis by REV1";"Removal of the Flap Intermediate";"Processing of DNA double-strand break ends";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Translesion Synthesis by POLH";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"HSF1 activation";"Activation of ATR in response to replication stress";"Dual incision in TC-NER";"Translesion synthesis by POLK";"PCNA-Dependent Long Patch Base Excision Repair" maker-scaffold186-size1180337-augustus-gene-3.7-mRNA-1 3 Reactome: R-HSA-975577;Reactome: R-HSA-913709;Reactome: R-HSA-2022854 "N-Glycan antennae elongation";"O-linked glycosylation of mucins";"Keratan sulfate biosynthesis" maker-scaffold5234-size167424-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-383280 "Nuclear Receptor transcription pathway" maker-scaffold3675-size245916-augustus-gene-1.2-mRNA-1 2 Reactome: R-HSA-8856825;Reactome: R-HSA-8856828 "Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis" maker-scaffold5091-size242045-augustus-gene-1.4-mRNA-1 3 MetaCyc: PWY-6807;Reactome: R-HSA-6798695;KEGG: 00511+3.2.1.51 "Xyloglucan degradation II (exoglucanase)";"Neutrophil degranulation";"Other glycan degradation" maker-scaffold425-size886407-augustus-gene-7.6-mRNA-1 4 Reactome: R-HSA-73856;Reactome: R-HSA-72163;Reactome: R-HSA-159236;Reactome: R-HSA-72187 "RNA Polymerase II Transcription Termination";"mRNA Splicing - Major Pathway";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing" maker-scaffold5021-size293279-augustus-gene-1.7-mRNA-1 5 Reactome: R-HSA-1989781;Reactome: R-HSA-9614657;Reactome: R-HSA-2426168;Reactome: R-HSA-380994;Reactome: R-HSA-381183 "PPARA activates gene expression";"FOXO-mediated transcription of cell death genes";"Activation of gene expression by SREBF (SREBP)";"ATF4 activates genes in response to endoplasmic reticulum stress";"ATF6 (ATF6-alpha) activates chaperone genes" augustus-scaffold6556-size121968-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-430039;Reactome: R-HSA-72163 "mRNA decay by 5' to 3' exoribonuclease";"mRNA Splicing - Major Pathway" maker-scaffold7051-size124742-augustus-gene-0.1-mRNA-1 3 MetaCyc: PWY-7888;Reactome: R-HSA-6782315;MetaCyc: PWY-6829 "Trna-uridine 2-thiolation (cytoplasmic)";"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)" maker-scaffold207-size1178031-augustus-gene-5.4-mRNA-1 6 Reactome: R-HSA-68949;Reactome: R-HSA-68867;Reactome: R-HSA-176974;Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68962 "Orc1 removal from chromatin";"Assembly of the pre-replicative complex";"Unwinding of DNA";"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Activation of the pre-replicative complex" augustus-scaffold218-size1199926-processed-gene-3.1-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-5689880 "Protein ubiquitination";"Ub-specific processing proteases" augustus-scaffold547-size790032-processed-gene-6.2-mRNA-1 20 Reactome: R-HSA-5685942;Reactome: R-HSA-5696397;Reactome: R-HSA-5656169;Reactome: R-HSA-110314;Reactome: R-HSA-69473;Reactome: R-HSA-69091;Reactome: R-HSA-5685938;Reactome: R-HSA-5696400;Reactome: R-HSA-6804756;Reactome: R-HSA-5693616;Reactome: R-HSA-5656121;Reactome: R-HSA-6782210;Reactome: R-HSA-110312;Reactome: R-HSA-5693607;Reactome: R-HSA-176187;Reactome: R-HSA-5655862;Reactome: R-HSA-6782135;Reactome: R-HSA-5651801;Reactome: R-HSA-174411;Reactome: R-HSA-110320 "HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Termination of translesion DNA synthesis";"Recognition of DNA damage by PCNA-containing replication complex";"G2/M DNA damage checkpoint";"Polymerase switching";"HDR through Single Strand Annealing (SSA)";"Dual Incision in GG-NER";"Regulation of TP53 Activity through Phosphorylation";"Presynaptic phase of homologous DNA pairing and strand exchange";"Translesion synthesis by POLI";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Translesion synthesis by REV1";"Processing of DNA double-strand break ends";"Activation of ATR in response to replication stress";"Translesion synthesis by POLK";"Dual incision in TC-NER";"PCNA-Dependent Long Patch Base Excision Repair";"Polymerase switching on the C-strand of the telomere";"Translesion Synthesis by POLH" maker-scaffold2022-size402329-augustus-gene-3.4-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" maker-scaffold2841-size314042-augustus-gene-2.4-mRNA-1 5 Reactome: R-HSA-9610379;Reactome: R-HSA-9615710;Reactome: R-HSA-917729;Reactome: R-HSA-162588;Reactome: R-HSA-174490 "HCMV Late Events";"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Budding and maturation of HIV virion";"Membrane binding and targetting of GAG proteins" maker-scaffold2698-size326416-augustus-gene-2.6-mRNA-1 2 Reactome: R-HSA-5689603;Reactome: R-HSA-5689880 "UCH proteinases";"Ub-specific processing proteases" maker-scaffold3628-size251978-augustus-gene-1.3-mRNA-1 2 MetaCyc: PWY-6854;Reactome: R-HSA-3299685 "Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species" maker-scaffold7054-size106954-augustus-gene-0.5-mRNA-1 15 Reactome: R-HSA-2559585;Reactome: R-HSA-2559580;Reactome: R-HSA-9018519;Reactome: R-HSA-1912408;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-8943723;Reactome: R-HSA-9029569;Reactome: R-HSA-8948700;Reactome: R-HSA-4086398;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8934593;Reactome: R-HSA-8853884;Reactome: R-HSA-8936459 "Oncogene Induced Senescence";"Oxidative Stress Induced Senescence";"Estrogen-dependent gene expression";"Pre-NOTCH Transcription and Translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Regulation of PTEN mRNA translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Ca2+ pathway";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Regulation of RUNX1 Expression and Activity";"Transcriptional Regulation by VENTX";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function" maker-scaffold7452-size109389-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-6799198;Reactome: R-HSA-611105 "Complex I biogenesis";"Respiratory electron transport" maker-scaffold207-size1178031-augustus-gene-10.4-mRNA-1 1 Reactome: R-HSA-6784531 "tRNA processing in the nucleus" maker-scaffold512-size831310-augustus-gene-7.2-mRNA-1 6 MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884;Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84 "Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I";"Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis" maker-scaffold2691-size760543-augustus-gene-6.10-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold8958-size61950-augustus-gene-0.4-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" maker-scaffold1083-size585250-augustus-gene-1.1-mRNA-1 14 MetaCyc: PWY-7036;Reactome: R-HSA-75876;MetaCyc: PWY-7725;MetaCyc: PWY-7035;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7724;MetaCyc: PWY-7602;MetaCyc: PWY-7619;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-7601;MetaCyc: PWY-5080;MetaCyc: PWY-5972 "Very long chain fatty acid biosynthesis II";"Synthesis of very long-chain fatty acyl-CoAs";"Arachidonate biosynthesis V (8-detaturase, mammals)";"(9Z)-tricosene biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Juniperonate biosynthesis";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Stearate biosynthesis I (animals)" maker-scaffold1734-size448135-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold998-size601824-augustus-gene-4.5-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" maker-scaffold331-size1181569-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-8873719;Reactome: R-HSA-6803205 "RAB geranylgeranylation";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain" augustus-scaffold8876-size62635-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-9639288 "Amino acids regulate mTORC1" maker-scaffold1797-size437762-augustus-gene-3.7-mRNA-1 2 MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4 "Cellulose degradation II (fungi)";"Starch and sucrose metabolism" maker-scaffold1356-size516762-augustus-gene-3.1-mRNA-1 3 Reactome: R-HSA-74217;KEGG: 00230+2.7.1.20;MetaCyc: PWY-6619 "Purine salvage";"Purine metabolism";"Adenine and adenosine salvage VI" maker-scaffold173-size1403081-augustus-gene-10.2-mRNA-1 2 Reactome: R-HSA-1660662;Reactome: R-HSA-390471 "Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis" augustus-scaffold3615-size249226-processed-gene-1.5-mRNA-1 1 KEGG: 00230+4.6.1.2 "Purine metabolism" maker-scaffold1740-size446358-augustus-gene-3.4-mRNA-1 3 MetaCyc: PWY-7533;Reactome: R-HSA-5423646;Reactome: R-HSA-2142691 "Gliotoxin biosynthesis";"Aflatoxin activation and detoxification";"Synthesis of Leukotrienes (LT) and Eoxins (EX)" maker-scaffold591-size761504-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-9037629 "Lewis blood group biosynthesis" maker-scaffold4558-size201042-augustus-gene-1.2-mRNA-1 4 Reactome: R-HSA-5663213;Reactome: R-HSA-3928662;Reactome: R-HSA-8856828;Reactome: R-HSA-2029482 "RHO GTPases Activate WASPs and WAVEs";"EPHB-mediated forward signaling";"Clathrin-mediated endocytosis";"Regulation of actin dynamics for phagocytic cup formation" maker-scaffold1598-size471385-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-71403 "Citric acid cycle (TCA cycle)" maker-scaffold111-size1895004-augustus-gene-9.5-mRNA-1 6 Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72706 "Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit" augustus-scaffold396-size914969-processed-gene-8.0-mRNA-1 1 Reactome: R-HSA-5620924 "Intraflagellar transport" maker-scaffold8434-size70241-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-5657562;KEGG: 00051+2.7.1.3;Reactome: R-HSA-70350 "Essential fructosuria";"Fructose and mannose metabolism";"Fructose catabolism" maker-scaffold120-size1377678-augustus-gene-11.3-mRNA-1 2 Reactome: R-HSA-3238698;Reactome: R-HSA-373080 "WNT ligand biogenesis and trafficking";"Class B/2 (Secretin family receptors)" maker-scaffold1732-size772296-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-427975 "Proton/oligopeptide cotransporters" maker-scaffold2356-size362695-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold5517-size157105-augustus-gene-0.3-mRNA-1 17 Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-6790901;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-72702 "Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"rRNA modification in the nucleus and cytosol";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition" augustus-scaffold291-size1197116-processed-gene-4.2-mRNA-1 2 Reactome: R-HSA-8876198;Reactome: R-HSA-204005 "RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport" maker-scaffold2198-size381147-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-429947;Reactome: R-HSA-6804115 "Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" maker-scaffold2378-size361371-augustus-gene-2.9-mRNA-1 10 KEGG: 00430+2.3.2.2;MetaCyc: PWY-4061;MetaCyc: PWY-6842;MetaCyc: PWY-4041;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-5826;KEGG: 00460+2.3.2.2;MetaCyc: PWY-8001;MetaCyc: PWY-7559;MetaCyc: PWY-7112 "Taurine and hypotaurine metabolism";"Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II";"Gamma-glutamyl cycle";"Glutathione metabolism";"Hypoglycin biosynthesis";"Cyanoamino acid metabolism";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Glutathione degradation (DUG pathway";"4-hydroxy-2-nonenal detoxification" augustus-scaffold1281-size527723-processed-gene-1.2-mRNA-1 22 KEGG: 00010+5.3.1.9;Reactome: R-HSA-70171;MetaCyc: PWY-621;Reactome: R-HSA-5628897;MetaCyc: PWY-7347;MetaCyc: PWY-8013;KEGG: 00520+5.3.1.9;MetaCyc: PWY-3801;MetaCyc: PWY-5514;MetaCyc: PWY-5384;MetaCyc: PWY-6992;KEGG: 00030+5.3.1.9;KEGG: 00500+5.3.1.9;MetaCyc: PWY-622;MetaCyc: PWY-7238;MetaCyc: PWY-5054;Reactome: R-HSA-70263;MetaCyc: PWY-6142;MetaCyc: PWY-7385;Reactome: R-HSA-6798695;MetaCyc: PWY-6981;MetaCyc: PWY-5659 "Glycolysis / Gluconeogenesis";"Glycolysis";"Sucrose degradation III (sucrose invertase)";"TP53 Regulates Metabolic Genes";"Sucrose biosynthesis III";"UDP-N-acetyl-D-galactosamine biosynthesis III";"Amino sugar and nucleotide sugar metabolism";"Sucrose degradation II (sucrose synthase)";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Sucrose degradation IV (sucrose phosphorylase)";"1,5-anhydrofructose degradation";"Pentose phosphate pathway";"Starch and sucrose metabolism";"Starch biosynthesis";"Sucrose biosynthesis II";"D-sorbitol biosynthesis I";"Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"1,3-propanediol biosynthesis (engineered)";"Neutrophil degranulation";"Chitin biosynthesis";"GDP-mannose biosynthesis" maker-scaffold2780-size315975-augustus-gene-2.6-mRNA-1 5 Reactome: R-HSA-72163;Reactome: R-HSA-159231;Reactome: R-HSA-72187;Reactome: R-HSA-77595;Reactome: R-HSA-73856 "mRNA Splicing - Major Pathway";"Transport of Mature mRNA Derived from an Intronless Transcript";"mRNA 3'-end processing";"Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination" maker-scaffold487-size840725-augustus-gene-7.5-mRNA-1 6 MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463 "Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis" maker-scaffold163-size1242018-augustus-gene-11.5-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold210-size1121378-augustus-gene-9.6-mRNA-1 2 Reactome: R-HSA-70171;Reactome: R-HSA-70263 "Glycolysis";"Gluconeogenesis" maker-scaffold1590-size464030-augustus-gene-3.5-mRNA-1 8 KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1 "Thermogenesis";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Signaling by Hippo";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Human papillomavirus infection" augustus-scaffold7535-size178174-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-390522 "Striated Muscle Contraction" maker-scaffold3041-size294665-augustus-gene-1.4-mRNA-1 12 KEGG: 00040+2.7.7.9;KEGG: 00520+2.7.7.9;MetaCyc: PWY-7238;KEGG: 00052+2.7.7.9;Reactome: R-HSA-3322077;MetaCyc: PWY-7817;Reactome: R-HSA-173599;MetaCyc: PWY-6527;MetaCyc: PWY-3801;KEGG: 00561+2.7.7.9;MetaCyc: PWY-7343;KEGG: 00500+2.7.7.9 "Pentose and glucuronate interconversions";"Amino sugar and nucleotide sugar metabolism";"Sucrose biosynthesis II";"Galactose metabolism";"Glycogen synthesis";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Formation of the active cofactor, UDP-glucuronate";"Stachyose degradation";"Sucrose degradation II (sucrose synthase)";"Glycerolipid metabolism";"UDP-alpha-D-glucose biosynthesis I";"Starch and sucrose metabolism" maker-scaffold1435-size1006184-augustus-gene-7.1-mRNA-1 1 Reactome: R-HSA-427652 "Sodium-coupled phosphate cotransporters" maker-scaffold4605-size197990-augustus-gene-0.2-mRNA-1 32 Reactome: R-HSA-167238;Reactome: R-HSA-112382;Reactome: R-HSA-167246;Reactome: R-HSA-167243;Reactome: R-HSA-168325;Reactome: R-HSA-167152;Reactome: R-HSA-73776;Reactome: R-HSA-75955;Reactome: R-HSA-167287;Reactome: R-HSA-72165;Reactome: R-HSA-72163;Reactome: R-HSA-167200;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-6803529;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-6796648;Reactome: R-HSA-76042;Reactome: R-HSA-8851708;Reactome: R-HSA-72203;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167160;Reactome: R-HSA-167162;Reactome: R-HSA-167290;Reactome: R-HSA-6807505;Reactome: R-HSA-674695;Reactome: R-HSA-167242;Reactome: R-HSA-167172;Reactome: R-HSA-73779;Reactome: R-HSA-9018519 "Pausing and recovery of Tat-mediated HIV elongation";"Formation of RNA Pol II elongation complex";"Tat-mediated elongation of the HIV-1 transcript";"Tat-mediated HIV elongation arrest and recovery";"Viral Messenger RNA Synthesis";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Elongation";"HIV elongation arrest and recovery";"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Signaling by FGFR2 IIIa TM";"Processing of Capped Intron-Containing Pre-mRNA";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II HIV Promoter Escape";"Pausing and recovery of HIV elongation";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Transcription of the HIV genome";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Estrogen-dependent gene expression" maker-scaffold1781-size696304-augustus-gene-4.1-mRNA-1 2 Reactome: R-HSA-5689603;Reactome: R-HSA-5696394 "UCH proteinases";"DNA Damage Recognition in GG-NER" maker-scaffold736-size696701-augustus-gene-5.4-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" augustus-scaffold5401-size307008-processed-gene-2.2-mRNA-1 3 Reactome: R-HSA-73621;Reactome: R-HSA-196807;Reactome: R-HSA-74259 "Pyrimidine catabolism";"Nicotinate metabolism";"Purine catabolism" maker-scaffold2082-size396329-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-983189;Reactome: R-HSA-6811434 "Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold5236-size168563-augustus-gene-0.6-mRNA-1 1 Reactome: R-HSA-6784531 "tRNA processing in the nucleus" maker-scaffold3465-size273861-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-432047 "Passive transport by Aquaporins" maker-scaffold3141-size286694-augustus-gene-1.7-mRNA-1 3 Reactome: R-HSA-379716;Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.19 "Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis" maker-scaffold1718-size592992-augustus-gene-4.5-mRNA-1 3 KEGG: 00730+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2 "Thiamine metabolism";"Phosphate acquisition";"Riboflavin metabolism" maker-scaffold241-size1969003-augustus-gene-15.5-mRNA-1 3 MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2;KEGG: 00740+3.1.3.2 "Phosphate acquisition";"Thiamine metabolism";"Riboflavin metabolism" maker-scaffold773-size679954-augustus-gene-5.7-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold2969-size341277-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-433137 "Sodium-coupled sulphate, di- and tri-carboxylate transporters" maker-scaffold1363-size513098-augustus-gene-1.3-mRNA-1 7 Reactome: R-HSA-5362517;KEGG: 00620+1.2.4.1;KEGG: 00010+1.2.4.1;Reactome: R-HSA-389661;KEGG: 00020+1.2.4.1;Reactome: R-HSA-204174;Reactome: R-HSA-70268 "Signaling by Retinoic Acid";"Pyruvate metabolism";"Glycolysis / Gluconeogenesis";"Glyoxylate metabolism and glycine degradation";"Citrate cycle (TCA cycle)";"Regulation of pyruvate dehydrogenase (PDH) complex";"Pyruvate metabolism" augustus-scaffold597-size759082-processed-gene-6.0-mRNA-1 2 Reactome: R-HSA-189085;KEGG: 00500+3.2.1.28 "Digestion of dietary carbohydrate";"Starch and sucrose metabolism" maker-scaffold2278-size368694-augustus-gene-2.3-mRNA-1 2 Reactome: R-HSA-3214858;Reactome: R-HSA-8939243 "RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known" maker-scaffold962-size610330-augustus-gene-5.2-mRNA-1 2 Reactome: R-HSA-1989781;Reactome: R-HSA-2151201 "PPARA activates gene expression";"Transcriptional activation of mitochondrial biogenesis" augustus-scaffold15380-size15878-processed-gene-0.0-mRNA-1 2 KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685 "Glutathione metabolism";"Detoxification of Reactive Oxygen Species" maker-scaffold257-size1050201-augustus-gene-4.2-mRNA-1 3 Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856 "mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination" maker-scaffold469-size850856-augustus-gene-7.11-mRNA-1 3 Reactome: R-HSA-392154;KEGG: 00230+4.6.1.2;Reactome: R-HSA-445355 "Nitric oxide stimulates guanylate cyclase";"Purine metabolism";"Smooth Muscle Contraction" augustus-scaffold4955-size184968-processed-gene-0.0-mRNA-1 3 Reactome: R-HSA-6811438;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878 "Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport" maker-scaffold1292-size529619-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" augustus-scaffold354-size960420-processed-gene-2.1-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold1806-size436157-augustus-gene-2.2-mRNA-1 5 KEGG: 00220+1.14.13.39;Reactome: R-HSA-1222556;KEGG: 00330+1.14.13.39;Reactome: R-HSA-392154;MetaCyc: PWY-4983 "Arginine biosynthesis";"ROS and RNS production in phagocytes";"Arginine and proline metabolism";"Nitric oxide stimulates guanylate cyclase";"Nitric oxide biosynthesis II (mammals)" maker-scaffold115-size1389820-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold2911-size306100-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-2393930 "Phosphate bond hydrolysis by NUDT proteins" maker-scaffold1835-size431567-augustus-gene-2.3-mRNA-1 3 Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.25;Reactome: R-HSA-6798695 "Lysosomal oligosaccharide catabolism";"Other glycan degradation";"Neutrophil degranulation" maker-scaffold352-size960311-augustus-gene-5.1-mRNA-1 2 Reactome: R-HSA-8949613;Reactome: R-HSA-163210 "Cristae formation";"Formation of ATP by chemiosmotic coupling" maker-scaffold2280-size372635-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" maker-scaffold983-size606302-augustus-gene-2.8-mRNA-1 11 Reactome: R-HSA-6804756;Reactome: R-HSA-5693579;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554;Reactome: R-HSA-5693616;Reactome: R-HSA-5693568;Reactome: R-HSA-5685942;Reactome: R-HSA-69166;Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-174437 "Regulation of TP53 Activity through Phosphorylation";"Homologous DNA Pairing and Strand Exchange";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Presynaptic phase of homologous DNA pairing and strand exchange";"Resolution of D-loop Structures through Holliday Junction Intermediates";"HDR through Homologous Recombination (HRR)";"Removal of the Flap Intermediate";"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Removal of the Flap Intermediate from the C-strand" augustus-scaffold3311-size275817-processed-gene-1.0-mRNA-1 3 Reactome: R-HSA-1650814;MetaCyc: PWY-7894;KEGG: 00330+1.14.11.2 "Collagen biosynthesis and modifying enzymes";"Procollagen hydroxylation and glycosylation";"Arginine and proline metabolism" maker-scaffold414-size892355-augustus-gene-6.1-mRNA-1 2 Reactome: R-HSA-426117;Reactome: R-HSA-5619039 "Cation-coupled Chloride cotransporters";"Defective SLC12A6 causes agenesis of the corpus callosum, with peripheral neuropathy (ACCPN)" maker-scaffold2374-size359636-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-163560 "Triglyceride catabolism" maker-scaffold9132-size56056-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold10685-size33740-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-3214847 "HATs acetylate histones" maker-scaffold183-size1182426-augustus-gene-8.2-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold1515-size479656-augustus-gene-0.2-mRNA-1 52 Reactome: R-HSA-9018519;Reactome: R-HSA-73762;Reactome: R-HSA-73779;Reactome: R-HSA-167242;Reactome: R-HSA-1834949;Reactome: R-HSA-167172;Reactome: R-HSA-6807505;Reactome: R-HSA-674695;Reactome: R-HSA-167162;Reactome: R-HSA-167160;Reactome: R-HSA-167290;Reactome: R-HSA-73980;Reactome: R-HSA-5578749;Reactome: R-HSA-72203;Reactome: R-HSA-167158;Reactome: R-HSA-73863;Reactome: R-HSA-113418;Reactome: R-HSA-76042;Reactome: R-HSA-6796648;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-8851708;Reactome: R-HSA-75953;Reactome: R-HSA-167161;Reactome: R-HSA-749476;Reactome: R-HSA-6782135;Reactome: R-HSA-5617472;Reactome: R-HSA-6803529;Reactome: R-HSA-76061;Reactome: R-HSA-73780;Reactome: R-HSA-77075;Reactome: R-HSA-6781823;Reactome: R-HSA-72163;Reactome: R-HSA-427413;Reactome: R-HSA-6781827;Reactome: R-HSA-6782210;Reactome: R-HSA-72086;Reactome: R-HSA-167200;Reactome: R-HSA-167287;Reactome: R-HSA-72165;Reactome: R-HSA-5250924;Reactome: R-HSA-75955;Reactome: R-HSA-73776;Reactome: R-HSA-167152;Reactome: R-HSA-167243;Reactome: R-HSA-168325;Reactome: R-HSA-73772;Reactome: R-HSA-112382;Reactome: R-HSA-167238;Reactome: R-HSA-167246;Reactome: R-HSA-203927;Reactome: R-HSA-5601884 "Estrogen-dependent gene expression";"RNA Polymerase I Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Cytosolic sensors of pathogen-associated DNA";"Transcription of the HIV genome";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II HIV Promoter Escape";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Pausing and recovery of HIV elongation";"RNA Polymerase III Transcription Termination";"Transcriptional regulation by small RNAs";"Processing of Capped Intron-Containing Pre-mRNA";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase I Transcription Termination";"Formation of the Early Elongation Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"Signaling by FGFR2 IIIa TM";"RNA Polymerase II Transcription Initiation";"HIV Transcription Initiation";"RNA Polymerase III Abortive And Retractive Initiation";"Dual incision in TC-NER";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"FGFR2 alternative splicing";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Chain Elongation";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of TC-NER Pre-Incision Complex";"mRNA Splicing - Major Pathway";"NoRC negatively regulates rRNA expression";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Capping";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"HIV elongation arrest and recovery";"mRNA Splicing - Minor Pathway";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Promoter Escape";"Formation of HIV elongation complex in the absence of HIV Tat";"Tat-mediated HIV elongation arrest and recovery";"Viral Messenger RNA Synthesis";"RNA Polymerase I Promoter Escape";"Formation of RNA Pol II elongation complex";"Pausing and recovery of Tat-mediated HIV elongation";"Tat-mediated elongation of the HIV-1 transcript";"MicroRNA (miRNA) biogenesis";"PIWI-interacting RNA (piRNA) biogenesis" maker-scaffold2395-size355334-augustus-gene-1.1-mRNA-1 8 KEGG: 00051+2.7.1.1;KEGG: 00052+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00520+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00500+2.7.1.1 "Fructose and mannose metabolism";"Galactose metabolism";"Streptomycin biosynthesis";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Amino sugar and nucleotide sugar metabolism";"Glycolysis";"Starch and sucrose metabolism" maker-scaffold2459-size353855-augustus-gene-1.2-mRNA-1 27 Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-3371453;Reactome: R-HSA-5578749;Reactome: R-HSA-159230;Reactome: R-HSA-168325;Reactome: R-HSA-4085377;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-168271;Reactome: R-HSA-159236;Reactome: R-HSA-159227;Reactome: R-HSA-9609690;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-4551638 "Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Regulation of HSF1-mediated heat shock response";"Transcriptional regulation by small RNAs";"Transport of the SLBP Dependant Mature mRNA";"Viral Messenger RNA Synthesis";"SUMOylation of SUMOylation proteins";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of the SLBP independent Mature mRNA";"HCMV Early Events";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of chromatin organization proteins" augustus-scaffold1018-size599003-processed-gene-4.1-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" augustus-scaffold1513-size517322-processed-gene-3.2-mRNA-1 1 Reactome: R-HSA-189451 "Heme biosynthesis" maker-scaffold2051-size398641-augustus-gene-2.4-mRNA-1 4 Reactome: R-HSA-3769402;Reactome: R-HSA-2122947;Reactome: R-HSA-201722;Reactome: R-HSA-4641265 "Deactivation of the beta-catenin transactivating complex";"NOTCH1 Intracellular Domain Regulates Transcription";"Formation of the beta-catenin:TCF transactivating complex";"Repression of WNT target genes" maker-scaffold2199-size385012-augustus-gene-2.8-mRNA-1 7 KEGG: 00250+4.3.2.2;MetaCyc: PWY-7234;KEGG: 00230+4.3.2.2;MetaCyc: PWY-7219;MetaCyc: PWY-6123;MetaCyc: PWY-6124;Reactome: R-HSA-73817 "Alanine, aspartate and glutamate metabolism";"Inosine-5'-phosphate biosynthesis III";"Purine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Inosine-5'-phosphate biosynthesis I";"Inosine-5'-phosphate biosynthesis II";"Purine ribonucleoside monophosphate biosynthesis" maker-scaffold6316-size126661-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-5658442 "Regulation of RAS by GAPs" maker-scaffold4465-size214992-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-5635838 "Activation of SMO" maker-scaffold2874-size309198-augustus-gene-0.2-mRNA-1 8 KEGG: 04926+2.7.11.1;Reactome: R-HSA-6791226;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1 "Relaxin signaling pathway";"Major pathway of rRNA processing in the nucleolus and cytosol";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"Thermogenesis";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway" augustus-scaffold8629-size66655-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-211945 "Phase I - Functionalization of compounds" maker-scaffold1361-size517406-augustus-gene-1.5-mRNA-1 13 MetaCyc: PWY-4381;MetaCyc: PWY-5744;KEGG: 00230+2.1.2.2;Reactome: R-HSA-196780;KEGG: 00670+2.1.2.9;KEGG: 00970+2.1.2.9;MetaCyc: PWY-5789;MetaCyc: PWY-6613;KEGG: 00670+2.1.2.2;MetaCyc: PWY-5743;Reactome: R-HSA-73817;MetaCyc: PWY-6722;MetaCyc: PWY-6121 "Fatty acid biosynthesis initiation (bacteria and plants)";"Glyoxylate assimilation";"Purine metabolism";"Biotin transport and metabolism";"One carbon pool by folate";"Aminoacyl-tRNA biosynthesis";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"One carbon pool by folate";"3-hydroxypropanoate cycle";"Purine ribonucleoside monophosphate biosynthesis";"Candicidin biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis I" maker-scaffold5705-size177505-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold1841-size430617-augustus-gene-3.6-mRNA-1 2 Reactome: R-HSA-194840;Reactome: R-HSA-6811436 "Rho GTPase cycle";"COPI-independent Golgi-to-ER retrograde