# File description for release of OGSv1.1 * .gff - gff file of official gene set * transcript.fa - transcripts of all types of RNAs * cds.fa - cds sequences of mRNA * peptide.fa - peptide seuqences of mRNA * IDmapping.csv - ID mapping table between OGSv1.0 and Maker gene predicitons * statistics.csv - Statistics along with merging procedure # Quality control for manually curated annotations from Web Apollo ## Automated correction for the following errors: * Redundant gene length (22 models) * A child feature over a coordinate boundary of its parent model (6 models) * Pseudogenes that were incorrectly formatted as gene (5 models) * Non-coding RNAs that were incorrectly formatted as mRNAs (8 models) * Models that share coding regions, but were incorrectly formatted as separate genes (13 models) * Models that do not share coding regions, but were incorrectly formatted as isoforms (16 models) * Models that do not have replace tag (13 models) # OGS construction by integrating the models of manual curations from Web Apollo and Maker gene predictions Maker models were replaced by the models of manual curations from Web Apollo according to 'replace' attributes. The merged gff file was sorted, and IDs were re-assigned by following the order of the sorted file for the final gff of the official gene set. # Post-processing of sequence modification The transcript, CDS and peptide fasta sequences of locus LDEC020116 were modified to include an inserted sequence. #Updates from OGSv1.0 to OGSv1.1 Addition of precursor miRNA predictions to the OGS.