The following files were retrieved from NCBI https://www.ncbi.nlm.nih.gov/assembly/Clitarchus_hookeri_Maker_annotations_pep Information about this dataset can be found here: https://i5k.nal.usda.gov/bio_data/836543 Information about the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748 Instruction for running the functional annotation pipeline can be found here: https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html The file Clitarchus_hookeri_Maker_annotations_pep.fa was post-processed with agbase/goanna:2.2 (https://hub.docker.com/repository/docker/agbase/goanna) docker container to generate GO functional annotation. GOanna was run with these options: -a,invertebrates; -f,3; -g,70; -k,9; -q,70; -r,1.2. The resulting files are: Clitarchus_hookeri_Maker_annotations_pep.asn Clitarchus_hookeri_Maker_annotations_pep.gaf.tsv Clitarchus_hookeri_Maker_annotations_pep.html Clitarchus_hookeri_Maker_annotations_pep.tsv The file Clitarchus_hookeri_Maker_annotations_pep.fa was post-processed with agbase/interproscan:5.45-80_2 (https://hub.docker.com/repository/docker/agbase/interproscan) docker container to generate GO and pathway functional annotation. The resulting files are: Clitarchus_hookeri_Maker_annotations_pep_acc_go_counts.txt Clitarchus_hookeri_Maker_annotations_pep_acc_interpro_counts.txt Clitarchus_hookeri_Maker_annotations_pep_acc_pathway_counts.txt Clitarchus_hookeri_Maker_annotations_pep.err Clitarchus_hookeri_Maker_annotations_pep_gaf.txt Clitarchus_hookeri_Maker_annotations_pep.gff3 Clitarchus_hookeri_Maker_annotations_pep_go_counts.txt Clitarchus_hookeri_Maker_annotations_pep_interpro_counts.txt Clitarchus_hookeri_Maker_annotations_pep.json Clitarchus_hookeri_Maker_annotations_pep_pathway_counts.txt Clitarchus_hookeri_Maker_annotations_pep.tsv Clitarchus_hookeri_Maker_annotations_pep.xml Clitarchus_hookeri_Maker_annotations_pep.html.tar.gz Clitarchus_hookeri_Maker_annotations_pep.svg.tar.gz The file Clitarchus_hookeri_Maker_annotations_pep.fa was post-processed with agbase/kobas:3.0.3_0 (https://hub.docker.com/repository/docker/agbase/kobas) docker container to generate pathway functional annotation. The resulting files are: Clitarchus_hookeri_Maker_annotations_pep_KOBAS_acc_pathways.tsv Clitarchus_hookeri_Maker_annotations_pep_KOBAS_pathways_acc.tsv Clitarchus_hookeri_Maker_annotations_pep_KOBAS.txt The GAF output files from InterProScan and GOanna were combined into a single GAF file using agbase/combine_gafs:1.0 (https://hub.docker.com/repository/docker/agbase/combine_gafs) Clitarchus_hookeri_Maker_annotations_pep_complete.gaf.tsv