traffic" maker-scaffold4045-size227912-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold1084-size576883-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-163560 "Triglyceride catabolism" maker-scaffold7504-size91392-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-204005;Reactome: R-HSA-5694530 "COPII-mediated vesicle transport";"Cargo concentration in the ER" maker-scaffold1396-size507743-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-5620922 "BBSome-mediated cargo-targeting to cilium" augustus-scaffold200-size1131578-processed-gene-0.2-mRNA-1 2 Reactome: R-HSA-901032;MetaCyc: PWY-7511 "ER Quality Control Compartment (ERQC)";"Protein ubiquitination" maker-scaffold4932-size189604-augustus-gene-0.8-mRNA-1 3 Reactome: R-HSA-73843;KEGG: 00230+2.7.6.1;KEGG: 00030+2.7.6.1 "5-Phosphoribose 1-diphosphate biosynthesis";"Purine metabolism";"Pentose phosphate pathway" maker-scaffold10377-size37607-augustus-gene-0.2-mRNA-1 6 Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-5663220;Reactome: R-HSA-141444 "Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" maker-scaffold1100-size570348-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-163560 "Triglyceride catabolism" maker-scaffold2471-size350398-augustus-gene-2.4-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;Reactome: R-HSA-5389840 "Mitochondrial translation termination";"Mitochondrial translation initiation";"Mitochondrial translation elongation" maker-scaffold1189-size558627-augustus-gene-3.2-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold1712-size451175-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold291-size1197116-augustus-gene-5.2-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-6807878 "COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport" maker-scaffold4397-size210599-augustus-gene-0.2-mRNA-1 12 Reactome: R-HSA-6804756;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-112382;Reactome: R-HSA-674695;Reactome: R-HSA-167246;Reactome: R-HSA-167200;Reactome: R-HSA-167243 "Regulation of TP53 Activity through Phosphorylation";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Pre-transcription Events";"Tat-mediated elongation of the HIV-1 transcript";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Tat-mediated HIV elongation arrest and recovery" maker-scaffold3924-size230876-augustus-gene-0.2-mRNA-1 1 Reactome: R-HSA-5620922 "BBSome-mediated cargo-targeting to cilium" maker-scaffold4143-size225951-augustus-gene-1.3-mRNA-1 13 Reactome: R-HSA-1257604;Reactome: R-HSA-3371571;Reactome: R-HSA-389357;Reactome: R-HSA-165159;Reactome: R-HSA-5628897;Reactome: R-HSA-8943724;Reactome: R-HSA-6804757;Reactome: R-HSA-5218920;Reactome: R-HSA-1632852;Reactome: R-HSA-166208;Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-5674400 "PIP3 activates AKT signaling";"HSF1-dependent transactivation";"CD28 dependent PI3K/Akt signaling";"mTOR signalling";"TP53 Regulates Metabolic Genes";"Regulation of PTEN gene transcription";"Regulation of TP53 Degradation";"VEGFR2 mediated vascular permeability";"Macroautophagy";"mTORC1-mediated signalling";"Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"Constitutive Signaling by AKT1 E17K in Cancer" maker-scaffold410-size896665-augustus-gene-7.5-mRNA-1 17 Reactome: R-HSA-69656;Reactome: R-HSA-111448;Reactome: R-HSA-69205;Reactome: R-HSA-6804114;Reactome: R-HSA-8953750;Reactome: R-HSA-2559580;Reactome: R-HSA-139915;Reactome: R-HSA-113501;Reactome: R-HSA-69231;Reactome: R-HSA-9616222;Reactome: R-HSA-1362300;Reactome: R-HSA-2173796;Reactome: R-HSA-1538133;Reactome: R-HSA-1912408;Reactome: R-HSA-69202;Reactome: R-HSA-2559585;Reactome: R-HSA-1362277 "Cyclin A:Cdk2-associated events at S phase entry";"Activation of NOXA and translocation to mitochondria";"G1/S-Specific Transcription";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Transcriptional Regulation by E2F6";"Oxidative Stress Induced Senescence";"Activation of PUMA and translocation to mitochondria";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Cyclin D associated events in G1";"Transcriptional regulation of granulopoiesis";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"G0 and Early G1";"Pre-NOTCH Transcription and Translation";"Cyclin E associated events during G1/S transition";"Oncogene Induced Senescence";"Transcription of E2F targets under negative control by DREAM complex" maker-scaffold1767-size445491-augustus-gene-3.4-mRNA-1 2 Reactome: R-HSA-445355;Reactome: R-HSA-390522 "Smooth Muscle Contraction";"Striated Muscle Contraction" maker-scaffold4966-size180287-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-936837 "Ion transport by P-type ATPases" maker-scaffold5362-size162419-augustus-gene-0.9-mRNA-1 2 Reactome: R-HSA-5578998;Reactome: R-HSA-174403 "Defective OPLAH causes 5-oxoprolinase deficiency (OPLAHD)";"Glutathione synthesis and recycling" maker-scaffold1085-size818524-augustus-gene-3.2-mRNA-1 14 Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-75955;Reactome: R-HSA-167152;Reactome: R-HSA-167242;Reactome: R-HSA-167243;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-112382;Reactome: R-HSA-6796648;Reactome: R-HSA-167238;Reactome: R-HSA-167246;Reactome: R-HSA-674695;Reactome: R-HSA-167200 "HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"RNA Polymerase II Transcription Elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Tat-mediated HIV elongation arrest and recovery";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Formation of RNA Pol II elongation complex";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of Tat-mediated HIV elongation";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Pre-transcription Events";"Formation of HIV-1 elongation complex containing HIV-1 Tat" maker-scaffold7571-size95346-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold6598-size115905-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-381340;Reactome: R-HSA-1989781 "Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression" maker-scaffold3509-size259622-augustus-gene-1.7-mRNA-1 2 Reactome: R-HSA-3359473;Reactome: R-HSA-196741 "Defective MMADHC causes methylmalonic aciduria and homocystinuria type cblD";"Cobalamin (Cbl, vitamin B12) transport and metabolism" maker-scaffold515-size825572-augustus-gene-5.1-mRNA-1 13 Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-192823 "Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation" maker-scaffold1676-size454805-augustus-gene-2.5-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" augustus-scaffold545-size797847-processed-gene-6.0-mRNA-1 2 Reactome: R-HSA-6791226;Reactome: R-HSA-6790901 "Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol" maker-scaffold4673-size194066-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-380270;Reactome: R-HSA-380320 "Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes" maker-scaffold608-size753027-augustus-gene-6.3-mRNA-1 2 KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981 "Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis" maker-scaffold5753-size147418-augustus-gene-0.9-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold12900-size32365-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-611105 "Respiratory electron transport" maker-scaffold985-size604716-augustus-gene-1.1-mRNA-1 10 Reactome: R-HSA-111457;Reactome: R-HSA-111459;Reactome: R-HSA-2151201;Reactome: R-HSA-111464;Reactome: R-HSA-111458;Reactome: R-HSA-5628897;Reactome: R-HSA-611105;Reactome: R-HSA-3299685;Reactome: R-HSA-9627069;Reactome: R-HSA-111463 "Release of apoptotic factors from the mitochondria";"Activation of caspases through apoptosome-mediated cleavage";"Transcriptional activation of mitochondrial biogenesis";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"Formation of apoptosome";"TP53 Regulates Metabolic Genes";"Respiratory electron transport";"Detoxification of Reactive Oxygen Species";"Regulation of the apoptosome activity";"SMAC (DIABLO) binds to IAPs" augustus-scaffold1519-size494596-processed-gene-3.2-mRNA-1 5 Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-6814122;Reactome: R-HSA-390471;Reactome: R-HSA-389957 "Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Association of TriC/CCT with target proteins during biosynthesis";"Prefoldin mediated transfer of substrate to CCT/TriC" maker-scaffold111-size1895004-augustus-gene-16.3-mRNA-1 4 Reactome: R-HSA-166058;Reactome: R-HSA-6799198;Reactome: R-HSA-975871;Reactome: R-HSA-975138 "MyD88:MAL(TIRAP) cascade initiated on plasma membrane";"Complex I biogenesis";"MyD88 cascade initiated on plasma membrane";"TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation" maker-scaffold398-size1440741-augustus-gene-7.2-mRNA-1 4 Reactome: R-HSA-3000171;Reactome: R-HSA-3000157;Reactome: R-HSA-8874081;Reactome: R-HSA-3000178 "Non-integrin membrane-ECM interactions";"Laminin interactions";"MET activates PTK2 signaling";"ECM proteoglycans" maker-scaffold1213-size546216-augustus-gene-2.2-mRNA-1 2 Reactome: R-HSA-5083635;Reactome: R-HSA-5173214 "Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins" maker-scaffold1559-size472149-augustus-gene-3.6-mRNA-1 1 Reactome: R-HSA-197264 "Nicotinamide salvaging" maker-scaffold4736-size191207-augustus-gene-0.3-mRNA-1 5 Reactome: R-HSA-204005;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438;Reactome: R-HSA-6811434 "COPII-mediated vesicle transport";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic";"COPI-dependent Golgi-to-ER retrograde traffic" maker-scaffold2046-size399665-augustus-gene-1.6-mRNA-1 6 Reactome: R-HSA-4641265;Reactome: R-HSA-4086398;Reactome: R-HSA-3769402;Reactome: R-HSA-8951430;Reactome: R-HSA-201722;Reactome: R-HSA-4411364 "Repression of WNT target genes";"Ca2+ pathway";"Deactivation of the beta-catenin transactivating complex";"RUNX3 regulates WNT signaling";"Formation of the beta-catenin:TCF transactivating complex";"Binding of TCF/LEF:CTNNB1 to target gene promoters" maker-scaffold1891-size422512-augustus-gene-3.5-mRNA-1 2 Reactome: R-HSA-70350;Reactome: R-HSA-168928 "Fructose catabolism";"DDX58/IFIH1-mediated induction of interferon-alpha/beta" maker-scaffold3158-size283953-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold5325-size162602-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-204005 "COPII-mediated vesicle transport" augustus-scaffold1654-size576866-processed-gene-1.3-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7656;MetaCyc: PWY-7782;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I" maker-scaffold6240-size128878-augustus-gene-0.3-mRNA-1 3 Reactome: R-HSA-8951664;Reactome: R-HSA-1234176;Reactome: R-HSA-1234158 "Neddylation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Regulation of gene expression by Hypoxia-inducible Factor" augustus-scaffold1039-size940658-processed-gene-4.3-mRNA-1 5 Reactome: R-HSA-1483166;KEGG: 00564+1.1.1.94;MetaCyc: PWY-5981;MetaCyc: PWY-5667;MetaCyc: PWY-7902 "Synthesis of PA";"Glycerophospholipid metabolism";"CDP-diacylglycerol biosynthesis III";"CDP-diacylglycerol biosynthesis I";"Glucosylglycerol biosynthesis" maker-scaffold550-size791213-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-5620924 "Intraflagellar transport" maker-scaffold4009-size230369-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold15190-size28212-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-8964539 "Glutamate and glutamine metabolism" maker-scaffold694-size717638-augustus-gene-6.4-mRNA-1 5 KEGG: 00270+2.1.1.37;Reactome: R-HSA-212300;Reactome: R-HSA-427413;Reactome: R-HSA-4655427;Reactome: R-HSA-5334118 "Cysteine and methionine metabolism";"PRC2 methylates histones and DNA";"NoRC negatively regulates rRNA expression";"SUMOylation of DNA methylation proteins";"DNA methylation" maker-scaffold3409-size265461-augustus-gene-0.2-mRNA-1 16 Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72764;Reactome: R-HSA-9010553;Reactome: R-HSA-156902 "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Eukaryotic Translation Termination";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation" maker-scaffold2739-size325326-augustus-gene-0.1-mRNA-1 5 KEGG: 00230+2.7.4.10;KEGG: 00230+2.7.4.3;MetaCyc: PWY-7219;Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3 "Purine metabolism";"Purine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism" maker-scaffold3388-size409158-augustus-gene-2.3-mRNA-1 7 Reactome: R-HSA-180746;Reactome: R-HSA-168333;Reactome: R-HSA-1655829;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-203927;Reactome: R-HSA-6784531 "Nuclear import of Rev protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"MicroRNA (miRNA) biogenesis";"tRNA processing in the nucleus" maker-scaffold3135-size288208-augustus-gene-1.1-mRNA-1 6 Reactome: R-HSA-181430;Reactome: R-HSA-210500;Reactome: R-HSA-212676;Reactome: R-HSA-388844;Reactome: R-HSA-264642;Reactome: R-HSA-181429 "Norepinephrine Neurotransmitter Release Cycle";"Glutamate Neurotransmitter Release Cycle";"Dopamine Neurotransmitter Release Cycle";"Receptor-type tyrosine-protein phosphatases";"Acetylcholine Neurotransmitter Release Cycle";"Serotonin Neurotransmitter Release Cycle" maker-scaffold1279-size534615-augustus-gene-4.6-mRNA-1 2 KEGG: 00520+5.4.2.10;MetaCyc: PWY-6749 "Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I" maker-scaffold6264-size127852-augustus-gene-0.5-mRNA-1 16 Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-1799339;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-72702 "Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"SRP-dependent cotranslational protein targeting to membrane";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition" maker-scaffold4543-size202442-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold4108-size227127-augustus-gene-1.5-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold854-size652873-augustus-gene-0.0-mRNA-1 1 Reactome: R-HSA-189085 "Digestion of dietary carbohydrate" maker-scaffold716-size705642-augustus-gene-6.2-mRNA-1 2 Reactome: R-HSA-5173214;Reactome: R-HSA-5083635 "O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)" maker-scaffold3773-size240897-augustus-gene-1.9-mRNA-1 19 KEGG: 00410+1.3.3.6;KEGG: 00071+1.3.3.6;MetaCyc: PWY-5136;MetaCyc: PWY-6837;MetaCyc: PWY-7338;MetaCyc: PWY-7726;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7288;MetaCyc: PWY-7007;MetaCyc: PWY-7574;MetaCyc: PWY-6920;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7291;MetaCyc: PWY-7854;MetaCyc: PWY-7340;MetaCyc: PWY-7606;MetaCyc: PWY-7858;MetaCyc: PWY-735;MetaCyc: PWY-7337 "beta-Alanine metabolism";"Fatty acid degradation";"Fatty acid beta-oxidation II (plant peroxisome)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Propanoate metabolism";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Methyl ketone biosynthesis (engineered)";"Propanoyl-coa degradation II";"6-gingerol analog biosynthesis (engineered)";"alpha-Linolenic acid metabolism";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(5Z)-dodecenoate biosynthesis II";"Jasmonic acid biosynthesis";"10-cis-heptadecenoyl-CoA degradation (yeast)" maker-scaffold3241-size277486-augustus-gene-0.1-mRNA-1 2 KEGG: 00511+3.2.1.24;Reactome: R-HSA-8853383 "Other glycan degradation";"Lysosomal oligosaccharide catabolism" maker-scaffold5935-size140704-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold1500-size481877-augustus-gene-3.3-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold268-size1038485-augustus-gene-9.3-mRNA-1 3 Reactome: R-HSA-2151201;Reactome: R-HSA-5689603;Reactome: R-HSA-3214847 "Transcriptional activation of mitochondrial biogenesis";"UCH proteinases";"HATs acetylate histones" maker-scaffold2842-size325165-augustus-gene-2.4-mRNA-1 4 KEGG: 00513+2.4.1.260;Reactome: R-HSA-446193;KEGG: 00510+2.4.1.260;Reactome: R-HSA-4720489 "Various types of N-glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"N-Glycan biosynthesis";"Defective ALG12 causes ALG12-CDG (CDG-1g)" maker-scaffold5617-size155252-augustus-gene-0.2-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72695;Reactome: R-HSA-72702 "GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition" augustus-scaffold3838-size237268-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-432047 "Passive transport by Aquaporins" maker-scaffold3038-size297107-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold5070-size178579-augustus-gene-0.11-mRNA-1 24 Reactome: R-HSA-8955332;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-380320;Reactome: R-HSA-6807878;Reactome: R-HSA-9609690;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-190840;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-2132295;Reactome: R-HSA-437239;Reactome: R-HSA-3371497;Reactome: R-HSA-9619483;Reactome: R-HSA-6811434;Reactome: R-HSA-2500257;Reactome: R-HSA-5626467;Reactome: R-HSA-983189;Reactome: R-HSA-5663220 "Carboxyterminal post-translational modifications of tubulin";"Gap junction assembly";"Cilium Assembly";"Recruitment of NuMA to mitotic centrosomes";"COPI-mediated anterograde transport";"HCMV Early Events";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"MHC class II antigen presentation";"Recycling pathway of L1";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Activation of AMPK downstream of NMDARs";"COPI-dependent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"RHO GTPases activate IQGAPs";"Kinesins";"RHO GTPases Activate Formins" maker-scaffold1565-size666251-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-6790901 "rRNA modification in the nucleus and cytosol" maker-scaffold737-size693857-augustus-gene-2.3-mRNA-1 2 Reactome: R-HSA-442982;Reactome: R-HSA-5673001 "Ras activation upon Ca2+ influx through NMDA receptor";"RAF/MAP kinase cascade" maker-scaffold2422-size352689-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" augustus-scaffold500-size832280-processed-gene-7.0-mRNA-1 8 Reactome: R-HSA-6798695;MetaCyc: PWY-6556;KEGG: 00240+3.5.4.5;KEGG: 00983+3.5.4.5;Reactome: R-HSA-73614;MetaCyc: PWY-7193;MetaCyc: PWY-7181;MetaCyc: PWY-7199 "Neutrophil degranulation";"Pyrimidine ribonucleosides salvage II";"Pyrimidine metabolism";"Drug metabolism - other enzymes";"Pyrimidine salvage";"Pyrimidine ribonucleosides salvage I";"Pyrimidine deoxyribonucleosides degradation";"Pyrimidine deoxyribonucleosides salvage" maker-scaffold2396-size553488-augustus-gene-4.7-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold4719-size192749-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-983168 "Antigen processing: Ubiquitination & Proteasome degradation" augustus-scaffold37434-size11953-processed-gene-0.0-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" maker-scaffold1103-size571636-augustus-gene-0.2-mRNA-1 13 Reactome: R-HSA-2022857;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2024101;Reactome: R-HSA-2160916;KEGG: 00603+3.2.1.52;KEGG: 00520+3.2.1.52;MetaCyc: PWY-7883;KEGG: 00511+3.2.1.52;KEGG: 00531+3.2.1.52;MetaCyc: PWY-7822;MetaCyc: PWY-6902;Reactome: R-HSA-1660662;KEGG: 00604+3.2.1.52 "Keratan sulfate degradation";"Various types of N-glycan biosynthesis";"CS/DS degradation";"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Amino sugar and nucleotide sugar metabolism";"Anhydromuropeptides recycling II";"Other glycan degradation";"Glycosaminoglycan degradation";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Glycosphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series" maker-scaffold4813-size188728-augustus-gene-0.7-mRNA-1 1 Reactome: R-HSA-9603798 "Class I peroxisomal membrane protein import" maker-scaffold4702-size192523-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-389957 "Prefoldin mediated transfer of substrate to CCT/TriC" maker-scaffold1696-size454488-augustus-gene-3.6-mRNA-1 30 KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-6804758;Reactome: R-HSA-8948751;KEGG: 04150+2.7.11.1;Reactome: R-HSA-5218920;Reactome: R-HSA-198693;Reactome: R-HSA-9614399;KEGG: 04151+2.7.11.1;Reactome: R-HSA-5674400;KEGG: 04714+2.7.11.1;Reactome: R-HSA-198323;Reactome: R-HSA-69202;Reactome: R-HSA-111447;Reactome: R-HSA-199418;Reactome: R-HSA-5628897;Reactome: R-HSA-6804757;Reactome: R-HSA-8941332;Reactome: R-HSA-6804759;Reactome: R-HSA-8876198;Reactome: R-HSA-69656;Reactome: R-HSA-211163;KEGG: 05165+2.7.11.1;Reactome: R-HSA-1257604;Reactome: R-HSA-1358803;Reactome: R-HSA-9634638;KEGG: 04926+2.7.11.1;Reactome: R-HSA-389357;Reactome: R-HSA-389513;Reactome: R-HSA-392451 "Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Regulation of TP53 Activity through Acetylation";"Regulation of PTEN stability and activity";"mTOR signaling pathway";"VEGFR2 mediated vascular permeability";"AKT phosphorylates targets in the nucleus";"Regulation of localization of FOXO transcription factors";"PI3K-Akt signaling pathway";"Constitutive Signaling by AKT1 E17K in Cancer";"Thermogenesis";"AKT phosphorylates targets in the cytosol";"Cyclin E associated events during G1/S transition";"Activation of BAD and translocation to mitochondria";"Negative regulation of the PI3K/AKT network";"TP53 Regulates Metabolic Genes";"Regulation of TP53 Degradation";"RUNX2 regulates genes involved in cell migration";"Regulation of TP53 Activity through Association with Co-factors";"RAB GEFs exchange GTP for GDP on RABs";"Cyclin A:Cdk2-associated events at S phase entry";"AKT-mediated inactivation of FOXO1A";"Human papillomavirus infection";"PIP3 activates AKT signaling";"Downregulation of ERBB2:ERBB3 signaling";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"Relaxin signaling pathway";"CD28 dependent PI3K/Akt signaling";"CTLA4 inhibitory signaling";"G beta:gamma signalling through PI3Kgamma" augustus-scaffold1448-size494773-processed-gene-1.0-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold1601-size462555-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold5806-size145067-augustus-gene-0.3-mRNA-1 2 KEGG: 00970+2.1.2.9;KEGG: 00670+2.1.2.9 "Aminoacyl-tRNA biosynthesis";"One carbon pool by folate" maker-scaffold255-size1055140-augustus-gene-5.3-mRNA-1 13 Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-6791226;Reactome: R-HSA-975957 "Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold140-size1308806-augustus-gene-3.1-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold1878-size425267-augustus-gene-3.9-mRNA-1 1 Reactome: R-HSA-6791226 "Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold2361-size361633-augustus-gene-2.9-mRNA-1 5 Reactome: R-HSA-8856828;Reactome: R-HSA-190873;Reactome: R-HSA-196025;Reactome: R-HSA-3928665;Reactome: R-HSA-8856825 "Clathrin-mediated endocytosis";"Gap junction degradation";"Formation of annular gap junctions";"EPH-ephrin mediated repulsion of cells";"Cargo recognition for clathrin-mediated endocytosis" maker-scaffold1064-size582265-augustus-gene-4.2-mRNA-1 3 Reactome: R-HSA-112382;Reactome: R-HSA-75955;Reactome: R-HSA-674695 "Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events" augustus-scaffold1811-size937344-processed-gene-1.1-mRNA-1 7 Reactome: R-HSA-2691232;Reactome: R-HSA-9013507;Reactome: R-HSA-2122948;Reactome: R-HSA-2979096;Reactome: R-HSA-2894862;Reactome: R-HSA-2660826;Reactome: R-HSA-2644606 "Constitutive Signaling by NOTCH1 HD Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Constitutive Signaling by NOTCH1 PEST Domain Mutants" maker-scaffold3636-size250058-augustus-gene-1.8-mRNA-1 56 Reactome: R-HSA-1236974;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5668541;Reactome: R-HSA-8939902;Reactome: R-HSA-9010553;Reactome: R-HSA-1234176;Reactome: R-HSA-4608870;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-75815;Reactome: R-HSA-180585;Reactome: R-HSA-5610780;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-2871837;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-174113;Reactome: R-HSA-349425;Reactome: R-HSA-8948751;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-1169091;Reactome: R-HSA-2467813;Reactome: R-HSA-350562;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-187577;Reactome: R-HSA-9604323;Reactome: R-HSA-9020702;Reactome: R-HSA-5358346;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-5658442;Reactome: R-HSA-5687128;Reactome: R-HSA-69481;Reactome: R-HSA-69017;Reactome: R-HSA-8939236;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-983168;Reactome: R-HSA-68827;Reactome: R-HSA-5689603;Reactome: R-HSA-4641257;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-8941858;Reactome: R-HSA-4641258;Reactome: R-HSA-1236978;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-174178;Reactome: R-HSA-8951664 "ER-Phagosome pathway";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"TNFR2 non-canonical NF-kB pathway";"Regulation of RUNX2 expression and activity";"Regulation of expression of SLITs and ROBOs";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Asymmetric localization of PCP proteins";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Ubiquitin-dependent degradation of Cyclin D";"Vif-mediated degradation of APOBEC3G";"Degradation of GLI1 by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"FCERI mediated NF-kB activation";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"SCF-beta-TrCP mediated degradation of Emi1";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of PTEN stability and activity";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"Activation of NF-kappaB in B cells";"Separation of Sister Chromatids";"Regulation of ornithine decarboxylase (ODC)";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"SCF(Skp2)-mediated degradation of p27/p21";"Negative regulation of NOTCH4 signaling";"Interleukin-1 signaling";"Hedgehog ligand biogenesis";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"Regulation of RAS by GAPs";"MAPK6/MAPK4 signaling";"G2/M Checkpoints";"CDK-mediated phosphorylation and removal of Cdc6";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Antigen processing: Ubiquitination & Proteasome degradation";"CDT1 association with the CDC6:ORC:origin complex";"UCH proteinases";"Degradation of AXIN";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of RUNX3 expression and activity";"Degradation of DVL";"Cross-presentation of soluble exogenous antigens (endosomes)";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation" maker-scaffold5166-size172928-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-5649702 "APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway" maker-scaffold427-size884464-augustus-gene-7.3-mRNA-1 3 MetaCyc: PWY-7533;Reactome: R-HSA-2142691;Reactome: R-HSA-5423646 "Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Aflatoxin activation and detoxification" maker-scaffold5323-size164559-augustus-gene-0.7-mRNA-1 1 Reactome: R-HSA-2022377 "Metabolism of Angiotensinogen to Angiotensins" maker-scaffold1640-size462359-augustus-gene-3.14-mRNA-1 16 Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72764;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72695;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956 "Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Eukaryotic Translation Termination";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Formation of the ternary complex, and subsequently, the 43S complex";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" maker-scaffold929-size627189-augustus-gene-5.4-mRNA-1 5 Reactome: R-HSA-2426168;Reactome: R-HSA-199220;Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-75105 "Activation of gene expression by SREBF (SREBP)";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Fatty acyl-CoA biosynthesis" maker-scaffold1750-size446167-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-6809371 "Formation of the cornified envelope" augustus-scaffold1888-size497137-processed-gene-3.4-mRNA-1 3 Reactome: R-HSA-2408522;Reactome: R-HSA-379716;KEGG: 00970+6.1.1.4 "Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis" maker-scaffold6638-size115109-augustus-gene-0.1-mRNA-1 24 Reactome: R-HSA-456926;Reactome: R-HSA-8964616;Reactome: R-HSA-420092;Reactome: R-HSA-500657;Reactome: R-HSA-202040;Reactome: R-HSA-418594;Reactome: R-HSA-392170;Reactome: R-HSA-9009391;Reactome: R-HSA-400042;Reactome: R-HSA-432040;Reactome: R-HSA-6814122;Reactome: R-HSA-416482;Reactome: R-HSA-418592;Reactome: R-HSA-392451;Reactome: R-HSA-392851;Reactome: R-HSA-418555;Reactome: R-HSA-381676;Reactome: R-HSA-163359;Reactome: R-HSA-4086398;Reactome: R-HSA-428930;Reactome: R-HSA-418597;Reactome: R-HSA-8964315;Reactome: R-HSA-418217;Reactome: R-HSA-416476 "Thrombin signalling through proteinase activated receptors (PARs)";"G beta:gamma signalling through CDC42";"Glucagon-type ligand receptors";"Presynaptic function of Kainate receptors";"G-protein activation";"G alpha (i) signalling events";"ADP signalling through P2Y purinoceptor 12";"Extra-nuclear estrogen signaling";"Adrenaline,noradrenaline inhibits insulin secretion";"Vasopressin regulates renal water homeostasis via Aquaporins";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"G alpha (12/13) signalling events";"ADP signalling through P2Y purinoceptor 1";"G beta:gamma signalling through PI3Kgamma";"Prostacyclin signalling through prostacyclin receptor";"G alpha (s) signalling events";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Glucagon signaling in metabolic regulation";"Ca2+ pathway";"Thromboxane signalling through TP receptor";"G alpha (z) signalling events";"G beta:gamma signalling through BTK";"G beta:gamma signalling through PLC beta";"G alpha (q) signalling events" maker-scaffold1384-size640529-augustus-gene-3.8-mRNA-1 11 KEGG: 05165+2.7.11.1;Reactome: R-HSA-5693571;Reactome: R-HSA-3270619;KEGG: 04926+2.7.11.1;Reactome: R-HSA-1834949;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-8866654 "Human papillomavirus infection";"Nonhomologous End-Joining (NHEJ)";"IRF3-mediated induction of type I IFN";"Relaxin signaling pathway";"Cytosolic sensors of pathogen-associated DNA";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Thermogenesis";"PI3K-Akt signaling pathway";"E3 ubiquitin ligases ubiquitinate target proteins" maker-scaffold26167-size14325-augustus-gene-0.1-mRNA-1 4 KEGG: 00480+2.5.1.16;KEGG: 00270+2.5.1.16;Reactome: R-HSA-351202;KEGG: 00330+2.5.1.16 "Glutathione metabolism";"Cysteine and methionine metabolism";"Metabolism of polyamines";"Arginine and proline metabolism" maker-scaffold286-size1347656-augustus-gene-10.1-mRNA-1 3 Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436 "PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway" maker-scaffold4408-size206779-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-111465 "Apoptotic cleavage of cellular proteins" maker-scaffold675-size719108-augustus-gene-4.3-mRNA-1 1 Reactome: R-HSA-162658 "Golgi Cisternae Pericentriolar Stack Reorganization" maker-scaffold6291-size126570-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-6799198;Reactome: R-HSA-611105 "Complex I biogenesis";"Respiratory electron transport" maker-scaffold491-size903384-augustus-gene-1.2-mRNA-1 13 Reactome: R-HSA-2132295;Reactome: R-HSA-5140745;Reactome: R-HSA-437239;Reactome: R-HSA-167590;Reactome: R-HSA-177504;Reactome: R-HSA-8964038;Reactome: R-HSA-8866427;Reactome: R-HSA-416993;Reactome: R-HSA-182218;Reactome: R-HSA-8856828;Reactome: R-HSA-5099900;Reactome: R-HSA-8856825;Reactome: R-HSA-3928665 "MHC class II antigen presentation";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Recycling pathway of L1";"Nef Mediated CD4 Down-regulation";"Retrograde neurotrophin signalling";"LDL clearance";"VLDLR internalisation and degradation";"Trafficking of GluR2-containing AMPA receptors";"Nef Mediated CD8 Down-regulation";"Clathrin-mediated endocytosis";"WNT5A-dependent internalization of FZD4";"Cargo recognition for clathrin-mediated endocytosis";"EPH-ephrin mediated repulsion of cells" maker-scaffold1781-size696304-augustus-gene-5.10-mRNA-1 4 MetaCyc: PWY-3722;KEGG: 00260+1.2.1.8+1.1.99.1;Reactome: R-HSA-6798163;MetaCyc: PWY-7494 "Glycine betaine biosynthesis II (Gram-positive bacteria)";"Glycine, serine and threonine metabolism";"Choline catabolism";"Choline degradation IV" maker-scaffold414-size892355-augustus-gene-7.8-mRNA-1 3 Reactome: R-HSA-1474228;Reactome: R-HSA-1592389;Reactome: R-HSA-1442490 "Degradation of the extracellular matrix";"Activation of Matrix Metalloproteinases";"Collagen degradation" maker-scaffold8165-size76499-augustus-gene-0.5-mRNA-1 4 MetaCyc: PWY-5188;Reactome: R-HSA-379726;KEGG: 00860+6.1.1.17;KEGG: 00970+6.1.1.17 "Tetrapyrrole biosynthesis I (from glutamate)";"Mitochondrial tRNA aminoacylation";"Porphyrin and chlorophyll metabolism";"Aminoacyl-tRNA biosynthesis" maker-scaffold3773-size240897-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-162791 "Attachment of GPI anchor to uPAR" maker-scaffold1264-size539145-augustus-gene-4.4-mRNA-1 2 Reactome: R-HSA-611105;Reactome: R-HSA-6799198 "Respiratory electron transport";"Complex I biogenesis" maker-scaffold1560-size473978-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-1989781;Reactome: R-HSA-2151201 "PPARA activates gene expression";"Transcriptional activation of mitochondrial biogenesis" maker-scaffold2184-size382720-augustus-gene-1.2-mRNA-1 3 Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286 "Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation" maker-scaffold285-size1013099-augustus-gene-9.3-mRNA-1 2 Reactome: R-HSA-5689880;Reactome: R-HSA-3214847 "Ub-specific processing proteases";"HATs acetylate histones" maker-scaffold3167-size283916-augustus-gene-0.2-mRNA-1 5 Reactome: R-HSA-73856;Reactome: R-HSA-77595;Reactome: R-HSA-6784531;Reactome: R-HSA-72187;Reactome: R-HSA-72163 "RNA Polymerase II Transcription Termination";"Processing of Intronless Pre-mRNAs";"tRNA processing in the nucleus";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway" maker-scaffold1879-size425179-augustus-gene-3.13-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold3467-size261334-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold3363-size270401-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" maker-scaffold90-size1469227-augustus-gene-13.12-mRNA-1 2 Reactome: R-HSA-68962;Reactome: R-HSA-176187 "Activation of the pre-replicative complex";"Activation of ATR in response to replication stress" maker-scaffold929-size627189-augustus-gene-2.3-mRNA-1 3 Reactome: R-HSA-5423646;Reactome: R-HSA-2142691;MetaCyc: PWY-7533 "Aflatoxin activation and detoxification";"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Gliotoxin biosynthesis" maker-scaffold207-size1178031-augustus-gene-3.1-mRNA-1 9 Reactome: R-HSA-5673001;Reactome: R-HSA-3928662;Reactome: R-HSA-9609736;Reactome: R-HSA-6794361;Reactome: R-HSA-438066;Reactome: R-HSA-8849932;Reactome: R-HSA-9617324;Reactome: R-HSA-442982;Reactome: R-HSA-9620244 "RAF/MAP kinase cascade";"EPHB-mediated forward signaling";"Assembly and cell surface presentation of NMDA receptors";"Neurexins and neuroligins";"Unblocking of NMDA receptors, glutamate binding and activation";"Synaptic adhesion-like molecules";"Negative regulation of NMDA receptor-mediated neuronal transmission";"Ras activation upon Ca2+ influx through NMDA receptor";"Long-term potentiation" augustus-scaffold7650-size88221-processed-gene-0.0-mRNA-1 7 Reactome: R-HSA-171319;Reactome: R-HSA-201722;Reactome: R-HSA-5689880;Reactome: R-HSA-5696394;Reactome: R-HSA-5689603;Reactome: R-HSA-3214847;Reactome: R-HSA-606279 "Telomere Extension By Telomerase";"Formation of the beta-catenin:TCF transactivating complex";"Ub-specific processing proteases";"DNA Damage Recognition in GG-NER";"UCH proteinases";"HATs acetylate histones";"Deposition of new CENPA-containing nucleosomes at the centromere" maker-scaffold4543-size202442-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-75105 "Fatty acyl-CoA biosynthesis" maker-scaffold15-size2120621-augustus-gene-1.2-mRNA-1 5 MetaCyc: PWY-7282;KEGG: 00750+2.7.1.35;MetaCyc: PWY-7204;Reactome: R-HSA-6798695;Reactome: R-HSA-964975 "4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"Vitamin B6 metabolism";"Pyridoxal 5'-phosphate salvage II (plants)";"Neutrophil degranulation";"Vitamins B6 activation to pyridoxal phosphate" maker-scaffold8308-size73513-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-1632852 "Macroautophagy" maker-scaffold3919-size232718-augustus-gene-0.1-mRNA-1 2 MetaCyc: PWY-6829;Reactome: R-HSA-6782315 "Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol" maker-scaffold1767-size445491-augustus-gene-3.5-mRNA-1 2 Reactome: R-HSA-390522;Reactome: R-HSA-445355 "Striated Muscle Contraction";"Smooth Muscle Contraction" maker-scaffold2180-size383332-augustus-gene-2.5-mRNA-1 2 KEGG: 00520+5.4.2.10;MetaCyc: PWY-6749 "Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I" maker-scaffold4089-size222159-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold703-size704358-augustus-gene-4.5-mRNA-1 14 MetaCyc: PWY-8051;MetaCyc: PWY-7587;MetaCyc: PWY-7589;MetaCyc: PWY-5981;MetaCyc: PWY-8053;MetaCyc: PWY-5667;KEGG: 00561+2.3.1.51;MetaCyc: PWY-8055;KEGG: 00564+2.3.1.51;MetaCyc: PWY-7417;Reactome: R-HSA-1483166;MetaCyc: PWY-6453;MetaCyc: PWY-7782;MetaCyc: PWY-7411 "Anandamide biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"Palmitoleate biosynthesis III (cyanobacteria)";"CDP-diacylglycerol biosynthesis III";"Anandamide biosynthesis II";"CDP-diacylglycerol biosynthesis I";"Glycerolipid metabolism";"Palmitoyl ethanolamide biosynthesis";"Glycerophospholipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Synthesis of PA";"Stigma estolide biosynthesis";"Plasmalogen biosynthesis";"Phosphatidate biosynthesis (yeast)" maker-scaffold808-size662286-augustus-gene-5.5-mRNA-1 6 Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72695;Reactome: R-HSA-72702 "GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition" maker-scaffold7252-size97477-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" augustus-scaffold1400-size508774-processed-gene-3.2-mRNA-1 7 Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-76061 "RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter" maker-scaffold166-size1230825-augustus-gene-8.3-mRNA-1 3 Reactome: R-HSA-72163;Reactome: R-HSA-162710;Reactome: R-HSA-72165 "mRNA Splicing - Major Pathway";"Synthesis of glycosylphosphatidylinositol (GPI)";"mRNA Splicing - Minor Pathway" augustus-scaffold1580-size468971-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-432047 "Passive transport by Aquaporins" augustus-scaffold2411-size357562-processed-gene-2.0-mRNA-1 6 Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877 "RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase" maker-scaffold4077-size225165-augustus-gene-1.7-mRNA-1 1 Reactome: R-HSA-983231 "Factors involved in megakaryocyte development and platelet production" maker-scaffold111-size1895004-augustus-gene-15.5-mRNA-1 8 Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-166208;Reactome: R-HSA-1632852;Reactome: R-HSA-3371571;Reactome: R-HSA-5628897;Reactome: R-HSA-8943724;Reactome: R-HSA-165159 "Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"mTORC1-mediated signalling";"Macroautophagy";"HSF1-dependent transactivation";"TP53 Regulates Metabolic Genes";"Regulation of PTEN gene transcription";"mTOR signalling" maker-scaffold3646-size423018-augustus-gene-3.2-mRNA-1 2 Reactome: R-HSA-425366;Reactome: R-HSA-1483191 "Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC" maker-scaffold9958-size43351-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-8951664 "Neddylation" augustus-scaffold11144-size32148-processed-gene-0.0-mRNA-1 1 Reactome: R-HSA-163765 "ChREBP activates metabolic gene expression" maker-scaffold4283-size212534-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72187 "RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing" maker-scaffold8795-size70345-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" maker-scaffold2641-size327397-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-1369062 "ABC transporters in lipid homeostasis" maker-scaffold541-size806597-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-8955332 "Carboxyterminal post-translational modifications of tubulin" maker-scaffold1832-size429013-augustus-gene-3.2-mRNA-1 15 Reactome: R-HSA-9022692;Reactome: R-HSA-4086398;Reactome: R-HSA-9029569;Reactome: R-HSA-8943723;Reactome: R-HSA-8948700;Reactome: R-HSA-5687128;Reactome: R-HSA-8936459;Reactome: R-HSA-8934593;Reactome: R-HSA-8853884;Reactome: R-HSA-8986944;Reactome: R-HSA-1912408;Reactome: R-HSA-9018519;Reactome: R-HSA-2559580;Reactome: R-HSA-2559585;Reactome: R-HSA-5628897 "Regulation of MECP2 expression and activity";"Ca2+ pathway";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of PTEN mRNA translation";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MAPK6/MAPK4 signaling";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Regulation of RUNX1 Expression and Activity";"Transcriptional Regulation by VENTX";"Transcriptional Regulation by MECP2";"Pre-NOTCH Transcription and Translation";"Estrogen-dependent gene expression";"Oxidative Stress Induced Senescence";"Oncogene Induced Senescence";"TP53 Regulates Metabolic Genes" augustus-scaffold8748-size76881-processed-gene-0.1-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" augustus-scaffold227-size1088326-processed-gene-6.1-mRNA-1 2 Reactome: R-HSA-983168;Reactome: R-HSA-8951664 "Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation" maker-scaffold5214-size169728-augustus-gene-0.13-mRNA-1 2 KEGG: 00563+2.4.1.198;Reactome: R-HSA-162710 "Glycosylphosphatidylinositol (GPI)-anchor biosynthesis";"Synthesis of glycosylphosphatidylinositol (GPI)" maker-scaffold5370-size181238-augustus-gene-0.8-mRNA-1 2 Reactome: R-HSA-6799198;Reactome: R-HSA-611105 "Complex I biogenesis";"Respiratory electron transport" maker-scaffold2273-size380119-augustus-gene-0.3-mRNA-1 6 Reactome: R-HSA-2426168;MetaCyc: PWY-6174;Reactome: R-HSA-191273;MetaCyc: PWY-922;MetaCyc: PWY-7391;KEGG: 00900+2.7.1.36 "Activation of gene expression by SREBF (SREBP)";"Mevalonate pathway II (archaea)";"Cholesterol biosynthesis";"Mevalonate pathway I";"Isoprene biosynthesis II (engineered)";"Terpenoid backbone biosynthesis" maker-scaffold2043-size738350-augustus-gene-1.2-mRNA-1 11 Reactome: R-HSA-163615;Reactome: R-HSA-432040;Reactome: R-HSA-170670;Reactome: R-HSA-170660;Reactome: R-HSA-418555;KEGG: 00230+4.6.1.1;Reactome: R-HSA-163359;Reactome: R-HSA-164378;Reactome: R-HSA-418594;Reactome: R-HSA-418597;Reactome: R-HSA-5610787 "PKA activation";"Vasopressin regulates renal water homeostasis via Aquaporins";"Adenylate cyclase inhibitory pathway";"Adenylate cyclase activating pathway";"G alpha (s) signalling events";"Purine metabolism";"Glucagon signaling in metabolic regulation";"PKA activation in glucagon signalling";"G alpha (i) signalling events";"G alpha (z) signalling events";"Hedgehog 'off' state" augustus-scaffold9116-size57979-processed-gene-0.0-mRNA-1 2 KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936 "Indole alkaloid biosynthesis";"Psilocybin biosynthesis" maker-scaffold5701-size152153-augustus-gene-0.7-mRNA-1 6 Reactome: R-HSA-6798695;Reactome: R-HSA-9033241;Reactome: R-HSA-9615017;Reactome: R-HSA-3299685;KEGG: 00380+1.11.1.6;KEGG: 00630+1.11.1.6 "Neutrophil degranulation";"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Detoxification of Reactive Oxygen Species";"Tryptophan metabolism";"Glyoxylate and dicarboxylate metabolism" maker-scaffold3843-size237991-augustus-gene-1.9-mRNA-1 2 MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222 "Psilocybin biosynthesis";"Indole alkaloid biosynthesis" maker-scaffold804-size665225-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-2672351 "Stimuli-sensing channels" maker-scaffold2821-size315534-augustus-gene-1.1-mRNA-1 2 Reactome: R-HSA-2672351;Reactome: R-HSA-5578775 "Stimuli-sensing channels";"Ion homeostasis" maker-scaffold2200-size658018-augustus-gene-2.2-mRNA-1 17 KEGG: 00140+1.14.14.1;KEGG: 00232+1.14.14.1;MetaCyc: PWY-7826;KEGG: 00071+1.14.14.1;MetaCyc: PWY-5665;MetaCyc: PWY-6398;MetaCyc: PWY-6992;KEGG: 00590+1.14.14.1;Reactome: R-HSA-211981;KEGG: 00830+1.14.14.1;KEGG: 00980+1.14.14.1;MetaCyc: PWY-7466;KEGG: 00591+1.14.14.1;KEGG: 00380+1.14.14.1;MetaCyc: PWY-5451;KEGG: 00982+1.14.14.1;KEGG: 00627+1.14.14.1 "Steroid hormone biosynthesis";"Caffeine metabolism";"Amaryllidacea alkaloids biosynthesis";"Fatty acid degradation";"Vanillin biosynthesis I";"Melatonin degradation I";"1,5-anhydrofructose degradation";"Arachidonic acid metabolism";"Xenobiotics";"Retinol metabolism";"Metabolism of xenobiotics by cytochrome P450";"Acetone degradation III (to propane-1,2-diol)";"Linoleic acid metabolism";"Tryptophan metabolism";"Acetone degradation I (to methylglyoxal)";"Drug metabolism - cytochrome P450";"Aminobenzoate degradation" maker-scaffold2382-size463072-augustus-gene-3.10-mRNA-1 1 Reactome: R-HSA-5620912 "Anchoring of the basal body to the plasma membrane" maker-scaffold369-size941827-augustus-gene-7.5-mRNA-1 2 Reactome: R-HSA-2151201;Reactome: R-HSA-400253 "Transcriptional activation of mitochondrial biogenesis";"Circadian Clock" maker-scaffold6747-size112880-augustus-gene-0.2-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" augustus-scaffold3281-size274934-processed-gene-1.0-mRNA-1 4 KEGG: 00053+1.13.99.1;KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;Reactome: R-HSA-1855183 "Ascorbate and aldarate metabolism";"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Synthesis of IP2, IP, and Ins in the cytosol" maker-scaffold214-size1117821-augustus-gene-6.1-mRNA-1 4 Reactome: R-HSA-5660862;Reactome: R-HSA-352230;Reactome: R-HSA-71240;Reactome: R-HSA-210991 "Defective SLC7A7 causes lysinuric protein intolerance (LPI)";"Amino acid transport across the plasma membrane";"Tryptophan catabolism";"Basigin interactions" maker-scaffold24956-size15232-augustus-gene-0.2-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" maker-scaffold3789-size242384-augustus-gene-1.2-mRNA-1 1 Reactome: R-HSA-3371453 "Regulation of HSF1-mediated heat shock response" maker-scaffold1072-size591039-augustus-gene-4.10-mRNA-1 18 Reactome: R-HSA-5693554;Reactome: R-HSA-8953750;Reactome: R-HSA-5693565;Reactome: R-HSA-5685938;Reactome: R-HSA-6804756;Reactome: R-HSA-5693616;Reactome: R-HSA-3108214;Reactome: R-HSA-5685942;Reactome: R-HSA-6796648;Reactome: R-HSA-912446;Reactome: R-HSA-5689901;Reactome: R-HSA-69473;Reactome: R-HSA-1221632;Reactome: R-HSA-5693571;Reactome: R-HSA-5693579;MetaCyc: PWY-7511;Reactome: R-HSA-5693568;Reactome: R-HSA-5693607 "Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Transcriptional Regulation by E2F6";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"HDR through Single Strand Annealing (SSA)";"Regulation of TP53 Activity through Phosphorylation";"Presynaptic phase of homologous DNA pairing and strand exchange";"SUMOylation of DNA damage response and repair proteins";"HDR through Homologous Recombination (HRR)";"TP53 Regulates Transcription of DNA Repair Genes";"Meiotic recombination";"Metalloprotease DUBs";"G2/M DNA damage checkpoint";"Meiotic synapsis";"Nonhomologous End-Joining (NHEJ)";"Homologous DNA Pairing and Strand Exchange";"Protein ubiquitination";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Processing of DNA double-strand break ends" augustus-scaffold2120-size393748-processed-gene-2.0-mRNA-1 1 Reactome: R-HSA-1799339 "SRP-dependent cotranslational protein targeting to membrane" maker-scaffold6489-size120843-augustus-gene-0.3-mRNA-1 16 Reactome: R-HSA-2559582;Reactome: R-HSA-176408;Reactome: R-HSA-983168;Reactome: R-HSA-141430;Reactome: R-HSA-174084;Reactome: R-HSA-69017;Reactome: R-HSA-176409;Reactome: R-HSA-176407;Reactome: R-HSA-176412;Reactome: R-HSA-2467813;Reactome: R-HSA-174178;Reactome: R-HSA-8853884;Reactome: R-HSA-174184;Reactome: R-HSA-179409;Reactome: R-HSA-174048;Reactome: R-HSA-174154 "Senescence-Associated Secretory Phenotype (SASP)";"Regulation of APC/C activators between G1/S and early anaphase";"Antigen processing: Ubiquitination & Proteasome degradation";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Autodegradation of Cdh1 by Cdh1:APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Phosphorylation of the APC/C";"Separation of Sister Chromatids";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Transcriptional Regulation by VENTX";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC-Cdc20 mediated degradation of Nek2A";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC/C:Cdc20 mediated degradation of Securin" maker-scaffold2710-size325333-augustus-gene-2.7-mRNA-1 7 MetaCyc: PWY-5686;MetaCyc: PWY-7791;KEGG: 00240+4.1.1.23;Reactome: R-HSA-500753;KEGG: 00240+2.4.2.10;KEGG: 00983+2.4.2.10;MetaCyc: PWY-7790 "UMP biosynthesis I";"UMP biosynthesis III";"Pyrimidine metabolism";"Pyrimidine biosynthesis";"Pyrimidine metabolism";"Drug metabolism - other enzymes";"UMP biosynthesis II" maker-scaffold2685-size328707-augustus-gene-0.4-mRNA-1 1 Reactome: R-HSA-72163 "mRNA Splicing - Major Pathway" maker-scaffold252-size1067927-augustus-gene-4.4-mRNA-1 4 Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.10;Reactome: R-HSA-379716;KEGG: 00450+6.1.1.10 "Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation";"Selenocompound metabolism" maker-scaffold469-size850856-augustus-gene-4.5-mRNA-1 3 Reactome: R-HSA-193648;Reactome: R-HSA-416482;Reactome: R-HSA-194840 "NRAGE signals death through JNK";"G alpha (12/13) signalling events";"Rho GTPase cycle" maker-scaffold85-size1482738-augustus-gene-2.3-mRNA-1 1 Reactome: R-HSA-1660661 "Sphingolipid de novo biosynthesis" maker-scaffold241-size1969003-augustus-gene-18.7-mRNA-1 3 MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2;KEGG: 00740+3.1.3.2 "Phosphate acquisition";"Thiamine metabolism";"Riboflavin metabolism" maker-scaffold2763-size320693-augustus-gene-2.6-mRNA-1 7 MetaCyc: PWY-7238;MetaCyc: PWY-6724;Reactome: R-HSA-70221;MetaCyc: PWY-5941;Reactome: R-HSA-6798695;MetaCyc: PWY-6737;KEGG: 00500+2.4.1.25 "Sucrose biosynthesis II";"Starch degradation II";"Glycogen breakdown (glycogenolysis)";"Glycogen degradation II";"Neutrophil degranulation";"Starch degradation V";"Starch and sucrose metabolism" maker-scaffold2452-size353212-augustus-gene-2.4-mRNA-1 1 Reactome: R-HSA-2393930 "Phosphate bond hydrolysis by NUDT proteins" maker-scaffold5687-size150554-augustus-gene-0.5-mRNA-1 1 Reactome: R-HSA-2564830 "Cytosolic iron-sulfur cluster assembly" maker-scaffold2975-size300084-augustus-gene-2.2-mRNA-1 5 Reactome: R-HSA-73762;Reactome: R-HSA-427389;Reactome: R-HSA-6804758;Reactome: R-HSA-8943724;Reactome: R-HSA-3214815 "RNA Polymerase I Transcription Initiation";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"Regulation of TP53 Activity through Acetylation";"Regulation of PTEN gene transcription";"HDACs deacetylate histones" maker-scaffold1417-size507835-augustus-gene-4.4-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold1338-size520625-augustus-gene-4.5-mRNA-1 2 Reactome: R-HSA-8986944;Reactome: R-HSA-203927 "Transcriptional Regulation by MECP2";"MicroRNA (miRNA) biogenesis" maker-scaffold773-size679954-augustus-gene-2.2-mRNA-1 1 Reactome: R-HSA-73943 "Reversal of alkylation damage by DNA dioxygenases" maker-scaffold3185-size282763-augustus-gene-1.6-mRNA-1 3 Reactome: R-HSA-201722;Reactome: R-HSA-5689880;Reactome: R-HSA-3214847 "Formation of the beta-catenin:TCF transactivating complex";"Ub-specific processing proteases";"HATs acetylate histones" maker-scaffold44-size1734277-augustus-gene-5.4-mRNA-1 10 MetaCyc: PWY-5030;MetaCyc: PWY-7909;Reactome: R-HSA-196757;MetaCyc: PWY-3841;MetaCyc: PWY-5497;KEGG: 00670+1.5.1.5+3.5.4.9;MetaCyc: PWY-6613;MetaCyc: PWY-1722;MetaCyc: PWY-2201;KEGG: 00720+1.5.1.5+3.5.4.9 "L-histidine degradation III";"Formaldehyde oxidation VII (THF pathway)";"Metabolism of folate and pterines";"Folate transformations II (plants)";"Purine nucleobases degradation II (anaerobic)";"One carbon pool by folate";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Formate assimilation into 5,10-methylenetetrahydrofolate";"Folate transformations I";"Carbon fixation pathways in prokaryotes" maker-scaffold736-size696701-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-204005 "COPII-mediated vesicle transport" maker-scaffold5742-size147818-augustus-gene-0.1-mRNA-1 2 Reactome: R-HSA-163841;KEGG: 00900+2.1.1.100 "Gamma carboxylation, hypusine formation and arylsulfatase activation";"Terpenoid backbone biosynthesis" maker-scaffold58-size1632902-augustus-gene-12.4-mRNA-1 1 KEGG: 00970+6.1.1.16 "Aminoacyl-tRNA biosynthesis" augustus-scaffold3325-size272273-processed-gene-1.1-mRNA-1 3 Reactome: R-HSA-379716;Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.5 "Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis" maker-scaffold832-size653550-augustus-gene-5.13-mRNA-1 13 MetaCyc: PWY-4061;KEGG: 00980+2.5.1.18;MetaCyc: PWY-6842;MetaCyc: PWY-6370;Reactome: R-HSA-196836;MetaCyc: PWY-7533;KEGG: 00480+2.5.1.18+1.8.5.1;KEGG: 00983+2.5.1.18;KEGG: 00982+2.5.1.18;Reactome: R-HSA-156590;MetaCyc: PWY-2261;MetaCyc: PWY-7112;KEGG: 00053+1.8.5.1 "Glutathione-mediated detoxification I";"Metabolism of xenobiotics by cytochrome P450";"Glutathione-mediated detoxification II";"Ascorbate recycling (cytosolic)";"Vitamin C (ascorbate) metabolism";"Gliotoxin biosynthesis";"Glutathione metabolism";"Drug metabolism - other enzymes";"Drug metabolism - cytochrome P450";"Glutathione conjugation";"Ascorbate glutathione cycle";"4-hydroxy-2-nonenal detoxification";"Ascorbate and aldarate metabolism" maker-scaffold454-size870616-augustus-gene-5.1-mRNA-1 3 Reactome: R-HSA-167044;Reactome: R-HSA-5673001;Reactome: R-HSA-4420097 "Signalling to RAS";"RAF/MAP kinase cascade";"VEGFA-VEGFR2 Pathway" maker-scaffold4055-size227119-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" augustus-scaffold1140-size601982-processed-gene-2.1-mRNA-1 2 Reactome: R-HSA-383280;Reactome: R-HSA-4090294 "Nuclear Receptor transcription pathway";"SUMOylation of intracellular receptors" maker-scaffold1654-size576866-augustus-gene-2.1-mRNA-1 6 Reactome: R-HSA-9640463;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884 "Wax biosynthesis";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I" maker-scaffold1323-size528941-augustus-gene-4.9-mRNA-1 27 Reactome: R-HSA-191859;Reactome: R-HSA-9609690;Reactome: R-HSA-159227;Reactome: R-HSA-165054;Reactome: R-HSA-5619107;Reactome: R-HSA-4551638;Reactome: R-HSA-3232142;Reactome: R-HSA-168333;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-159236;Reactome: R-HSA-168271;Reactome: R-HSA-4615885;Reactome: R-HSA-1169408;Reactome: R-HSA-168325;Reactome: R-HSA-159231;Reactome: R-HSA-180910;Reactome: R-HSA-6784531;Reactome: R-HSA-4085377;Reactome: R-HSA-3301854;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-159230;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453 "snRNP Assembly";"HCMV Early Events";"Transport of the SLBP independent Mature mRNA";"Rev-mediated nuclear export of HIV RNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of chromatin organization proteins";"SUMOylation of ubiquitinylation proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of DNA replication proteins";"ISG15 antiviral mechanism";"Viral Messenger RNA Synthesis";"Transport of Mature mRNA Derived from an Intronless Transcript";"Vpr-mediated nuclear import of PICs";"tRNA processing in the nucleus";"SUMOylation of SUMOylation proteins";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"Transport of the SLBP Dependant Mature mRNA";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response" maker-scaffold704-size706041-augustus-gene-6.5-mRNA-1 3 Reactome: R-HSA-5358493;MetaCyc: PWY-6482;MetaCyc: PWY-7546 "Synthesis of diphthamide-EEF2";"Diphthamide biosynthesis I (archaea)";"Diphthamide biosynthesis II (eukaryotes)" maker-scaffold742-size696548-augustus-gene-3.8-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold3168-size284414-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-2032785;Reactome: R-HSA-8951671 "YAP1- and WWTR1 (TAZ)-stimulated gene expression";"RUNX3 regulates YAP1-mediated transcription" augustus-scaffold5769-size153049-processed-gene-0.1-mRNA-1 4 KEGG: 04660+3.1.3.16;Reactome: R-HSA-6807505;KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16 "T cell receptor signaling pathway";"RNA polymerase II transcribes snRNA genes";"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer" maker-scaffold1788-size439088-augustus-gene-3.5-mRNA-1 1 Reactome: R-HSA-1655829 "Regulation of cholesterol biosynthesis by SREBP (SREBF)" maker-scaffold5405-size164296-augustus-gene-0.5-mRNA-1 5 Reactome: R-HSA-71336;MetaCyc: PWY-8060;KEGG: 00030+4.1.2.4;Reactome: R-HSA-6798695;MetaCyc: PWY-7180 "Pentose phosphate pathway";"2-deoxy-D-ribose degradation I";"Pentose phosphate pathway";"Neutrophil degranulation";"2-deoxy-alpha-D-ribose 1-phosphate degradation" maker-scaffold3287-size276347-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-189200 "Cellular hexose transport" maker-scaffold482-size2148092-augustus-gene-2.3-mRNA-1 6 KEGG: 00564+2.7.1.107;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;MetaCyc: PWY-7039;MetaCyc: PWY-7817;KEGG: 00561+2.7.1.107 "Glycerophospholipid metabolism";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerolipid metabolism" maker-scaffold507-size818197-augustus-gene-4.1-mRNA-1 1 Reactome: R-HSA-9609523 "Insertion of tail-anchored proteins into the endoplasmic reticulum membrane" maker-scaffold27027-size8794-augustus-gene-0.1-mRNA-1 1 KEGG: 00970+6.3.5.7 "Aminoacyl-tRNA biosynthesis" maker-scaffold1728-size544128-augustus-gene-4.4-mRNA-1 3 Reactome: R-HSA-9018519;Reactome: R-HSA-381340;Reactome: R-HSA-1989781 "Estrogen-dependent gene expression";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression" maker-scaffold2627-size332153-augustus-gene-2.8-mRNA-1 4 Reactome: R-HSA-8948216;Reactome: R-HSA-1442490;Reactome: R-HSA-2022090;Reactome: R-HSA-1650814 "Collagen chain trimerization";"Collagen degradation";"Assembly of collagen fibrils and other multimeric structures";"Collagen biosynthesis and modifying enzymes" maker-scaffold2943-size303299-augustus-gene-2.3-mRNA-1 1 KEGG: 00970+6.1.1.22 "Aminoacyl-tRNA biosynthesis" maker-scaffold726-size980707-augustus-gene-2.1-mRNA-1 56 Reactome: R-HSA-9604323;Reactome: R-HSA-187577;Reactome: R-HSA-9020702;Reactome: R-HSA-350562;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-180534;Reactome: R-HSA-5689880;Reactome: R-HSA-174154;Reactome: R-HSA-174113;Reactome: R-HSA-349425;Reactome: R-HSA-8948751;Reactome: R-HSA-1169091;Reactome: R-HSA-174184;Reactome: R-HSA-382556;Reactome: R-HSA-5610785;Reactome: R-HSA-68949;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5610780;Reactome: R-HSA-180585;Reactome: R-HSA-202424;Reactome: R-HSA-195253;Reactome: R-HSA-4608870;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-8939902;Reactome: R-HSA-1234176;Reactome: R-HSA-1236974;Reactome: R-HSA-5668541;Reactome: R-HSA-5610783;Reactome: R-HSA-5632684;Reactome: R-HSA-5676590;Reactome: R-HSA-5362768;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-69601;Reactome: R-HSA-1236978;Reactome: R-HSA-4641257;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-8941858;Reactome: R-HSA-5607761;Reactome: R-HSA-68827;Reactome: R-HSA-983168;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-5658442;Reactome: R-HSA-8939236;Reactome: R-HSA-69017;Reactome: R-HSA-69481;Reactome: R-HSA-174084;Reactome: R-HSA-5358346;Reactome: R-HSA-5607764 "Negative regulation of NOTCH4 signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Interleukin-1 signaling";"Regulation of ornithine decarboxylase (ODC)";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Vpu mediated degradation of CD4";"Ub-specific processing proteases";"APC/C:Cdc20 mediated degradation of Securin";"SCF-beta-TrCP mediated degradation of Emi1";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of PTEN stability and activity";"Activation of NF-kappaB in B cells";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"ABC-family proteins mediated transport";"GLI3 is processed to GLI3R by the proteasome";"Orc1 removal from chromatin";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"Degradation of GLI1 by the proteasome";"Vif-mediated degradation of APOBEC3G";"Downstream TCR signaling";"Degradation of beta-catenin by the destruction complex";"Asymmetric localization of PCP proteins";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Regulation of RUNX2 expression and activity";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"ER-Phagosome pathway";"TNFR2 non-canonical NF-kB pathway";"Degradation of GLI2 by the proteasome";"Hedgehog 'on' state";"NIK-->noncanonical NF-kB signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of AXIN";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Regulation of RUNX3 expression and activity";"Dectin-1 mediated noncanonical NF-kB signaling";"CDT1 association with the CDC6:ORC:origin complex";"Antigen processing: Ubiquitination & Proteasome degradation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RAS by GAPs";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"CDK-mediated phosphorylation and removal of Cdc6";"G2/M Checkpoints";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hedgehog ligand biogenesis";"CLEC7A (Dectin-1) signaling" maker-scaffold2056-size396375-augustus-gene-2.5-mRNA-1 2 Reactome: R-HSA-6790901;Reactome: R-HSA-6791226 "rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold149-size1274473-augustus-gene-2.3-mRNA-1 2 Reactome: R-HSA-2408522;Reactome: R-HSA-379716 "Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation" maker-scaffold75-size1537034-augustus-gene-13.6-mRNA-1 1 Reactome: R-HSA-77289 "Mitochondrial Fatty Acid Beta-Oxidation" maker-scaffold7168-size100051-augustus-gene-0.2-mRNA-1 15 MetaCyc: PWY-7218;KEGG: 00010+2.7.1.40;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-5723;KEGG: 00620+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-6886;MetaCyc: PWY-7003;KEGG: 00230+2.7.1.40;MetaCyc: PWY-6142;MetaCyc: PWY-8004;Reactome: R-HSA-70171;MetaCyc: PWY-2221;MetaCyc: PWY-7383 "Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Rubisco shunt";"Pyruvate metabolism";"Superpathway of glucose and xylose degradation";"1-butanol autotrophic biosynthesis (engineered)";"Glycerol degradation to butanol";"Purine metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Entner-Doudoroff pathway I";"Glycolysis";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Anaerobic energy metabolism (invertebrates, cytosol)" maker-scaffold4373-size210155-augustus-gene-1.5-mRNA-1 1 Reactome: R-HSA-8876198 "RAB GEFs exchange GTP for GDP on RABs" maker-scaffold1281-size527723-augustus-gene-1.11-mRNA-1 22 MetaCyc: PWY-7238;KEGG: 00500+5.3.1.9;MetaCyc: PWY-622;MetaCyc: PWY-5054;Reactome: R-HSA-70263;MetaCyc: PWY-7385;MetaCyc: PWY-6142;Reactome: R-HSA-6798695;MetaCyc: PWY-5659;MetaCyc: PWY-6981;KEGG: 00010+5.3.1.9;Reactome: R-HSA-70171;Reactome: R-HSA-5628897;MetaCyc: PWY-621;MetaCyc: PWY-7347;MetaCyc: PWY-8013;KEGG: 00520+5.3.1.9;MetaCyc: PWY-3801;KEGG: 00030+5.3.1.9;MetaCyc: PWY-6992;MetaCyc: PWY-5384;MetaCyc: PWY-5514 "Sucrose biosynthesis II";"Starch and sucrose metabolism";"Starch biosynthesis";"D-sorbitol biosynthesis I";"Gluconeogenesis";"1,3-propanediol biosynthesis (engineered)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Neutrophil degranulation";"GDP-mannose biosynthesis";"Chitin biosynthesis";"Glycolysis / Gluconeogenesis";"Glycolysis";"TP53 Regulates Metabolic Genes";"Sucrose degradation III (sucrose invertase)";"Sucrose biosynthesis III";"UDP-N-acetyl-D-galactosamine biosynthesis III";"Amino sugar and nucleotide sugar metabolism";"Sucrose degradation II (sucrose synthase)";"Pentose phosphate pathway";"1,5-anhydrofructose degradation";"Sucrose degradation IV (sucrose phosphorylase)";"UDP-N-acetyl-D-galactosamine biosynthesis II" maker-scaffold1804-size435525-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-432047 "Passive transport by Aquaporins" maker-scaffold1453-size499979-augustus-gene-3.5-mRNA-1 5 Reactome: R-HSA-2426168;Reactome: R-HSA-9029558;Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-75105 "Activation of gene expression by SREBF (SREBP)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"Fatty acyl-CoA biosynthesis" augustus-scaffold85-size1482738-processed-gene-13.0-mRNA-1 2 Reactome: R-HSA-6807878;Reactome: R-HSA-445095 "COPI-mediated anterograde transport";"Interaction between L1 and Ankyrins" maker-scaffold2509-size346278-augustus-gene-1.9-mRNA-1 2 KEGG: 00511+3.2.1.24;Reactome: R-HSA-8853383 "Other glycan degradation";"Lysosomal oligosaccharide catabolism" maker-scaffold2708-size326647-augustus-gene-1.3-mRNA-1 10 Reactome: R-HSA-975634;Reactome: R-HSA-6798695;Reactome: R-HSA-977225;Reactome: R-HSA-3000171;KEGG: 00230+3.5.2.17;MetaCyc: PWY-7849;MetaCyc: PWY-7394;Reactome: R-HSA-2453902;Reactome: R-HSA-2453864;MetaCyc: PWY-5691 "Retinoid metabolism and transport";"Neutrophil degranulation";"Amyloid fiber formation";"Non-integrin membrane-ECM interactions";"Purine metabolism";"Urate conversion to allantoin III";"Urate conversion to allantoin II";"The canonical retinoid cycle in rods (twilight vision)";"Retinoid cycle disease events";"Urate conversion to allantoin I" maker-scaffold576-size780973-augustus-gene-2.4-mRNA-1 2 Reactome: R-HSA-8949613;Reactome: R-HSA-163210 "Cristae formation";"Formation of ATP by chemiosmotic coupling" augustus-scaffold17396-size13729-processed-gene-0.0-mRNA-1 2 Reactome: R-HSA-983168;MetaCyc: PWY-7511 "Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination" maker-scaffold6443-size121713-augustus-gene-0.4-mRNA-1 6 Reactome: R-HSA-6798695;KEGG: 00630+1.11.1.6;KEGG: 00380+1.11.1.6;Reactome: R-HSA-3299685;Reactome: R-HSA-9033241;Reactome: R-HSA-9615017 "Neutrophil degranulation";"Glyoxylate and dicarboxylate metabolism";"Tryptophan metabolism";"Detoxification of Reactive Oxygen Species";"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes" maker-scaffold24956-size15232-augustus-gene-0.3-mRNA-1 6 MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7656;MetaCyc: PWY-7782 "Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis" maker-scaffold6360-size124952-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-216083 "Integrin cell surface interactions" maker-scaffold2201-size380283-augustus-gene-1.3-mRNA-1 1 Reactome: R-HSA-420029 "Tight junction interactions" maker-scaffold1797-size437762-augustus-gene-1.6-mRNA-1 2 MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4 "Cellulose degradation II (fungi)";"Starch and sucrose metabolism" maker-scaffold6339-size205276-augustus-gene-1.2-mRNA-1 2 MetaCyc: PWY-7511;Reactome: R-HSA-983168 "Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation" maker-scaffold935-size623014-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-1660662;KEGG: 00511+3.2.1.45;KEGG: 00600+3.2.1.45 "Glycosphingolipid metabolism";"Other glycan degradation";"Sphingolipid metabolism" maker-scaffold7056-size103080-augustus-gene-0.5-mRNA-1 13 Reactome: R-HSA-5358346;Reactome: R-HSA-382556;Reactome: R-HSA-8866654;Reactome: R-HSA-5689877;Reactome: R-HSA-5678895;Reactome: R-HSA-532668;Reactome: R-HSA-8876725;Reactome: R-HSA-6798695;Reactome: R-HSA-110320;Reactome: R-HSA-5362768;Reactome: R-HSA-3371511;Reactome: R-HSA-5689896;Reactome: R-HSA-9646399 "Hedgehog ligand biogenesis";"ABC-family proteins mediated transport";"E3 ubiquitin ligases ubiquitinate target proteins";"Josephin domain DUBs";"Defective CFTR causes cystic fibrosis";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Protein methylation";"Neutrophil degranulation";"Translesion Synthesis by POLH";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"HSF1 activation";"Ovarian tumor domain proteases";"Aggrephagy" maker-scaffold6737-size114156-augustus-gene-0.1-mRNA-1 3 MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2;KEGG: 00740+3.1.3.2 "Phosphate acquisition";"Thiamine metabolism";"Riboflavin metabolism" maker-scaffold2576-size340169-augustus-gene-2.12-mRNA-1 6 Reactome: R-HSA-110373;Reactome: R-HSA-110362;Reactome: R-HSA-73933;Reactome: R-HSA-5651801;Reactome: R-HSA-73930;Reactome: R-HSA-110357 "Resolution of AP sites via the multiple-nucleotide patch replacement pathway";"POLB-Dependent Long Patch Base Excision Repair";"Resolution of Abasic Sites (AP sites)";"PCNA-Dependent Long Patch Base Excision Repair";"Abasic sugar-phosphate removal via the single-nucleotide replacement pathway";"Displacement of DNA glycosylase by APEX1" maker-scaffold244-size1102454-augustus-gene-2.5-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" augustus-scaffold1310-size523666-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-191859 "snRNP Assembly" maker-scaffold332-size968382-augustus-gene-6.2-mRNA-1 1 Reactome: R-HSA-69273 "Cyclin A/B1/B2 associated events during G2/M transition" maker-scaffold1293-size527776-augustus-gene-0.1-mRNA-1 1 MetaCyc: PWY-7511 "Protein ubiquitination" maker-scaffold210-size1121378-augustus-gene-4.2-mRNA-1 2 MetaCyc: PWY-6938;Reactome: R-HSA-430039 "NADH repair";"mRNA decay by 5' to 3' exoribonuclease" maker-scaffold268-size1038485-augustus-gene-8.1-mRNA-1 1 Reactome: R-HSA-74217 "Purine salvage" maker-scaffold2522-size344221-augustus-gene-0.4-mRNA-1 2 Reactome: R-HSA-2142691;Reactome: R-HSA-2142700 "Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Synthesis of Lipoxins (LX)" maker-scaffold2290-size369435-augustus-gene-2.5-mRNA-1 5 Reactome: R-HSA-75105;Reactome: R-HSA-2426168;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-9029558 "Fatty acyl-CoA biosynthesis";"Activation of gene expression by SREBF (SREBP)";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis" augustus-scaffold8962-size107123-processed-gene-0.1-mRNA-1 1 Reactome: R-HSA-389957 "Prefoldin mediated transfer of substrate to CCT/TriC" maker-scaffold10920-size32279-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-2468052 "Establishment of Sister Chromatid Cohesion" maker-scaffold3208-size280446-augustus-gene-1.5-mRNA-1 7 MetaCyc: PWY-5466;MetaCyc: PWY-7214;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5469 "Matairesinol biosynthesis";"Baicalein degradation (hydrogen peroxide detoxification)";"Betanidin degradation";"Luteolin triglucuronide degradation";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Sesamin biosynthesis" maker-scaffold864-size644941-augustus-gene-5.5-mRNA-1 4 Reactome: R-HSA-2468052;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-2470946 "Establishment of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin" maker-scaffold650-size736137-augustus-gene-6.5-mRNA-1 13 MetaCyc: PWY-7227;KEGG: 00240+1.17.4.1;MetaCyc: PWY-7222;KEGG: 00480+1.17.4.1;MetaCyc: PWY-6545;MetaCyc: PWY-7210;Reactome: R-HSA-499943;MetaCyc: PWY-7220;KEGG: 00983+1.17.4.1;KEGG: 00230+1.17.4.1;MetaCyc: PWY-7184;MetaCyc: PWY-7226;MetaCyc: PWY-7198 "Adenosine deoxyribonucleotides de novo biosynthesis";"Pyrimidine metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Glutathione metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Interconversion of nucleotide di- and triphosphates";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Drug metabolism - other enzymes";"Purine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV" augustus-scaffold573-size939396-processed-gene-7.1-mRNA-1 12 MetaCyc: PWY-1861;Reactome: R-HSA-70171;KEGG: 00010+4.1.2.13;MetaCyc: PWY-6142;MetaCyc: PWY-7385;Reactome: R-HSA-70263;KEGG: 00030+4.1.2.13;KEGG: 00680+4.1.2.13;MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00051+4.1.2.13;KEGG: 00710+4.1.2.13 "Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Glycolysis";"Glycolysis / Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"1,3-propanediol biosynthesis (engineered)";"Gluconeogenesis";"Pentose phosphate pathway";"Methane metabolism";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Fructose and mannose metabolism";"Carbon fixation in photosynthetic organisms" maker-scaffold6119-size141232-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-204626 "Hypusine synthesis from eIF5A-lysine" maker-scaffold77-size1526962-augustus-gene-2.8-mRNA-1 13 Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-6791226;Reactome: R-HSA-975957 "Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" maker-scaffold502-size874768-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-6803157 "Antimicrobial peptides" maker-scaffold1430-size498059-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-156588 "Glucuronidation" augustus-scaffold3889-size248034-processed-gene-1.2-mRNA-1 1 Reactome: R-HSA-8856828 "Clathrin-mediated endocytosis" maker-scaffold1257-size534685-augustus-gene-4.2-mRNA-1 7 Reactome: R-HSA-2644606;MetaCyc: PWY-7511;Reactome: R-HSA-2894862;Reactome: R-HSA-2979096;Reactome: R-HSA-2691232;Reactome: R-HSA-9013507;Reactome: R-HSA-2122948 "Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Protein ubiquitination";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus" maker-scaffold4077-size225165-augustus-gene-1.8-mRNA-1 1 Reactome: R-HSA-6798163 "Choline catabolism" maker-scaffold2551-size687948-augustus-gene-5.8-mRNA-1 10 KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23;Reactome: R-HSA-2206292;KEGG: 00531+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00604+3.2.1.23;MetaCyc: PWY-6807;Reactome: R-HSA-2024096;Reactome: R-HSA-2160916;KEGG: 00600+3.2.1.23 "Other glycan degradation";"Galactose metabolism";"MPS VII - Sly syndrome";"Glycosaminoglycan degradation";"Neutrophil degranulation";"Glycosphingolipid biosynthesis - ganglio series";"Xyloglucan degradation II (exoglucanase)";"HS-GAG degradation";"Hyaluronan uptake and degradation";"Sphingolipid metabolism" maker-scaffold5944-size138980-augustus-gene-0.7-mRNA-1 3 KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2 "Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism" maker-scaffold538-size806317-augustus-gene-2.2-mRNA-1 12 Reactome: R-HSA-2894862;Reactome: R-HSA-1251985;Reactome: R-HSA-2644606;Reactome: R-HSA-75893;Reactome: R-HSA-2660826;Reactome: R-HSA-1442490;Reactome: R-HSA-2122948;Reactome: R-HSA-177929;Reactome: R-HSA-2691232;Reactome: R-HSA-5362798;Reactome: R-HSA-982772;Reactome: R-HSA-193692 "Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Nuclear signaling by ERBB4";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"TNF signaling";"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Collagen degradation";"Activated NOTCH1 Transmits Signal to the Nucleus";"Signaling by EGFR";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Release of Hh-Np from the secreting cell";"Growth hormone receptor signaling";"Regulated proteolysis of p75NTR" maker-scaffold2345-size361280-augustus-gene-1.2-mRNA-1 1 KEGG: 00480+3.4.11.2 "Glutathione metabolism" augustus-scaffold531-size812438-processed-gene-1.5-mRNA-1 1 Reactome: R-HSA-432722 "Golgi Associated Vesicle Biogenesis" maker-scaffold1324-size935454-augustus-gene-6.2-mRNA-1 1 KEGG: 00230+4.6.1.2 "Purine metabolism" maker-scaffold2369-size431505-augustus-gene-3.8-mRNA-1 1 Reactome: R-HSA-5689603 "UCH proteinases" maker-scaffold5724-size147217-augustus-gene-0.5-mRNA-1 25 Reactome: R-HSA-8878166;Reactome: R-HSA-8939256;Reactome: R-HSA-8941333;Reactome: R-HSA-8951936;Reactome: R-HSA-8931987;Reactome: R-HSA-8941858;Reactome: R-HSA-8939247;Reactome: R-HSA-8941284;Reactome: R-HSA-8939242;Reactome: R-HSA-8940973;Reactome: R-HSA-9018519;Reactome: R-HSA-8939243;Reactome: R-HSA-9616222;Reactome: R-HSA-8949275;Reactome: R-HSA-8939236;Reactome: R-HSA-8941326;Reactome: R-HSA-8941332;Reactome: R-HSA-8939902;Reactome: R-HSA-8934593;Reactome: R-HSA-8877330;Reactome: R-HSA-8936459;Reactome: R-HSA-8951911;Reactome: R-HSA-8935964;Reactome: R-HSA-8939245;Reactome: R-HSA-8939246 "Transcriptional regulation by RUNX2";"RUNX1 regulates transcription of genes involved in WNT signaling";"RUNX2 regulates genes involved in differentiation of myeloid cells";"RUNX3 regulates p14-ARF";"RUNX1 regulates estrogen receptor mediated transcription";"Regulation of RUNX3 expression and activity";"RUNX1 regulates transcription of genes involved in interleukin signaling";"RUNX2 regulates chondrocyte maturation";"RUNX1 regulates transcription of genes involved in differentiation of keratinocytes";"RUNX2 regulates osteoblast differentiation";"Estrogen-dependent gene expression";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Transcriptional regulation of granulopoiesis";"RUNX3 Regulates Immune Response and Cell Migration";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"RUNX2 regulates bone development";"RUNX2 regulates genes involved in cell migration";"Regulation of RUNX2 expression and activity";"Regulation of RUNX1 Expression and Activity";"RUNX1 and FOXP3 control the development of regulatory T lymphocytes (Tregs)";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"RUNX3 regulates RUNX1-mediated transcription";"RUNX1 regulates expression of components of tight junctions";"RUNX1 regulates transcription of genes involved in BCR signaling";"RUNX1 regulates transcription of genes involved in differentiation of myeloid cells" maker-scaffold6251-size131294-augustus-gene-0.5-mRNA-1 2 Reactome: R-HSA-390471;Reactome: R-HSA-1660662 "Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism" maker-scaffold1829-size431662-augustus-gene-2.2-mRNA-1 5 Reactome: R-HSA-75896;MetaCyc: PWY-7782;Reactome: R-HSA-9033500;Reactome: R-HSA-9033241;KEGG: 00565+2.5.1.26 "Plasmalogen biosynthesis";"Plasmalogen biosynthesis";"TYSND1 cleaves peroxisomal proteins";"Peroxisomal protein import";"Ether lipid metabolism" maker-scaffold5018-size182611-augustus-gene-0.10-mRNA-1 4 Reactome: R-HSA-6781823;Reactome: R-HSA-6782210;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135 "Formation of TC-NER Pre-Incision Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER" maker-scaffold292-size1007774-augustus-gene-3.4-mRNA-1 1 Reactome: R-HSA-6782315 "tRNA modification in the nucleus and cytosol" maker-scaffold1757-size445936-augustus-gene-3.2-mRNA-1 1 Reactome: R-HSA-71288 "Creatine metabolism" maker-scaffold4812-size187152-augustus-gene-0.5-mRNA-1 26 Reactome: R-HSA-5663220;Reactome: R-HSA-983189;Reactome: R-HSA-5626467;Reactome: R-HSA-2500257;Reactome: R-HSA-6811434;Reactome: R-HSA-9619483;Reactome: R-HSA-3371497;Reactome: R-HSA-437239;Reactome: R-HSA-2132295;Reactome: R-HSA-9609736;Reactome: R-HSA-9646399;Reactome: R-HSA-1445148;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-8852276;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-389960;Reactome: R-HSA-6811436;Reactome: R-HSA-9609690;Reactome: R-HSA-6807878;Reactome: R-HSA-389977;Reactome: R-HSA-380320;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-8955332 "RHO GTPases Activate Formins";"Kinesins";"RHO GTPases activate IQGAPs";"Resolution of Sister Chromatid Cohesion";"COPI-dependent Golgi-to-ER retrograde traffic";"Activation of AMPK downstream of NMDARs";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recycling pathway of L1";"MHC class II antigen presentation";"Assembly and cell surface presentation of NMDA receptors";"Aggrephagy";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"Formation of tubulin folding intermediates by CCT/TriC";"COPI-independent Golgi-to-ER retrograde traffic";"HCMV Early Events";"COPI-mediated anterograde transport";"Post-chaperonin tubulin folding pathway";"Recruitment of NuMA to mitotic centrosomes";"Cilium Assembly";"Gap junction assembly";"Carboxyterminal post-translational modifications of tubulin" maker-scaffold1000-size599464-augustus-gene-2.1-mRNA-1 3 KEGG: 00730+3.1.3.1;KEGG: 00790+3.1.3.1;MetaCyc: PWY-5491 "Thiamine metabolism";"Folate biosynthesis";"Diethylphosphate degradation" maker-scaffold1476-size490429-augustus-gene-3.7-mRNA-1 1 Reactome: R-HSA-162710 "Synthesis of glycosylphosphatidylinositol (GPI)" maker-scaffold3237-size443196-augustus-gene-3.2-mRNA-1 14 Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-168333;Reactome: R-HSA-68877;Reactome: R-HSA-9634638;Reactome: R-HSA-9648025;Reactome: R-HSA-2173788;Reactome: R-HSA-69273;Reactome: R-HSA-450520;Reactome: R-HSA-165054;Reactome: R-HSA-141444;Reactome: R-HSA-5687128;Reactome: R-HSA-3769402 "Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Mitotic Prometaphase";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"EML4 and NUDC in mitotic spindle formation";"Downregulation of TGF-beta receptor signaling";"Cyclin A/B1/B2 associated events during G2/M transition";"HuR (ELAVL1) binds and stabilizes mRNA";"Rev-mediated nuclear export of HIV RNA";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"MAPK6/MAPK4 signaling";"Deactivation of the beta-catenin transactivating complex" maker-scaffold60124-size3035-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-8949664 "Processing of SMDT1" maker-scaffold13965-size18010-augustus-gene-0.1-mRNA-1 1 Reactome: R-HSA-194840 "Rho GTPase cycle" maker-scaffold1903-size425631-augustus-gene-3.10-mRNA-1 1 Reactome: R-HSA-9033241 "Peroxisomal protein import" maker-scaffold2943-size303299-augustus-gene-2.4-mRNA-1 7 MetaCyc: PWY-5097;MetaCyc: PWY-8088;Reactome: R-HSA-389661;KEGG: 00261+4.3.3.7;MetaCyc: PWY-2941;MetaCyc: PWY-2942;KEGG: 00300+4.3.3.7 "L-lysine biosynthesis VI";"Dipicolinate biosynthesis";"Glyoxylate metabolism and glycine degradation";"Monobactam biosynthesis";"L-lysine biosynthesis II";"L-lysine biosynthesis III";"Lysine biosynthesis" maker-scaffold1755-size453082-augustus-gene-3.6-mRNA-1 16 Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-2408557;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-1799339;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-6791226 "Eukaryotic Translation Termination";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Selenocysteine synthesis";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"SRP-dependent cotranslational protein targeting to membrane";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol" maker-scaffold325-size972641-augustus-gene-0.2-mRNA-1 2 Reactome: R-HSA-202733;Reactome: R-HSA-416993 "Cell surface interactions at the vascular wall";"Trafficking of GluR2-containing AMPA receptors" maker-scaffold3957-size238393-augustus-gene-0.3-mRNA-1 11 Reactome: R-HSA-350054;Reactome: R-HSA-8941856;Reactome: R-HSA-2173796;Reactome: R-HSA-2122947;Reactome: R-HSA-9013508;Reactome: R-HSA-1912408;Reactome: R-HSA-72163;Reactome: R-HSA-9013695;Reactome: R-HSA-2644606;Reactome: R-HSA-210744;Reactome: R-HSA-2894862 "Notch-HLH transcription pathway";"RUNX3 regulates NOTCH signaling";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"NOTCH1 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"Pre-NOTCH Transcription and Translation";"mRNA Splicing - Major Pathway";"NOTCH4 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants" augustus-scaffold142-size1311389-processed-gene-6.0-mRNA-1 2 Reactome: R-HSA-418890;Reactome: R-HSA-3295583 "Role of second messengers in netrin-1 signaling";"TRP channels" maker-scaffold1315-size524712-augustus-gene-1.1-mRNA-1 1 Reactome: R-HSA-2151201 "Transcriptional activation of mitochondrial biogenesis" maker-scaffold7706-size85933-augustus-gene-0.2-mRNA-1 3 KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16 "Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway" augustus-scaffold2342-size360516-processed-gene-0.0-mRNA-1 7 Reactome: R-HSA-71403;KEGG: 00310+2.3.1.61;Reactome: R-HSA-389661;MetaCyc: PWY-5084;KEGG: 00380+2.3.1.61;KEGG: 00020+2.3.1.61;Reactome: R-HSA-71064 "Citric acid cycle (TCA cycle)";"Lysine degradation";"Glyoxylate metabolism and glycine degradation";"2-oxoglutarate decarboxylation to succinyl-CoA";"Tryptophan metabolism";"Citrate cycle (TCA cycle)";"Lysine catabolism" maker-scaffold2821-size315534-augustus-gene-2.5-mRNA-1 6 KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;MetaCyc: PWY-7782;MetaCyc: PWY-7656 "Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis" maker-scaffold3324-size275644-augustus-gene-1.4-mRNA-1 2 Reactome: R-HSA-8876198;Reactome: R-HSA-204005 "RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport" maker-scaffold1173-size557922-augustus-gene-1.6-mRNA-1 16 Reactome: R-HSA-983168;Reactome: R-HSA-176408;Reactome: R-HSA-2559582;Reactome: R-HSA-176407;Reactome: R-HSA-176409;Reactome: R-HSA-69017;Reactome: R-HSA-174084;Reactome: R-HSA-141430;Reactome: R-HSA-174178;Reactome: R-HSA-176412;Reactome: R-HSA-2467813;Reactome: R-HSA-174154;Reactome: R-HSA-174048;Reactome: R-HSA-179409;Reactome: R-HSA-174184;Reactome: R-HSA-8853884 "Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of APC/C activators between G1/S and early anaphase";"Senescence-Associated Secretory Phenotype (SASP)";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of mitotic proteins";"CDK-mediated phosphorylation and removal of Cdc6";"Autodegradation of Cdh1 by Cdh1:APC/C";"Inactivation of APC/C via direct inhibition of the APC/C complex";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Phosphorylation of the APC/C";"Separation of Sister Chromatids";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC-Cdc20 mediated degradation of Nek2A";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Transcriptional Regulation by VENTX" augustus-scaffold1423-size500547-processed-gene-4.1-mRNA-1 33 Reactome: R-HSA-159230;Reactome: R-HSA-2500257;Reactome: R-HSA-5578749;Reactome: R-HSA-9610379;Reactome: R-HSA-168276;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-180910;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-4615885;Reactome: R-HSA-9648025;Reactome: R-HSA-168333;Reactome: R-HSA-4551638;Reactome: R-HSA-165054;Reactome: R-HSA-9609690;Reactome: R-HSA-5663220;Reactome: R-HSA-3371453;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168325;Reactome: R-HSA-168271;Reactome: R-HSA-2467813;Reactome: R-HSA-159236;Reactome: R-HSA-1169408;Reactome: R-HSA-68877;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-5619107;Reactome: R-HSA-191859;Reactome: R-HSA-159227 "Transport of the SLBP Dependant Mature mRNA";"Resolution of Sister Chromatid Cohesion";"Transcriptional regulation by small RNAs";"HCMV Late Events";"NS1 Mediated Effects on Host Pathways";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Vpr-mediated nuclear import of PICs";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of DNA replication proteins";"EML4 and NUDC in mitotic spindle formation";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of chromatin organization proteins";"Rev-mediated nuclear export of HIV RNA";"HCMV Early Events";"RHO GTPases Activate Formins";"Regulation of HSF1-mediated heat shock response";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Viral Messenger RNA Synthesis";"Transport of Ribonucleoproteins into the Host Nucleus";"Separation of Sister Chromatids";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"ISG15 antiviral mechanism";"Mitotic Prometaphase";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"snRNP Assembly";"Transport of the SLBP independent Mature mRNA" maker-scaffold877-size639508-augustus-gene-5.3-mRNA-1 1 Reactome: R-HSA-6799198 "Complex I biogenesis" maker-scaffold1230-size543710-augustus-gene-2.6-mRNA-1 2 Reactome: R-HSA-6811434;Reactome: R-HSA-983189 "COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins" augustus-scaffold4663-size269850-processed-gene-1.2-mRNA-1 1 KEGG: 00500+2.4.1.15 "Starch and sucrose metabolism" maker-scaffold3295-size275485-augustus-gene-1.4-mRNA-1 1 Reactome: R-HSA-3214858 "RMTs methylate histone arginines" maker-scaffold15-size2120621-augustus-gene-8.1-mRNA-1 1 Reactome: R-HSA-201681 "TCF dependent signaling in response to WNT" augustus-scaffold1721-size452177-processed-gene-2.1-mRNA-1 1 KEGG: 00970+6.1.1.2 "Aminoacyl-tRNA biosynthesis" maker-scaffold94-size2257390-augustus-gene-14.6-mRNA-1 1 Reactome: R-HSA-8949664 "Processing of SMDT1" maker-scaffold2325-size364954-augustus-gene-2.5-mRNA-1 4 KEGG: 00030+1.1.1.49;MetaCyc: PWY-7268;KEGG: 00480+1.1.1.49;MetaCyc: PWY-8004 "Pentose phosphate pathway";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Glutathione metabolism";"Entner-Doudoroff pathway I" maker-scaffold6015-size137539-augustus-gene-0.3-mRNA-1 1 Reactome: R-HSA-71403 "Citric acid cycle (TCA cycle)" maker-scaffold120-size1377678-augustus-gene-9.1-mRNA-1 1 Reactome: R-HSA-8955332 "Carboxyterminal post-translational modifications of tubulin" maker-scaffold2158-size385011-augustus-gene-2.6-mRNA-1 1 Reactome: R-HSA-6798695 "Neutrophil degranulation" maker-scaffold8257-size74102-augustus-gene-0.1-mRNA-1 3 Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276 "Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination" maker-scaffold3932-size232135-augustus-gene-1.4-mRNA-1 3 Reactome: R-HSA-110329;Reactome: R-HSA-110357;Reactome: R-HSA-110328 "Cleavage of the damaged pyrimidine";"Displacement of DNA glycosylase by APEX1";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine"