Accession_ID	Pathway_Count	Pathway_IDs	Pathway_Names
JAMg_model_2849.1	4	Reactome: R-HSA-77595;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-73856	"Processing of Intronless Pre-mRNAs";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination"
JAMg_model_3430.3	1	Reactome: R-HSA-381038	"XBP1(S) activates chaperone genes"
JAMg_model_10547.2	6	Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257	"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion"
JAMg_model_10600.4	14	Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5687128;Reactome: R-HSA-203927;Reactome: R-HSA-5628897;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-1912408;Reactome: R-HSA-4086398;Reactome: R-HSA-426486;Reactome: R-HSA-426496;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519	"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MAPK6/MAPK4 signaling";"MicroRNA (miRNA) biogenesis";"TP53 Regulates Metabolic Genes";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Pre-NOTCH Transcription and Translation";"Ca2+ pathway";"Small interfering RNA (siRNA) biogenesis";"Post-transcriptional silencing by small RNAs";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression"
JAMg_model_291.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_14209.1	3	KEGG: 00511+3.2.1.51;MetaCyc: PWY-6807;Reactome: R-HSA-6798695	"Other glycan degradation";"Xyloglucan degradation II (exoglucanase)";"Neutrophil degranulation"
JAMg_model_9920.1	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_4083.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_2850.1	6	Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702	"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition"
JAMg_model_10507.2	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878	"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport"
JAMg_model_2463.1	1	Reactome: R-HSA-427975	"Proton/oligopeptide cotransporters"
JAMg_model_12706.1	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_7829.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_4486.1	4	Reactome: R-HSA-72086;Reactome: R-HSA-167160;MetaCyc: PWY-7375;Reactome: R-HSA-77075	"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Mrna capping I";"RNA Pol II CTD phosphorylation and interaction with CE"
JAMg_model_15493.4	20	MetaCyc: PWY-7007;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7606;MetaCyc: PWY-7726;MetaCyc: PWY-7858;KEGG: 00071+1.3.3.6;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7288;MetaCyc: PWY-7338;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-7291;MetaCyc: PWY-5136;Reactome: R-HSA-9033241;MetaCyc: PWY-6920;MetaCyc: PWY-7340;KEGG: 00410+1.3.3.6;MetaCyc: PWY-6837;MetaCyc: PWY-7574;MetaCyc: PWY-7337	"Methyl ketone biosynthesis (engineered)";"Propanoate metabolism";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(5Z)-dodecenoate biosynthesis II";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"Fatty acid beta-oxidation VII (yeast peroxisome)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Fatty acid beta-oxidation II (plant peroxisome)";"Peroxisomal protein import";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"beta-Alanine metabolism";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)"
JAMg_model_2389.2	1	Reactome: R-HSA-3238698	"WNT ligand biogenesis and trafficking"
JAMg_model_18048.3	5	Reactome: R-HSA-70171;MetaCyc: PWY-6906;MetaCyc: PWY-5514;KEGG: 00520+3.5.99.6;MetaCyc: PWY-6855	"Glycolysis";"Chitin derivatives degradation";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)"
JAMg_model_10797.10	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_10759.1	8	Reactome: R-HSA-606279;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-6783310;Reactome: R-HSA-2467813	"Deposition of new CENPA-containing nucleosomes at the centromere";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Fanconi Anemia Pathway";"Separation of Sister Chromatids"
JAMg_model_18319.1	13	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_20130.1	5	Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68867;Reactome: R-HSA-176187	"Unwinding of DNA";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress"
JAMg_model_8875.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_11653.1	6	KEGG: 00930+3.1.1.17;KEGG: 00053+3.1.1.17;MetaCyc: PWY-5530;MetaCyc: PWY-2221;MetaCyc: PWY-7165;KEGG: 00030+3.1.1.17	"Caprolactam degradation";"Ascorbate and aldarate metabolism";"Sorbitol biosynthesis II";"Entner-Doudoroff pathway III (semi-phosphorylative)";"L-ascorbate biosynthesis VI (engineered pathway)";"Pentose phosphate pathway"
JAMg_model_17634.1	5	Reactome: R-HSA-380994;Reactome: R-HSA-381183;Reactome: R-HSA-2426168;Reactome: R-HSA-9614657;Reactome: R-HSA-1989781	"ATF4 activates genes in response to endoplasmic reticulum stress";"ATF6 (ATF6-alpha) activates chaperone genes";"Activation of gene expression by SREBF (SREBP)";"FOXO-mediated transcription of cell death genes";"PPARA activates gene expression"
JAMg_model_19799.1	5	Reactome: R-HSA-1655829;Reactome: R-HSA-2132295;Reactome: R-HSA-204005;Reactome: R-HSA-5694530;Reactome: R-HSA-983170	"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"MHC class II antigen presentation";"COPII-mediated vesicle transport";"Cargo concentration in the ER";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC"
JAMg_model_10201.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_15747.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_10149.1	3	Reactome: R-HSA-5579007;Reactome: R-HSA-5423646;KEGG: 00220+3.5.1.14	"Defective ACY1 causes encephalopathy";"Aflatoxin activation and detoxification";"Arginine biosynthesis"
JAMg_model_20950.1	1	Reactome: R-HSA-6803204	"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release"
JAMg_model_19133.4	13	MetaCyc: PWY-5537;Reactome: R-HSA-71403;KEGG: 00720+6.2.1.5;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-5392;KEGG: 00640+6.2.1.5;KEGG: 00020+6.2.1.5;MetaCyc: PWY-7384;MetaCyc: PWY-6728;MetaCyc: PWY-5538;MetaCyc: PWY-5690;KEGG: 00660+6.2.1.5	"Pyruvate fermentation to acetate V";"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Reductive TCA cycle II";"Propanoate metabolism";"Citrate cycle (TCA cycle)";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Methylaspartate cycle";"Pyruvate fermentation to acetate VI";"TCA cycle II (plants and fungi)";"C5-Branched dibasic acid metabolism"
JAMg_model_13527.1	2	Reactome: R-HSA-8873719;Reactome: R-HSA-6803205	"RAB geranylgeranylation";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain"
JAMg_model_16502.1	1	Reactome: R-HSA-1614517	"Sulfide oxidation to sulfate"
JAMg_model_14082.1	2	MetaCyc: PWY-7285;MetaCyc: PWY-7286	"Methylwyosine biosynthesis";"7-(3-amino-3-carboxypropyl)-wyosine biosynthesis"
JAMg_model_11878.2	6	MetaCyc: PWY-5067;MetaCyc: PWY-622;Reactome: R-HSA-189085;MetaCyc: PWY-7900;KEGG: 00500+2.4.1.18;KEGG: 00500+3.2.1.1	"Glycogen biosynthesis II (from UDP-D-Glucose)";"Starch biosynthesis";"Digestion of dietary carbohydrate";"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)";"Starch and sucrose metabolism";"Starch and sucrose metabolism"
JAMg_model_20988.3	1	Reactome: R-HSA-9633012	"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_164.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_16685.2	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_2271.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_14134.2	1	KEGG: 00480+3.4.11.1	"Glutathione metabolism"
JAMg_model_17091.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_8006.2	10	Reactome: R-HSA-4717374;MetaCyc: PWY-7979;MetaCyc: PWY-7921;Reactome: R-HSA-913709;Reactome: R-HSA-162699;MetaCyc: PWY-7661;Reactome: R-HSA-4719377;MetaCyc: PWY-7922;KEGG: 00510+2.4.1.83;Reactome: R-HSA-4719360	"Defective DPM1 causes DPM1-CDG (CDG-1e)";"Protein O-mannosylation III (mammals, core M3)";"Protein O-mannosylation I (yeast)";"O-linked glycosylation of mucins";"Synthesis of dolichyl-phosphate mannose";"Protein N-glycosylation (Haloferax volcanii)";"Defective DPM2 causes DPM2-CDG (CDG-1u)";"Protein O-mannosylation II (mammals, core M1 and core M2)";"N-Glycan biosynthesis";"Defective DPM3 causes DPM3-CDG (CDG-1o)"
JAMg_model_18080.1	6	Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_18296.2	7	Reactome: R-HSA-70221;MetaCyc: PWY-5941;MetaCyc: PWY-7238;KEGG: 00500+2.4.1.25;MetaCyc: PWY-6724;Reactome: R-HSA-6798695;MetaCyc: PWY-6737	"Glycogen breakdown (glycogenolysis)";"Glycogen degradation II";"Sucrose biosynthesis II";"Starch and sucrose metabolism";"Starch degradation II";"Neutrophil degranulation";"Starch degradation V"
JAMg_model_19495.1	4	MetaCyc: PWY-7250;KEGG: 00730+2.8.1.7;Reactome: R-HSA-1362409;Reactome: R-HSA-947581	"[2Fe-2S] iron-sulfur cluster biosynthesis";"Thiamine metabolism";"Mitochondrial iron-sulfur cluster biogenesis";"Molybdenum cofactor biosynthesis"
JAMg_model_12733.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_12329.2	14	MetaCyc: PWY-6728;KEGG: 00720+1.3.5.1;MetaCyc: PWY-561;MetaCyc: PWY-5690;MetaCyc: PWY-4302;KEGG: 00020+1.3.5.1;MetaCyc: PWY-3781;Reactome: R-HSA-611105;Reactome: R-HSA-71403;MetaCyc: PWY-7279;KEGG: 00190+1.3.5.1;MetaCyc: PWY-7254;KEGG: 00650+1.3.5.1;MetaCyc: PWY-6969	"Methylaspartate cycle";"Carbon fixation pathways in prokaryotes";"Superpathway of glyoxylate cycle and fatty acid degradation";"TCA cycle II (plants and fungi)";"Aerobic respiration III (alternative oxidase pathway)";"Citrate cycle (TCA cycle)";"Aerobic respiration I (cytochrome c)";"Respiratory electron transport";"Citric acid cycle (TCA cycle)";"Aerobic respiration II (cytochrome c) (yeast)";"Oxidative phosphorylation";"TCA cycle VII (acetate-producers)";"Butanoate metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_11914.1	3	Reactome: R-HSA-5620916;Reactome: R-HSA-1445148;Reactome: R-HSA-264876	"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing"
JAMg_model_583.8	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_6598.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_12755.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_18163.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_20068.1	5	Reactome: R-HSA-9610379;Reactome: R-HSA-917729;Reactome: R-HSA-416482;Reactome: R-HSA-194840;Reactome: R-HSA-193648	"HCMV Late Events";"Endosomal Sorting Complex Required For Transport (ESCRT)";"G alpha (12/13) signalling events";"Rho GTPase cycle";"NRAGE signals death through JNK"
JAMg_model_13562.1	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_7510.2	3	MetaCyc: PWY-7426;Reactome: R-HSA-975574;KEGG: 00510+2.4.1.144	"Complex N-linked glycan biosynthesis (vertebrates)";"Reactions specific to the hybrid N-glycan synthesis pathway";"N-Glycan biosynthesis"
JAMg_model_5213.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_20864.2	12	KEGG: 00680+6.2.1.1;KEGG: 00720+6.2.1.1;KEGG: 00620+6.2.1.1;MetaCyc: PWY-7118;MetaCyc: PWY-5108;KEGG: 00640+6.2.1.1;KEGG: 00630+6.2.1.1;KEGG: 00010+6.2.1.1;MetaCyc: PWY-5133;MetaCyc: PWY-7857;MetaCyc: PWY-5132;MetaCyc: PWY-6672	"Methane metabolism";"Carbon fixation pathways in prokaryotes";"Pyruvate metabolism";"Chitin degradation to ethanol";"L-isoleucine biosynthesis V";"Propanoate metabolism";"Glyoxylate and dicarboxylate metabolism";"Glycolysis / Gluconeogenesis";"Colupulone and cohumulone biosynthesis";"Adlupulone and adhumulone biosynthesis";"Lupulone and humulone biosynthesis";"Cis-genanyl-coa degradation"
JAMg_model_3812.1	1	Reactome: R-HSA-2514853	"Condensation of Prometaphase Chromosomes"
JAMg_model_7327.1	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_21085.1	6	Reactome: R-HSA-73856;Reactome: R-HSA-77595;Reactome: R-HSA-159231;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-5693571	"RNA Polymerase II Transcription Termination";"Processing of Intronless Pre-mRNAs";"Transport of Mature mRNA Derived from an Intronless Transcript";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Nonhomologous End-Joining (NHEJ)"
JAMg_model_20576.2	3	Reactome: R-HSA-1445148;Reactome: R-HSA-264876;Reactome: R-HSA-5620916	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing";"VxPx cargo-targeting to cilium"
JAMg_model_4530.1	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_20123.1	8	Reactome: R-HSA-9609690;Reactome: R-HSA-212300;Reactome: R-HSA-4551638;Reactome: R-HSA-3214841;Reactome: R-HSA-2559580;Reactome: R-HSA-8953750;Reactome: R-HSA-5617472;Reactome: R-HSA-8943724	"HCMV Early Events";"PRC2 methylates histones and DNA";"SUMOylation of chromatin organization proteins";"PKMTs methylate histone lysines";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by E2F6";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Regulation of PTEN gene transcription"
JAMg_model_13613.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_6617.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_13722.1	3	MetaCyc: PWY-5067;Reactome: R-HSA-3322077;KEGG: 00500+2.4.1.11	"Glycogen biosynthesis II (from UDP-D-Glucose)";"Glycogen synthesis";"Starch and sucrose metabolism"
JAMg_model_15508.5	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_1711.1	3	Reactome: R-HSA-5655862;Reactome: R-HSA-110312;Reactome: R-HSA-5656121	"Translesion synthesis by POLK";"Translesion synthesis by REV1";"Translesion synthesis by POLI"
JAMg_model_446.4	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_9569.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_18891.2	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_16244.1	3	MetaCyc: PWY-6482;Reactome: R-HSA-5358493;MetaCyc: PWY-7546	"Diphthamide biosynthesis I (archaea)";"Synthesis of diphthamide-EEF2";"Diphthamide biosynthesis II (eukaryotes)"
JAMg_model_10689.5	6	Reactome: R-HSA-429958;Reactome: R-HSA-450604;Reactome: R-HSA-450385;Reactome: R-HSA-380994;Reactome: R-HSA-450513;Reactome: R-HSA-6791226	"mRNA decay by 3' to 5' exoribonuclease";"KSRP (KHSRP) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_17530.2	4	Reactome: R-HSA-5693568;Reactome: R-HSA-5693554;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942	"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)"
JAMg_model_3670.3	1	Reactome: R-HSA-5368286	"Mitochondrial translation initiation"
JAMg_model_12366.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_340.2	1	Reactome: R-HSA-427652	"Sodium-coupled phosphate cotransporters"
JAMg_model_12824.2	6	Reactome: R-HSA-2022090;Reactome: R-HSA-8874081;Reactome: R-HSA-8948216;Reactome: R-HSA-3000171;Reactome: R-HSA-1650814;Reactome: R-HSA-1442490	"Assembly of collagen fibrils and other multimeric structures";"MET activates PTK2 signaling";"Collagen chain trimerization";"Non-integrin membrane-ECM interactions";"Collagen biosynthesis and modifying enzymes";"Collagen degradation"
JAMg_model_13298.2	2	KEGG: 00240+4.2.1.70;MetaCyc: PWY-6019	"Pyrimidine metabolism";"Pseudouridine degradation"
JAMg_model_13215.2	32	Reactome: R-HSA-110314;Reactome: R-HSA-6804756;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-6783310;Reactome: R-HSA-6782135;Reactome: R-HSA-3371511;Reactome: R-HSA-3214847;Reactome: R-HSA-5696395;Reactome: R-HSA-5656169;Reactome: R-HSA-5693607;Reactome: R-HSA-5689880;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-69473;Reactome: R-HSA-5358606;Reactome: R-HSA-201722;Reactome: R-HSA-5696397;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-5655862;Reactome: R-HSA-912446;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-3371453;Reactome: R-HSA-110320;Reactome: R-HSA-5685942;Reactome: R-HSA-69166;Reactome: R-HSA-5693616;Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5358565	"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"Fanconi Anemia Pathway";"Dual incision in TC-NER";"HSF1 activation";"HATs acetylate histones";"Formation of Incision Complex in GG-NER";"Termination of translesion DNA synthesis";"Processing of DNA double-strand break ends";"Ub-specific processing proteases";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"G2/M DNA damage checkpoint";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Formation of the beta-catenin:TCF transactivating complex";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Translesion synthesis by POLK";"Meiotic recombination";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Regulation of HSF1-mediated heat shock response";"Translesion Synthesis by POLH";"HDR through Homologous Recombination (HRR)";"Removal of the Flap Intermediate";"Presynaptic phase of homologous DNA pairing and strand exchange";"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)"
JAMg_model_298.1	1	Reactome: R-HSA-419771	"Opsins"
JAMg_model_8210.7	6	Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-72695	"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex"
JAMg_model_8560.3	24	Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-983189;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148	"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Kinesins";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_6375.3	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_19081.6	2	KEGG: 00230+2.7.6.1;KEGG: 00030+2.7.6.1	"Purine metabolism";"Pentose phosphate pathway"
JAMg_model_19548.1	1	Reactome: R-HSA-428359	"Insulin-like Growth Factor-2 mRNA Binding Proteins (IGF2BPs/IMPs/VICKZs) bind RNA"
JAMg_model_13641.1	2	Reactome: R-HSA-977225;Reactome: R-HSA-8854214	"Amyloid fiber formation";"TBC/RABGAPs"
JAMg_model_19930.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_19491.5	4	Reactome: R-HSA-1362409;Reactome: R-HSA-947581;MetaCyc: PWY-7250;KEGG: 00730+2.8.1.7	"Mitochondrial iron-sulfur cluster biogenesis";"Molybdenum cofactor biosynthesis";"[2Fe-2S] iron-sulfur cluster biosynthesis";"Thiamine metabolism"
JAMg_model_10213.3	8	Reactome: R-HSA-71336;KEGG: 00030+2.2.1.2;Reactome: R-HSA-8950505;MetaCyc: PWY-5723;Reactome: R-HSA-163754;Reactome: R-HSA-6791462;Reactome: R-HSA-6791055;MetaCyc: PWY-1861	"Pentose phosphate pathway";"Pentose phosphate pathway";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Rubisco shunt";"Insulin effects increased synthesis of Xylulose-5-Phosphate";"TALDO1 deficiency: failed conversion of Fru(6)P, E4P to SH7P, GA3P";"TALDO1 deficiency: failed conversion of SH7P, GA3P to Fru(6)P, E4P";"Formaldehyde assimilation II (assimilatory RuMP Cycle)"
JAMg_model_4688.1	8	MetaCyc: PWY-7184;MetaCyc: PWY-7197;KEGG: 00240+2.7.4.9;MetaCyc: PWY-7187;MetaCyc: PWY-7198;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7210	"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides biosynthesis from CTP"
JAMg_model_12907.1	1	Reactome: R-HSA-9018519	"Estrogen-dependent gene expression"
JAMg_model_20787.8	32	Reactome: R-HSA-75955;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-9018519;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-72203;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-73776;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-77075;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-167238;Reactome: R-HSA-72086;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-167160;Reactome: R-HSA-72163;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167287;Reactome: R-HSA-112382	"RNA Polymerase II Transcription Elongation";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Estrogen-dependent gene expression";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Processing of Capped Intron-Containing Pre-mRNA";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Promoter Escape";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Pol II CTD phosphorylation and interaction with CE";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Capping";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"mRNA Splicing - Major Pathway";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex"
JAMg_model_6854.1	13	MetaCyc: PWY-5497;MetaCyc: PWY-2201;KEGG: 00720+1.5.1.5+3.5.4.9;KEGG: 00670+1.5.1.5+3.5.4.9;KEGG: 00720+6.3.4.3;MetaCyc: PWY-2161;MetaCyc: PWY-1722;MetaCyc: PWY-5030;Reactome: R-HSA-196757;KEGG: 00670+6.3.4.3;MetaCyc: PWY-3841;MetaCyc: PWY-6613;MetaCyc: PWY-7909	"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"Carbon fixation pathways in prokaryotes";"One carbon pool by folate";"Carbon fixation pathways in prokaryotes";"Folate polyglutamylation";"Formate assimilation into 5,10-methylenetetrahydrofolate";"L-histidine degradation III";"Metabolism of folate and pterines";"One carbon pool by folate";"Folate transformations II (plants)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Formaldehyde oxidation VII (THF pathway)"
JAMg_model_17563.1	1	Reactome: R-HSA-6811438	"Intra-Golgi traffic"
JAMg_model_12479.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_9788.1	3	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-749476	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_13764.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_12910.1	6	MetaCyc: PWY-2221;MetaCyc: PWY-7165;KEGG: 00030+3.1.1.17;KEGG: 00930+3.1.1.17;KEGG: 00053+3.1.1.17;MetaCyc: PWY-5530	"Entner-Doudoroff pathway III (semi-phosphorylative)";"L-ascorbate biosynthesis VI (engineered pathway)";"Pentose phosphate pathway";"Caprolactam degradation";"Ascorbate and aldarate metabolism";"Sorbitol biosynthesis II"
JAMg_model_4492.1	9	Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-674695;Reactome: R-HSA-6807505;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-76042	"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Pre-transcription Events";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance"
JAMg_model_11739.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_13441.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_19053.2	7	KEGG: 00940+1.11.1.7;MetaCyc: PWY-7445;MetaCyc: PWY-7214;MetaCyc: PWY-5461;MetaCyc: PWY-5466;MetaCyc: PWY-6824;MetaCyc: PWY-5469	"Phenylpropanoid biosynthesis";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Betanidin degradation";"Matairesinol biosynthesis";"Justicidin B biosynthesis";"Sesamin biosynthesis"
JAMg_model_15441.4	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_15097.2	8	Reactome: R-HSA-167590;Reactome: R-HSA-9636467;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-182218;Reactome: R-HSA-9639288;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"Nef Mediated CD4 Down-regulation";"Blockage of phagosome acidification";"ROS and RNS production in phagocytes";"Ion channel transport";"Nef Mediated CD8 Down-regulation";"Amino acids regulate mTORC1";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_1151.6	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_786.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_17238.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_12508.2	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_6423.3	7	KEGG: 00680+3.1.3.11;KEGG: 00010+3.1.3.11;MetaCyc: PWY-5484;KEGG: 00051+3.1.3.11;Reactome: R-HSA-70263;KEGG: 00710+3.1.3.11;KEGG: 00030+3.1.3.11	"Methane metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Fructose and mannose metabolism";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Pentose phosphate pathway"
JAMg_model_7739.2	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_11379.1	3	Reactome: R-HSA-450604;Reactome: R-HSA-380994;Reactome: R-HSA-429947	"KSRP (KHSRP) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Deadenylation of mRNA"
JAMg_model_7420.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_15228.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_7576.2	2	Reactome: R-HSA-189085;KEGG: 00500+3.2.1.28	"Digestion of dietary carbohydrate";"Starch and sucrose metabolism"
JAMg_model_12498.2	3	Reactome: R-HSA-2022854;Reactome: R-HSA-5173105;Reactome: R-HSA-5083627	"Keratan sulfate biosynthesis";"O-linked glycosylation";"Defective LARGE causes MDDGA6 and MDDGB6"
JAMg_model_15493.3	20	MetaCyc: PWY-7007;MetaCyc: PWY-7606;MetaCyc: PWY-7726;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7291;MetaCyc: PWY-735;MetaCyc: PWY-7854;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7858;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7338;MetaCyc: PWY-7288;MetaCyc: PWY-7574;MetaCyc: PWY-7337;KEGG: 00410+1.3.3.6;MetaCyc: PWY-6837;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-5136;Reactome: R-HSA-9033241	"Methyl ketone biosynthesis (engineered)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Propanoate metabolism";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Jasmonic acid biosynthesis";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Fatty acid degradation";"(5Z)-dodecenoate biosynthesis II";"alpha-Linolenic acid metabolism";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"beta-Alanine metabolism";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Fatty acid beta-oxidation II (plant peroxisome)";"Peroxisomal protein import"
JAMg_model_15268.5	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_796.1	2	Reactome: R-HSA-5693568;Reactome: R-HSA-6783310	"Resolution of D-loop Structures through Holliday Junction Intermediates";"Fanconi Anemia Pathway"
JAMg_model_17962.1	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_3401.1	3	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-749476	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_21022.3	13	Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_15277.8	10	KEGG: 00670+1.5.1.5+3.5.4.9;KEGG: 00720+1.5.1.5+3.5.4.9;MetaCyc: PWY-5497;MetaCyc: PWY-2201;MetaCyc: PWY-1722;Reactome: R-HSA-196757;MetaCyc: PWY-5030;MetaCyc: PWY-6613;MetaCyc: PWY-7909;MetaCyc: PWY-3841	"One carbon pool by folate";"Carbon fixation pathways in prokaryotes";"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"Formate assimilation into 5,10-methylenetetrahydrofolate";"Metabolism of folate and pterines";"L-histidine degradation III";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Formaldehyde oxidation VII (THF pathway)";"Folate transformations II (plants)"
JAMg_model_7407.1	1	Reactome: R-HSA-8963901	"Chylomicron remodeling"
JAMg_model_3756.1	5	Reactome: R-HSA-1483148;KEGG: 00564+2.7.8.5;MetaCyc: PWY-5269;MetaCyc: PWY-5668;MetaCyc: PWY-7817	"Synthesis of PG";"Glycerophospholipid metabolism";"Cardiolipin biosynthesis II";"Cardiolipin biosynthesis I";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_16816.2	1	Reactome: R-HSA-70895	"Branched-chain amino acid catabolism"
JAMg_model_14507.1	1	Reactome: R-HSA-2173788	"Downregulation of TGF-beta receptor signaling"
JAMg_model_15712.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_10572.1	4	Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-6781823	"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_5574.5	2	Reactome: R-HSA-4641265;Reactome: R-HSA-5339700	"Repression of WNT target genes";"TCF7L2 mutants don't bind CTBP"
JAMg_model_20974.1	6	Reactome: R-HSA-913709;MetaCyc: PWY-7433;KEGG: 00514+2.4.1.122;KEGG: 00512+2.4.1.122;MetaCyc: PWY-7290;Reactome: R-HSA-5083632	"O-linked glycosylation of mucins";"Mucin core 1 and core 2 O-glycosylation";"Other types of O-glycan biosynthesis";"Mucin type O-glycan biosynthesis";"Escherichia coli serotype O86 O-antigen biosynthesis";"Defective C1GALT1C1 causes Tn polyagglutination syndrome (TNPS)"
JAMg_model_8298.6	4	Reactome: R-HSA-1912420;Reactome: R-HSA-936837;Reactome: R-HSA-418359;Reactome: R-HSA-5578775	"Pre-NOTCH Processing in Golgi";"Ion transport by P-type ATPases";"Reduction of cytosolic Ca++ levels";"Ion homeostasis"
JAMg_model_2702.1	2	KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788	"Starch and sucrose metabolism";"Cellulose degradation II (fungi)"
JAMg_model_7883.3	1	Reactome: R-HSA-2565942	"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_16083.3	3	Reactome: R-HSA-2514859;MetaCyc: PWY-7800;MetaCyc: PWY-7799	"Inactivation, recovery and regulation of the phototransduction cascade";"Ac/N-end rule pathway";"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_20674.1	56	Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783	"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome"
JAMg_model_18689.1	6	MetaCyc: PWY-7900;KEGG: 00500+2.4.1.18;KEGG: 00500+3.2.1.1;Reactome: R-HSA-189085;MetaCyc: PWY-5067;MetaCyc: PWY-622	"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)";"Starch and sucrose metabolism";"Starch and sucrose metabolism";"Digestion of dietary carbohydrate";"Glycogen biosynthesis II (from UDP-D-Glucose)";"Starch biosynthesis"
JAMg_model_9899.1	13	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_1774.1	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_15627.1	4	Reactome: R-HSA-2408557;MetaCyc: PWY-6281;KEGG: 00970+2.9.1.2;KEGG: 00450+2.9.1.2	"Selenocysteine synthesis";"L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Aminoacyl-tRNA biosynthesis";"Selenocompound metabolism"
JAMg_model_14959.2	6	Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-6798695;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712	"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Neutrophil degranulation";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport"
JAMg_model_8587.1	1	Reactome: R-HSA-380972	"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_8481.1	2	Reactome: R-HSA-203927;Reactome: R-HSA-8986944	"MicroRNA (miRNA) biogenesis";"Transcriptional Regulation by MECP2"
JAMg_model_1359.2	12	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;Reactome: R-HSA-194840;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"G alpha (q) signalling events";"NRAGE signals death through JNK";"Rho GTPase cycle";"Thermogenesis";"Human papillomavirus infection";"Human cytomegalovirus infection";"DCC mediated attractive signaling";"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events"
JAMg_model_9564.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_10134.4	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_5977.2	3	Reactome: R-HSA-204005;Reactome: R-HSA-5694530;Reactome: R-HSA-948021	"COPII-mediated vesicle transport";"Cargo concentration in the ER";"Transport to the Golgi and subsequent modification"
JAMg_model_9141.2	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_16059.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-390471	"Major pathway of rRNA processing in the nucleolus and cytosol";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_11230.1	5	Reactome: R-HSA-111464;Reactome: R-HSA-111457;Reactome: R-HSA-111469;Reactome: R-HSA-9627069;Reactome: R-HSA-111463	"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"Release of apoptotic factors from the mitochondria";"SMAC, XIAP-regulated apoptotic response";"Regulation of the apoptosome activity";"SMAC (DIABLO) binds to IAPs"
JAMg_model_16528.3	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_16053.1	5	MetaCyc: PWY-7790;MetaCyc: PWY-7791;Reactome: R-HSA-500753;MetaCyc: PWY-5686;KEGG: 00240+4.1.1.23	"UMP biosynthesis II";"UMP biosynthesis III";"Pyrimidine biosynthesis";"UMP biosynthesis I";"Pyrimidine metabolism"
JAMg_model_10034.1	5	Reactome: R-HSA-9033500;Reactome: R-HSA-9033241;MetaCyc: PWY-7782;KEGG: 00565+2.5.1.26;Reactome: R-HSA-75896	"TYSND1 cleaves peroxisomal proteins";"Peroxisomal protein import";"Plasmalogen biosynthesis";"Ether lipid metabolism";"Plasmalogen biosynthesis"
JAMg_model_6771.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_2077.2	33	Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-68877;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-159236;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-170822;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-4551638;Reactome: R-HSA-159227;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168276	"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"Mitotic Prometaphase";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"SUMOylation of chromatin organization proteins";"Transport of the SLBP independent Mature mRNA";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"NS1 Mediated Effects on Host Pathways"
JAMg_model_16346.1	1	Reactome: R-HSA-112308	"Presynaptic depolarization and calcium channel opening"
JAMg_model_5075.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_8702.5	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_16845.2	3	Reactome: R-HSA-416482;Reactome: R-HSA-194840;Reactome: R-HSA-193648	"G alpha (12/13) signalling events";"Rho GTPase cycle";"NRAGE signals death through JNK"
JAMg_model_14273.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_8758.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_18325.1	2	Reactome: R-HSA-445355;Reactome: R-HSA-390522	"Smooth Muscle Contraction";"Striated Muscle Contraction"
JAMg_model_2714.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_4976.2	7	MetaCyc: PWY-7445;MetaCyc: PWY-7214;MetaCyc: PWY-5461;KEGG: 00940+1.11.1.7;MetaCyc: PWY-6824;MetaCyc: PWY-5469;MetaCyc: PWY-5466	"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Betanidin degradation";"Phenylpropanoid biosynthesis";"Justicidin B biosynthesis";"Sesamin biosynthesis";"Matairesinol biosynthesis"
JAMg_model_7587.4	2	Reactome: R-HSA-8951671;Reactome: R-HSA-2032785	"RUNX3 regulates YAP1-mediated transcription";"YAP1- and WWTR1 (TAZ)-stimulated gene expression"
JAMg_model_10741.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_18171.1	2	Reactome: R-HSA-8963888;Reactome: R-HSA-8866423	"Chylomicron assembly";"VLDL assembly"
JAMg_model_12710.4	6	MetaCyc: PWY-6898;Reactome: R-HSA-196819;MetaCyc: PWY-6907;MetaCyc: PWY-7356;KEGG: 00730+2.7.6.2;MetaCyc: PWY-6908	"Thiamine salvage III";"Vitamin B1 (thiamin) metabolism";"Thiamine diphosphate biosynthesis III (Staphylococcus)";"Thiamine salvage IV (yeast)";"Thiamine metabolism";"Thiamine diphosphate biosynthesis IV (eukaryotes)"
JAMg_model_21110.1	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_8112.1	2	KEGG: 00450+6.1.1.10;KEGG: 00970+6.1.1.10	"Selenocompound metabolism";"Aminoacyl-tRNA biosynthesis"
JAMg_model_11681.1	9	Reactome: R-HSA-156590;MetaCyc: PWY-6842;MetaCyc: PWY-7112;KEGG: 00983+2.5.1.18;MetaCyc: PWY-7533;MetaCyc: PWY-4061;KEGG: 00480+2.5.1.18;KEGG: 00982+2.5.1.18;KEGG: 00980+2.5.1.18	"Glutathione conjugation";"Glutathione-mediated detoxification II";"4-hydroxy-2-nonenal detoxification";"Drug metabolism - other enzymes";"Gliotoxin biosynthesis";"Glutathione-mediated detoxification I";"Glutathione metabolism";"Drug metabolism - cytochrome P450";"Metabolism of xenobiotics by cytochrome P450"
JAMg_model_15049.1	5	Reactome: R-HSA-1655829;Reactome: R-HSA-2132295;Reactome: R-HSA-204005;Reactome: R-HSA-5694530;Reactome: R-HSA-983170	"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"MHC class II antigen presentation";"COPII-mediated vesicle transport";"Cargo concentration in the ER";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC"
JAMg_model_1413.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_447.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_5303.1	4	MetaCyc: PWY-6129;KEGG: 00510+2.7.1.108;Reactome: R-HSA-446199;Reactome: R-HSA-4755583	"Dolichol and dolichyl phosphate biosynthesis";"N-Glycan biosynthesis";"Synthesis of Dolichyl-phosphate";"Defective DOLK causes DOLK-CDG (CDG-1m)"
JAMg_model_7357.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11504.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_3162.2	6	Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72689;Reactome: R-HSA-72649	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Formation of a pool of free 40S subunits";"Translation initiation complex formation"
JAMg_model_5587.9	2	Reactome: R-HSA-445095;Reactome: R-HSA-6807878	"Interaction between L1 and Ankyrins";"COPI-mediated anterograde transport"
JAMg_model_9724.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_7968.1	1	Reactome: R-HSA-5576886	"Phase 4 - resting membrane potential"
JAMg_model_10797.5	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_5850.1	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_7092.4	5	KEGG: 00330+1.5.1.2;MetaCyc: PWY-4981;MetaCyc: PWY-3341;MetaCyc: PWY-6344;Reactome: R-HSA-8964539	"Arginine and proline metabolism";"L-proline biosynthesis II (from arginine)";"L-proline biosynthesis III (from L-ornithine)";"L-ornithine degradation II (Stickland reaction)";"Glutamate and glutamine metabolism"
JAMg_model_6468.1	2	Reactome: R-HSA-379716;KEGG: 00970+6.1.1.20	"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_13773.2	7	Reactome: R-HSA-73762;Reactome: R-HSA-8943724;Reactome: R-HSA-3214815;Reactome: R-HSA-427389;Reactome: R-HSA-6804758;Reactome: R-HSA-9610379;Reactome: R-HSA-917729	"RNA Polymerase I Transcription Initiation";"Regulation of PTEN gene transcription";"HDACs deacetylate histones";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"Regulation of TP53 Activity through Acetylation";"HCMV Late Events";"Endosomal Sorting Complex Required For Transport (ESCRT)"
JAMg_model_2928.6	7	KEGG: 05163+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1	"Human cytomegalovirus infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection"
JAMg_model_2245.1	2	Reactome: R-HSA-446199;Reactome: R-HSA-4755609	"Synthesis of Dolichyl-phosphate";"Defective DHDDS causes retinitis pigmentosa 59"
JAMg_model_10657.1	2	Reactome: R-HSA-72165;Reactome: R-HSA-72163	"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway"
JAMg_model_9851.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_5950.1	2	Reactome: R-HSA-162791;Reactome: R-HSA-425561	"Attachment of GPI anchor to uPAR";"Sodium/Calcium exchangers"
JAMg_model_12111.3	2	Reactome: R-HSA-1483115;Reactome: R-HSA-1483152	"Hydrolysis of LPC";"Hydrolysis of LPE"
JAMg_model_8220.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_19133.2	13	MetaCyc: PWY-7384;MetaCyc: PWY-6728;MetaCyc: PWY-5538;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5537;Reactome: R-HSA-71403;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5	"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Methylaspartate cycle";"Pyruvate fermentation to acetate VI";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate V";"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Reductive TCA cycle II";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Citrate cycle (TCA cycle)";"Propanoate metabolism"
JAMg_model_17038.2	2	Reactome: R-HSA-196783;KEGG: 00770+6.3.2.5	"Coenzyme A biosynthesis";"Pantothenate and CoA biosynthesis"
JAMg_model_1288.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_8134.1	4	MetaCyc: PWY-5189;KEGG: 00860+4.2.1.75;Reactome: R-HSA-189451;MetaCyc: PWY-5188	"Tetrapyrrole biosynthesis II (from glycine)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis";"Tetrapyrrole biosynthesis I (from glutamate)"
JAMg_model_8298.4	4	Reactome: R-HSA-1912420;Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359	"Pre-NOTCH Processing in Golgi";"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels"
JAMg_model_477.1	11	Reactome: R-HSA-418555;Reactome: R-HSA-164378;KEGG: 00230+4.6.1.1;Reactome: R-HSA-170660;Reactome: R-HSA-432040;Reactome: R-HSA-418594;Reactome: R-HSA-163359;Reactome: R-HSA-418597;Reactome: R-HSA-170670;Reactome: R-HSA-163615;Reactome: R-HSA-5610787	"G alpha (s) signalling events";"PKA activation in glucagon signalling";"Purine metabolism";"Adenylate cyclase activating pathway";"Vasopressin regulates renal water homeostasis via Aquaporins";"G alpha (i) signalling events";"Glucagon signaling in metabolic regulation";"G alpha (z) signalling events";"Adenylate cyclase inhibitory pathway";"PKA activation";"Hedgehog 'off' state"
JAMg_model_10628.1	1	Reactome: R-HSA-5689901	"Metalloprotease DUBs"
JAMg_model_574.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_19117.1	1	Reactome: R-HSA-200425	"Carnitine metabolism"
JAMg_model_13521.4	8	Reactome: R-HSA-442720;Reactome: R-HSA-983231;Reactome: R-HSA-164378;Reactome: R-HSA-381676;Reactome: R-HSA-432040;Reactome: R-HSA-163615;Reactome: R-HSA-180024;Reactome: R-HSA-5610787	"CREB1 phosphorylation through the activation of Adenylate Cyclase";"Factors involved in megakaryocyte development and platelet production";"PKA activation in glucagon signalling";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Vasopressin regulates renal water homeostasis via Aquaporins";"PKA activation";"DARPP-32 events";"Hedgehog 'off' state"
JAMg_model_21022.4	13	Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_480.4	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_15311.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_559.1	16	Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_17282.1	1	Reactome: R-HSA-2022928	"HS-GAG biosynthesis"
JAMg_model_12837.1	1	Reactome: R-HSA-203754	"NOSIP mediated eNOS trafficking"
JAMg_model_11907.2	1	Reactome: R-HSA-2151201	"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_2446.2	5	Reactome: R-HSA-73762;Reactome: R-HSA-8943724;Reactome: R-HSA-6804758;Reactome: R-HSA-427389;Reactome: R-HSA-3214815	"RNA Polymerase I Transcription Initiation";"Regulation of PTEN gene transcription";"Regulation of TP53 Activity through Acetylation";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"HDACs deacetylate histones"
JAMg_model_19163.1	3	Reactome: R-HSA-159740;MetaCyc: PWY-7999;KEGG: 00130+4.1.1.90	"Gamma-carboxylation of protein precursors";"Vitamin K-epoxide cycle";"Ubiquinone and other terpenoid-quinone biosynthesis"
JAMg_model_8370.1	2	Reactome: R-HSA-2029482;Reactome: R-HSA-5663213	"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs"
JAMg_model_12679.1	5	Reactome: R-HSA-72163;Reactome: R-HSA-6781823;Reactome: R-HSA-6782210;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135	"mRNA Splicing - Major Pathway";"Formation of TC-NER Pre-Incision Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER"
JAMg_model_21196.2	1	Reactome: R-HSA-68962	"Activation of the pre-replicative complex"
JAMg_model_6938.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_1293.1	6	KEGG: 00010+5.4.2.11;KEGG: 00260+5.4.2.11;KEGG: 00680+5.4.2.11;MetaCyc: PWY-5484;MetaCyc: PWY-1622;MetaCyc: PWY-8004	"Glycolysis / Gluconeogenesis";"Glycine, serine and threonine metabolism";"Methane metabolism";"Glycolysis II (from fructose 6-phosphate)";"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I"
JAMg_model_15067.1	2	KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788	"Starch and sucrose metabolism";"Cellulose degradation II (fungi)"
JAMg_model_1686.1	7	Reactome: R-HSA-6798695;Reactome: R-HSA-390471;Reactome: R-HSA-389957;Reactome: R-HSA-389960;Reactome: R-HSA-5620922;Reactome: R-HSA-6814122;Reactome: R-HSA-390450	"Neutrophil degranulation";"Association of TriC/CCT with target proteins during biosynthesis";"Prefoldin mediated transfer of substrate to CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Folding of actin by CCT/TriC"
JAMg_model_2272.2	3	Reactome: R-HSA-749476;Reactome: R-HSA-76071;Reactome: R-HSA-6807505	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA polymerase II transcribes snRNA genes"
JAMg_model_11280.1	1	Reactome: R-HSA-211945	"Phase I - Functionalization of compounds"
JAMg_model_19315.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_2365.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_6459.1	2	Reactome: R-HSA-3214841;Reactome: R-HSA-8936459	"PKMTs methylate histone lysines";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function"
JAMg_model_2280.6	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_5503.1	2	Reactome: R-HSA-9020702;Reactome: R-HSA-6798695	"Interleukin-1 signaling";"Neutrophil degranulation"
JAMg_model_1970.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_3486.1	2	Reactome: R-HSA-2151201;Reactome: R-HSA-400253	"Transcriptional activation of mitochondrial biogenesis";"Circadian Clock"
JAMg_model_21160.1	4	MetaCyc: PWY-7282;KEGG: 00750+1.4.3.5;MetaCyc: PWY-7204;Reactome: R-HSA-964975	"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"Vitamin B6 metabolism";"Pyridoxal 5'-phosphate salvage II (plants)";"Vitamins B6 activation to pyridoxal phosphate"
JAMg_model_20334.4	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_10288.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_19620.1	7	MetaCyc: PWY-7294;KEGG: 00620+2.3.3.9;MetaCyc: PWY-7295;MetaCyc: PWY-7118;MetaCyc: PWY-7854;KEGG: 00630+2.3.3.9;MetaCyc: PWY-6969	"D-xylose degradation IV";"Pyruvate metabolism";"L-arabinose degradation IV";"Chitin degradation to ethanol";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Glyoxylate and dicarboxylate metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_3662.1	16	Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827	"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Peptide chain elongation";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_17337.3	1	Reactome: R-HSA-6811438	"Intra-Golgi traffic"
JAMg_model_10628.2	1	Reactome: R-HSA-5689901	"Metalloprotease DUBs"
JAMg_model_2674.1	3	Reactome: R-HSA-75109;MetaCyc: PWY-4261;KEGG: 00561+2.7.1.30	"Triglyceride biosynthesis";"Glycerol degradation I";"Glycerolipid metabolism"
JAMg_model_8676.2	2	Reactome: R-HSA-70895;KEGG: 00280+1.3.8.4	"Branched-chain amino acid catabolism";"Valine, leucine and isoleucine degradation"
JAMg_model_12281.6	2	Reactome: R-HSA-983231;Reactome: R-HSA-5205685	"Factors involved in megakaryocyte development and platelet production";"Pink/Parkin Mediated Mitophagy"
JAMg_model_3930.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_3670.2	1	Reactome: R-HSA-5368286	"Mitochondrial translation initiation"
JAMg_model_8393.2	2	Reactome: R-HSA-2408508;Reactome: R-HSA-389661	"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Glyoxylate metabolism and glycine degradation"
JAMg_model_7256.1	3	Reactome: R-HSA-5620916;Reactome: R-HSA-1445148;Reactome: R-HSA-264876	"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing"
JAMg_model_18325.5	2	Reactome: R-HSA-390522;Reactome: R-HSA-445355	"Striated Muscle Contraction";"Smooth Muscle Contraction"
JAMg_model_8807.2	7	KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1	"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection"
JAMg_model_16984.1	14	Reactome: R-HSA-5696397;Reactome: R-HSA-69091;Reactome: R-HSA-6782135;Reactome: R-HSA-5655862;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-6782210;Reactome: R-HSA-5685942;Reactome: R-HSA-174411;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-110320;Reactome: R-HSA-110314;Reactome: R-HSA-5656169	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Polymerase switching";"Dual incision in TC-NER";"Translesion synthesis by POLK";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"HDR through Homologous Recombination (HRR)";"Polymerase switching on the C-strand of the telomere";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"Translesion Synthesis by POLH";"Recognition of DNA damage by PCNA-containing replication complex";"Termination of translesion DNA synthesis"
JAMg_model_5554.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_12759.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_8077.3	5	Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-912446;Reactome: R-HSA-5693568;Reactome: R-HSA-5693554	"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Meiotic recombination";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_6562.2	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_20791.1	14	Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167246;Reactome: R-HSA-75955;Reactome: R-HSA-674695;Reactome: R-HSA-167287;Reactome: R-HSA-167242;Reactome: R-HSA-167152;Reactome: R-HSA-112382;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-167238;Reactome: R-HSA-167243;Reactome: R-HSA-167290	"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events";"HIV elongation arrest and recovery";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of HIV elongation complex in the absence of HIV Tat";"Formation of RNA Pol II elongation complex";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of Tat-mediated HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation"
JAMg_model_19885.3	2	Reactome: R-HSA-1799339;Reactome: R-HSA-1236974	"SRP-dependent cotranslational protein targeting to membrane";"ER-Phagosome pathway"
JAMg_model_5690.3	2	Reactome: R-HSA-606279;Reactome: R-HSA-6783310	"Deposition of new CENPA-containing nucleosomes at the centromere";"Fanconi Anemia Pathway"
JAMg_model_12129.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_6219.1	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_21038.1	4	MetaCyc: PWY-7285;MetaCyc: PWY-7286;MetaCyc: PWY-6829;Reactome: R-HSA-6782861	"Methylwyosine biosynthesis";"7-(3-amino-3-carboxypropyl)-wyosine biosynthesis";"Trna methylation (yeast)";"Synthesis of wybutosine at G37 of tRNA(Phe)"
JAMg_model_18440.7	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_15530.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_8885.5	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_18181.2	13	Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553	"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs"
JAMg_model_1491.1	4	Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_16589.8	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_2309.1	3	Reactome: R-HSA-3108214;Reactome: R-HSA-5696394;Reactome: R-HSA-5696395	"SUMOylation of DNA damage response and repair proteins";"DNA Damage Recognition in GG-NER";"Formation of Incision Complex in GG-NER"
JAMg_model_5845.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_2273.2	2	KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981	"Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis"
JAMg_model_8051.1	1	Reactome: R-HSA-71064	"Lysine catabolism"
JAMg_model_19133.6	13	MetaCyc: PWY-6728;MetaCyc: PWY-7384;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5538;KEGG: 00720+6.2.1.5;Reactome: R-HSA-71403;MetaCyc: PWY-5537;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-6969;MetaCyc: PWY-5913	"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate VI";"Carbon fixation pathways in prokaryotes";"Citric acid cycle (TCA cycle)";"Pyruvate fermentation to acetate V";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Reductive TCA cycle II";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)"
JAMg_model_340.1	1	Reactome: R-HSA-427652	"Sodium-coupled phosphate cotransporters"
JAMg_model_21023.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19491.6	4	MetaCyc: PWY-7250;KEGG: 00730+2.8.1.7;Reactome: R-HSA-1362409;Reactome: R-HSA-947581	"[2Fe-2S] iron-sulfur cluster biosynthesis";"Thiamine metabolism";"Mitochondrial iron-sulfur cluster biogenesis";"Molybdenum cofactor biosynthesis"
JAMg_model_907.2	8	Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-3928665;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-196025	"Gap junction degradation";"Lysosome Vesicle Biogenesis";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"EPH-ephrin mediated repulsion of cells";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"Formation of annular gap junctions"
JAMg_model_2848.2	12	KEGG: 00640+6.2.1.5;KEGG: 00020+6.2.1.5;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-5392;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5537;MetaCyc: PWY-5690;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5538;MetaCyc: PWY-6728;MetaCyc: PWY-7384	"Propanoate metabolism";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Reductive TCA cycle II";"Carbon fixation pathways in prokaryotes";"Pyruvate fermentation to acetate V";"TCA cycle II (plants and fungi)";"C5-Branched dibasic acid metabolism";"Pyruvate fermentation to acetate VI";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)"
JAMg_model_155.2	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_1679.2	22	Reactome: R-HSA-5467348;Reactome: R-HSA-68877;Reactome: R-HSA-5358752;Reactome: R-HSA-5467337;Reactome: R-HSA-5358749;Reactome: R-HSA-5675221;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-5358751;Reactome: R-HSA-4641262;Reactome: R-HSA-2467813;Reactome: R-HSA-5358747;Reactome: R-HSA-432142;Reactome: R-HSA-5339716;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-6811558;Reactome: R-HSA-195253;Reactome: R-HSA-196299;Reactome: R-HSA-5673000;Reactome: R-HSA-5467340;Reactome: R-HSA-389513	"Truncations of AMER1 destabilize the destruction complex";"Mitotic Prometaphase";"T41 mutants of beta-catenin aren't phosphorylated";"APC truncation mutants have impaired AXIN binding";"S37 mutants of beta-catenin aren't phosphorylated";"Negative regulation of MAPK pathway";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"S45 mutants of beta-catenin aren't phosphorylated";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"Separation of Sister Chromatids";"S33 mutants of beta-catenin aren't phosphorylated";"Platelet sensitization by LDL";"Misspliced GSK3beta mutants stabilize beta-catenin";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Degradation of beta-catenin by the destruction complex";"Beta-catenin phosphorylation cascade";"RAF activation";"AXIN missense mutants destabilize the destruction complex";"CTLA4 inhibitory signaling"
JAMg_model_17752.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_1469.1	7	KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-7214;MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824	"Phenylpropanoid biosynthesis";"Betanidin degradation";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis"
JAMg_model_16635.1	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_16058.1	11	Reactome: R-HSA-193692;Reactome: R-HSA-1251985;Reactome: R-HSA-205043;Reactome: R-HSA-9017802;Reactome: R-HSA-2644606;Reactome: R-HSA-2122948;Reactome: R-HSA-9013700;Reactome: R-HSA-2894862;Reactome: R-HSA-9013507;Reactome: R-HSA-3928665;Reactome: R-HSA-2979096	"Regulated proteolysis of p75NTR";"Nuclear signaling by ERBB4";"NRIF signals cell death from the nucleus";"Noncanonical activation of NOTCH3";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH4 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"EPH-ephrin mediated repulsion of cells";"NOTCH2 Activation and Transmission of Signal to the Nucleus"
JAMg_model_3158.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_17397.1	5	KEGG: 00281+4.1.3.4;MetaCyc: PWY-5074;KEGG: 00072+4.1.3.4;KEGG: 00280+4.1.3.4;KEGG: 00650+4.1.3.4	"Geraniol degradation";"Mevalonate degradation";"Synthesis and degradation of ketone bodies";"Valine, leucine and isoleucine degradation";"Butanoate metabolism"
JAMg_model_7415.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_6740.1	5	MetaCyc: PWY-7180;Reactome: R-HSA-6798695;KEGG: 00030+4.1.2.4;Reactome: R-HSA-71336;MetaCyc: PWY-8060	"2-deoxy-alpha-D-ribose 1-phosphate degradation";"Neutrophil degranulation";"Pentose phosphate pathway";"Pentose phosphate pathway";"2-deoxy-D-ribose degradation I"
JAMg_model_19704.1	2	Reactome: R-HSA-2022928;MetaCyc: PWY-6558	"HS-GAG biosynthesis";"Heparan sulfate biosynthesis (late stages)"
JAMg_model_17345.1	27	Reactome: R-HSA-4085377;Reactome: R-HSA-4551638;Reactome: R-HSA-159236;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168271;Reactome: R-HSA-159227;Reactome: R-HSA-6784531;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-1169408;Reactome: R-HSA-168333;Reactome: R-HSA-5619107;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142	"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of the SLBP independent Mature mRNA";"tRNA processing in the nucleus";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"ISG15 antiviral mechanism";"NEP/NS2 Interacts with the Cellular Export Machinery";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins"
JAMg_model_15484.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_14549.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15480.2	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_21183.1	6	MetaCyc: PWY-7346;KEGG: 00053+1.1.1.22;Reactome: R-HSA-173599;MetaCyc: PWY-7820;KEGG: 00040+1.1.1.22;KEGG: 00520+1.1.1.22	"UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)";"Ascorbate and aldarate metabolism";"Formation of the active cofactor, UDP-glucuronate";"Teichuronic acid biosynthesis (B. subtilis 168)";"Pentose and glucuronate interconversions";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_5088.6	16	MetaCyc: PWY-6142;KEGG: 00010+4.2.1.11;MetaCyc: PWY-7124;MetaCyc: PWY-7218;MetaCyc: PWY-1042;MetaCyc: PWY-6901;MetaCyc: PWY-2221;MetaCyc: PWY-7003;Reactome: R-HSA-70171;KEGG: 00680+4.2.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-5723;Reactome: R-HSA-70263;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-1622	"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis / Gluconeogenesis";"Ethylene biosynthesis V (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Glycerol degradation to butanol";"Glycolysis";"Methane metabolism";"Glycolysis II (from fructose 6-phosphate)";"Rubisco shunt";"Gluconeogenesis";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Formaldehyde assimilation I (serine pathway)"
JAMg_model_11978.2	2	MetaCyc: PWY-7511;Reactome: R-HSA-5689880	"Protein ubiquitination";"Ub-specific processing proteases"
JAMg_model_12757.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_5375.1	26	Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-389960;Reactome: R-HSA-983189;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-389977;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399	"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Formation of tubulin folding intermediates by CCT/TriC";"Kinesins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Post-chaperonin tubulin folding pathway";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy"
JAMg_model_1945.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_2381.1	13	Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_3304.1	2	Reactome: R-HSA-171319;Reactome: R-HSA-6790901	"Telomere Extension By Telomerase";"rRNA modification in the nucleus and cytosol"
JAMg_model_6845.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_20628.1	1	Reactome: R-HSA-912446	"Meiotic recombination"
JAMg_model_11532.3	20	Reactome: R-HSA-1257604;Reactome: R-HSA-9639288;Reactome: R-HSA-1632852;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-166208;KEGG: 04926+2.7.11.1;Reactome: R-HSA-5628897;KEGG: 05163+2.7.11.1;Reactome: R-HSA-389357;KEGG: 05170+2.7.11.1;Reactome: R-HSA-5218920;Reactome: R-HSA-3371571;Reactome: R-HSA-165159;Reactome: R-HSA-8943724;KEGG: 04714+2.7.11.1;Reactome: R-HSA-6804757;Reactome: R-HSA-5674400;Reactome: R-HSA-380972	"PIP3 activates AKT signaling";"Amino acids regulate mTORC1";"Macroautophagy";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human papillomavirus infection";"mTORC1-mediated signalling";"Relaxin signaling pathway";"TP53 Regulates Metabolic Genes";"Human cytomegalovirus infection";"CD28 dependent PI3K/Akt signaling";"Human immunodeficiency virus 1 infection";"VEGFR2 mediated vascular permeability";"HSF1-dependent transactivation";"mTOR signalling";"Regulation of PTEN gene transcription";"Thermogenesis";"Regulation of TP53 Degradation";"Constitutive Signaling by AKT1 E17K in Cancer";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_3756.3	5	Reactome: R-HSA-1483148;KEGG: 00564+2.7.8.5;MetaCyc: PWY-5269;MetaCyc: PWY-5668;MetaCyc: PWY-7817	"Synthesis of PG";"Glycerophospholipid metabolism";"Cardiolipin biosynthesis II";"Cardiolipin biosynthesis I";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_504.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10328.7	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_16393.2	4	KEGG: 00640+4.1.1.9;KEGG: 00410+4.1.1.9;Reactome: R-HSA-9033241;Reactome: R-HSA-390247	"Propanoate metabolism";"beta-Alanine metabolism";"Peroxisomal protein import";"Beta-oxidation of very long chain fatty acids"
JAMg_model_10267.1	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_9208.2	16	Reactome: R-HSA-69017;Reactome: R-HSA-176412;Reactome: R-HSA-141430;Reactome: R-HSA-2559582;Reactome: R-HSA-174048;Reactome: R-HSA-176407;Reactome: R-HSA-174084;Reactome: R-HSA-174184;Reactome: R-HSA-176409;Reactome: R-HSA-174154;Reactome: R-HSA-2467813;Reactome: R-HSA-176408;Reactome: R-HSA-174178;Reactome: R-HSA-8853884;Reactome: R-HSA-179409;Reactome: R-HSA-983168	"CDK-mediated phosphorylation and removal of Cdc6";"Phosphorylation of the APC/C";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)";"APC/C:Cdc20 mediated degradation of Cyclin B";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Autodegradation of Cdh1 by Cdh1:APC/C";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of mitotic proteins";"APC/C:Cdc20 mediated degradation of Securin";"Separation of Sister Chromatids";"Regulation of APC/C activators between G1/S and early anaphase";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Transcriptional Regulation by VENTX";"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_13545.1	1	Reactome: R-HSA-381753	"Olfactory Signaling Pathway"
JAMg_model_7481.1	1	Reactome: R-HSA-5693571	"Nonhomologous End-Joining (NHEJ)"
JAMg_model_907.7	8	Reactome: R-HSA-8856828;Reactome: R-HSA-196025;Reactome: R-HSA-8856825;Reactome: R-HSA-3928665;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-190873;Reactome: R-HSA-432720	"Clathrin-mediated endocytosis";"Formation of annular gap junctions";"Cargo recognition for clathrin-mediated endocytosis";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Gap junction degradation";"Lysosome Vesicle Biogenesis"
JAMg_model_13912.1	7	KEGG: 00220+3.5.3.1;MetaCyc: PWY-6922;MetaCyc: PWY-46;MetaCyc: PWY-31;MetaCyc: PWY-4984;KEGG: 00330+3.5.3.1;Reactome: R-HSA-70635	"Arginine biosynthesis";"L-Ndelta-acetylornithine biosynthesis";"Putrescine biosynthesis III";"Canavanine degradation";"Urea cycle";"Arginine and proline metabolism";"Urea cycle"
JAMg_model_18117.4	12	MetaCyc: PWY-6936;MetaCyc: PWY-1187;KEGG: 00380+2.6.1.7;MetaCyc: PWY-601;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6309;Reactome: R-HSA-71240;MetaCyc: PWY-801;MetaCyc: PWY-7901;MetaCyc: PWY-2821;MetaCyc: PWY-6842;KEGG: 00270+4.4.1.13	"Seleno-amino acid biosynthesis (plants)";"Glucosinolate biosynthesis from homomethionine";"Tryptophan metabolism";"Glucosinolate biosynthesis from tryptophan";"Selenocompound metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Tryptophan catabolism";"Homocysteine and cysteine interconversion";"Glucosinolate biosynthesis from tyrosine";"Glucosinolate biosynthesis from phenylalanine";"Glutathione-mediated detoxification II";"Cysteine and methionine metabolism"
JAMg_model_10183.1	1	KEGG: 04070+2.7.11.13	"Phosphatidylinositol signaling system"
JAMg_model_16732.1	2	Reactome: R-HSA-382556;Reactome: R-HSA-5678895	"ABC-family proteins mediated transport";"Defective CFTR causes cystic fibrosis"
JAMg_model_12928.4	14	MetaCyc: PWY-3781;KEGG: 00020+1.3.5.1;MetaCyc: PWY-5690;MetaCyc: PWY-4302;MetaCyc: PWY-561;MetaCyc: PWY-6728;KEGG: 00720+1.3.5.1;MetaCyc: PWY-6969;KEGG: 00650+1.3.5.1;MetaCyc: PWY-7254;MetaCyc: PWY-7279;KEGG: 00190+1.3.5.1;Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Aerobic respiration I (cytochrome c)";"Citrate cycle (TCA cycle)";"TCA cycle II (plants and fungi)";"Aerobic respiration III (alternative oxidase pathway)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Methylaspartate cycle";"Carbon fixation pathways in prokaryotes";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Butanoate metabolism";"TCA cycle VII (acetate-producers)";"Aerobic respiration II (cytochrome c) (yeast)";"Oxidative phosphorylation";"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_20524.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_10600.1	14	Reactome: R-HSA-8948700;Reactome: R-HSA-203927;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8934593;Reactome: R-HSA-426486;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-9029569;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-426496	"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MicroRNA (miRNA) biogenesis";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Regulation of RUNX1 Expression and Activity";"Small interfering RNA (siRNA) biogenesis";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Post-transcriptional silencing by small RNAs"
JAMg_model_4858.1	2	Reactome: R-HSA-5362517;Reactome: R-HSA-204174	"Signaling by Retinoic Acid";"Regulation of pyruvate dehydrogenase (PDH) complex"
JAMg_model_1556.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8910.4	2	Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_2428.2	24	Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-983189;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148	"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Kinesins";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_5066.1	18	MetaCyc: PWY-7115;MetaCyc: PWY-6638;KEGG: 00220+2.6.1.1;KEGG: 00360+2.6.1.1;KEGG: 00960+2.6.1.1;MetaCyc: PWY-7117;KEGG: 00710+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00400+2.6.1.1;MetaCyc: PWY-6642;KEGG: 00950+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00250+2.6.1.1;KEGG: 00401+2.6.1.1;KEGG: 00270+2.6.1.1;MetaCyc: PWY-5913;MetaCyc: PWY-7383;MetaCyc: PWY-6643	"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Sulfolactate degradation III";"Arginine biosynthesis";"Phenylalanine metabolism";"Tropane, piperidine and pyridine alkaloid biosynthesis";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Carbon fixation in photosynthetic organisms";"Arginine and proline metabolism";"Phenylalanine, tyrosine and tryptophan biosynthesis";"(R)-cysteate degradation";"Isoquinoline alkaloid biosynthesis";"Tyrosine metabolism";"Alanine, aspartate and glutamate metabolism";"Novobiocin biosynthesis";"Cysteine and methionine metabolism";"Partial TCA cycle (obligate autotrophs)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Coenzyme M biosynthesis II"
JAMg_model_21196.1	1	Reactome: R-HSA-68962	"Activation of the pre-replicative complex"
JAMg_model_10858.1	7	KEGG: 00270+2.5.1.22;KEGG: 00330+2.5.1.22;Reactome: R-HSA-351202;KEGG: 00270+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00480+2.5.1.16;KEGG: 00480+2.5.1.22	"Cysteine and methionine metabolism";"Arginine and proline metabolism";"Metabolism of polyamines";"Cysteine and methionine metabolism";"Arginine and proline metabolism";"Glutathione metabolism";"Glutathione metabolism"
JAMg_model_1988.3	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_19538.1	14	MetaCyc: PWY-7725;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-5080;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7035;MetaCyc: PWY-5972;Reactome: R-HSA-75876;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036	"Arachidonate biosynthesis V (8-detaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II"
JAMg_model_21230.1	2	Reactome: R-HSA-8934593;Reactome: R-HSA-69231	"Regulation of RUNX1 Expression and Activity";"Cyclin D associated events in G1"
JAMg_model_6045.2	4	Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72163;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing"
JAMg_model_359.3	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_11741.2	24	Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-983189;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690	"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Kinesins";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events"
JAMg_model_16579.5	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_479.3	11	Reactome: R-HSA-170670;Reactome: R-HSA-5610787;Reactome: R-HSA-163615;Reactome: R-HSA-170660;KEGG: 00230+4.6.1.1;Reactome: R-HSA-418555;Reactome: R-HSA-164378;Reactome: R-HSA-163359;Reactome: R-HSA-418594;Reactome: R-HSA-418597;Reactome: R-HSA-432040	"Adenylate cyclase inhibitory pathway";"Hedgehog 'off' state";"PKA activation";"Adenylate cyclase activating pathway";"Purine metabolism";"G alpha (s) signalling events";"PKA activation in glucagon signalling";"Glucagon signaling in metabolic regulation";"G alpha (i) signalling events";"G alpha (z) signalling events";"Vasopressin regulates renal water homeostasis via Aquaporins"
JAMg_model_4562.1	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_2764.4	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_299.3	2	Reactome: R-HSA-983168;Reactome: R-HSA-110320	"Antigen processing: Ubiquitination & Proteasome degradation";"Translesion Synthesis by POLH"
JAMg_model_5154.1	1	Reactome: R-HSA-913709	"O-linked glycosylation of mucins"
JAMg_model_14590.1	3	Reactome: R-HSA-159236;Reactome: R-HSA-73856;Reactome: R-HSA-72187	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing"
JAMg_model_9736.3	2	Reactome: R-HSA-8866654;Reactome: R-HSA-9033241	"E3 ubiquitin ligases ubiquitinate target proteins";"Peroxisomal protein import"
JAMg_model_13456.1	2	Reactome: R-HSA-5673001;Reactome: R-HSA-442982	"RAF/MAP kinase cascade";"Ras activation upon Ca2+ influx through NMDA receptor"
JAMg_model_19071.2	29	Reactome: R-HSA-6804756;Reactome: R-HSA-110314;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-5655862;Reactome: R-HSA-6783310;Reactome: R-HSA-6782135;Reactome: R-HSA-912446;Reactome: R-HSA-3371511;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-3371453;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-69166;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5358606;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397	"Regulation of TP53 Activity through Phosphorylation";"Recognition of DNA damage by PCNA-containing replication complex";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Translesion synthesis by POLK";"Fanconi Anemia Pathway";"Dual incision in TC-NER";"Meiotic recombination";"HSF1 activation";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Regulation of HSF1-mediated heat shock response";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"Removal of the Flap Intermediate";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER"
JAMg_model_4976.3	7	MetaCyc: PWY-5469;MetaCyc: PWY-6824;MetaCyc: PWY-5466;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-7445;KEGG: 00940+1.11.1.7	"Sesamin biosynthesis";"Justicidin B biosynthesis";"Matairesinol biosynthesis";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation";"Phenylpropanoid biosynthesis"
JAMg_model_5874.4	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_7995.4	2	Reactome: R-HSA-418457;Reactome: R-HSA-1296052	"cGMP effects";"Ca2+ activated K+ channels"
JAMg_model_2543.1	2	Reactome: R-HSA-418890;Reactome: R-HSA-3295583	"Role of second messengers in netrin-1 signaling";"TRP channels"
JAMg_model_20427.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_19622.1	3	KEGG: 00790+3.1.3.1;MetaCyc: PWY-5491;KEGG: 00730+3.1.3.1	"Folate biosynthesis";"Diethylphosphate degradation";"Thiamine metabolism"
JAMg_model_5119.1	11	Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-1362277;Reactome: R-HSA-69205;Reactome: R-HSA-68827;Reactome: R-HSA-68616;Reactome: R-HSA-113507;Reactome: R-HSA-68867;Reactome: R-HSA-176187;Reactome: R-HSA-69017;Reactome: R-HSA-68689	"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Transcription of E2F targets under negative control by DREAM complex";"G1/S-Specific Transcription";"CDT1 association with the CDC6:ORC:origin complex";"Assembly of the ORC complex at the origin of replication";"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress";"CDK-mediated phosphorylation and removal of Cdc6";"CDC6 association with the ORC:origin complex"
JAMg_model_12752.1	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_9184.3	6	KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;Reactome: R-HSA-114508;MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107	"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Effects of PIP2 hydrolysis";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism"
JAMg_model_9110.1	1	Reactome: R-HSA-5658442	"Regulation of RAS by GAPs"
JAMg_model_7177.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_7696.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_7500.4	19	MetaCyc: PWY-7606;MetaCyc: PWY-7726;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7007;KEGG: 00410+1.3.3.6;MetaCyc: PWY-6837;MetaCyc: PWY-7337;MetaCyc: PWY-7574;MetaCyc: PWY-5136;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-7291;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7858;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7338;MetaCyc: PWY-7288	"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Propanoate metabolism";"Methyl ketone biosynthesis (engineered)";"beta-Alanine metabolism";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Propanoyl-coa degradation II";"Fatty acid beta-oxidation II (plant peroxisome)";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Fatty acid degradation";"(5Z)-dodecenoate biosynthesis II";"alpha-Linolenic acid metabolism";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)"
JAMg_model_4046.3	2	Reactome: R-HSA-8876198;Reactome: R-HSA-5357905	"RAB GEFs exchange GTP for GDP on RABs";"Regulation of TNFR1 signaling"
JAMg_model_4426.1	2	Reactome: R-HSA-983231;Reactome: R-HSA-8949215	"Factors involved in megakaryocyte development and platelet production";"Mitochondrial calcium ion transport"
JAMg_model_3319.3	22	Reactome: R-HSA-159236;KEGG: 00250+2.6.1.1;KEGG: 00270+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00401+2.6.1.1;Reactome: R-HSA-72187;MetaCyc: PWY-6643;Reactome: R-HSA-73856;MetaCyc: PWY-7383;KEGG: 00220+2.6.1.1;KEGG: 00360+2.6.1.1;MetaCyc: PWY-6638;MetaCyc: PWY-7115;MetaCyc: PWY-7117;KEGG: 00960+2.6.1.1;Reactome: R-HSA-72163;MetaCyc: PWY-6642;KEGG: 00710+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00400+2.6.1.1;KEGG: 00950+2.6.1.1;KEGG: 00350+2.6.1.1	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Alanine, aspartate and glutamate metabolism";"Cysteine and methionine metabolism";"Partial TCA cycle (obligate autotrophs)";"Novobiocin biosynthesis";"mRNA 3'-end processing";"Coenzyme M biosynthesis II";"RNA Polymerase II Transcription Termination";"Anaerobic energy metabolism (invertebrates, cytosol)";"Arginine biosynthesis";"Phenylalanine metabolism";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Tropane, piperidine and pyridine alkaloid biosynthesis";"mRNA Splicing - Major Pathway";"(R)-cysteate degradation";"Carbon fixation in photosynthetic organisms";"Arginine and proline metabolism";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Isoquinoline alkaloid biosynthesis";"Tyrosine metabolism"
JAMg_model_12313.3	1	Reactome: R-HSA-6787450	"tRNA modification in the mitochondrion"
JAMg_model_4185.1	2	Reactome: R-HSA-168928;Reactome: R-HSA-70350	"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"Fructose catabolism"
JAMg_model_12631.1	4	Reactome: R-HSA-1442490;Reactome: R-HSA-2022090;Reactome: R-HSA-8948216;Reactome: R-HSA-1650814	"Collagen degradation";"Assembly of collagen fibrils and other multimeric structures";"Collagen chain trimerization";"Collagen biosynthesis and modifying enzymes"
JAMg_model_9331.1	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_13098.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_10818.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_14765.4	3	Reactome: R-HSA-2980766;Reactome: R-HSA-2995383;Reactome: R-HSA-4419969	"Nuclear Envelope Breakdown";"Initiation of Nuclear Envelope Reformation";"Depolymerisation of the Nuclear Lamina"
JAMg_model_10638.1	16	Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Peptide chain elongation";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_19438.1	2	Reactome: R-HSA-425397;Reactome: R-HSA-5619061	"Transport of vitamins, nucleosides, and related molecules";"Defective SLC33A1 causes spastic paraplegia 42 (SPG42)"
JAMg_model_7807.1	3	Reactome: R-HSA-201681;Reactome: R-HSA-4641257;Reactome: R-HSA-5689880	"TCF dependent signaling in response to WNT";"Degradation of AXIN";"Ub-specific processing proteases"
JAMg_model_397.2	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_5876.4	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_18709.1	19	Reactome: R-HSA-194840;Reactome: R-HSA-114604;Reactome: R-HSA-5626467;Reactome: R-HSA-5663213;Reactome: R-HSA-5663220;Reactome: R-HSA-418885;Reactome: R-HSA-5625970;Reactome: R-HSA-8964616;Reactome: R-HSA-182971;Reactome: R-HSA-389359;Reactome: R-HSA-983231;Reactome: R-HSA-8950505;Reactome: R-HSA-525793;Reactome: R-HSA-3928662;Reactome: R-HSA-4420097;Reactome: R-HSA-428543;Reactome: R-HSA-2029482;Reactome: R-HSA-5627123;Reactome: R-HSA-5687128	"Rho GTPase cycle";"GPVI-mediated activation cascade";"RHO GTPases activate IQGAPs";"RHO GTPases Activate WASPs and WAVEs";"RHO GTPases Activate Formins";"DCC mediated attractive signaling";"RHO GTPases activate KTN1";"G beta:gamma signalling through CDC42";"EGFR downregulation";"CD28 dependent Vav1 pathway";"Factors involved in megakaryocyte development and platelet production";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Myogenesis";"EPHB-mediated forward signaling";"VEGFA-VEGFR2 Pathway";"Inactivation of CDC42 and RAC1";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases activate PAKs";"MAPK6/MAPK4 signaling"
JAMg_model_20663.1	5	Reactome: R-HSA-211976;Reactome: R-HSA-211945;Reactome: R-HSA-1989781;Reactome: R-HSA-8937144;Reactome: R-HSA-211981	"Endogenous sterols";"Phase I - Functionalization of compounds";"PPARA activates gene expression";"Aryl hydrocarbon receptor signalling";"Xenobiotics"
JAMg_model_9096.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_17775.6	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_583.2	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_21315.3	15	MetaCyc: PWY-7003;Reactome: R-HSA-70171;MetaCyc: PWY-6142;KEGG: 00620+2.7.1.40;MetaCyc: PWY-7218;MetaCyc: PWY-1042;KEGG: 00010+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-5484;MetaCyc: PWY-7383;KEGG: 00230+2.7.1.40;MetaCyc: PWY-5723;MetaCyc: PWY-2221;MetaCyc: PWY-6886;MetaCyc: PWY-8004	"Glycerol degradation to butanol";"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Pyruvate metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis IV (plant cytosol)";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Purine metabolism";"Rubisco shunt";"Entner-Doudoroff pathway III (semi-phosphorylative)";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I"
JAMg_model_12435.2	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_20787.10	32	Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-77075;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-72203;Reactome: R-HSA-76042;Reactome: R-HSA-6803529;Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-75955;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-73776	"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing";"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Promoter Escape"
JAMg_model_3237.3	13	Reactome: R-HSA-8866427;Reactome: R-HSA-416993;Reactome: R-HSA-2132295;Reactome: R-HSA-167590;Reactome: R-HSA-5099900;Reactome: R-HSA-177504;Reactome: R-HSA-5140745;Reactome: R-HSA-3928665;Reactome: R-HSA-8964038;Reactome: R-HSA-182218;Reactome: R-HSA-8856825;Reactome: R-HSA-437239;Reactome: R-HSA-8856828	"VLDLR internalisation and degradation";"Trafficking of GluR2-containing AMPA receptors";"MHC class II antigen presentation";"Nef Mediated CD4 Down-regulation";"WNT5A-dependent internalization of FZD4";"Retrograde neurotrophin signalling";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"EPH-ephrin mediated repulsion of cells";"LDL clearance";"Nef Mediated CD8 Down-regulation";"Cargo recognition for clathrin-mediated endocytosis";"Recycling pathway of L1";"Clathrin-mediated endocytosis"
JAMg_model_9777.1	5	Reactome: R-HSA-73863;Reactome: R-HSA-73762;Reactome: R-HSA-73772;Reactome: R-HSA-427413;Reactome: R-HSA-5250924	"RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation";"RNA Polymerase I Promoter Escape";"NoRC negatively regulates rRNA expression";"B-WICH complex positively regulates rRNA expression"
JAMg_model_20961.2	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_15621.2	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_19030.2	5	KEGG: 00250+1.2.1.88;Reactome: R-HSA-389661;Reactome: R-HSA-70688;MetaCyc: PWY-6853;KEGG: 00330+1.2.1.88	"Alanine, aspartate and glutamate metabolism";"Glyoxylate metabolism and glycine degradation";"Proline catabolism";"Ethylene biosynthesis II (microbes)";"Arginine and proline metabolism"
JAMg_model_8153.5	3	Reactome: R-HSA-977347;KEGG: 00680+3.1.3.3;KEGG: 00260+3.1.3.3	"Serine biosynthesis";"Methane metabolism";"Glycine, serine and threonine metabolism"
JAMg_model_12634.1	6	Reactome: R-HSA-68867;Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-176974;Reactome: R-HSA-176187;Reactome: R-HSA-69052	"Assembly of the pre-replicative complex";"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Unwinding of DNA";"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state"
JAMg_model_19062.2	8	KEGG: 00330+1.5.5.2;Reactome: R-HSA-1650814;Reactome: R-HSA-8948216;Reactome: R-HSA-2022090;Reactome: R-HSA-1442490;MetaCyc: PWY-5737;MetaCyc: PWY-6922;Reactome: R-HSA-70688	"Arginine and proline metabolism";"Collagen biosynthesis and modifying enzymes";"Collagen chain trimerization";"Assembly of collagen fibrils and other multimeric structures";"Collagen degradation";"(5R)-carbapenem carboxylate biosynthesis";"L-Ndelta-acetylornithine biosynthesis";"Proline catabolism"
JAMg_model_7404.2	2	Reactome: R-HSA-203927;Reactome: R-HSA-426486	"MicroRNA (miRNA) biogenesis";"Small interfering RNA (siRNA) biogenesis"
JAMg_model_3663.4	5	KEGG: 00983+2.7.1.21;Reactome: R-HSA-73614;MetaCyc: PWY-7199;KEGG: 00240+2.7.1.21;Reactome: R-HSA-69205	"Drug metabolism - other enzymes";"Pyrimidine salvage";"Pyrimidine deoxyribonucleosides salvage";"Pyrimidine metabolism";"G1/S-Specific Transcription"
JAMg_model_15213.1	2	KEGG: 00510+2.4.1.256;Reactome: R-HSA-446193	"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein"
JAMg_model_18911.1	2	Reactome: R-HSA-1237112;KEGG: 00270+3.1.3.77	"Methionine salvage pathway";"Cysteine and methionine metabolism"
JAMg_model_4701.3	4	MetaCyc: PWY-5874;KEGG: 00860+1.14.14.18;Reactome: R-HSA-189483;Reactome: R-HSA-917937	"Heme degradation I";"Porphyrin and chlorophyll metabolism";"Heme degradation";"Iron uptake and transport"
JAMg_model_1771.1	2	KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_13823.1	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_16473.1	14	Reactome: R-HSA-196757;MetaCyc: PWY-3841;KEGG: 00460+2.1.2.1;KEGG: 00630+2.1.2.1;KEGG: 00680+2.1.2.1;KEGG: 00670+2.1.2.1;MetaCyc: PWY-1622;MetaCyc: PWY-5497;MetaCyc: PWY-2201;KEGG: 00260+2.1.2.1;MetaCyc: PWY-2161;MetaCyc: PWY-3661;MetaCyc: PWY-181;MetaCyc: PWY-3661-1	"Metabolism of folate and pterines";"Folate transformations II (plants)";"Cyanoamino acid metabolism";"Glyoxylate and dicarboxylate metabolism";"Methane metabolism";"One carbon pool by folate";"Formaldehyde assimilation I (serine pathway)";"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"Glycine, serine and threonine metabolism";"Folate polyglutamylation";"Glycine betaine degradation I";"Photorespiration ";"Glycine betaine degradation II (mammalian)"
JAMg_model_12230.1	7	KEGG: 05163+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1	"Human cytomegalovirus infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection"
JAMg_model_12965.2	4	Reactome: R-HSA-5358346;Reactome: R-HSA-5362768;Reactome: R-HSA-382556;Reactome: R-HSA-5678895	"Hedgehog ligand biogenesis";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"ABC-family proteins mediated transport";"Defective CFTR causes cystic fibrosis"
JAMg_model_12626.1	4	MetaCyc: PWY-2781;Reactome: R-HSA-6787450;KEGG: 00908+2.5.1.75;Reactome: R-HSA-6782315	"Cis-zeatin biosynthesis";"tRNA modification in the mitochondrion";"Zeatin biosynthesis";"tRNA modification in the nucleus and cytosol"
JAMg_model_12807.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_3411.3	1	Reactome: R-HSA-977347	"Serine biosynthesis"
JAMg_model_10767.2	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956	"Viral mRNA Translation";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_19716.2	5	KEGG: 00514+2.4.1.109;MetaCyc: PWY-7921;MetaCyc: PWY-7922;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7979	"Other types of O-glycan biosynthesis";"Protein O-mannosylation I (yeast)";"Protein O-mannosylation II (mammals, core M1 and core M2)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation III (mammals, core M3)"
JAMg_model_8336.1	3	Reactome: R-HSA-8943724;Reactome: R-HSA-2559580;Reactome: R-HSA-8939243	"Regulation of PTEN gene transcription";"Oxidative Stress Induced Senescence";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_15111.1	4	KEGG: 05235+3.1.3.16;Reactome: R-HSA-180024;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"DARPP-32 events";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_2928.1	7	KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1	"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection"
JAMg_model_8803.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_21103.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_11895.3	5	MetaCyc: PWY-7159;MetaCyc: PWY-5531;KEGG: 00860+4.1.1.37;Reactome: R-HSA-189451;MetaCyc: PWY-7766	"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis";"Heme b biosynthesis IV (Gram-positive bacteria)"
JAMg_model_13358.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_21161.1	7	Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-8854518;Reactome: R-HSA-2565942	"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_10740.2	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_838.1	1	Reactome: R-HSA-5683826	"Surfactant metabolism"
JAMg_model_15706.1	6	MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656;MetaCyc: PWY-5884;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84	"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis"
JAMg_model_19624.1	56	Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-174084	"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C"
JAMg_model_9202.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_16396.1	56	Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-180534	"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"ABC-family proteins mediated transport";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4"
JAMg_model_4485.7	4	MetaCyc: PWY-7437;Reactome: R-HSA-3214847;KEGG: 00514+2.4.1.255;Reactome: R-HSA-5689603	"Protein O-[N-acetyl]-glucosylation";"HATs acetylate histones";"Other types of O-glycan biosynthesis";"UCH proteinases"
JAMg_model_20943.2	2	Reactome: R-HSA-156588;Reactome: R-HSA-6798163	"Glucuronidation";"Choline catabolism"
JAMg_model_6292.1	1	KEGG: 00970+6.1.1.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_12329.3	14	KEGG: 00190+1.3.5.1;MetaCyc: PWY-7279;Reactome: R-HSA-611105;Reactome: R-HSA-71403;MetaCyc: PWY-6969;KEGG: 00650+1.3.5.1;MetaCyc: PWY-7254;MetaCyc: PWY-561;KEGG: 00720+1.3.5.1;MetaCyc: PWY-6728;MetaCyc: PWY-3781;KEGG: 00020+1.3.5.1;MetaCyc: PWY-4302;MetaCyc: PWY-5690	"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"Respiratory electron transport";"Citric acid cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Butanoate metabolism";"TCA cycle VII (acetate-producers)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Aerobic respiration I (cytochrome c)";"Citrate cycle (TCA cycle)";"Aerobic respiration III (alternative oxidase pathway)";"TCA cycle II (plants and fungi)"
JAMg_model_9473.4	8	MetaCyc: PWY-7117;MetaCyc: PWY-5743;KEGG: 00910+4.2.1.1;MetaCyc: PWY-6142;MetaCyc: PWY-7115;MetaCyc: PWY-5789;MetaCyc: PWY-241;MetaCyc: PWY-5744	"C4 photosynthetic carbon assimilation cycle, PEPCK type";"3-hydroxypropanoate cycle";"Nitrogen metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle";"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"Glyoxylate assimilation"
JAMg_model_20188.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_15102.1	2	MetaCyc: PWY-7799;MetaCyc: PWY-7800	"Arg/N-end rule pathway (eukaryotic)";"Ac/N-end rule pathway"
JAMg_model_9932.2	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_9953.1	1	Reactome: R-HSA-1445148	"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_17550.2	8	Reactome: R-HSA-6781823;Reactome: R-HSA-8948747;Reactome: R-HSA-6782210;Reactome: R-HSA-8866652;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-6804757;Reactome: R-HSA-5689880	"Formation of TC-NER Pre-Incision Complex";"Regulation of PTEN localization";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Synthesis of active ubiquitin: roles of E1 and E2 enzymes";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Regulation of TP53 Degradation";"Ub-specific processing proteases"
JAMg_model_559.3	16	Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-6791226;Reactome: R-HSA-72702	"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition"
JAMg_model_16528.2	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_4972.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_1174.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_5776.1	3	Reactome: R-HSA-1614603;Reactome: R-HSA-2408508;Reactome: R-HSA-1614558	"Cysteine formation from homocysteine";"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Degradation of cysteine and homocysteine"
JAMg_model_1116.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_2182.3	4	Reactome: R-HSA-2644606;Reactome: R-HSA-350054;Reactome: R-HSA-2122947;Reactome: R-HSA-2894862	"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Notch-HLH transcription pathway";"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants"
JAMg_model_8336.2	3	Reactome: R-HSA-2559580;Reactome: R-HSA-8943724;Reactome: R-HSA-8939243	"Oxidative Stress Induced Senescence";"Regulation of PTEN gene transcription";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_18188.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_10124.5	6	KEGG: 00630+4.2.1.3;KEGG: 00720+4.2.1.3;Reactome: R-HSA-1268020;KEGG: 00290+4.2.1.33;Reactome: R-HSA-71403;KEGG: 00020+4.2.1.3	"Glyoxylate and dicarboxylate metabolism";"Carbon fixation pathways in prokaryotes";"Mitochondrial protein import";"Valine, leucine and isoleucine biosynthesis";"Citric acid cycle (TCA cycle)";"Citrate cycle (TCA cycle)"
JAMg_model_18090.6	3	Reactome: R-HSA-947581;MetaCyc: PWY-6823;KEGG: 00790+4.1.99.22	"Molybdenum cofactor biosynthesis";"Molybdenum cofactor biosynthesis";"Folate biosynthesis"
JAMg_model_4152.1	7	KEGG: 04070+3.1.3.36;KEGG: 00562+3.1.3.36;MetaCyc: PWY-6368;Reactome: R-HSA-8856828;Reactome: R-HSA-1855183;Reactome: R-HSA-1855204;Reactome: R-HSA-1660499	"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"3-phosphoinositide degradation";"Clathrin-mediated endocytosis";"Synthesis of IP2, IP, and Ins in the cytosol";"Synthesis of IP3 and IP4 in the cytosol";"Synthesis of PIPs at the plasma membrane"
JAMg_model_5690.4	2	Reactome: R-HSA-606279;Reactome: R-HSA-6783310	"Deposition of new CENPA-containing nucleosomes at the centromere";"Fanconi Anemia Pathway"
JAMg_model_15441.3	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_12597.1	10	Reactome: R-HSA-9639288;Reactome: R-HSA-381038;KEGG: 00195+7.1.2.2;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-1799339;Reactome: R-HSA-1222556;MetaCyc: PWY-7980;KEGG: 00190+7.1.2.2;Reactome: R-HSA-983712	"Amino acids regulate mTORC1";"XBP1(S) activates chaperone genes";"Photosynthesis";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"SRP-dependent cotranslational protein targeting to membrane";"ROS and RNS production in phagocytes";"ATP biosynthesis";"Oxidative phosphorylation";"Ion channel transport"
JAMg_model_5212.2	4	MetaCyc: PWY-6482;Reactome: R-HSA-8849175;MetaCyc: PWY-7546;Reactome: R-HSA-5358493	"Diphthamide biosynthesis I (archaea)";"Threonine catabolism";"Diphthamide biosynthesis II (eukaryotes)";"Synthesis of diphthamide-EEF2"
JAMg_model_4116.8	3	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer"
JAMg_model_19655.4	3	MetaCyc: PWY-7856;Reactome: R-HSA-189451;KEGG: 00860+2.5.1.141	"Heme a biosynthesis";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism"
JAMg_model_5776.8	3	Reactome: R-HSA-1614558;Reactome: R-HSA-2408508;Reactome: R-HSA-1614603	"Degradation of cysteine and homocysteine";"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Cysteine formation from homocysteine"
JAMg_model_9277.3	3	Reactome: R-HSA-8866654;Reactome: R-HSA-9603798;Reactome: R-HSA-9033241	"E3 ubiquitin ligases ubiquitinate target proteins";"Class I peroxisomal membrane protein import";"Peroxisomal protein import"
JAMg_model_6903.1	16	Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Viral mRNA Translation";"Peptide chain elongation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_13791.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_10328.6	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_299.1	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_10134.3	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_2777.2	14	Reactome: R-HSA-426496;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-1912408;Reactome: R-HSA-426486;Reactome: R-HSA-4086398;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-203927	"Post-transcriptional silencing by small RNAs";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Pre-NOTCH Transcription and Translation";"Small interfering RNA (siRNA) biogenesis";"Ca2+ pathway";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"MicroRNA (miRNA) biogenesis"
JAMg_model_14919.1	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_8760.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_2592.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_10992.6	2	MetaCyc: PWY-6854;Reactome: R-HSA-3299685	"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species"
JAMg_model_11691.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_6290.1	3	KEGG: 00511+3.2.1.45;KEGG: 00600+3.2.1.45;Reactome: R-HSA-1660662	"Other glycan degradation";"Sphingolipid metabolism";"Glycosphingolipid metabolism"
JAMg_model_20078.1	5	KEGG: 00534+2.4.1.224+2.4.1.225;Reactome: R-HSA-2022928;MetaCyc: PWY-6558;Reactome: R-HSA-3656237;Reactome: R-HSA-3656253	"Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"HS-GAG biosynthesis";"Heparan sulfate biosynthesis (late stages)";"Defective EXT2 causes exostoses 2";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS"
JAMg_model_2842.5	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4583.1	7	Reactome: R-HSA-191273;MetaCyc: PWY-6074;KEGG: 00100+1.3.1.70;Reactome: R-HSA-9022692;MetaCyc: PWY-8026;MetaCyc: PWY-7154;MetaCyc: PWY-2541	"Cholesterol biosynthesis";"Zymosterol biosynthesis";"Steroid biosynthesis";"Regulation of MECP2 expression and activity";"Sterol biosynthesis (methylotrophs)";"Ergosterol biosynthesis II";"Phytosterol biosynthesis (plants)"
JAMg_model_8917.1	9	MetaCyc: PWY-7883;KEGG: 00513+3.2.1.52;MetaCyc: PWY-6902;KEGG: 00531+3.2.1.52;MetaCyc: PWY-7822;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52	"Anhydromuropeptides recycling II";"Various types of N-glycan biosynthesis";"Chitin degradation II (Vibrio)";"Glycosaminoglycan degradation";"Chitin degradation III (Serratia)";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation"
JAMg_model_2657.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_12688.3	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_8468.2	3	Reactome: R-HSA-5423646;MetaCyc: PWY-7533;Reactome: R-HSA-2142691	"Aflatoxin activation and detoxification";"Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_5924.6	3	Reactome: R-HSA-8951664;Reactome: R-HSA-349425;MetaCyc: PWY-7511	"Neddylation";"Autodegradation of the E3 ubiquitin ligase COP1";"Protein ubiquitination"
JAMg_model_496.2	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_19012.1	2	Reactome: R-HSA-162710;KEGG: 00563+2.4.1.198	"Synthesis of glycosylphosphatidylinositol (GPI)";"Glycosylphosphatidylinositol (GPI)-anchor biosynthesis"
JAMg_model_16687.1	13	Reactome: R-HSA-2024101;Reactome: R-HSA-2022857;MetaCyc: PWY-7883;KEGG: 00513+3.2.1.52;Reactome: R-HSA-1660662;KEGG: 00511+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00604+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00603+3.2.1.52;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52	"CS/DS degradation";"Keratan sulfate degradation";"Anhydromuropeptides recycling II";"Various types of N-glycan biosynthesis";"Glycosphingolipid metabolism";"Other glycan degradation";"Amino sugar and nucleotide sugar metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation"
JAMg_model_9577.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_3469.1	2	Reactome: R-HSA-8856828;Reactome: R-HSA-5627123	"Clathrin-mediated endocytosis";"RHO GTPases activate PAKs"
JAMg_model_9186.3	6	Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107	"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism"
JAMg_model_4220.1	2	Reactome: R-HSA-425366;Reactome: R-HSA-1483191	"Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC"
JAMg_model_17241.1	6	Reactome: R-HSA-8874081;Reactome: R-HSA-2022090;Reactome: R-HSA-1650814;Reactome: R-HSA-3000171;Reactome: R-HSA-8948216;Reactome: R-HSA-1442490	"MET activates PTK2 signaling";"Assembly of collagen fibrils and other multimeric structures";"Collagen biosynthesis and modifying enzymes";"Non-integrin membrane-ECM interactions";"Collagen chain trimerization";"Collagen degradation"
JAMg_model_12705.1	2	Reactome: R-HSA-6804758;Reactome: R-HSA-3214847	"Regulation of TP53 Activity through Acetylation";"HATs acetylate histones"
JAMg_model_13649.2	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_5094.1	7	Reactome: R-HSA-2691232;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-9013507;Reactome: R-HSA-2979096;Reactome: R-HSA-2660826;Reactome: R-HSA-2122948	"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Activated NOTCH1 Transmits Signal to the Nucleus"
JAMg_model_11146.1	2	KEGG: 00970+6.1.1.9;Reactome: R-HSA-379716	"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_9228.1	16	Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_17118.1	1	Reactome: R-HSA-9609523	"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_20034.1	14	Reactome: R-HSA-5696397;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-6782210;Reactome: R-HSA-69091;Reactome: R-HSA-6782135;Reactome: R-HSA-5655862;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-110314;Reactome: R-HSA-5685942;Reactome: R-HSA-174411;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Polymerase switching";"Dual incision in TC-NER";"Translesion synthesis by POLK";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"Recognition of DNA damage by PCNA-containing replication complex";"HDR through Homologous Recombination (HRR)";"Polymerase switching on the C-strand of the telomere";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI"
JAMg_model_8159.4	12	MetaCyc: PWY-1861;MetaCyc: PWY-6142;Reactome: R-HSA-70171;KEGG: 00030+4.1.2.13;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00680+4.1.2.13;KEGG: 00710+4.1.2.13;MetaCyc: PWY-5484;MetaCyc: PWY-1042	"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Pentose phosphate pathway";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Methane metabolism";"Carbon fixation in photosynthetic organisms";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)"
JAMg_model_19465.3	30	Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-8939902;Reactome: R-HSA-917937;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8951664;Reactome: R-HSA-2871837;Reactome: R-HSA-5610783;Reactome: R-HSA-2122947;Reactome: R-HSA-5610780;Reactome: R-HSA-5676590;Reactome: R-HSA-1170546;Reactome: R-HSA-5610785;Reactome: R-HSA-187577;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5684264;Reactome: R-HSA-180534;Reactome: R-HSA-9604323;Reactome: R-HSA-2565942;Reactome: R-HSA-195253;Reactome: R-HSA-2644607;Reactome: R-HSA-400253;Reactome: R-HSA-2894862;Reactome: R-HSA-5607764;Reactome: R-HSA-2644606;Reactome: R-HSA-69231	"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of RUNX2 expression and activity";"Iron uptake and transport";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Neddylation";"FCERI mediated NF-kB activation";"Degradation of GLI2 by the proteasome";"NOTCH1 Intracellular Domain Regulates Transcription";"Degradation of GLI1 by the proteasome";"NIK-->noncanonical NF-kB signaling";"Prolactin receptor signaling";"GLI3 is processed to GLI3R by the proteasome";"SCF(Skp2)-mediated degradation of p27/p21";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Vpu mediated degradation of CD4";"Negative regulation of NOTCH4 signaling";"Regulation of PLK1 Activity at G2/M Transition";"Degradation of beta-catenin by the destruction complex";"Loss of Function of FBXW7 in Cancer and NOTCH1 Signaling";"Circadian Clock";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"CLEC7A (Dectin-1) signaling";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Cyclin D associated events in G1"
JAMg_model_12749.2	12	Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-141444;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-2132295;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878	"Mitotic Prometaphase";"HCMV Early Events";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"MHC class II antigen presentation";"Separation of Sister Chromatids";"COPI-mediated anterograde transport"
JAMg_model_15510.1	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878	"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport"
JAMg_model_14563.1	1	Reactome: R-HSA-2428928	"IRS-related events triggered by IGF1R"
JAMg_model_12336.1	10	Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-2426168;Reactome: R-HSA-2514853;Reactome: R-HSA-1368108;Reactome: R-HSA-2151201;Reactome: R-HSA-1989781;Reactome: R-HSA-191859;Reactome: R-HSA-1368082;Reactome: R-HSA-400253	"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"Activation of gene expression by SREBF (SREBP)";"Condensation of Prometaphase Chromosomes";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Transcriptional activation of mitochondrial biogenesis";"PPARA activates gene expression";"snRNP Assembly";"RORA activates gene expression";"Circadian Clock"
JAMg_model_6436.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_20873.3	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_10062.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_18918.3	3	Reactome: R-HSA-70268;MetaCyc: PWY-5386;KEGG: 00620+4.4.1.5	"Pyruvate metabolism";"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_11953.1	15	Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-8853884;Reactome: R-HSA-2559585;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-8986944	"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by MECP2"
JAMg_model_16707.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_19288.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_19537.1	14	MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-5080;MetaCyc: PWY-7725;MetaCyc: PWY-6433;MetaCyc: PWY-7602;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-7035;MetaCyc: PWY-5972	"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Fatty acid elongation";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)"
JAMg_model_21022.2	13	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_6843.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15761.2	5	Reactome: R-HSA-1234176;Reactome: R-HSA-1234174;Reactome: R-HSA-8951664;Reactome: R-HSA-1234158;Reactome: R-HSA-8849473	"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Cellular response to hypoxia";"Neddylation";"Regulation of gene expression by Hypoxia-inducible Factor";"PTK6 Expression"
JAMg_model_13756.3	7	Reactome: R-HSA-381340;Reactome: R-HSA-2173796;Reactome: R-HSA-1989781;Reactome: R-HSA-2644606;Reactome: R-HSA-212436;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947	"Transcriptional regulation of white adipocyte differentiation";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"PPARA activates gene expression";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Generic Transcription Pathway";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription"
JAMg_model_8069.1	10	Reactome: R-HSA-9018519;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-6807505;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-76042	"Estrogen-dependent gene expression";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance"
JAMg_model_8122.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_14022.2	1	Reactome: R-HSA-375276	"Peptide ligand-binding receptors"
JAMg_model_8954.1	6	Reactome: R-HSA-983168;MetaCyc: PWY-7511;Reactome: R-HSA-8939902;Reactome: R-HSA-8948751;Reactome: R-HSA-2173788;Reactome: R-HSA-8863795	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination";"Regulation of RUNX2 expression and activity";"Regulation of PTEN stability and activity";"Downregulation of TGF-beta receptor signaling";"Downregulation of ERBB2 signaling"
JAMg_model_11500.3	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_8481.3	2	Reactome: R-HSA-203927;Reactome: R-HSA-8986944	"MicroRNA (miRNA) biogenesis";"Transcriptional Regulation by MECP2"
JAMg_model_6953.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_21107.1	2	MetaCyc: PWY-6281;KEGG: 00450+2.7.9.3	"L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Selenocompound metabolism"
JAMg_model_7742.1	1	Reactome: R-HSA-5625900	"RHO GTPases activate CIT"
JAMg_model_18161.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_13501.4	6	Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_1216.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4351.2	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_11027.2	3	MetaCyc: PWY-5669;KEGG: 00564+4.1.1.65;Reactome: R-HSA-1483213	"Phosphatidylserine and phosphatidylethanolamine biosynthesis I";"Glycerophospholipid metabolism";"Synthesis of PE"
JAMg_model_8481.6	2	Reactome: R-HSA-8986944;Reactome: R-HSA-203927	"Transcriptional Regulation by MECP2";"MicroRNA (miRNA) biogenesis"
JAMg_model_12130.5	24	Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-983189;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399	"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HCMV Early Events";"Mitotic Prometaphase";"Kinesins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy"
JAMg_model_20154.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_12862.1	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_10947.2	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_18325.4	2	Reactome: R-HSA-390522;Reactome: R-HSA-445355	"Striated Muscle Contraction";"Smooth Muscle Contraction"
JAMg_model_5682.1	1	Reactome: R-HSA-3295583	"TRP channels"
JAMg_model_2968.1	19	Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-8876725;Reactome: R-HSA-6790901;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-3214858	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Protein methylation";"rRNA modification in the nucleus and cytosol";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"Peptide chain elongation";"RMTs methylate histone arginines"
JAMg_model_12148.5	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_11740.1	9	Reactome: R-HSA-69091;Reactome: R-HSA-69166;Reactome: R-HSA-68952;Reactome: R-HSA-174411;Reactome: R-HSA-6784531;Reactome: R-HSA-174430;Reactome: R-HSA-113501;Reactome: R-HSA-69183;Reactome: R-HSA-68962	"Polymerase switching";"Removal of the Flap Intermediate";"DNA replication initiation";"Polymerase switching on the C-strand of the telomere";"tRNA processing in the nucleus";"Telomere C-strand synthesis initiation";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Processive synthesis on the lagging strand";"Activation of the pre-replicative complex"
JAMg_model_9493.1	1	MetaCyc: PWY-6308	"L-cysteine biosynthesis II (tRNA-dependent)"
JAMg_model_12986.1	2	KEGG: 00500+3.2.1.28;Reactome: R-HSA-189085	"Starch and sucrose metabolism";"Digestion of dietary carbohydrate"
JAMg_model_2248.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_12421.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_4429.1	2	Reactome: R-HSA-983231;Reactome: R-HSA-8949215	"Factors involved in megakaryocyte development and platelet production";"Mitochondrial calcium ion transport"
JAMg_model_10005.3	4	MetaCyc: PWY-8072;MetaCyc: PWY-8040;KEGG: 00473+5.1.1.1;MetaCyc: PWY-7383	"Alanine racemization";"Ansatrienin biosynthesis";"D-Alanine metabolism";"Anaerobic energy metabolism (invertebrates, cytosol)"
JAMg_model_9310.2	4	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8;Reactome: R-HSA-499943;Reactome: R-HSA-2161541	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Interconversion of nucleotide di- and triphosphates";"Abacavir metabolism"
JAMg_model_7369.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_10328.2	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_7190.2	12	Reactome: R-HSA-193648;Reactome: R-HSA-416476;KEGG: 04926+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885	"NRAGE signals death through JNK";"G alpha (q) signalling events";"Relaxin signaling pathway";"Rho GTPase cycle";"Human papillomavirus infection";"Thermogenesis";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events";"Human cytomegalovirus infection";"DCC mediated attractive signaling"
JAMg_model_7381.3	7	MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-7214	"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Betanidin degradation";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)"
JAMg_model_6267.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_9617.1	2	Reactome: R-HSA-877300;Reactome: R-HSA-2132295	"Interferon gamma signaling";"MHC class II antigen presentation"
JAMg_model_389.1	2	Reactome: R-HSA-189451;KEGG: 00860+4.99.1.1	"Heme biosynthesis";"Porphyrin and chlorophyll metabolism"
JAMg_model_9563.2	5	Reactome: R-HSA-6814122;Reactome: R-HSA-389960;Reactome: R-HSA-390450;Reactome: R-HSA-390471;Reactome: R-HSA-389957	"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Formation of tubulin folding intermediates by CCT/TriC";"Folding of actin by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_15291.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_11112.1	27	Reactome: R-HSA-4570464;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-3232142;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-168333;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-5619107;Reactome: R-HSA-159230;Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-159236;Reactome: R-HSA-4085377;Reactome: R-HSA-4551638	"SUMOylation of RNA binding proteins";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of ubiquitinylation proteins";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"SUMOylation of DNA replication proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Transport of the SLBP Dependant Mature mRNA";"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins"
JAMg_model_12148.1	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_17730.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_13639.1	13	Reactome: R-HSA-3000178;Reactome: R-HSA-419037;Reactome: R-HSA-1442490;Reactome: R-HSA-216083;Reactome: R-HSA-1650814;Reactome: R-HSA-2214320;Reactome: R-HSA-8948216;Reactome: R-HSA-3000171;Reactome: R-HSA-2022090;Reactome: R-HSA-1474244;Reactome: R-HSA-3000157;Reactome: R-HSA-186797;Reactome: R-HSA-2243919	"ECM proteoglycans";"NCAM1 interactions";"Collagen degradation";"Integrin cell surface interactions";"Collagen biosynthesis and modifying enzymes";"Anchoring fibril formation";"Collagen chain trimerization";"Non-integrin membrane-ECM interactions";"Assembly of collagen fibrils and other multimeric structures";"Extracellular matrix organization";"Laminin interactions";"Signaling by PDGF";"Crosslinking of collagen fibrils"
JAMg_model_7795.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-8873719	"RAB GEFs exchange GTP for GDP on RABs";"RAB geranylgeranylation"
JAMg_model_6482.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_11442.2	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_11988.2	2	Reactome: R-HSA-171319;Reactome: R-HSA-6790901	"Telomere Extension By Telomerase";"rRNA modification in the nucleus and cytosol"
JAMg_model_9238.1	6	MetaCyc: PWY-7656;Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-6733;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84	"Spodoptera littoralis pheromone biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis";"Sporopollenin precursors biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis"
JAMg_model_18125.2	9	KEGG: 00513+3.2.1.52;MetaCyc: PWY-7883;MetaCyc: PWY-6902;KEGG: 00531+3.2.1.52;MetaCyc: PWY-7822;KEGG: 00603+3.2.1.52;KEGG: 00604+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52	"Various types of N-glycan biosynthesis";"Anhydromuropeptides recycling II";"Chitin degradation II (Vibrio)";"Glycosaminoglycan degradation";"Chitin degradation III (Serratia)";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Glycosphingolipid biosynthesis - ganglio series";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation"
JAMg_model_3081.1	3	Reactome: R-HSA-983168;MetaCyc: PWY-7511;Reactome: R-HSA-5689880	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination";"Ub-specific processing proteases"
JAMg_model_6941.5	1	Reactome: R-HSA-499943	"Interconversion of nucleotide di- and triphosphates"
JAMg_model_17277.1	6	Reactome: R-HSA-71336;KEGG: 00040+5.1.3.1;MetaCyc: PWY-1861;KEGG: 00030+5.1.3.1;KEGG: 00710+5.1.3.1;MetaCyc: PWY-5723	"Pentose phosphate pathway";"Pentose and glucuronate interconversions";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Pentose phosphate pathway";"Carbon fixation in photosynthetic organisms";"Rubisco shunt"
JAMg_model_5296.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_13388.1	7	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76071	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 3 Promoter"
JAMg_model_21084.1	1	Reactome: R-HSA-5693571	"Nonhomologous End-Joining (NHEJ)"
JAMg_model_8591.1	3	MetaCyc: PWY-8099;MetaCyc: PWY-7158;KEGG: 00790+4.2.1.96	"Tetrahydropteridine recycling";"L-phenylalanine degradation V";"Folate biosynthesis"
JAMg_model_4284.1	14	MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7725;MetaCyc: PWY-5080;MetaCyc: PWY-8041;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036;KEGG: 00062+2.3.1.199;MetaCyc: PWY-5972;MetaCyc: PWY-7035;Reactome: R-HSA-75876	"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Ultra-long-chain fatty acid biosynthesis";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Fatty acid elongation";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs"
JAMg_model_10510.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_7812.1	1	Reactome: R-HSA-2151201	"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_5258.2	2	Reactome: R-HSA-72163;Reactome: R-HSA-430039	"mRNA Splicing - Major Pathway";"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_3236.1	1	Reactome: R-HSA-5419276	"Mitochondrial translation termination"
JAMg_model_18117.9	12	MetaCyc: PWY-6936;MetaCyc: PWY-1187;MetaCyc: PWY-601;KEGG: 00380+2.6.1.7;MetaCyc: PWY-6309;KEGG: 00450+4.4.1.13;MetaCyc: PWY-2821;MetaCyc: PWY-801;Reactome: R-HSA-71240;MetaCyc: PWY-7901;MetaCyc: PWY-6842;KEGG: 00270+4.4.1.13	"Seleno-amino acid biosynthesis (plants)";"Glucosinolate biosynthesis from homomethionine";"Glucosinolate biosynthesis from tryptophan";"Tryptophan metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Selenocompound metabolism";"Glucosinolate biosynthesis from phenylalanine";"Homocysteine and cysteine interconversion";"Tryptophan catabolism";"Glucosinolate biosynthesis from tyrosine";"Glutathione-mediated detoxification II";"Cysteine and methionine metabolism"
JAMg_model_8935.1	4	Reactome: R-HSA-5696394;Reactome: R-HSA-5696395;Reactome: R-HSA-3108214;Reactome: R-HSA-532668	"DNA Damage Recognition in GG-NER";"Formation of Incision Complex in GG-NER";"SUMOylation of DNA damage response and repair proteins";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle"
JAMg_model_6991.1	10	Reactome: R-HSA-9636383;Reactome: R-HSA-182971;Reactome: R-HSA-5689880;Reactome: R-HSA-9635644;Reactome: R-HSA-432720;Reactome: R-HSA-8875360;Reactome: R-HSA-6807004;Reactome: R-HSA-917729;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828	"Prevention of phagosomal-lysosomal fusion";"EGFR downregulation";"Ub-specific processing proteases";"Inhibition of membrane repair";"Lysosome Vesicle Biogenesis";"InlB-mediated entry of Listeria monocytogenes into host cell";"Negative regulation of MET activity";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis"
JAMg_model_18117.7	12	KEGG: 00380+2.6.1.7;MetaCyc: PWY-601;MetaCyc: PWY-6309;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6936;MetaCyc: PWY-1187;KEGG: 00270+4.4.1.13;MetaCyc: PWY-801;Reactome: R-HSA-71240;MetaCyc: PWY-7901;MetaCyc: PWY-2821;MetaCyc: PWY-6842	"Tryptophan metabolism";"Glucosinolate biosynthesis from tryptophan";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Selenocompound metabolism";"Seleno-amino acid biosynthesis (plants)";"Glucosinolate biosynthesis from homomethionine";"Cysteine and methionine metabolism";"Homocysteine and cysteine interconversion";"Tryptophan catabolism";"Glucosinolate biosynthesis from tyrosine";"Glucosinolate biosynthesis from phenylalanine";"Glutathione-mediated detoxification II"
JAMg_model_18135.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_6079.1	1	Reactome: R-HSA-197264	"Nicotinamide salvaging"
JAMg_model_5587.8	2	Reactome: R-HSA-6807878;Reactome: R-HSA-445095	"COPI-mediated anterograde transport";"Interaction between L1 and Ankyrins"
JAMg_model_1818.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_6808.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_14477.1	15	Reactome: R-HSA-179409;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-174084;Reactome: R-HSA-174184;Reactome: R-HSA-176409;Reactome: R-HSA-174154;Reactome: R-HSA-176412;Reactome: R-HSA-176408;Reactome: R-HSA-69017;Reactome: R-HSA-2467813;Reactome: R-HSA-174178;Reactome: R-HSA-2559582;Reactome: R-HSA-8853884;Reactome: R-HSA-141430	"APC-Cdc20 mediated degradation of Nek2A";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"Autodegradation of Cdh1 by Cdh1:APC/C";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of mitotic proteins";"APC/C:Cdc20 mediated degradation of Securin";"Phosphorylation of the APC/C";"Regulation of APC/C activators between G1/S and early anaphase";"CDK-mediated phosphorylation and removal of Cdc6";"Separation of Sister Chromatids";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Senescence-Associated Secretory Phenotype (SASP)";"Transcriptional Regulation by VENTX";"Inactivation of APC/C via direct inhibition of the APC/C complex"
JAMg_model_11252.3	9	MetaCyc: PWY-7385;MetaCyc: PWY-7411;Reactome: R-HSA-1483166;KEGG: 00564+1.1.1.8;KEGG: 00564+1.1.1.94;MetaCyc: PWY-7902;MetaCyc: PWY-5667;MetaCyc: PWY-5981;MetaCyc: PWY-6118	"1,3-propanediol biosynthesis (engineered)";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"Glucosylglycerol biosynthesis";"CDP-diacylglycerol biosynthesis I";"CDP-diacylglycerol biosynthesis III";"Glycerol-3-phosphate shuttle"
JAMg_model_16984.3	14	Reactome: R-HSA-5696397;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-6782210;Reactome: R-HSA-69091;Reactome: R-HSA-6782135;Reactome: R-HSA-5655862;Reactome: R-HSA-110320;Reactome: R-HSA-110314;Reactome: R-HSA-5656169;Reactome: R-HSA-174411;Reactome: R-HSA-5685942;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Polymerase switching";"Dual incision in TC-NER";"Translesion synthesis by POLK";"Translesion Synthesis by POLH";"Recognition of DNA damage by PCNA-containing replication complex";"Termination of translesion DNA synthesis";"Polymerase switching on the C-strand of the telomere";"HDR through Homologous Recombination (HRR)";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair"
JAMg_model_11820.2	5	Reactome: R-HSA-389957;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-6814122;Reactome: R-HSA-389960	"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Formation of tubulin folding intermediates by CCT/TriC"
JAMg_model_551.4	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_21130.4	6	Reactome: R-HSA-9033241;Reactome: R-HSA-9615017;KEGG: 00630+1.11.1.6;Reactome: R-HSA-6798695;Reactome: R-HSA-3299685;KEGG: 00380+1.11.1.6	"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Glyoxylate and dicarboxylate metabolism";"Neutrophil degranulation";"Detoxification of Reactive Oxygen Species";"Tryptophan metabolism"
JAMg_model_5069.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_10021.1	4	KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;KEGG: 00053+1.13.99.1;Reactome: R-HSA-1855183	"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Ascorbate and aldarate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol"
JAMg_model_5574.4	2	Reactome: R-HSA-4641265;Reactome: R-HSA-5339700	"Repression of WNT target genes";"TCF7L2 mutants don't bind CTBP"
JAMg_model_998.1	2	Reactome: R-HSA-6782315;MetaCyc: PWY-6829	"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)"
JAMg_model_10754.3	3	Reactome: R-HSA-4420097;Reactome: R-HSA-391160;KEGG: 04660+2.7.10.2	"VEGFA-VEGFR2 Pathway";"Signal regulatory protein family interactions";"T cell receptor signaling pathway"
JAMg_model_4597.1	5	Reactome: R-HSA-1442490;Reactome: R-HSA-1679131;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695;Reactome: R-HSA-2022090	"Collagen degradation";"Trafficking and processing of endosomal TLR";"MHC class II antigen presentation";"Neutrophil degranulation";"Assembly of collagen fibrils and other multimeric structures"
JAMg_model_907.10	8	Reactome: R-HSA-5140745;Reactome: R-HSA-5099900;Reactome: R-HSA-3928665;Reactome: R-HSA-432720;Reactome: R-HSA-190873;Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4";"EPH-ephrin mediated repulsion of cells";"Lysosome Vesicle Biogenesis";"Gap junction degradation";"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_3981.1	2	KEGG: 00627+3.6.1.7;KEGG: 00620+3.6.1.7	"Aminobenzoate degradation";"Pyruvate metabolism"
JAMg_model_4336.4	34	Reactome: R-HSA-68877;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9639288;Reactome: R-HSA-159236;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-170822;Reactome: R-HSA-168333;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-1169408;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813;Reactome: R-HSA-4551638;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-159227;Reactome: R-HSA-168276	"Mitotic Prometaphase";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Transcriptional regulation by small RNAs";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"Amino acids regulate mTORC1";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"ISG15 antiviral mechanism";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids";"SUMOylation of chromatin organization proteins";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"Transport of the SLBP independent Mature mRNA";"NS1 Mediated Effects on Host Pathways"
JAMg_model_20279.1	4	MetaCyc: PWY-5028;KEGG: 00340+3.5.2.7;MetaCyc: PWY-5030;Reactome: R-HSA-70921	"L-histidine degradation II";"Histidine metabolism";"L-histidine degradation III";"Histidine catabolism"
JAMg_model_10696.1	57	Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-4641258;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408	"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Degradation of DVL";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA"
JAMg_model_17488.2	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_13997.1	1	Reactome: R-HSA-380320	"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_7648.1	2	Reactome: R-HSA-877300;Reactome: R-HSA-2132295	"Interferon gamma signaling";"MHC class II antigen presentation"
JAMg_model_12446.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_19822.3	19	MetaCyc: PWY-6728;KEGG: 00680+1.1.1.37;KEGG: 00620+1.1.1.37;MetaCyc: PWY-7115;KEGG: 00630+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-5392;KEGG: 00020+1.1.1.37;MetaCyc: PWY-561;MetaCyc: PWY-7383;Reactome: R-HSA-70263;MetaCyc: PWY-5690;KEGG: 00710+1.1.1.37;MetaCyc: PWY-1622;Reactome: R-HSA-71403;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00270+1.1.1.37;KEGG: 00720+1.1.1.37	"Methylaspartate cycle";"Methane metabolism";"Pyruvate metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Glyoxylate and dicarboxylate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Reductive TCA cycle II";"Citrate cycle (TCA cycle)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Anaerobic energy metabolism (invertebrates, cytosol)";"Gluconeogenesis";"TCA cycle II (plants and fungi)";"Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation I (serine pathway)";"Citric acid cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism";"Carbon fixation pathways in prokaryotes"
JAMg_model_14663.2	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_21109.1	2	Reactome: R-HSA-975577;Reactome: R-HSA-2022854	"N-Glycan antennae elongation";"Keratan sulfate biosynthesis"
JAMg_model_3194.1	3	MetaCyc: PWY-6482;Reactome: R-HSA-5358493;MetaCyc: PWY-7546	"Diphthamide biosynthesis I (archaea)";"Synthesis of diphthamide-EEF2";"Diphthamide biosynthesis II (eukaryotes)"
JAMg_model_9706.1	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_8159.9	12	MetaCyc: PWY-5484;MetaCyc: PWY-1042;Reactome: R-HSA-70263;KEGG: 00010+4.1.2.13;KEGG: 00680+4.1.2.13;KEGG: 00710+4.1.2.13;KEGG: 00030+4.1.2.13;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385;Reactome: R-HSA-70171;MetaCyc: PWY-6142;MetaCyc: PWY-1861	"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Methane metabolism";"Carbon fixation in photosynthetic organisms";"Pentose phosphate pathway";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)"
JAMg_model_5560.1	2	MetaCyc: PWY-7560;KEGG: 00900+2.7.7.60	"Methylerythritol phosphate pathway II";"Terpenoid backbone biosynthesis"
JAMg_model_9176.1	3	Reactome: R-HSA-9033807;MetaCyc: PWY-7833;MetaCyc: PWY-7831	"ABO blood group biosynthesis";"Biosynthesis of Lewis epitopes (H. pylori)";"ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide"
JAMg_model_1772.1	2	KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_16579.3	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_625.1	1	Reactome: R-HSA-1221632	"Meiotic synapsis"
JAMg_model_3870.3	2	Reactome: R-HSA-3065676;Reactome: R-HSA-3065678	"SUMO is conjugated to E1 (UBA2:SAE1)";"SUMO is transferred from E1 to E2 (UBE2I, UBC9)"
JAMg_model_9527.1	2	Reactome: R-HSA-1482798;Reactome: R-HSA-1268020	"Acyl chain remodeling of CL";"Mitochondrial protein import"
JAMg_model_703.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_8303.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_19084.1	5	Reactome: R-HSA-73856;Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-77595;Reactome: R-HSA-159231	"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"Processing of Intronless Pre-mRNAs";"Transport of Mature mRNA Derived from an Intronless Transcript"
JAMg_model_7182.2	1	Reactome: R-HSA-389977	"Post-chaperonin tubulin folding pathway"
JAMg_model_9717.1	4	Reactome: R-HSA-162699;Reactome: R-HSA-4719377;Reactome: R-HSA-4717374;Reactome: R-HSA-4719360	"Synthesis of dolichyl-phosphate mannose";"Defective DPM2 causes DPM2-CDG (CDG-1u)";"Defective DPM1 causes DPM1-CDG (CDG-1e)";"Defective DPM3 causes DPM3-CDG (CDG-1o)"
JAMg_model_1458.1	21	MetaCyc: PWY-7222;MetaCyc: PWY-7224;MetaCyc: PWY-7176;MetaCyc: PWY-7227;MetaCyc: PWY-7187;MetaCyc: PWY-7221;KEGG: 00230+2.7.4.3;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7219;MetaCyc: PWY-7205;MetaCyc: PWY-7184;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7197;MetaCyc: PWY-7226;KEGG: 00230+2.7.4.6+2.7.4.3;MetaCyc: PWY-7220;MetaCyc: PWY-7198;KEGG: 00240+2.7.4.6;KEGG: 00730+2.7.4.3;MetaCyc: PWY-7210	"Guanosine deoxyribonucleotides de novo biosynthesis II";"Purine deoxyribonucleosides salvage";"UTP and CTP de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"Adenosine ribonucleotides de novo biosynthesis";"CMP phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotide phosphorylation";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine metabolism";"Thiamine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP"
JAMg_model_5070.2	17	MetaCyc: PWY-7179-1;KEGG: 00240+2.4.2.1;MetaCyc: PWY-6611;MetaCyc: PWY-6644;MetaCyc: PWY-7179;Reactome: R-HSA-74259;MetaCyc: PWY-5695;MetaCyc: PWY-6608;MetaCyc: PWY-6627;KEGG: 00760+2.4.2.1;KEGG: 00230+2.4.2.1;Reactome: R-HSA-6798695;Reactome: R-HSA-74217;MetaCyc: PWY-5532;MetaCyc: PWY-6620;MetaCyc: PWY-4202;MetaCyc: PWY-6609	"Purine deoxyribonucleosides degradation II";"Pyrimidine metabolism";"Adenine and adenosine salvage V";"Fluoroacetate and fluorothreonine biosynthesis";"Purine deoxyribonucleosides degradation I";"Purine catabolism";"Inosine 5'-phosphate degradation";"Guanosine nucleotides degradation III";"Salinosporamide A biosynthesis";"Nicotinate and nicotinamide metabolism";"Purine metabolism";"Neutrophil degranulation";"Purine salvage";"Nucleoside and nucleotide degradation (archaea)";"Guanine and guanosine salvage";"Arsenate detoxification I (mammalian)";"Adenine and adenosine salvage III"
JAMg_model_628.3	6	MetaCyc: PWY-5530;KEGG: 00053+3.1.1.17;KEGG: 00930+3.1.1.17;MetaCyc: PWY-2221;KEGG: 00030+3.1.1.17;MetaCyc: PWY-7165	"Sorbitol biosynthesis II";"Ascorbate and aldarate metabolism";"Caprolactam degradation";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Pentose phosphate pathway";"L-ascorbate biosynthesis VI (engineered pathway)"
JAMg_model_15147.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_2389.1	1	Reactome: R-HSA-3238698	"WNT ligand biogenesis and trafficking"
JAMg_model_18603.1	11	KEGG: 00240+3.1.3.5;KEGG: 00230+3.1.3.5;MetaCyc: PWY-6607;MetaCyc: PWY-5381;MetaCyc: PWY-6608;MetaCyc: PWY-7821;MetaCyc: PWY-5695;MetaCyc: PWY-6606;MetaCyc: PWY-6596;KEGG: 00760+3.1.3.5;MetaCyc: PWY-7185	"Pyrimidine metabolism";"Purine metabolism";"Guanosine nucleotides degradation I";"Pyridine nucleotide cycling (plants)";"Guanosine nucleotides degradation III";"Tunicamycin biosynthesis";"Inosine 5'-phosphate degradation";"Guanosine nucleotides degradation II";"Adenosine nucleotides degradation I";"Nicotinate and nicotinamide metabolism";"UTP and CTP dephosphorylation I"
JAMg_model_19742.1	3	Reactome: R-HSA-6798695;Reactome: R-HSA-1660661;Reactome: R-HSA-9609523	"Neutrophil degranulation";"Sphingolipid de novo biosynthesis";"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_3001.1	52	Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-174154;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9010553;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-4641257	"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"APC/C:Cdc20 mediated degradation of Securin";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Orc1 removal from chromatin";"Interleukin-1 signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Regulation of expression of SLITs and ROBOs";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Degradation of AXIN"
JAMg_model_4497.1	5	Reactome: R-HSA-73863;Reactome: R-HSA-73762;Reactome: R-HSA-73772;Reactome: R-HSA-427413;Reactome: R-HSA-5250924	"RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation";"RNA Polymerase I Promoter Escape";"NoRC negatively regulates rRNA expression";"B-WICH complex positively regulates rRNA expression"
JAMg_model_2588.2	2	Reactome: R-HSA-8949215;Reactome: R-HSA-8949664	"Mitochondrial calcium ion transport";"Processing of SMDT1"
JAMg_model_750.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_8298.10	4	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-1912420	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Pre-NOTCH Processing in Golgi"
JAMg_model_639.2	24	Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Kinesins";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion"
JAMg_model_11657.4	2	Reactome: R-HSA-1169408;Reactome: R-HSA-168276	"ISG15 antiviral mechanism";"NS1 Mediated Effects on Host Pathways"
JAMg_model_11904.2	2	MetaCyc: PWY-5386;KEGG: 00620+3.1.2.6	"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_19531.1	9	MetaCyc: PWY-7769;MetaCyc: PWY-8067;MetaCyc: PWY-6322;KEGG: 00998+4.1.1.82;MetaCyc: PWY-6839;MetaCyc: PWY-6682;MetaCyc: PWY-7510;KEGG: 00440+4.1.1.82;MetaCyc: PWY-5757	"Phosalacine biosynthesis";"Methylphosphonate biosynthesis";"Phosphinothricin tripeptide biosynthesis";"Biosynthesis of various secondary metabolites - part 2";"2-aminoethylphosphonate biosynthesis";"Dehydrophos biosynthesis";"Rhizocticin A and B biosynthesis";"Phosphonate and phosphinate metabolism";"Fosfomycin biosynthesis"
JAMg_model_4356.1	3	KEGG: 00510+2.4.1.265;Reactome: R-HSA-4724325;Reactome: R-HSA-446193	"N-Glycan biosynthesis";"Defective ALG8 causes ALG8-CDG (CDG-1h)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein"
JAMg_model_5839.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_3742.1	8	MetaCyc: PWY-5;MetaCyc: PWY-5154;MetaCyc: PWY-7400;KEGG: 00220+6.3.4.5;MetaCyc: PWY-4983;Reactome: R-HSA-70635;MetaCyc: PWY-4984;KEGG: 00250+6.3.4.5	"Canavanine biosynthesis";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"L-arginine biosynthesis IV (archaebacteria)";"Arginine biosynthesis";"Nitric oxide biosynthesis II (mammals)";"Urea cycle";"Urea cycle";"Alanine, aspartate and glutamate metabolism"
JAMg_model_4874.3	1	Reactome: R-HSA-8873719	"RAB geranylgeranylation"
JAMg_model_596.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_13339.3	1	Reactome: R-HSA-388844	"Receptor-type tyrosine-protein phosphatases"
JAMg_model_8210.2	6	Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72702	"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition"
JAMg_model_7069.2	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_19013.2	7	Reactome: R-HSA-2644606;Reactome: R-HSA-2691232;Reactome: R-HSA-2122948;Reactome: R-HSA-9013507;Reactome: R-HSA-2979096;Reactome: R-HSA-2894862;MetaCyc: PWY-7511	"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Protein ubiquitination"
JAMg_model_15154.4	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_451.1	4	Reactome: R-HSA-69656;Reactome: R-HSA-1362277;Reactome: R-HSA-8953750;Reactome: R-HSA-69202	"Cyclin A:Cdk2-associated events at S phase entry";"Transcription of E2F targets under negative control by DREAM complex";"Transcriptional Regulation by E2F6";"Cyclin E associated events during G1/S transition"
JAMg_model_10566.1	3	Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837	"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases"
JAMg_model_9236.3	1	Reactome: R-HSA-352230	"Amino acid transport across the plasma membrane"
JAMg_model_4582.2	7	MetaCyc: PWY-6074;Reactome: R-HSA-191273;KEGG: 00100+1.3.1.70;Reactome: R-HSA-9022692;MetaCyc: PWY-8026;MetaCyc: PWY-2541;MetaCyc: PWY-7154	"Zymosterol biosynthesis";"Cholesterol biosynthesis";"Steroid biosynthesis";"Regulation of MECP2 expression and activity";"Sterol biosynthesis (methylotrophs)";"Phytosterol biosynthesis (plants)";"Ergosterol biosynthesis II"
JAMg_model_410.1	2	KEGG: 00627+3.6.1.7;KEGG: 00620+3.6.1.7	"Aminobenzoate degradation";"Pyruvate metabolism"
JAMg_model_11562.1	2	Reactome: R-HSA-203927;Reactome: R-HSA-426486	"MicroRNA (miRNA) biogenesis";"Small interfering RNA (siRNA) biogenesis"
JAMg_model_2521.1	8	Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-68952;Reactome: R-HSA-174411;Reactome: R-HSA-174430;Reactome: R-HSA-69183;Reactome: R-HSA-113501;Reactome: R-HSA-68962	"Removal of the Flap Intermediate";"Polymerase switching";"DNA replication initiation";"Polymerase switching on the C-strand of the telomere";"Telomere C-strand synthesis initiation";"Processive synthesis on the lagging strand";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Activation of the pre-replicative complex"
JAMg_model_18625.1	1	Reactome: R-HSA-8953750	"Transcriptional Regulation by E2F6"
JAMg_model_8702.2	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_17588.1	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_14872.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_6484.2	10	Reactome: R-HSA-6804756;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693568;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554	"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Resolution of D-loop Structures through Holliday Junction Intermediates";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_11034.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_5069.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_12749.4	12	Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-2132295;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-9609690;Reactome: R-HSA-68877	"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"MHC class II antigen presentation";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"HCMV Early Events";"Mitotic Prometaphase"
JAMg_model_6075.2	24	Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-983189;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609690;Reactome: R-HSA-68877	"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"Kinesins";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"HCMV Early Events";"Mitotic Prometaphase"
JAMg_model_1618.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_10721.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_16966.1	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_7863.1	13	Reactome: R-HSA-71403;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5537;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-6728;MetaCyc: PWY-7384;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5538	"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Pyruvate fermentation to acetate V";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Reductive TCA cycle II";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate VI"
JAMg_model_8637.5	4	Reactome: R-HSA-446193;KEGG: 00510+2.4.1.259+2.4.1.261;KEGG: 00513+2.4.1.261;Reactome: R-HSA-4720454	"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"N-Glycan biosynthesis";"Various types of N-glycan biosynthesis";"Defective ALG9 causes ALG9-CDG (CDG-1l)"
JAMg_model_16624.4	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_13456.3	2	Reactome: R-HSA-442982;Reactome: R-HSA-5673001	"Ras activation upon Ca2+ influx through NMDA receptor";"RAF/MAP kinase cascade"
JAMg_model_18278.1	4	Reactome: R-HSA-3899300;Reactome: R-HSA-9615710;Reactome: R-HSA-9613829;Reactome: R-HSA-9646399	"SUMOylation of transcription cofactors";"Late endosomal microautophagy";"Chaperone Mediated Autophagy";"Aggrephagy"
JAMg_model_16858.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_20806.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_9186.5	6	MetaCyc: PWY-7817;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism"
JAMg_model_13997.2	1	Reactome: R-HSA-380320	"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_14776.5	2	Reactome: R-HSA-909733;Reactome: R-HSA-8983711	"Interferon alpha/beta signaling";"OAS antiviral response"
JAMg_model_19174.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_10892.3	3	KEGG: 00790+3.1.3.1;KEGG: 00730+3.1.3.1;MetaCyc: PWY-5491	"Folate biosynthesis";"Thiamine metabolism";"Diethylphosphate degradation"
JAMg_model_6044.1	7	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"Thermogenesis";"Human papillomavirus infection"
JAMg_model_5653.1	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_1639.3	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_11252.5	9	MetaCyc: PWY-6118;MetaCyc: PWY-5981;MetaCyc: PWY-5667;MetaCyc: PWY-7902;KEGG: 00564+1.1.1.8;KEGG: 00564+1.1.1.94;MetaCyc: PWY-7385;MetaCyc: PWY-7411;Reactome: R-HSA-1483166	"Glycerol-3-phosphate shuttle";"CDP-diacylglycerol biosynthesis III";"CDP-diacylglycerol biosynthesis I";"Glucosylglycerol biosynthesis";"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"1,3-propanediol biosynthesis (engineered)";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA"
JAMg_model_11411.2	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_13381.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_19852.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_7883.2	1	Reactome: R-HSA-2565942	"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_3663.3	5	KEGG: 00983+2.7.1.21;Reactome: R-HSA-73614;Reactome: R-HSA-69205;MetaCyc: PWY-7199;KEGG: 00240+2.7.1.21	"Drug metabolism - other enzymes";"Pyrimidine salvage";"G1/S-Specific Transcription";"Pyrimidine deoxyribonucleosides salvage";"Pyrimidine metabolism"
JAMg_model_460.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_18048.8	5	KEGG: 00520+3.5.99.6;MetaCyc: PWY-6855;MetaCyc: PWY-5514;Reactome: R-HSA-70171;MetaCyc: PWY-6906	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Glycolysis";"Chitin derivatives degradation"
JAMg_model_1693.1	1	Reactome: R-HSA-1237044	"Erythrocytes take up carbon dioxide and release oxygen"
JAMg_model_8211.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_15095.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_3074.2	2	Reactome: R-HSA-8873719;Reactome: R-HSA-6803205	"RAB geranylgeranylation";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain"
JAMg_model_3198.4	1	Reactome: R-HSA-1483191	"Synthesis of PC"
JAMg_model_10417.4	1	Reactome: R-HSA-2470946	"Cohesin Loading onto Chromatin"
JAMg_model_11705.4	6	Reactome: R-HSA-73817;KEGG: 00230+4.1.1.21;MetaCyc: PWY-7234;MetaCyc: PWY-6124;MetaCyc: PWY-6123;KEGG: 00230+6.3.2.6	"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Inosine-5'-phosphate biosynthesis III";"Inosine-5'-phosphate biosynthesis II";"Inosine-5'-phosphate biosynthesis I";"Purine metabolism"
JAMg_model_15765.1	2	Reactome: R-HSA-163210;Reactome: R-HSA-8949613	"Formation of ATP by chemiosmotic coupling";"Cristae formation"
JAMg_model_8827.1	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_19183.1	5	KEGG: 00790+1.5.1.3;Reactome: R-HSA-196757;KEGG: 00670+1.5.1.3;MetaCyc: PWY-3841;MetaCyc: PWY-6614	"Folate biosynthesis";"Metabolism of folate and pterines";"One carbon pool by folate";"Folate transformations II (plants)";"Tetrahydrofolate biosynthesis"
JAMg_model_17409.1	5	MetaCyc: PWY-6902;MetaCyc: PWY-7822;Reactome: R-HSA-189085;MetaCyc: PWY-6855;KEGG: 00520+3.2.1.14	"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Digestion of dietary carbohydrate";"Chitin degradation I (archaea)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_12555.1	1	Reactome: R-HSA-420499	"Class C/3 (Metabotropic glutamate/pheromone receptors)"
JAMg_model_10993.1	3	Reactome: R-HSA-2142691;MetaCyc: PWY-7533;Reactome: R-HSA-5423646	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification"
JAMg_model_4987.3	29	Reactome: R-HSA-912446;Reactome: R-HSA-3371511;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-3371453;Reactome: R-HSA-6804756;Reactome: R-HSA-110314;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-5655862;Reactome: R-HSA-6783310;Reactome: R-HSA-6782135;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5358606;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-69166	"Meiotic recombination";"HSF1 activation";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Regulation of HSF1-mediated heat shock response";"Regulation of TP53 Activity through Phosphorylation";"Recognition of DNA damage by PCNA-containing replication complex";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Translesion synthesis by POLK";"Fanconi Anemia Pathway";"Dual incision in TC-NER";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"Removal of the Flap Intermediate"
JAMg_model_16891.2	1	Reactome: R-HSA-74217	"Purine salvage"
JAMg_model_10417.2	1	Reactome: R-HSA-2470946	"Cohesin Loading onto Chromatin"
JAMg_model_8897.2	3	Reactome: R-HSA-1268020;Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Mitochondrial protein import";"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_20738.5	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_361.8	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_13054.2	3	KEGG: 00270+5.3.1.23;MetaCyc: PWY-4361;MetaCyc: PWY-7174	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II"
JAMg_model_12752.2	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_18327.1	2	Reactome: R-HSA-445355;Reactome: R-HSA-390522	"Smooth Muscle Contraction";"Striated Muscle Contraction"
JAMg_model_20404.3	10	MetaCyc: PWY-7003;Reactome: R-HSA-70171;MetaCyc: PWY-6142;KEGG: 00051+5.3.1.1;MetaCyc: PWY-1042;KEGG: 00710+5.3.1.1;KEGG: 00562+5.3.1.1;MetaCyc: PWY-5484;Reactome: R-HSA-70263;KEGG: 00010+5.3.1.1	"Glycerol degradation to butanol";"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Fructose and mannose metabolism";"Glycolysis IV (plant cytosol)";"Carbon fixation in photosynthetic organisms";"Inositol phosphate metabolism";"Glycolysis II (from fructose 6-phosphate)";"Gluconeogenesis";"Glycolysis / Gluconeogenesis"
JAMg_model_4522.1	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_13624.1	4	Reactome: R-HSA-8856825;Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-5696394	"Cargo recognition for clathrin-mediated endocytosis";"Formation of TC-NER Pre-Incision Complex";"Neddylation";"DNA Damage Recognition in GG-NER"
JAMg_model_16085.1	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_1372.1	9	Reactome: R-HSA-2022928;Reactome: R-HSA-2024096;Reactome: R-HSA-975634;Reactome: R-HSA-1971475;Reactome: R-HSA-3560783;Reactome: R-HSA-3656237;Reactome: R-HSA-4420332;Reactome: R-HSA-3656253;Reactome: R-HSA-3560801	"HS-GAG biosynthesis";"HS-GAG degradation";"Retinoid metabolism and transport";"A tetrasaccharide linker sequence is required for GAG synthesis";"Defective B4GALT7 causes EDS, progeroid type";"Defective EXT2 causes exostoses 2";"Defective B3GALT6 causes EDSP2 and SEMDJL1";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"Defective B3GAT3 causes JDSSDHD"
JAMg_model_715.1	1	Reactome: R-HSA-8854691	"Interleukin-20 family signaling"
JAMg_model_957.5	4	Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-5625970;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"RHO GTPases activate KTN1";"Kinesins"
JAMg_model_13756.1	7	Reactome: R-HSA-2122947;Reactome: R-HSA-2894862;Reactome: R-HSA-212436;Reactome: R-HSA-2173796;Reactome: R-HSA-1989781;Reactome: R-HSA-2644606;Reactome: R-HSA-381340	"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Generic Transcription Pathway";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"PPARA activates gene expression";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_1696.2	9	Reactome: R-HSA-68952;Reactome: R-HSA-69091;Reactome: R-HSA-69166;Reactome: R-HSA-174430;Reactome: R-HSA-174411;Reactome: R-HSA-68962;Reactome: R-HSA-113501;Reactome: R-HSA-69205;Reactome: R-HSA-69183	"DNA replication initiation";"Polymerase switching";"Removal of the Flap Intermediate";"Telomere C-strand synthesis initiation";"Polymerase switching on the C-strand of the telomere";"Activation of the pre-replicative complex";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"G1/S-Specific Transcription";"Processive synthesis on the lagging strand"
JAMg_model_19749.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_17734.5	5	KEGG: 00860+4.2.1.24;MetaCyc: PWY-5188;Reactome: R-HSA-6798695;MetaCyc: PWY-5189;Reactome: R-HSA-189451	"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)";"Neutrophil degranulation";"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis"
JAMg_model_16788.1	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_12219.2	5	Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-5689901;Reactome: R-HSA-5693571;Reactome: R-HSA-5693565	"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Metalloprotease DUBs";"Nonhomologous End-Joining (NHEJ)";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_11506.1	1	Reactome: R-HSA-5624138	"Trafficking of myristoylated proteins to the cilium"
JAMg_model_20430.2	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_5849.1	14	KEGG: 00062+2.3.1.199;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-7035;MetaCyc: PWY-5972;MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-5080;MetaCyc: PWY-7725;MetaCyc: PWY-7602;MetaCyc: PWY-6433	"Fatty acid elongation";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)"
JAMg_model_6042.3	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_4213.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_7424.1	1	Reactome: R-HSA-6811434	"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_11904.6	2	MetaCyc: PWY-5386;KEGG: 00620+3.1.2.6	"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_3438.6	3	Reactome: R-HSA-2129379;Reactome: R-HSA-1566948;Reactome: R-HSA-1474228	"Molecules associated with elastic fibres";"Elastic fibre formation";"Degradation of the extracellular matrix"
JAMg_model_10124.7	6	Reactome: R-HSA-71403;KEGG: 00290+4.2.1.33;KEGG: 00020+4.2.1.3;KEGG: 00720+4.2.1.3;Reactome: R-HSA-1268020;KEGG: 00630+4.2.1.3	"Citric acid cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis";"Citrate cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Mitochondrial protein import";"Glyoxylate and dicarboxylate metabolism"
JAMg_model_6699.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19162.3	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_19028.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_13194.1	4	Reactome: R-HSA-70895;MetaCyc: PWY-5642;KEGG: 00640+1.2.1.27;KEGG: 00280+1.2.1.27	"Branched-chain amino acid catabolism";"2,4-dinitrotoluene degradation";"Propanoate metabolism";"Valine, leucine and isoleucine degradation"
JAMg_model_5112.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15216.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_13244.4	7	KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2;Reactome: R-HSA-8964539;KEGG: 00250+3.5.1.2;Reactome: R-HSA-5628897;Reactome: R-HSA-210500;MetaCyc: PWY-5921	"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism";"Glutamate and glutamine metabolism";"Alanine, aspartate and glutamate metabolism";"TP53 Regulates Metabolic Genes";"Glutamate Neurotransmitter Release Cycle";"Glutaminyl-trnagln biosynthesis via transamidation"
JAMg_model_2053.3	2	KEGG: 00030+1.1.1.47;Reactome: R-HSA-71384	"Pentose phosphate pathway";"Ethanol oxidation"
JAMg_model_1137.1	10	MetaCyc: PWY-8001;MetaCyc: PWY-5826;KEGG: 00430+2.3.2.2;KEGG: 00480+2.3.2.2+3.4.19.13;KEGG: 00460+2.3.2.2;MetaCyc: PWY-4061;MetaCyc: PWY-6842;MetaCyc: PWY-7559;MetaCyc: PWY-4041;MetaCyc: PWY-7112	"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Hypoglycin biosynthesis";"Taurine and hypotaurine metabolism";"Glutathione metabolism";"Cyanoamino acid metabolism";"Glutathione-mediated detoxification I";"Glutathione-mediated detoxification II";"Glutathione degradation (DUG pathway";"Gamma-glutamyl cycle";"4-hydroxy-2-nonenal detoxification"
JAMg_model_9797.7	14	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-191273;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Cholesterol biosynthesis";"Peptide chain elongation"
JAMg_model_17319.1	3	Reactome: R-HSA-72187;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_8815.1	7	MetaCyc: PWY-5469;MetaCyc: PWY-6824;MetaCyc: PWY-5466;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-7445;KEGG: 00940+1.11.1.7	"Sesamin biosynthesis";"Justicidin B biosynthesis";"Matairesinol biosynthesis";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation";"Phenylpropanoid biosynthesis"
JAMg_model_12508.5	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_10500.2	5	Reactome: R-HSA-72163;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-6781823	"mRNA Splicing - Major Pathway";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_21305.1	14	KEGG: 00630+2.1.2.1;KEGG: 00680+2.1.2.1;KEGG: 00460+2.1.2.1;MetaCyc: PWY-3841;Reactome: R-HSA-196757;MetaCyc: PWY-181;MetaCyc: PWY-3661;MetaCyc: PWY-3661-1;MetaCyc: PWY-2161;KEGG: 00260+2.1.2.1;KEGG: 00670+2.1.2.1;MetaCyc: PWY-5497;MetaCyc: PWY-1622;MetaCyc: PWY-2201	"Glyoxylate and dicarboxylate metabolism";"Methane metabolism";"Cyanoamino acid metabolism";"Folate transformations II (plants)";"Metabolism of folate and pterines";"Photorespiration ";"Glycine betaine degradation I";"Glycine betaine degradation II (mammalian)";"Folate polyglutamylation";"Glycine, serine and threonine metabolism";"One carbon pool by folate";"Purine nucleobases degradation II (anaerobic)";"Formaldehyde assimilation I (serine pathway)";"Folate transformations I"
JAMg_model_6409.2	2	Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_6589.3	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_17165.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_7576.3	2	KEGG: 00500+3.2.1.28;Reactome: R-HSA-189085	"Starch and sucrose metabolism";"Digestion of dietary carbohydrate"
JAMg_model_6735.1	2	Reactome: R-HSA-3108214;MetaCyc: PWY-7511	"SUMOylation of DNA damage response and repair proteins";"Protein ubiquitination"
JAMg_model_907.4	8	Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-5099900;Reactome: R-HSA-432720;Reactome: R-HSA-190873;Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4";"Lysosome Vesicle Biogenesis";"Gap junction degradation";"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_3075.2	52	Reactome: R-HSA-73762;Reactome: R-HSA-76066;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-76071;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-6782135;Reactome: R-HSA-73772;Reactome: R-HSA-73776;Reactome: R-HSA-73980;Reactome: R-HSA-1834949;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-5601884;Reactome: R-HSA-72203;Reactome: R-HSA-5250924;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-76061;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-9018519;Reactome: R-HSA-73780;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-203927;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-6807505;Reactome: R-HSA-6781827;Reactome: R-HSA-168325;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-5578749;Reactome: R-HSA-749476;Reactome: R-HSA-72163;Reactome: R-HSA-73863;Reactome: R-HSA-6781823;Reactome: R-HSA-167238;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-8851708;Reactome: R-HSA-5617472;Reactome: R-HSA-167172;Reactome: R-HSA-167246;Reactome: R-HSA-72165	"RNA Polymerase I Transcription Initiation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"Dual incision in TC-NER";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Promoter Escape";"RNA Polymerase III Transcription Termination";"Cytosolic sensors of pathogen-associated DNA";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"PIWI-interacting RNA (piRNA) biogenesis";"Processing of Capped Intron-Containing Pre-mRNA";"B-WICH complex positively regulates rRNA expression";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Estrogen-dependent gene expression";"RNA Polymerase III Chain Elongation";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"MicroRNA (miRNA) biogenesis";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"RNA polymerase II transcribes snRNA genes";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Viral Messenger RNA Synthesis";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"Transcriptional regulation by small RNAs";"RNA Polymerase III Abortive And Retractive Initiation";"mRNA Splicing - Major Pathway";"RNA Polymerase I Transcription Termination";"Formation of TC-NER Pre-Incision Complex";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"Signaling by FGFR2 IIIa TM";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcription of the HIV genome";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway"
JAMg_model_13632.1	7	Reactome: R-HSA-76071;Reactome: R-HSA-73980;Reactome: R-HSA-749476;Reactome: R-HSA-1834949;Reactome: R-HSA-76061;Reactome: R-HSA-73780;Reactome: R-HSA-76066	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_1600.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_16828.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_17189.2	2	Reactome: R-HSA-418594;Reactome: R-HSA-6814122	"G alpha (i) signalling events";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_19918.1	1	Reactome: R-HSA-5627083	"RHO GTPases regulate CFTR trafficking"
JAMg_model_13583.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19368.1	1	Reactome: R-HSA-5389840	"Mitochondrial translation elongation"
JAMg_model_20787.3	32	Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-77075;Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-73776;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-9018519;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-75955;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-72203;Reactome: R-HSA-76042;Reactome: R-HSA-6803529	"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Estrogen-dependent gene expression";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing"
JAMg_model_19631.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11565.1	4	Reactome: R-HSA-2132295;Reactome: R-HSA-6798695;Reactome: R-HSA-204005;Reactome: R-HSA-5694530	"MHC class II antigen presentation";"Neutrophil degranulation";"COPII-mediated vesicle transport";"Cargo concentration in the ER"
JAMg_model_8910.7	2	Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_15064.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_11259.1	1	Reactome: R-HSA-110320	"Translesion Synthesis by POLH"
JAMg_model_3198.1	1	Reactome: R-HSA-1483191	"Synthesis of PC"
JAMg_model_3366.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-8869496	"rRNA modification in the nucleus and cytosol";"TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation"
JAMg_model_20280.1	2	Reactome: R-HSA-6804756;Reactome: R-HSA-8854518	"Regulation of TP53 Activity through Phosphorylation";"AURKA Activation by TPX2"
JAMg_model_4474.1	6	MetaCyc: PWY-6807;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23	"Xyloglucan degradation II (exoglucanase)";"Other glycan degradation";"Galactose metabolism";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism"
JAMg_model_359.4	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_10744.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_2014.2	5	KEGG: 00760+6.3.4.21;Reactome: R-HSA-6798695;Reactome: R-HSA-1368108;MetaCyc: PWY-5381;Reactome: R-HSA-197264	"Nicotinate and nicotinamide metabolism";"Neutrophil degranulation";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Pyridine nucleotide cycling (plants)";"Nicotinamide salvaging"
JAMg_model_5269.1	4	KEGG: 00230+2.7.4.3;Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219	"Purine metabolism";"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis"
JAMg_model_16735.1	7	Reactome: R-HSA-203927;Reactome: R-HSA-180746;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-168333;Reactome: R-HSA-1655829;Reactome: R-HSA-6784531	"MicroRNA (miRNA) biogenesis";"Nuclear import of Rev protein";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"NEP/NS2 Interacts with the Cellular Export Machinery";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"tRNA processing in the nucleus"
JAMg_model_2764.5	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_4349.1	8	Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-68877;Reactome: R-HSA-4615885;Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-165054;Reactome: R-HSA-2500257	"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Mitotic Prometaphase";"SUMOylation of DNA replication proteins";"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"Rev-mediated nuclear export of HIV RNA";"Resolution of Sister Chromatid Cohesion"
JAMg_model_19039.1	3	MetaCyc: PWY-7511;Reactome: R-HSA-8866654;Reactome: R-HSA-110314	"Protein ubiquitination";"E3 ubiquitin ligases ubiquitinate target proteins";"Recognition of DNA damage by PCNA-containing replication complex"
JAMg_model_1147.1	2	Reactome: R-HSA-418990;Reactome: R-HSA-5218920	"Adherens junctions interactions";"VEGFR2 mediated vascular permeability"
JAMg_model_13657.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_14247.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_8009.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_2002.4	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_19822.4	19	KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37;MetaCyc: PWY-5913;MetaCyc: PWY-6969;Reactome: R-HSA-71403;KEGG: 00710+1.1.1.37;MetaCyc: PWY-1622;MetaCyc: PWY-5690;Reactome: R-HSA-70263;MetaCyc: PWY-7383;MetaCyc: PWY-561;KEGG: 00020+1.1.1.37;MetaCyc: PWY-5392;MetaCyc: PWY-8086;KEGG: 00630+1.1.1.37;MetaCyc: PWY-7115;KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-6728	"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Citric acid cycle (TCA cycle)";"Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation I (serine pathway)";"TCA cycle II (plants and fungi)";"Gluconeogenesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Citrate cycle (TCA cycle)";"Reductive TCA cycle II";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Glyoxylate and dicarboxylate metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Pyruvate metabolism";"Methane metabolism";"Methylaspartate cycle"
JAMg_model_2436.1	8	MetaCyc: PWY-6556;Reactome: R-HSA-73614;MetaCyc: PWY-7193;KEGG: 00983+3.5.4.5;KEGG: 00240+3.5.4.5;Reactome: R-HSA-6798695;MetaCyc: PWY-7199;MetaCyc: PWY-7181	"Pyrimidine ribonucleosides salvage II";"Pyrimidine salvage";"Pyrimidine ribonucleosides salvage I";"Drug metabolism - other enzymes";"Pyrimidine metabolism";"Neutrophil degranulation";"Pyrimidine deoxyribonucleosides salvage";"Pyrimidine deoxyribonucleosides degradation"
JAMg_model_15810.1	2	Reactome: R-HSA-3214847;Reactome: R-HSA-6804758	"HATs acetylate histones";"Regulation of TP53 Activity through Acetylation"
JAMg_model_13397.5	7	Reactome: R-HSA-1483191;MetaCyc: PWY-7782;MetaCyc: PWY-3385;Reactome: R-HSA-1483213;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7886;MetaCyc: PWY-7818	"Synthesis of PC";"Plasmalogen biosynthesis";"Choline biosynthesis I";"Synthesis of PE";"Glycerophospholipid metabolism";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)"
JAMg_model_11649.1	1	Reactome: R-HSA-389977	"Post-chaperonin tubulin folding pathway"
JAMg_model_12350.1	7	KEGG: 00240+6.3.5.5;MetaCyc: PWY-5154;MetaCyc: PWY-7791;MetaCyc: PWY-7790;MetaCyc: PWY-7400;KEGG: 00250+6.3.5.5;MetaCyc: PWY-5686	"Pyrimidine metabolism";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"UMP biosynthesis III";"UMP biosynthesis II";"L-arginine biosynthesis IV (archaebacteria)";"Alanine, aspartate and glutamate metabolism";"UMP biosynthesis I"
JAMg_model_16422.1	6	Reactome: R-HSA-416993;Reactome: R-HSA-418597;KEGG: 04070+2.7.11.13;Reactome: R-HSA-5099900;Reactome: R-HSA-114516;Reactome: R-HSA-76005	"Trafficking of GluR2-containing AMPA receptors";"G alpha (z) signalling events";"Phosphatidylinositol signaling system";"WNT5A-dependent internalization of FZD4";"Disinhibition of SNARE formation";"Response to elevated platelet cytosolic Ca2+"
JAMg_model_18194.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_11904.4	2	KEGG: 00620+3.1.2.6;MetaCyc: PWY-5386	"Pyruvate metabolism";"Methylglyoxal degradation I"
JAMg_model_11342.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_10324.1	32	Reactome: R-HSA-73776;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-9018519;Reactome: R-HSA-75955;Reactome: R-HSA-72203;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-167160;Reactome: R-HSA-72163;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-77075;Reactome: R-HSA-72086;Reactome: R-HSA-167238	"RNA Polymerase II Promoter Escape";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Estrogen-dependent gene expression";"RNA Polymerase II Transcription Elongation";"Processing of Capped Intron-Containing Pre-mRNA";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"mRNA Splicing - Major Pathway";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation"
JAMg_model_7617.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_5174.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_10191.3	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_15583.2	19	Reactome: R-HSA-3000484;Reactome: R-HSA-3000471;Reactome: R-HSA-8856825;Reactome: R-HSA-8964026;Reactome: R-HSA-8856828;Reactome: R-HSA-8957275;Reactome: R-HSA-3000480;Reactome: R-HSA-202733;Reactome: R-HSA-8964038;Reactome: R-HSA-5686938;Reactome: R-HSA-381426;Reactome: R-HSA-432142;Reactome: R-HSA-975634;Reactome: R-HSA-8866423;Reactome: R-HSA-8963888;Reactome: R-HSA-8964041;Reactome: R-HSA-8964046;Reactome: R-HSA-3000497;Reactome: R-HSA-8963901	"Scavenging by Class F Receptors";"Scavenging by Class B Receptors";"Cargo recognition for clathrin-mediated endocytosis";"Chylomicron clearance";"Clathrin-mediated endocytosis";"Post-translational protein phosphorylation";"Scavenging by Class A Receptors";"Cell surface interactions at the vascular wall";"LDL clearance";"Regulation of TLR by endogenous ligand";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Platelet sensitization by LDL";"Retinoid metabolism and transport";"VLDL assembly";"Chylomicron assembly";"LDL remodeling";"VLDL clearance";"Scavenging by Class H Receptors";"Chylomicron remodeling"
JAMg_model_5084.2	2	KEGG: 00260+2.1.2.10;KEGG: 00670+2.1.2.10	"Glycine, serine and threonine metabolism";"One carbon pool by folate"
JAMg_model_7429.1	1	Reactome: R-HSA-196836	"Vitamin C (ascorbate) metabolism"
JAMg_model_17313.1	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_2885.2	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_578.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_2434.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_21261.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-194840	"RAB GEFs exchange GTP for GDP on RABs";"Rho GTPase cycle"
JAMg_model_9060.1	4	Reactome: R-HSA-5676590;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"NIK-->noncanonical NF-kB signaling";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_14897.1	7	Reactome: R-HSA-165159;Reactome: R-HSA-5628897;Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-166208;Reactome: R-HSA-9639288;Reactome: R-HSA-380972	"mTOR signalling";"TP53 Regulates Metabolic Genes";"Regulation of PTEN gene transcription";"Macroautophagy";"mTORC1-mediated signalling";"Amino acids regulate mTORC1";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_14932.1	1	Reactome: R-HSA-427975	"Proton/oligopeptide cotransporters"
JAMg_model_18918.4	3	MetaCyc: PWY-5386;KEGG: 00620+4.4.1.5;Reactome: R-HSA-70268	"Methylglyoxal degradation I";"Pyruvate metabolism";"Pyruvate metabolism"
JAMg_model_17807.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_9767.1	6	MetaCyc: PWY-7817;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism"
JAMg_model_21364.1	4	Reactome: R-HSA-2214320;Reactome: R-HSA-1650814;Reactome: R-HSA-1474228;Reactome: R-HSA-2243919	"Anchoring fibril formation";"Collagen biosynthesis and modifying enzymes";"Degradation of the extracellular matrix";"Crosslinking of collagen fibrils"
JAMg_model_8159.8	12	MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-7385;KEGG: 00051+4.1.2.13;KEGG: 00030+4.1.2.13;KEGG: 00710+4.1.2.13;KEGG: 00680+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70171;MetaCyc: PWY-1861;MetaCyc: PWY-6142	"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"1,3-propanediol biosynthesis (engineered)";"Fructose and mannose metabolism";"Pentose phosphate pathway";"Carbon fixation in photosynthetic organisms";"Methane metabolism";"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Glycolysis";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)"
JAMg_model_16983.1	4	Reactome: R-HSA-77075;Reactome: R-HSA-167160;MetaCyc: PWY-7375;Reactome: R-HSA-72086	"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Mrna capping I";"mRNA Capping"
JAMg_model_2392.1	1	Reactome: R-HSA-3238698	"WNT ligand biogenesis and trafficking"
JAMg_model_8646.1	10	KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-437239;KEGG: 05170+2.7.11.1;Reactome: R-HSA-444257;Reactome: R-HSA-442742;KEGG: 05163+2.7.11.1	"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Recycling pathway of L1";"Human immunodeficiency virus 1 infection";"RSK activation";"CREB1 phosphorylation through NMDA receptor-mediated activation of RAS signaling";"Human cytomegalovirus infection"
JAMg_model_8476.2	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_18152.2	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_10263.4	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_7643.1	16	Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_18324.2	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_13380.1	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_1248.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-8873719	"RAB GEFs exchange GTP for GDP on RABs";"RAB geranylgeranylation"
JAMg_model_10417.3	1	Reactome: R-HSA-2470946	"Cohesin Loading onto Chromatin"
JAMg_model_1545.1	1	Reactome: R-HSA-5221030	"TET1,2,3 and TDG demethylate DNA"
JAMg_model_12833.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_11411.4	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_1876.2	11	Reactome: R-HSA-1227986;Reactome: R-HSA-8863795;Reactome: R-HSA-1250196;Reactome: R-HSA-8847993;Reactome: R-HSA-9664565;Reactome: R-HSA-6785631;Reactome: R-HSA-2219530;Reactome: R-HSA-5673001;Reactome: R-HSA-1257604;Reactome: R-HSA-6811558;Reactome: R-HSA-1963642	"Signaling by ERBB2";"Downregulation of ERBB2 signaling";"SHC1 events in ERBB2 signaling";"ERBB2 Activates PTK6 Signaling";"Signaling by ERBB2 KD Mutants";"ERBB2 Regulates Cell Motility";"Constitutive Signaling by Aberrant PI3K in Cancer";"RAF/MAP kinase cascade";"PIP3 activates AKT signaling";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"PI3K events in ERBB2 signaling"
JAMg_model_9298.2	6	Reactome: R-HSA-1660499;KEGG: 04070+3.1.3.66;Reactome: R-HSA-1660516;MetaCyc: PWY-6368;KEGG: 00562+3.1.3.66;Reactome: R-HSA-1855183	"Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol signaling system";"Synthesis of PIPs at the early endosome membrane";"3-phosphoinositide degradation";"Inositol phosphate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol"
JAMg_model_2014.1	5	Reactome: R-HSA-197264;MetaCyc: PWY-5381;Reactome: R-HSA-1368108;KEGG: 00760+6.3.4.21;Reactome: R-HSA-6798695	"Nicotinamide salvaging";"Pyridine nucleotide cycling (plants)";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Nicotinate and nicotinamide metabolism";"Neutrophil degranulation"
JAMg_model_3466.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8993.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_11554.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_525.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_11008.2	1	Reactome: R-HSA-433137	"Sodium-coupled sulphate, di- and tri-carboxylate transporters"
JAMg_model_957.3	4	Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-5625970;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"RHO GTPases activate KTN1";"Kinesins"
JAMg_model_14520.1	2	Reactome: R-HSA-426486;Reactome: R-HSA-203927	"Small interfering RNA (siRNA) biogenesis";"MicroRNA (miRNA) biogenesis"
JAMg_model_11521.1	1	KEGG: 00970+6.1.1.16	"Aminoacyl-tRNA biosynthesis"
JAMg_model_18418.3	3	Reactome: R-HSA-191859;Reactome: R-HSA-72163;Reactome: R-HSA-72165	"snRNP Assembly";"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_11566.1	4	Reactome: R-HSA-5694530;Reactome: R-HSA-204005;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695	"Cargo concentration in the ER";"COPII-mediated vesicle transport";"MHC class II antigen presentation";"Neutrophil degranulation"
JAMg_model_7655.5	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_2002.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_9518.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_21295.2	7	MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-7214	"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Betanidin degradation";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)"
JAMg_model_20514.1	3	KEGG: 00860+1.16.3.1;Reactome: R-HSA-1362409;Reactome: R-HSA-1268020	"Porphyrin and chlorophyll metabolism";"Mitochondrial iron-sulfur cluster biogenesis";"Mitochondrial protein import"
JAMg_model_4235.2	6	MetaCyc: PWY-6807;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23	"Xyloglucan degradation II (exoglucanase)";"Other glycan degradation";"Galactose metabolism";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism"
JAMg_model_19415.1	2	MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4	"Cellulose degradation II (fungi)";"Starch and sucrose metabolism"
JAMg_model_9539.1	37	KEGG: 04926+2.7.11.1;Reactome: R-HSA-5693607;KEGG: 05165+2.7.11.1;Reactome: R-HSA-5693571;Reactome: R-HSA-69473;MetaCyc: PWY-4661;MetaCyc: PWY-6372;Reactome: R-HSA-6804757;Reactome: R-HSA-6803207;Reactome: R-HSA-6804756;Reactome: R-HSA-5693565;KEGG: 05163+2.7.11.1;Reactome: R-HSA-6796648;Reactome: R-HSA-5693554;Reactome: R-HSA-5685942;MetaCyc: PWY-6664;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-5693568;Reactome: R-HSA-5693616;Reactome: R-HSA-5693548;Reactome: R-HSA-6803204;KEGG: 00562+5.5.1.4;Reactome: R-HSA-5693579;Reactome: R-HSA-2559586;KEGG: 04714+2.7.11.1;KEGG: 05170+2.7.11.1;MetaCyc: PWY-6580;MetaCyc: PWY-2301;Reactome: R-HSA-6804760;Reactome: R-HSA-912446;Reactome: R-HSA-1855183;Reactome: R-HSA-349425;Reactome: R-HSA-69541;Reactome: R-HSA-3371453;Reactome: R-HSA-5685938;KEGG: 00521+5.5.1.4	"Relaxin signaling pathway";"Processing of DNA double-strand break ends";"Human papillomavirus infection";"Nonhomologous End-Joining (NHEJ)";"G2/M DNA damage checkpoint";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)";"1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)";"Regulation of TP53 Degradation";"TP53 Regulates Transcription of Caspase Activators and Caspases";"Regulation of TP53 Activity through Phosphorylation";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Human cytomegalovirus infection";"TP53 Regulates Transcription of DNA Repair Genes";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Homologous Recombination (HRR)";"Di-myo-inositol phosphate biosynthesis";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Presynaptic phase of homologous DNA pairing and strand exchange";"Sensing of DNA Double Strand Breaks";"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"Inositol phosphate metabolism";"Homologous DNA Pairing and Strand Exchange";"DNA Damage/Telomere Stress Induced Senescence";"Thermogenesis";"Human immunodeficiency virus 1 infection";"Phosphatidylinositol biosynthesis I (bacteria)";"Myo-inositol biosynthesis";"Regulation of TP53 Activity through Methylation";"Meiotic recombination";"Synthesis of IP2, IP, and Ins in the cytosol";"Autodegradation of the E3 ubiquitin ligase COP1";"Stabilization of p53";"Regulation of HSF1-mediated heat shock response";"HDR through Single Strand Annealing (SSA)";"Streptomycin biosynthesis"
JAMg_model_14163.1	9	Reactome: R-HSA-76042;Reactome: R-HSA-75953;Reactome: R-HSA-73779;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-674695;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-6804756	"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Pre-transcription Events";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_10408.1	3	Reactome: R-HSA-6811440;Reactome: R-HSA-6811438;Reactome: R-HSA-8876198	"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_10512.1	10	KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-5826;KEGG: 00430+2.3.2.2;MetaCyc: PWY-8001;MetaCyc: PWY-7112;MetaCyc: PWY-4041;MetaCyc: PWY-7559;MetaCyc: PWY-6842;MetaCyc: PWY-4061;KEGG: 00460+2.3.2.2	"Glutathione metabolism";"Hypoglycin biosynthesis";"Taurine and hypotaurine metabolism";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"4-hydroxy-2-nonenal detoxification";"Gamma-glutamyl cycle";"Glutathione degradation (DUG pathway";"Glutathione-mediated detoxification II";"Glutathione-mediated detoxification I";"Cyanoamino acid metabolism"
JAMg_model_17158.1	40	Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167162;Reactome: R-HSA-9018519;Reactome: R-HSA-6803529;Reactome: R-HSA-5601884;Reactome: R-HSA-76042;Reactome: R-HSA-72203;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-6782135;Reactome: R-HSA-73776;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-77075;Reactome: R-HSA-5617472;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-167238;Reactome: R-HSA-6781823;Reactome: R-HSA-72086;Reactome: R-HSA-6781827;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-167160;Reactome: R-HSA-72163;Reactome: R-HSA-5578749;Reactome: R-HSA-203927;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167287;Reactome: R-HSA-112382	"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Estrogen-dependent gene expression";"FGFR2 alternative splicing";"PIWI-interacting RNA (piRNA) biogenesis";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Dual incision in TC-NER";"RNA Polymerase II Promoter Escape";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"RNA Pol II CTD phosphorylation and interaction with CE";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of TC-NER Pre-Incision Complex";"mRNA Capping";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"mRNA Splicing - Major Pathway";"Transcriptional regulation by small RNAs";"MicroRNA (miRNA) biogenesis";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex"
JAMg_model_13595.1	8	Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-68827;Reactome: R-HSA-68616;Reactome: R-HSA-113507;Reactome: R-HSA-68867;Reactome: R-HSA-176187;Reactome: R-HSA-68689	"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex";"Assembly of the ORC complex at the origin of replication";"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress";"CDC6 association with the ORC:origin complex"
JAMg_model_9685.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_2692.2	15	MetaCyc: PWY-4983;MetaCyc: PWY-6824;KEGG: 00250+4.3.2.1;MetaCyc: PWY-5461;MetaCyc: PWY-4984;Reactome: R-HSA-70635;MetaCyc: PWY-5466;MetaCyc: PWY-5;MetaCyc: PWY-5154;MetaCyc: PWY-5469;MetaCyc: PWY-7400;KEGG: 00940+1.11.1.7;KEGG: 00220+4.3.2.1;MetaCyc: PWY-7445;MetaCyc: PWY-7214	"Nitric oxide biosynthesis II (mammals)";"Justicidin B biosynthesis";"Alanine, aspartate and glutamate metabolism";"Betanidin degradation";"Urea cycle";"Urea cycle";"Matairesinol biosynthesis";"Canavanine biosynthesis";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"Sesamin biosynthesis";"L-arginine biosynthesis IV (archaebacteria)";"Phenylpropanoid biosynthesis";"Arginine biosynthesis";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)"
JAMg_model_6942.1	1	Reactome: R-HSA-389661	"Glyoxylate metabolism and glycine degradation"
JAMg_model_8160.3	12	Reactome: R-HSA-70263;KEGG: 00010+4.1.2.13;KEGG: 00710+4.1.2.13;KEGG: 00680+4.1.2.13;KEGG: 00030+4.1.2.13;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385;MetaCyc: PWY-1042;MetaCyc: PWY-5484;MetaCyc: PWY-6142;MetaCyc: PWY-1861;Reactome: R-HSA-70171	"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Methane metabolism";"Pentose phosphate pathway";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Glycolysis"
JAMg_model_12303.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_15098.1	18	MetaCyc: PWY-7417;Reactome: R-HSA-1482922;Reactome: R-HSA-1482925;MetaCyc: PWY-7416;KEGG: 00592+3.1.1.4;Reactome: R-HSA-1482788;MetaCyc: PWY-8051;KEGG: 00564+3.1.1.4;Reactome: R-HSA-1483166;Reactome: R-HSA-1482839;KEGG: 00565+3.1.1.4;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7409;MetaCyc: PWY-6803;Reactome: R-HSA-1482801;MetaCyc: PWY-8053;KEGG: 00591+3.1.1.4;MetaCyc: PWY-7783	"Phospholipid remodeling (phosphatidate, yeast)";"Acyl chain remodelling of PI";"Acyl chain remodelling of PG";"Phospholipid remodeling (phosphatidylcholine, yeast)";"alpha-Linolenic acid metabolism";"Acyl chain remodelling of PC";"Anandamide biosynthesis I";"Glycerophospholipid metabolism";"Synthesis of PA";"Acyl chain remodelling of PE";"Ether lipid metabolism";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Phosphatidylcholine acyl editing";"Acyl chain remodelling of PS";"Anandamide biosynthesis II";"Linoleic acid metabolism";"Plasmalogen degradation"
JAMg_model_997.2	2	MetaCyc: PWY-6829;Reactome: R-HSA-6782315	"Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol"
JAMg_model_17234.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_1644.1	1	Reactome: R-HSA-382556	"ABC-family proteins mediated transport"
JAMg_model_10600.2	14	Reactome: R-HSA-426496;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-203927;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-8948700;Reactome: R-HSA-9029569;Reactome: R-HSA-4086398;Reactome: R-HSA-426486;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593	"Post-transcriptional silencing by small RNAs";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"MicroRNA (miRNA) biogenesis";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Ca2+ pathway";"Small interfering RNA (siRNA) biogenesis";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity"
JAMg_model_6068.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_14663.1	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_21250.1	4	Reactome: R-HSA-73856;Reactome: R-HSA-77595;Reactome: R-HSA-72163;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"Processing of Intronless Pre-mRNAs";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing"
JAMg_model_20578.1	5	MetaCyc: PWY-7269;Reactome: R-HSA-196807;MetaCyc: PWY-5083;KEGG: 00760+2.7.1.23;MetaCyc: PWY-7268	"NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)";"Nicotinate metabolism";"NAD/NADH phosphorylation and dephosphorylation";"Nicotinate and nicotinamide metabolism";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)"
JAMg_model_6504.1	1	Reactome: R-HSA-5250924	"B-WICH complex positively regulates rRNA expression"
JAMg_model_6360.4	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_18725.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_3505.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_13539.3	7	Reactome: R-HSA-9018519;Reactome: R-HSA-9029569;Reactome: R-HSA-3214842;Reactome: R-HSA-3214815;Reactome: R-HSA-983231;Reactome: R-HSA-8943724;Reactome: R-HSA-5625886	"Estrogen-dependent gene expression";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"HDMs demethylate histones";"HDACs deacetylate histones";"Factors involved in megakaryocyte development and platelet production";"Regulation of PTEN gene transcription";"Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3"
JAMg_model_12129.2	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_17160.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_18888.1	6	MetaCyc: PWY-7656;Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733	"Spodoptera littoralis pheromone biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis"
JAMg_model_13288.1	4	Reactome: R-HSA-6802952;Reactome: R-HSA-6798695;Reactome: R-HSA-983168;Reactome: R-HSA-1632852	"Signaling by BRAF and RAF fusions";"Neutrophil degranulation";"Antigen processing: Ubiquitination & Proteasome degradation";"Macroautophagy"
JAMg_model_20861.2	6	Reactome: R-HSA-73930;Reactome: R-HSA-110357;Reactome: R-HSA-110362;Reactome: R-HSA-73933;Reactome: R-HSA-110373;Reactome: R-HSA-5651801	"Abasic sugar-phosphate removal via the single-nucleotide replacement pathway";"Displacement of DNA glycosylase by APEX1";"POLB-Dependent Long Patch Base Excision Repair";"Resolution of Abasic Sites (AP sites)";"Resolution of AP sites via the multiple-nucleotide patch replacement pathway";"PCNA-Dependent Long Patch Base Excision Repair"
JAMg_model_18340.1	9	KEGG: 00513+3.2.1.52;MetaCyc: PWY-7883;KEGG: 00603+3.2.1.52;KEGG: 00604+3.2.1.52;MetaCyc: PWY-6902;KEGG: 00531+3.2.1.52;MetaCyc: PWY-7822;KEGG: 00511+3.2.1.52;KEGG: 00520+3.2.1.52	"Various types of N-glycan biosynthesis";"Anhydromuropeptides recycling II";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Glycosphingolipid biosynthesis - ganglio series";"Chitin degradation II (Vibrio)";"Glycosaminoglycan degradation";"Chitin degradation III (Serratia)";"Other glycan degradation";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_10745.3	5	Reactome: R-HSA-159236;Reactome: R-HSA-73856;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-72165	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"mRNA Splicing - Minor Pathway"
JAMg_model_20146.1	3	MetaCyc: PWY-5963;Reactome: R-HSA-947581;KEGG: 00790+2.8.1.9	"Thio-molybdenum cofactor biosynthesis";"Molybdenum cofactor biosynthesis";"Folate biosynthesis"
JAMg_model_10083.2	4	MetaCyc: PWY-5030;Reactome: R-HSA-70921;KEGG: 00340+3.5.2.7;MetaCyc: PWY-5028	"L-histidine degradation III";"Histidine catabolism";"Histidine metabolism";"L-histidine degradation II"
JAMg_model_21315.4	15	MetaCyc: PWY-7003;Reactome: R-HSA-70171;MetaCyc: PWY-6142;KEGG: 00620+2.7.1.40;MetaCyc: PWY-7218;KEGG: 00010+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-5484;MetaCyc: PWY-7383;KEGG: 00230+2.7.1.40;MetaCyc: PWY-5723;MetaCyc: PWY-2221;MetaCyc: PWY-8004;MetaCyc: PWY-6886	"Glycerol degradation to butanol";"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Pyruvate metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Purine metabolism";"Rubisco shunt";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)"
JAMg_model_8476.3	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_1116.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_15438.3	17	Reactome: R-HSA-9645460;Reactome: R-HSA-975163;Reactome: R-HSA-5689880;Reactome: R-HSA-450321;Reactome: R-HSA-937072;Reactome: R-HSA-168638;Reactome: R-HSA-5607764;Reactome: R-HSA-4086398;Reactome: R-HSA-445989;Reactome: R-HSA-937042;Reactome: R-HSA-9014325;Reactome: R-HSA-450302;Reactome: R-HSA-1169091;Reactome: R-HSA-5357956;Reactome: R-HSA-2871837;Reactome: R-HSA-9020702;Reactome: R-HSA-202424	"Alpha-protein kinase 1 signaling pathway";"IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation";"Ub-specific processing proteases";"JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1";"TRAF6-mediated induction of TAK1 complex within TLR4 complex";"NOD1/2 Signaling Pathway";"CLEC7A (Dectin-1) signaling";"Ca2+ pathway";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"IRAK2 mediated activation of TAK1 complex";"TICAM1,TRAF6-dependent induction of TAK1 complex";"activated TAK1 mediates p38 MAPK activation";"Activation of NF-kappaB in B cells";"TNFR1-induced NFkappaB signaling pathway";"FCERI mediated NF-kB activation";"Interleukin-1 signaling";"Downstream TCR signaling"
JAMg_model_20172.2	9	KEGG: 04070+3.1.4.11;Reactome: R-HSA-112043;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6367;Reactome: R-HSA-1855204;MetaCyc: PWY-7039;Reactome: R-HSA-416476;MetaCyc: PWY-6351;MetaCyc: PWY-8052	"Phosphatidylinositol signaling system";"PLC beta mediated events";"Inositol phosphate metabolism";"D-myo-inositol-5-phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"Phosphatidate metabolism, as a signaling molecule";"G alpha (q) signalling events";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis"
JAMg_model_107.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_14812.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_3586.1	1	Reactome: R-HSA-1971475	"A tetrasaccharide linker sequence is required for GAG synthesis"
JAMg_model_5689.6	2	Reactome: R-HSA-191859;Reactome: R-HSA-6807505	"snRNP Assembly";"RNA polymerase II transcribes snRNA genes"
JAMg_model_4688.3	8	KEGG: 00240+2.7.4.9;MetaCyc: PWY-7197;MetaCyc: PWY-7184;MetaCyc: PWY-7210;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7187;MetaCyc: PWY-7198	"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotide phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV"
JAMg_model_1775.1	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_19591.1	2	Reactome: R-HSA-1660661;KEGG: 04070+2.7.11.13	"Sphingolipid de novo biosynthesis";"Phosphatidylinositol signaling system"
JAMg_model_20451.1	5	MetaCyc: PWY-7177;MetaCyc: PWY-7185;Reactome: R-HSA-499943;KEGG: 00240+6.3.4.2;MetaCyc: PWY-7176	"UTP and CTP dephosphorylation II";"UTP and CTP dephosphorylation I";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine metabolism";"UTP and CTP de novo biosynthesis"
JAMg_model_1056.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_7537.1	1	Reactome: R-HSA-389661	"Glyoxylate metabolism and glycine degradation"
JAMg_model_2273.3	2	MetaCyc: PWY-6981;KEGG: 00520+2.4.1.16	"Chitin biosynthesis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_17252.3	3	Reactome: R-HSA-3000171;Reactome: R-HSA-8874081;Reactome: R-HSA-3000157	"Non-integrin membrane-ECM interactions";"MET activates PTK2 signaling";"Laminin interactions"
JAMg_model_16806.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_17631.1	6	Reactome: R-HSA-201722;Reactome: R-HSA-3769402;Reactome: R-HSA-4411364;Reactome: R-HSA-4641265;Reactome: R-HSA-4086398;Reactome: R-HSA-8951430	"Formation of the beta-catenin:TCF transactivating complex";"Deactivation of the beta-catenin transactivating complex";"Binding of TCF/LEF:CTNNB1 to target gene promoters";"Repression of WNT target genes";"Ca2+ pathway";"RUNX3 regulates WNT signaling"
JAMg_model_5345.1	3	Reactome: R-HSA-3000157;Reactome: R-HSA-8874081;Reactome: R-HSA-3000171	"Laminin interactions";"MET activates PTK2 signaling";"Non-integrin membrane-ECM interactions"
JAMg_model_6044.2	7	KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1	"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Thermogenesis";"Human papillomavirus infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection"
JAMg_model_19551.1	6	KEGG: 00513+2.4.1.143;KEGG: 00510+2.4.1.143;Reactome: R-HSA-975578;MetaCyc: PWY-7426;Reactome: R-HSA-4793952;MetaCyc: PWY-7920	"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis";"Reactions specific to the complex N-glycan synthesis pathway";"Complex N-linked glycan biosynthesis (vertebrates)";"Defective MGAT2 causes MGAT2-CDG (CDG-2a)";"Complex N-linked glycan biosynthesis (plants)"
JAMg_model_21106.1	2	KEGG: 00450+2.7.9.3;MetaCyc: PWY-6281	"Selenocompound metabolism";"L-selenocysteine biosynthesis II (archaea and eukaryotes)"
JAMg_model_20624.2	3	Reactome: R-HSA-6798695;KEGG: 00511+3.2.1.25;Reactome: R-HSA-8853383	"Neutrophil degranulation";"Other glycan degradation";"Lysosomal oligosaccharide catabolism"
JAMg_model_7565.1	3	KEGG: 00860+2.5.1.17;Reactome: R-HSA-196741;Reactome: R-HSA-3359471	"Porphyrin and chlorophyll metabolism";"Cobalamin (Cbl, vitamin B12) transport and metabolism";"Defective MMAB causes methylmalonic aciduria type cblB"
JAMg_model_20873.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_767.1	11	Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5358606;Reactome: R-HSA-5358565;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-6804756;Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693607;Reactome: R-HSA-5693568	"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"Regulation of TP53 Activity through Phosphorylation";"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Processing of DNA double-strand break ends";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_18430.1	4	Reactome: R-HSA-8856825;Reactome: R-HSA-5696394;Reactome: R-HSA-8951664;Reactome: R-HSA-6781823	"Cargo recognition for clathrin-mediated endocytosis";"DNA Damage Recognition in GG-NER";"Neddylation";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_639.5	24	Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-983189;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833	"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Kinesins";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly"
JAMg_model_308.2	2	Reactome: R-HSA-1660661;Reactome: R-HSA-6798695	"Sphingolipid de novo biosynthesis";"Neutrophil degranulation"
JAMg_model_12757.3	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_15081.1	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_6553.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_15882.1	3	Reactome: R-HSA-8875656;Reactome: R-HSA-8856828;Reactome: R-HSA-8854214	"MET receptor recycling";"Clathrin-mediated endocytosis";"TBC/RABGAPs"
JAMg_model_17580.1	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_20041.1	4	Reactome: R-HSA-1971475;KEGG: 00532+2.4.2.26;KEGG: 00534+2.4.2.26;MetaCyc: PWY-6557	"A tetrasaccharide linker sequence is required for GAG synthesis";"Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate";"Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"Glycosaminoglycan-protein linkage region biosynthesis"
JAMg_model_480.1	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_2735.1	1	MetaCyc: PWY-6829	"Trna methylation (yeast)"
JAMg_model_11736.1	4	KEGG: 00970+6.1.1.17;Reactome: R-HSA-379726;MetaCyc: PWY-5188;KEGG: 00860+6.1.1.17	"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation";"Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism"
JAMg_model_12764.2	16	Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_9134.2	2	Reactome: R-HSA-446203;Reactome: R-HSA-1799339	"Asparagine N-linked glycosylation";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_4265.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_6807.2	5	KEGG: 00290+4.2.1.33;KEGG: 00020+4.2.1.3;KEGG: 00720+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00630+4.2.1.3	"Valine, leucine and isoleucine biosynthesis";"Citrate cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Iron uptake and transport";"Glyoxylate and dicarboxylate metabolism"
JAMg_model_5803.1	12	KEGG: 00630+6.2.1.1;KEGG: 00640+6.2.1.1;MetaCyc: PWY-5108;KEGG: 00620+6.2.1.1;MetaCyc: PWY-7118;KEGG: 00720+6.2.1.1;KEGG: 00680+6.2.1.1;MetaCyc: PWY-6672;MetaCyc: PWY-5132;MetaCyc: PWY-5133;MetaCyc: PWY-7857;KEGG: 00010+6.2.1.1	"Glyoxylate and dicarboxylate metabolism";"Propanoate metabolism";"L-isoleucine biosynthesis V";"Pyruvate metabolism";"Chitin degradation to ethanol";"Carbon fixation pathways in prokaryotes";"Methane metabolism";"Cis-genanyl-coa degradation";"Lupulone and humulone biosynthesis";"Colupulone and cohumulone biosynthesis";"Adlupulone and adhumulone biosynthesis";"Glycolysis / Gluconeogenesis"
JAMg_model_6480.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_8910.2	2	Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_12043.1	2	Reactome: R-HSA-5610787;Reactome: R-HSA-5620924	"Hedgehog 'off' state";"Intraflagellar transport"
JAMg_model_10506.1	1	Reactome: R-HSA-5601884	"PIWI-interacting RNA (piRNA) biogenesis"
JAMg_model_2591.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_19707.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-1660662	"Neutrophil degranulation";"Glycosphingolipid metabolism"
JAMg_model_1677.1	8	KEGG: 00564+3.1.3.27;Reactome: R-HSA-1483148;MetaCyc: PWY-5668;KEGG: 04658+3.1.3.16;MetaCyc: PWY-5269;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;MetaCyc: PWY-7817	"Glycerophospholipid metabolism";"Synthesis of PG";"Cardiolipin biosynthesis I";"Th1 and Th2 cell differentiation";"Cardiolipin biosynthesis II";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_6318.2	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_14197.1	12	Reactome: R-HSA-68962;Reactome: R-HSA-5696397;Reactome: R-HSA-5651801;Reactome: R-HSA-5685942;Reactome: R-HSA-110314;Reactome: R-HSA-5656169;Reactome: R-HSA-174430;Reactome: R-HSA-194840;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-68952;Reactome: R-HSA-5696400	"Activation of the pre-replicative complex";"Gap-filling DNA repair synthesis and ligation in GG-NER";"PCNA-Dependent Long Patch Base Excision Repair";"HDR through Homologous Recombination (HRR)";"Recognition of DNA damage by PCNA-containing replication complex";"Termination of translesion DNA synthesis";"Telomere C-strand synthesis initiation";"Rho GTPase cycle";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"DNA replication initiation";"Dual Incision in GG-NER"
JAMg_model_4485.4	4	Reactome: R-HSA-5689603;MetaCyc: PWY-7437;KEGG: 00514+2.4.1.255;Reactome: R-HSA-3214847	"UCH proteinases";"Protein O-[N-acetyl]-glucosylation";"Other types of O-glycan biosynthesis";"HATs acetylate histones"
JAMg_model_3526.1	1	Reactome: R-HSA-9018519	"Estrogen-dependent gene expression"
JAMg_model_9186.7	6	KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;MetaCyc: PWY-7817;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107	"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism"
JAMg_model_12983.2	3	Reactome: R-HSA-192456;MetaCyc: PWY-6857;KEGG: 00561+3.1.1.3	"Digestion of dietary lipid";"Retinol biosynthesis";"Glycerolipid metabolism"
JAMg_model_10498.1	9	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-446343;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-446353;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Localization of the PINCH-ILK-PARVIN complex to focal adhesions";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human cytomegalovirus infection";"Cell-extracellular matrix interactions";"Human immunodeficiency virus 1 infection"
JAMg_model_16144.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_14520.2	2	Reactome: R-HSA-426486;Reactome: R-HSA-203927	"Small interfering RNA (siRNA) biogenesis";"MicroRNA (miRNA) biogenesis"
JAMg_model_9216.1	12	MetaCyc: PWY-5855;MetaCyc: PWY-5873;MetaCyc: PWY-7230;MetaCyc: PWY-6708;KEGG: 00130+1.14.99.60;MetaCyc: PWY-5871;MetaCyc: PWY-5872;Reactome: R-HSA-2142789;MetaCyc: PWY-5870;MetaCyc: PWY-5857;MetaCyc: PWY-5856;MetaCyc: PWY-7233	"Ubiquinol-7 biosynthesis (prokaryotic)";"Ubiquinol-7 biosynthesis (eukaryotic)";"Ubiquinol-6 biosynthesis from 4-aminobenzoate (yeast)";"Ubiquinol-8 biosynthesis (prokaryotic)";"Ubiquinone and other terpenoid-quinone biosynthesis";"Ubiquinol-9 biosynthesis (eukaryotic)";"Ubiquinol-10 biosynthesis (eukaryotic)";"Ubiquinol biosynthesis";"Ubiquinol-8 biosynthesis (eukaryotic)";"Ubiquinol-10 biosynthesis (prokaryotic)";"Ubiquinol-9 biosynthesis (prokaryotic)";"Ubiquinol-6 bypass biosynthesis (eukaryotic)"
JAMg_model_9427.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_20378.1	5	Reactome: R-HSA-381038;Reactome: R-HSA-901032;Reactome: R-HSA-5358346;MetaCyc: PWY-7511;Reactome: R-HSA-5362768	"XBP1(S) activates chaperone genes";"ER Quality Control Compartment (ERQC)";"Hedgehog ligand biogenesis";"Protein ubiquitination";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD"
JAMg_model_8699.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_7364.2	2	Reactome: R-HSA-6798695;Reactome: R-HSA-8951664	"Neutrophil degranulation";"Neddylation"
JAMg_model_1334.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_3980.1	11	Reactome: R-HSA-111463;Reactome: R-HSA-611105;Reactome: R-HSA-9627069;Reactome: R-HSA-5628897;Reactome: R-HSA-2151201;Reactome: R-HSA-111457;Reactome: R-HSA-111459;Reactome: R-HSA-1268020;Reactome: R-HSA-3299685;Reactome: R-HSA-111464;Reactome: R-HSA-111458	"SMAC (DIABLO) binds to IAPs";"Respiratory electron transport";"Regulation of the apoptosome activity";"TP53 Regulates Metabolic Genes";"Transcriptional activation of mitochondrial biogenesis";"Release of apoptotic factors from the mitochondria";"Activation of caspases through apoptosome-mediated cleavage";"Mitochondrial protein import";"Detoxification of Reactive Oxygen Species";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"Formation of apoptosome"
JAMg_model_8676.1	2	Reactome: R-HSA-70895;KEGG: 00280+1.3.8.4	"Branched-chain amino acid catabolism";"Valine, leucine and isoleucine degradation"
JAMg_model_12108.1	3	Reactome: R-HSA-111471;Reactome: R-HSA-140837;Reactome: R-HSA-9645722	"Apoptotic factor-mediated response";"Intrinsic Pathway of Fibrin Clot Formation";"Defective Intrinsic Pathway for Apoptosis Due to p14ARF Loss of Function"
JAMg_model_14354.1	9	Reactome: R-HSA-5628897;Reactome: R-HSA-9639288;Reactome: R-HSA-5674135;Reactome: R-HSA-165159;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-166208;Reactome: R-HSA-6798695;Reactome: R-HSA-380972	"TP53 Regulates Metabolic Genes";"Amino acids regulate mTORC1";"MAP2K and MAPK activation";"mTOR signalling";"Macroautophagy";"Regulation of PTEN gene transcription";"mTORC1-mediated signalling";"Neutrophil degranulation";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_4874.6	1	Reactome: R-HSA-8873719	"RAB geranylgeranylation"
JAMg_model_14870.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_19128.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_12792.1	7	Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-5620922;Reactome: R-HSA-6814122;Reactome: R-HSA-389957;Reactome: R-HSA-390471;Reactome: R-HSA-6798695	"Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Neutrophil degranulation"
JAMg_model_2017.4	5	Reactome: R-HSA-6798695;KEGG: 00760+6.3.4.21;Reactome: R-HSA-197264;MetaCyc: PWY-5381;Reactome: R-HSA-1368108	"Neutrophil degranulation";"Nicotinate and nicotinamide metabolism";"Nicotinamide salvaging";"Pyridine nucleotide cycling (plants)";"BMAL1:CLOCK,NPAS2 activates circadian gene expression"
JAMg_model_409.3	14	Reactome: R-HSA-5687128;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-168333;Reactome: R-HSA-68877;Reactome: R-HSA-450520;Reactome: R-HSA-69273;Reactome: R-HSA-9634638;Reactome: R-HSA-2467813;Reactome: R-HSA-3769402;Reactome: R-HSA-2500257;Reactome: R-HSA-165054;Reactome: R-HSA-2173788;Reactome: R-HSA-9648025	"MAPK6/MAPK4 signaling";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Mitotic Prometaphase";"HuR (ELAVL1) binds and stabilizes mRNA";"Cyclin A/B1/B2 associated events during G2/M transition";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"Separation of Sister Chromatids";"Deactivation of the beta-catenin transactivating complex";"Resolution of Sister Chromatid Cohesion";"Rev-mediated nuclear export of HIV RNA";"Downregulation of TGF-beta receptor signaling";"EML4 and NUDC in mitotic spindle formation"
JAMg_model_326.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_7407.3	1	Reactome: R-HSA-8963901	"Chylomicron remodeling"
JAMg_model_1523.8	2	Reactome: R-HSA-8949613;Reactome: R-HSA-1268020	"Cristae formation";"Mitochondrial protein import"
JAMg_model_10822.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_8167.1	6	KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733;MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656	"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis"
JAMg_model_4779.1	1	Reactome: R-HSA-201451	"Signaling by BMP"
JAMg_model_21047.3	2	Reactome: R-HSA-6807505;Reactome: R-HSA-72163	"RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway"
JAMg_model_17216.1	4	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-1268020;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial protein import";"Mitochondrial translation termination"
JAMg_model_20628.2	1	Reactome: R-HSA-912446	"Meiotic recombination"
JAMg_model_11773.3	2	Reactome: R-HSA-416476;Reactome: R-HSA-380095	"G alpha (q) signalling events";"Tachykinin receptors bind tachykinins"
JAMg_model_4185.6	2	Reactome: R-HSA-168928;Reactome: R-HSA-70350	"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"Fructose catabolism"
JAMg_model_17785.10	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_8363.2	1	Reactome: R-HSA-72203	"Processing of Capped Intron-Containing Pre-mRNA"
JAMg_model_17847.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_17209.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_1758.3	6	Reactome: R-HSA-390450;Reactome: R-HSA-6814122;Reactome: R-HSA-5620922;Reactome: R-HSA-389960;Reactome: R-HSA-389957;Reactome: R-HSA-390471	"Folding of actin by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"BBSome-mediated cargo-targeting to cilium";"Formation of tubulin folding intermediates by CCT/TriC";"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_21258.1	8	MetaCyc: PWY-7980;Reactome: R-HSA-1222556;KEGG: 00190+7.1.2.2;Reactome: R-HSA-983712;KEGG: 00195+7.1.2.2;Reactome: R-HSA-9639288;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"ATP biosynthesis";"ROS and RNS production in phagocytes";"Oxidative phosphorylation";"Ion channel transport";"Photosynthesis";"Amino acids regulate mTORC1";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_6844.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4042.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_7528.1	2	Reactome: R-HSA-9634600;KEGG: 00051+2.7.1.105+3.1.3.46	"Regulation of glycolysis by fructose 2,6-bisphosphate metabolism";"Fructose and mannose metabolism"
JAMg_model_20344.1	8	MetaCyc: PWY-7922;KEGG: 00514+2.4.1.109;Reactome: R-HSA-5173105;Reactome: R-HSA-5083629;MetaCyc: PWY-7921;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7979;Reactome: R-HSA-5083633	"Protein O-mannosylation II (mammals, core M1 and core M2)";"Other types of O-glycan biosynthesis";"O-linked glycosylation";"Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2";"Protein O-mannosylation I (yeast)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation III (mammals, core M3)";"Defective POMT1 causes MDDGA1, MDDGB1 and MDDGC1"
JAMg_model_943.2	1	Reactome: R-HSA-376172	"DSCAM interactions"
JAMg_model_3438.1	3	Reactome: R-HSA-1566948;Reactome: R-HSA-1474228;Reactome: R-HSA-2129379	"Elastic fibre formation";"Degradation of the extracellular matrix";"Molecules associated with elastic fibres"
JAMg_model_16966.2	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_13351.1	5	Reactome: R-HSA-4085001;Reactome: R-HSA-4341670;Reactome: R-HSA-1660662;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695	"Sialic acid metabolism";"Defective NEU1 causes sialidosis";"Glycosphingolipid metabolism";"MHC class II antigen presentation";"Neutrophil degranulation"
JAMg_model_9488.3	1	Reactome: R-HSA-204626	"Hypusine synthesis from eIF5A-lysine"
JAMg_model_859.1	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_19638.2	13	Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689	"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits"
JAMg_model_4352.1	15	Reactome: R-HSA-9603505;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-167242;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-674695;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167246	"NTRK3 as a dependence receptor";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Abortive elongation of HIV-1 transcript in the absence of Tat";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript"
JAMg_model_11140.3	16	Reactome: R-HSA-174154;Reactome: R-HSA-176408;Reactome: R-HSA-2467813;Reactome: R-HSA-174178;Reactome: R-HSA-8853884;Reactome: R-HSA-179409;Reactome: R-HSA-983168;Reactome: R-HSA-176412;Reactome: R-HSA-69017;Reactome: R-HSA-141430;Reactome: R-HSA-2559582;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-174084;Reactome: R-HSA-174184;Reactome: R-HSA-176409	"APC/C:Cdc20 mediated degradation of Securin";"Regulation of APC/C activators between G1/S and early anaphase";"Separation of Sister Chromatids";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Transcriptional Regulation by VENTX";"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation";"Phosphorylation of the APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"Autodegradation of Cdh1 by Cdh1:APC/C";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of mitotic proteins"
JAMg_model_409.2	14	Reactome: R-HSA-9634638;Reactome: R-HSA-2467813;Reactome: R-HSA-3769402;Reactome: R-HSA-69273;Reactome: R-HSA-450520;Reactome: R-HSA-2500257;Reactome: R-HSA-165054;Reactome: R-HSA-9648025;Reactome: R-HSA-2173788;Reactome: R-HSA-5687128;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-168333;Reactome: R-HSA-68877	"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"Separation of Sister Chromatids";"Deactivation of the beta-catenin transactivating complex";"Cyclin A/B1/B2 associated events during G2/M transition";"HuR (ELAVL1) binds and stabilizes mRNA";"Resolution of Sister Chromatid Cohesion";"Rev-mediated nuclear export of HIV RNA";"EML4 and NUDC in mitotic spindle formation";"Downregulation of TGF-beta receptor signaling";"MAPK6/MAPK4 signaling";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Mitotic Prometaphase"
JAMg_model_16586.1	3	Reactome: R-HSA-6783984;KEGG: 00670+2.1.2.10;KEGG: 00260+2.1.2.10	"Glycine degradation";"One carbon pool by folate";"Glycine, serine and threonine metabolism"
JAMg_model_305.1	1	Reactome: R-HSA-1614558	"Degradation of cysteine and homocysteine"
JAMg_model_17536.3	3	Reactome: R-HSA-3214847;MetaCyc: PWY-6854;Reactome: R-HSA-3299685	"HATs acetylate histones";"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species"
JAMg_model_4834.1	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_19485.1	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_4349.4	8	Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-165054;Reactome: R-HSA-2500257;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4615885;Reactome: R-HSA-68877	"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"Rev-mediated nuclear export of HIV RNA";"Resolution of Sister Chromatid Cohesion";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of DNA replication proteins";"Mitotic Prometaphase"
JAMg_model_6525.4	1	Reactome: R-HSA-435368	"Zinc efflux and compartmentalization by the SLC30 family"
JAMg_model_357.1	9	Reactome: R-HSA-75953;Reactome: R-HSA-73779;Reactome: R-HSA-76042;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161	"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation"
JAMg_model_16999.1	8	Reactome: R-HSA-5628897;Reactome: R-HSA-9639288;Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-165159;Reactome: R-HSA-3371571;Reactome: R-HSA-380972;Reactome: R-HSA-166208	"TP53 Regulates Metabolic Genes";"Amino acids regulate mTORC1";"Regulation of PTEN gene transcription";"Macroautophagy";"mTOR signalling";"HSF1-dependent transactivation";"Energy dependent regulation of mTOR by LKB1-AMPK";"mTORC1-mediated signalling"
JAMg_model_15312.1	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_10663.2	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_15653.1	17	MetaCyc: PWY-1622;KEGG: 00710+1.1.1.37;MetaCyc: PWY-5690;MetaCyc: PWY-7383;MetaCyc: PWY-561;KEGG: 00020+1.1.1.37;KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-6728;MetaCyc: PWY-5392;MetaCyc: PWY-8086;KEGG: 00630+1.1.1.37;MetaCyc: PWY-7115	"Formaldehyde assimilation I (serine pathway)";"Carbon fixation in photosynthetic organisms";"TCA cycle II (plants and fungi)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Citrate cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Pyruvate metabolism";"Methane metabolism";"Methylaspartate cycle";"Reductive TCA cycle II";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Glyoxylate and dicarboxylate metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type"
JAMg_model_3346.1	4	MetaCyc: PWY-6803;KEGG: 00564+3.1.1.32;KEGG: 00592+3.1.1.32;MetaCyc: PWY-8051	"Phosphatidylcholine acyl editing";"Glycerophospholipid metabolism";"alpha-Linolenic acid metabolism";"Anandamide biosynthesis I"
JAMg_model_12049.1	52	Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-5250924;Reactome: R-HSA-72203;Reactome: R-HSA-76042;Reactome: R-HSA-5601884;Reactome: R-HSA-6803529;Reactome: R-HSA-1834949;Reactome: R-HSA-9018519;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167162;Reactome: R-HSA-6782210;Reactome: R-HSA-76061;Reactome: R-HSA-75955;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-76071;Reactome: R-HSA-167200;Reactome: R-HSA-76066;Reactome: R-HSA-6796648;Reactome: R-HSA-73762;Reactome: R-HSA-73980;Reactome: R-HSA-73776;Reactome: R-HSA-73772;Reactome: R-HSA-6782135;Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-6781823;Reactome: R-HSA-73863;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-5617472;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-77075;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-203927;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-73780;Reactome: R-HSA-749476;Reactome: R-HSA-72163;Reactome: R-HSA-5578749;Reactome: R-HSA-427413;Reactome: R-HSA-167160;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-168325;Reactome: R-HSA-6781827;Reactome: R-HSA-6807505	"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"B-WICH complex positively regulates rRNA expression";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"PIWI-interacting RNA (piRNA) biogenesis";"FGFR2 alternative splicing";"Cytosolic sensors of pathogen-associated DNA";"Estrogen-dependent gene expression";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase II Transcription Elongation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase I Transcription Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase II Promoter Escape";"RNA Polymerase I Promoter Escape";"Dual incision in TC-NER";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase I Transcription Termination";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"MicroRNA (miRNA) biogenesis";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Abortive And Retractive Initiation";"mRNA Splicing - Major Pathway";"Transcriptional regulation by small RNAs";"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Viral Messenger RNA Synthesis";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA polymerase II transcribes snRNA genes"
JAMg_model_19491.1	4	MetaCyc: PWY-7250;KEGG: 00730+2.8.1.7;Reactome: R-HSA-1362409;Reactome: R-HSA-947581	"[2Fe-2S] iron-sulfur cluster biosynthesis";"Thiamine metabolism";"Mitochondrial iron-sulfur cluster biogenesis";"Molybdenum cofactor biosynthesis"
JAMg_model_1632.2	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_8031.2	3	MetaCyc: PWY-6823;Reactome: R-HSA-947581;KEGG: 00790+2.10.1.1	"Molybdenum cofactor biosynthesis";"Molybdenum cofactor biosynthesis";"Folate biosynthesis"
JAMg_model_8134.2	4	MetaCyc: PWY-5188;Reactome: R-HSA-189451;KEGG: 00860+4.2.1.75;MetaCyc: PWY-5189	"Tetrapyrrole biosynthesis I (from glutamate)";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis II (from glycine)"
JAMg_model_860.1	2	Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_2842.1	17	Reactome: R-HSA-983168;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-975956;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012	"Antigen processing: Ubiquitination & Proteasome degradation";"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_4701.2	4	Reactome: R-HSA-189483;MetaCyc: PWY-5874;KEGG: 00860+1.14.14.18;Reactome: R-HSA-917937	"Heme degradation";"Heme degradation I";"Porphyrin and chlorophyll metabolism";"Iron uptake and transport"
JAMg_model_561.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_8199.1	8	KEGG: 05170+2.7.11.1;Reactome: R-HSA-428540;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1	"Human immunodeficiency virus 1 infection";"Activation of RAC1";"Human cytomegalovirus infection";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"PI3K-Akt signaling pathway";"mTOR signaling pathway"
JAMg_model_1689.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_1640.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_5574.3	2	Reactome: R-HSA-4641265;Reactome: R-HSA-5339700	"Repression of WNT target genes";"TCF7L2 mutants don't bind CTBP"
JAMg_model_18681.2	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_15509.1	2	KEGG: 04070+2.7.11.13;Reactome: R-HSA-5625740	"Phosphatidylinositol signaling system";"RHO GTPases activate PKNs"
JAMg_model_5139.1	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_8640.1	7	Reactome: R-HSA-6804114;Reactome: R-HSA-1538133;Reactome: R-HSA-2173796;Reactome: R-HSA-1362300;Reactome: R-HSA-69231;Reactome: R-HSA-69205;Reactome: R-HSA-1362277	"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"G0 and Early G1";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"Cyclin D associated events in G1";"G1/S-Specific Transcription";"Transcription of E2F targets under negative control by DREAM complex"
JAMg_model_18024.1	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_11422.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_10981.1	2	Reactome: R-HSA-5693568;Reactome: R-HSA-6783310	"Resolution of D-loop Structures through Holliday Junction Intermediates";"Fanconi Anemia Pathway"
JAMg_model_10344.1	3	KEGG: 00230+4.6.1.2;Reactome: R-HSA-392154;Reactome: R-HSA-445355	"Purine metabolism";"Nitric oxide stimulates guanylate cyclase";"Smooth Muscle Contraction"
JAMg_model_6758.3	7	KEGG: 00020+2.3.1.61;Reactome: R-HSA-71064;Reactome: R-HSA-389661;KEGG: 00380+2.3.1.61;KEGG: 00310+2.3.1.61;Reactome: R-HSA-71403;MetaCyc: PWY-5084	"Citrate cycle (TCA cycle)";"Lysine catabolism";"Glyoxylate metabolism and glycine degradation";"Tryptophan metabolism";"Lysine degradation";"Citric acid cycle (TCA cycle)";"2-oxoglutarate decarboxylation to succinyl-CoA"
JAMg_model_2260.1	1	Reactome: R-HSA-5649702	"APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway"
JAMg_model_1823.1	13	MetaCyc: PWY-7410;MetaCyc: PWY-6383;MetaCyc: PWY-7736;MetaCyc: PWY-7659;MetaCyc: PWY-5123;MetaCyc: PWY-7141;MetaCyc: PWY-7102;MetaCyc: PWY-5122;MetaCyc: PWY-6859;MetaCyc: PWY-7721;MetaCyc: PWY-7709;KEGG: 00900+2.5.1.10+2.5.1.1;MetaCyc: PWY-7182	"Ipsdienol biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"Stellatic acid biosynthesis";"Viridicatumtoxin biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"(3S)-linalool biosynthesis";"Bisabolene biosynthesis (engineered)";"Geranyl diphosphate biosynthesis";"All-trans-farnesol biosynthesis";"Methyl phomopsenoate biosynthesis";"(3R)-linalool biosynthesis";"Terpenoid backbone biosynthesis";"Linalool biosynthesis I"
JAMg_model_393.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_65.1	3	Reactome: R-HSA-196807;Reactome: R-HSA-73621;Reactome: R-HSA-74259	"Nicotinate metabolism";"Pyrimidine catabolism";"Purine catabolism"
JAMg_model_7655.3	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_4813.2	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_20738.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_15725.4	1	KEGG: 00450+1.8.1.9	"Selenocompound metabolism"
JAMg_model_14229.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_16579.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_18125.4	9	MetaCyc: PWY-7883;KEGG: 00513+3.2.1.52;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52;MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;MetaCyc: PWY-6902;KEGG: 00511+3.2.1.52;KEGG: 00520+3.2.1.52	"Anhydromuropeptides recycling II";"Various types of N-glycan biosynthesis";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Chitin degradation II (Vibrio)";"Other glycan degradation";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_21066.2	15	Reactome: R-HSA-674695;Reactome: R-HSA-6807505;Reactome: R-HSA-75955;Reactome: R-HSA-9018519;Reactome: R-HSA-167246;Reactome: R-HSA-2173796;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167200;Reactome: R-HSA-176034;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-167287	"RNA Polymerase II Pre-transcription Events";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Elongation";"Estrogen-dependent gene expression";"Tat-mediated elongation of the HIV-1 transcript";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Interactions of Tat with host cellular proteins";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"HIV elongation arrest and recovery"
JAMg_model_3454.3	3	MetaCyc: PWY-6619;Reactome: R-HSA-74217;KEGG: 00230+2.7.1.20	"Adenine and adenosine salvage VI";"Purine salvage";"Purine metabolism"
JAMg_model_7284.1	43	Reactome: R-HSA-5358749;Reactome: R-HSA-198753;Reactome: R-HSA-163767;Reactome: R-HSA-113501;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-6804757;Reactome: R-HSA-380259;Reactome: R-HSA-2465910;Reactome: R-HSA-9648025;Reactome: R-HSA-5358751;Reactome: R-HSA-6811558;Reactome: R-HSA-1295596;Reactome: R-HSA-9634600;Reactome: R-HSA-5339716;Reactome: R-HSA-389513;Reactome: R-HSA-5673000;Reactome: R-HSA-69231;Reactome: R-HSA-975957;Reactome: R-HSA-5467337;Reactome: R-HSA-5675221;Reactome: R-HSA-5467348;Reactome: R-HSA-180024;Reactome: R-HSA-380284;Reactome: R-HSA-68877;Reactome: R-HSA-5358752;Reactome: R-HSA-4641262;Reactome: R-HSA-69273;Reactome: R-HSA-5358747;Reactome: R-HSA-2995383;Reactome: R-HSA-202670;Reactome: R-HSA-380320;Reactome: R-HSA-141444;Reactome: R-HSA-2565942;Reactome: R-HSA-5663220;Reactome: R-HSA-195253;Reactome: R-HSA-432142;Reactome: R-HSA-380270;Reactome: R-HSA-5467340;Reactome: R-HSA-8854518;Reactome: R-HSA-196299;Reactome: R-HSA-5620912;Reactome: R-HSA-163685	"S37 mutants of beta-catenin aren't phosphorylated";"ERK/MAPK targets";"PP2A-mediated dephosphorylation of key metabolic factors";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Regulation of TP53 Degradation";"Loss of Nlp from mitotic centrosomes";"MASTL Facilitates Mitotic Progression";"EML4 and NUDC in mitotic spindle formation";"S45 mutants of beta-catenin aren't phosphorylated";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Spry regulation of FGF signaling";"Regulation of glycolysis by fructose 2,6-bisphosphate metabolism";"Misspliced GSK3beta mutants stabilize beta-catenin";"CTLA4 inhibitory signaling";"RAF activation";"Cyclin D associated events in G1";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"APC truncation mutants have impaired AXIN binding";"Negative regulation of MAPK pathway";"Truncations of AMER1 destabilize the destruction complex";"DARPP-32 events";"Loss of proteins required for interphase microtubule organization from the centrosome";"Mitotic Prometaphase";"T41 mutants of beta-catenin aren't phosphorylated";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"Cyclin A/B1/B2 associated events during G2/M transition";"S33 mutants of beta-catenin aren't phosphorylated";"Initiation of Nuclear Envelope Reformation";"ERKs are inactivated";"Recruitment of NuMA to mitotic centrosomes";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Regulation of PLK1 Activity at G2/M Transition";"RHO GTPases Activate Formins";"Degradation of beta-catenin by the destruction complex";"Platelet sensitization by LDL";"Recruitment of mitotic centrosome proteins and complexes";"AXIN missense mutants destabilize the destruction complex";"AURKA Activation by TPX2";"Beta-catenin phosphorylation cascade";"Anchoring of the basal body to the plasma membrane";"Integration of energy metabolism"
JAMg_model_10856.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_8900.3	2	Reactome: R-HSA-1268020;Reactome: R-HSA-71403	"Mitochondrial protein import";"Citric acid cycle (TCA cycle)"
JAMg_model_583.5	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_5088.1	16	MetaCyc: PWY-2221;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-7124;MetaCyc: PWY-7218;KEGG: 00010+4.2.1.11;MetaCyc: PWY-6142;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-1622;MetaCyc: PWY-5723;Reactome: R-HSA-70263;MetaCyc: PWY-5484;KEGG: 00680+4.2.1.11;Reactome: R-HSA-70171;MetaCyc: PWY-7003	"Entner-Doudoroff pathway III (semi-phosphorylative)";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Ethylene biosynthesis V (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Formaldehyde assimilation I (serine pathway)";"Rubisco shunt";"Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Methane metabolism";"Glycolysis";"Glycerol degradation to butanol"
JAMg_model_113.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_5682.2	1	Reactome: R-HSA-3295583	"TRP channels"
JAMg_model_4331.1	1	Reactome: R-HSA-186797	"Signaling by PDGF"
JAMg_model_7864.4	3	Reactome: R-HSA-6811434;Reactome: R-HSA-983189;Reactome: R-HSA-390471	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_4970.3	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_3632.1	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_7461.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_20314.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_156.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_20586.1	3	Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing"
JAMg_model_11239.2	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_10058.3	2	Reactome: R-HSA-6785470;Reactome: R-HSA-6784531	"tRNA processing in the mitochondrion";"tRNA processing in the nucleus"
JAMg_model_14120.1	11	Reactome: R-HSA-4420097;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-2559580;Reactome: R-HSA-171007;Reactome: R-HSA-450302;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1	"VEGFA-VEGFR2 Pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Oxidative Stress Induced Senescence";"p38MAPK events";"activated TAK1 mediates p38 MAPK activation";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"mTOR signaling pathway";"PI3K-Akt signaling pathway"
JAMg_model_17216.2	4	Reactome: R-HSA-5389840;Reactome: R-HSA-1268020;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial protein import";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_17419.3	12	Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-381038;Reactome: R-HSA-2565942;Reactome: R-HSA-3371497;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-2132295;Reactome: R-HSA-5620912;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-8854518	"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"XBP1(S) activates chaperone genes";"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"MHC class II antigen presentation";"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"AURKA Activation by TPX2"
JAMg_model_3148.2	8	KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 05163+2.7.11.1	"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human immunodeficiency virus 1 infection";"Signaling by Hippo";"Human cytomegalovirus infection"
JAMg_model_16448.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_9194.2	6	MetaCyc: PWY-7234;Reactome: R-HSA-73817;KEGG: 00230+3.5.4.10+2.1.2.3;KEGG: 00670+2.1.2.3;MetaCyc: PWY-6124;MetaCyc: PWY-6123	"Inosine-5'-phosphate biosynthesis III";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"One carbon pool by folate";"Inosine-5'-phosphate biosynthesis II";"Inosine-5'-phosphate biosynthesis I"
JAMg_model_5088.4	16	Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00680+4.2.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-1622;MetaCyc: PWY-5723;Reactome: R-HSA-70263;KEGG: 00010+4.2.1.11;MetaCyc: PWY-6142;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-7124;MetaCyc: PWY-7218;MetaCyc: PWY-2221	"Glycolysis";"Glycerol degradation to butanol";"Methane metabolism";"Glycolysis II (from fructose 6-phosphate)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Formaldehyde assimilation I (serine pathway)";"Rubisco shunt";"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Ethylene biosynthesis V (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)"
JAMg_model_21301.1	3	Reactome: R-HSA-8866654;Reactome: R-HSA-9603798;Reactome: R-HSA-9033241	"E3 ubiquitin ligases ubiquitinate target proteins";"Class I peroxisomal membrane protein import";"Peroxisomal protein import"
JAMg_model_12780.3	2	Reactome: R-HSA-3214815;Reactome: R-HSA-427413	"HDACs deacetylate histones";"NoRC negatively regulates rRNA expression"
JAMg_model_9518.2	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_2206.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_15950.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_11757.4	6	Reactome: R-HSA-8874211;Reactome: R-HSA-8957275;Reactome: R-HSA-8963889;Reactome: R-HSA-1655829;Reactome: R-HSA-381033;Reactome: R-HSA-381426	"CREB3 factors activate genes";"Post-translational protein phosphorylation";"Assembly of active LPL and LIPC lipase complexes";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"ATF6 (ATF6-alpha) activates chaperones";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)"
JAMg_model_19213.3	3	KEGG: 00511+3.2.1.51;MetaCyc: PWY-6807;Reactome: R-HSA-6798695	"Other glycan degradation";"Xyloglucan degradation II (exoglucanase)";"Neutrophil degranulation"
JAMg_model_4487.2	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_9280.3	4	Reactome: R-HSA-3232142;Reactome: R-HSA-8951664;Reactome: R-HSA-983168;Reactome: R-HSA-1234176	"SUMOylation of ubiquitinylation proteins";"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha"
JAMg_model_19898.1	2	Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_3199.1	2	KEGG: 00520+5.4.2.10;MetaCyc: PWY-6749	"Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I"
JAMg_model_19107.1	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_13230.1	2	KEGG: 00561+2.7.1.30;MetaCyc: PWY-4261	"Glycerolipid metabolism";"Glycerol degradation I"
JAMg_model_6375.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_17676.1	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_4235.1	6	MetaCyc: PWY-6807;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23	"Xyloglucan degradation II (exoglucanase)";"Other glycan degradation";"Galactose metabolism";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism"
JAMg_model_19167.1	11	KEGG: 00565+3.1.3.4;MetaCyc: PWY-8051;Reactome: R-HSA-2029485;KEGG: 00561+3.1.3.4;MetaCyc: PWY-7782;MetaCyc: PWY-8053;KEGG: 00600+3.1.3.4;MetaCyc: PWY-8052;KEGG: 00564+3.1.3.4;MetaCyc: PWY-6453;MetaCyc: PWY-8055	"Ether lipid metabolism";"Anandamide biosynthesis I";"Role of phospholipids in phagocytosis";"Glycerolipid metabolism";"Plasmalogen biosynthesis";"Anandamide biosynthesis II";"Sphingolipid metabolism";"2-arachidonoylglycerol biosynthesis";"Glycerophospholipid metabolism";"Stigma estolide biosynthesis";"Palmitoyl ethanolamide biosynthesis"
JAMg_model_10409.2	3	Reactome: R-HSA-6811438;Reactome: R-HSA-8876198;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"RAB GEFs exchange GTP for GDP on RABs";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_14338.3	5	Reactome: R-HSA-2206305;Reactome: R-HSA-2022857;Reactome: R-HSA-432720;Reactome: R-HSA-6798695;KEGG: 00531+3.1.6.14	"MPS IIID - Sanfilippo syndrome D";"Keratan sulfate degradation";"Lysosome Vesicle Biogenesis";"Neutrophil degranulation";"Glycosaminoglycan degradation"
JAMg_model_5534.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_13503.2	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_2200.1	3	Reactome: R-HSA-2142691;Reactome: R-HSA-5423646;MetaCyc: PWY-7533	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Aflatoxin activation and detoxification";"Gliotoxin biosynthesis"
JAMg_model_8220.4	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_18051.1	2	Reactome: R-HSA-110320;Reactome: R-HSA-5689880	"Translesion Synthesis by POLH";"Ub-specific processing proteases"
JAMg_model_671.2	6	Reactome: R-HSA-5693607;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-6804756;Reactome: R-HSA-176187;Reactome: R-HSA-5685938	"Processing of DNA double-strand break ends";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Regulation of TP53 Activity through Phosphorylation";"Activation of ATR in response to replication stress";"HDR through Single Strand Annealing (SSA)"
JAMg_model_8784.3	3	Reactome: R-HSA-5693571;Reactome: R-HSA-3108214;Reactome: R-HSA-164843	"Nonhomologous End-Joining (NHEJ)";"SUMOylation of DNA damage response and repair proteins";"2-LTR circle formation"
JAMg_model_9696.1	27	Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-4615885;Reactome: R-HSA-168333;Reactome: R-HSA-3371453;Reactome: R-HSA-1169408;Reactome: R-HSA-159230;Reactome: R-HSA-3232142;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-4570464;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-159236;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377;Reactome: R-HSA-168271;Reactome: R-HSA-159227;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-170822;Reactome: R-HSA-168276	"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA replication proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Regulation of HSF1-mediated heat shock response";"ISG15 antiviral mechanism";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of ubiquitinylation proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"SUMOylation of RNA binding proteins";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of the SLBP independent Mature mRNA";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NS1 Mediated Effects on Host Pathways"
JAMg_model_17808.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_10407.2	3	Reactome: R-HSA-6811440;Reactome: R-HSA-8876198;Reactome: R-HSA-6811438	"Retrograde transport at the Trans-Golgi-Network";"RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic"
JAMg_model_20739.1	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_13503.5	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_13054.5	3	KEGG: 00270+5.3.1.23;MetaCyc: PWY-7174;MetaCyc: PWY-4361	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I"
JAMg_model_18807.1	2	Reactome: R-HSA-210746;Reactome: R-HSA-210745	"Regulation of gene expression in endocrine-committed (NEUROG3+) progenitor cells";"Regulation of gene expression in beta cells"
JAMg_model_10566.3	3	Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837	"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases"
JAMg_model_19067.1	9	MetaCyc: PWY-7115;MetaCyc: PWY-5789;KEGG: 00910+4.2.1.1;Reactome: R-HSA-1475029;MetaCyc: PWY-7117;MetaCyc: PWY-6142;MetaCyc: PWY-5743;MetaCyc: PWY-5744;MetaCyc: PWY-241	"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Nitrogen metabolism";"Reversible hydration of carbon dioxide";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"3-hydroxypropanoate cycle";"Glyoxylate assimilation";"C4 photosynthetic carbon assimilation cycle, NADP-ME type"
JAMg_model_13295.2	5	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;Reactome: R-HSA-176407;KEGG: 04658+3.1.3.16;Reactome: R-HSA-5687128	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Th1 and Th2 cell differentiation";"MAPK6/MAPK4 signaling"
JAMg_model_19983.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_1264.1	3	Reactome: R-HSA-1660517;Reactome: R-HSA-1660516;Reactome: R-HSA-1660514	"Synthesis of PIPs at the late endosome membrane";"Synthesis of PIPs at the early endosome membrane";"Synthesis of PIPs at the Golgi membrane"
JAMg_model_4582.1	7	MetaCyc: PWY-8026;Reactome: R-HSA-9022692;MetaCyc: PWY-7154;MetaCyc: PWY-2541;Reactome: R-HSA-191273;MetaCyc: PWY-6074;KEGG: 00100+1.3.1.70	"Sterol biosynthesis (methylotrophs)";"Regulation of MECP2 expression and activity";"Ergosterol biosynthesis II";"Phytosterol biosynthesis (plants)";"Cholesterol biosynthesis";"Zymosterol biosynthesis";"Steroid biosynthesis"
JAMg_model_6360.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_7191.1	4	Reactome: R-HSA-5683678;Reactome: R-HSA-5683826;Reactome: R-HSA-5688399;Reactome: R-HSA-1369062	"Defective ABCA3 causes pulmonary surfactant metabolism dysfunction type 3 (SMDP3)";"Surfactant metabolism";"Defective ABCA3 causes pulmonary surfactant metabolism dysfunction 3 (SMDP3)";"ABC transporters in lipid homeostasis"
JAMg_model_8298.5	4	Reactome: R-HSA-1912420;Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837	"Pre-NOTCH Processing in Golgi";"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases"
JAMg_model_3193.1	4	Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-3928662;Reactome: R-HSA-8856828	"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"EPHB-mediated forward signaling";"Clathrin-mediated endocytosis"
JAMg_model_15870.7	8	KEGG: 00052+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00500+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00520+2.7.1.1;Reactome: R-HSA-70171	"Galactose metabolism";"Glycolysis / Gluconeogenesis";"Neomycin, kanamycin and gentamicin biosynthesis";"Fructose and mannose metabolism";"Starch and sucrose metabolism";"Streptomycin biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Glycolysis"
JAMg_model_12569.1	13	MetaCyc: PWY-7384;MetaCyc: PWY-6728;MetaCyc: PWY-5538;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5537;Reactome: R-HSA-71403;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-5913;MetaCyc: PWY-6969;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5	"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Methylaspartate cycle";"Pyruvate fermentation to acetate VI";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate V";"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Reductive TCA cycle II";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Citrate cycle (TCA cycle)";"Propanoate metabolism"
JAMg_model_583.7	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_18110.1	14	MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-5080;MetaCyc: PWY-7725;MetaCyc: PWY-7602;MetaCyc: PWY-6433;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7619;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-7035;MetaCyc: PWY-5972	"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Fatty acid elongation";"Juniperonate biosynthesis";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)"
JAMg_model_19605.1	3	MetaCyc: PWY-7887;Reactome: R-HSA-6787450;MetaCyc: PWY-7892	"Protein SAMPylation and SAMP-mediated thiolation";"tRNA modification in the mitochondrion";"Trna-uridine 2-thiolation and selenation (bacteria)"
JAMg_model_13332.1	5	MetaCyc: PWY-7383;KEGG: 00010+4.1.1.32;KEGG: 00620+4.1.1.32;Reactome: R-HSA-70263;KEGG: 00020+4.1.1.32	"Anaerobic energy metabolism (invertebrates, cytosol)";"Glycolysis / Gluconeogenesis";"Pyruvate metabolism";"Gluconeogenesis";"Citrate cycle (TCA cycle)"
JAMg_model_7957.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_10182.2	5	Reactome: R-HSA-6807878;Reactome: R-HSA-3371497;Reactome: R-HSA-983231;Reactome: R-HSA-6811436;Reactome: R-HSA-2132295	"COPI-mediated anterograde transport";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Factors involved in megakaryocyte development and platelet production";"COPI-independent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation"
JAMg_model_19003.5	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_13514.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_11556.5	15	Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-8948700;Reactome: R-HSA-9029569;Reactome: R-HSA-8936459;Reactome: R-HSA-1912408;Reactome: R-HSA-4086398;Reactome: R-HSA-8934593;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723	"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Pre-NOTCH Transcription and Translation";"Ca2+ pathway";"Regulation of RUNX1 Expression and Activity";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation"
JAMg_model_15388.1	4	Reactome: R-HSA-8939243;Reactome: R-HSA-375280;Reactome: R-HSA-416476;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Amine ligand-binding receptors";"G alpha (q) signalling events";"RMTs methylate histone arginines"
JAMg_model_5767.1	1	Reactome: R-HSA-191859	"snRNP Assembly"
JAMg_model_583.3	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_16456.3	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_11719.1	7	KEGG: 00270+6.3.2.2;MetaCyc: PWY-7255;KEGG: 00480+6.3.2.2;MetaCyc: PWY-8043;Reactome: R-HSA-5578999;MetaCyc: PWY-6840;Reactome: R-HSA-174403	"Cysteine and methionine metabolism";"Ergothioneine biosynthesis I (bacteria)";"Glutathione metabolism";"Ophthalmate biosynthesis";"Defective GCLC causes Hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency (HAGGSD)";"Homoglutathione biosynthesis";"Glutathione synthesis and recycling"
JAMg_model_11511.2	7	KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2;Reactome: R-HSA-8964539;KEGG: 00250+3.5.1.2;Reactome: R-HSA-5628897;Reactome: R-HSA-210500;MetaCyc: PWY-5921	"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism";"Glutamate and glutamine metabolism";"Alanine, aspartate and glutamate metabolism";"TP53 Regulates Metabolic Genes";"Glutamate Neurotransmitter Release Cycle";"Glutaminyl-trnagln biosynthesis via transamidation"
JAMg_model_1555.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_13830.1	3	Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing"
JAMg_model_7234.1	5	Reactome: R-HSA-2644606;Reactome: R-HSA-350054;Reactome: R-HSA-2122947;Reactome: R-HSA-2894862;Reactome: R-HSA-3214815	"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Notch-HLH transcription pathway";"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"HDACs deacetylate histones"
JAMg_model_1679.1	22	Reactome: R-HSA-196299;Reactome: R-HSA-5673000;Reactome: R-HSA-389513;Reactome: R-HSA-5467340;Reactome: R-HSA-5339716;Reactome: R-HSA-432142;Reactome: R-HSA-195253;Reactome: R-HSA-6811558;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-5358751;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-5358747;Reactome: R-HSA-2467813;Reactome: R-HSA-4641262;Reactome: R-HSA-5358752;Reactome: R-HSA-68877;Reactome: R-HSA-5467348;Reactome: R-HSA-5675221;Reactome: R-HSA-5358749;Reactome: R-HSA-5467337	"Beta-catenin phosphorylation cascade";"RAF activation";"CTLA4 inhibitory signaling";"AXIN missense mutants destabilize the destruction complex";"Misspliced GSK3beta mutants stabilize beta-catenin";"Platelet sensitization by LDL";"Degradation of beta-catenin by the destruction complex";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"S45 mutants of beta-catenin aren't phosphorylated";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"S33 mutants of beta-catenin aren't phosphorylated";"Separation of Sister Chromatids";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"T41 mutants of beta-catenin aren't phosphorylated";"Mitotic Prometaphase";"Truncations of AMER1 destabilize the destruction complex";"Negative regulation of MAPK pathway";"S37 mutants of beta-catenin aren't phosphorylated";"APC truncation mutants have impaired AXIN binding"
JAMg_model_18035.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_12739.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_10072.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-5628897	"Respiratory electron transport";"TP53 Regulates Metabolic Genes"
JAMg_model_20988.2	1	Reactome: R-HSA-9633012	"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_2486.2	2	Reactome: R-HSA-5628897;Reactome: R-HSA-611105	"TP53 Regulates Metabolic Genes";"Respiratory electron transport"
JAMg_model_6301.1	3	Reactome: R-HSA-2022854;Reactome: R-HSA-5173105;Reactome: R-HSA-5083627	"Keratan sulfate biosynthesis";"O-linked glycosylation";"Defective LARGE causes MDDGA6 and MDDGB6"
JAMg_model_9084.3	2	Reactome: R-HSA-72163;Reactome: R-HSA-6807505	"mRNA Splicing - Major Pathway";"RNA polymerase II transcribes snRNA genes"
JAMg_model_1520.2	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_17411.1	4	Reactome: R-HSA-112382;Reactome: R-HSA-75955;Reactome: R-HSA-8866654;Reactome: R-HSA-674695	"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Elongation";"E3 ubiquitin ligases ubiquitinate target proteins";"RNA Polymerase II Pre-transcription Events"
JAMg_model_4987.1	29	Reactome: R-HSA-5696397;Reactome: R-HSA-5358565;Reactome: R-HSA-5358606;Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-69166;Reactome: R-HSA-176187;Reactome: R-HSA-6782210;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-3371453;Reactome: R-HSA-5696395;Reactome: R-HSA-5685938;Reactome: R-HSA-3108214;Reactome: R-HSA-3371511;Reactome: R-HSA-912446;Reactome: R-HSA-6782135;Reactome: R-HSA-6783310;Reactome: R-HSA-5655862;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-110314;Reactome: R-HSA-6804756	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Removal of the Flap Intermediate";"Activation of ATR in response to replication stress";"Gap-filling DNA repair synthesis and ligation in TC-NER";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"Regulation of HSF1-mediated heat shock response";"Formation of Incision Complex in GG-NER";"HDR through Single Strand Annealing (SSA)";"SUMOylation of DNA damage response and repair proteins";"HSF1 activation";"Meiotic recombination";"Dual incision in TC-NER";"Fanconi Anemia Pathway";"Translesion synthesis by POLK";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_107.2	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_7694.1	1	Reactome: R-HSA-162791	"Attachment of GPI anchor to uPAR"
JAMg_model_16038.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_20545.1	4	Reactome: R-HSA-6807062;MetaCyc: PWY-8026;Reactome: R-HSA-6807047;KEGG: 00100+1.3.1.72	"Cholesterol biosynthesis via lathosterol";"Sterol biosynthesis (methylotrophs)";"Cholesterol biosynthesis via desmosterol";"Steroid biosynthesis"
JAMg_model_8435.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_8235.1	12	Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-6804756;Reactome: R-HSA-167200;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167152;Reactome: R-HSA-112382;Reactome: R-HSA-167287	"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Regulation of TP53 Activity through Phosphorylation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV elongation complex in the absence of HIV Tat";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery"
JAMg_model_598.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_15268.3	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_3521.1	8	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-6791226;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Major pathway of rRNA processing in the nucleolus and cytosol";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis"
JAMg_model_9952.1	1	Reactome: R-HSA-1445148	"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_19272.1	2	KEGG: 00340+2.1.1.22;Reactome: R-HSA-70921	"Histidine metabolism";"Histidine catabolism"
JAMg_model_21105.2	4	Reactome: R-HSA-936440;Reactome: R-HSA-5205685;Reactome: R-HSA-1632852;Reactome: R-HSA-8934903	"Negative regulators of DDX58/IFIH1 signaling";"Pink/Parkin Mediated Mitophagy";"Macroautophagy";"Receptor Mediated Mitophagy"
JAMg_model_3454.4	3	Reactome: R-HSA-74217;KEGG: 00230+2.7.1.20;MetaCyc: PWY-6619	"Purine salvage";"Purine metabolism";"Adenine and adenosine salvage VI"
JAMg_model_7849.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_13316.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_18903.1	13	Reactome: R-HSA-71403;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5537;KEGG: 00640+6.2.1.5;KEGG: 00020+6.2.1.5;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-5392;MetaCyc: PWY-6728;MetaCyc: PWY-7384;MetaCyc: PWY-5690;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5538	"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Pyruvate fermentation to acetate V";"Propanoate metabolism";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Reductive TCA cycle II";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"TCA cycle II (plants and fungi)";"C5-Branched dibasic acid metabolism";"Pyruvate fermentation to acetate VI"
JAMg_model_8941.1	7	Reactome: R-HSA-380994;Reactome: R-HSA-426117;Reactome: R-HSA-8963693;Reactome: R-HSA-5619039;Reactome: R-HSA-9633012;Reactome: R-HSA-9648895;KEGG: 00250+6.3.5.4	"ATF4 activates genes in response to endoplasmic reticulum stress";"Cation-coupled Chloride cotransporters";"Aspartate and asparagine metabolism";"Defective SLC12A6 causes agenesis of the corpus callosum, with peripheral neuropathy (ACCPN)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Response of EIF2AK1 (HRI) to heme deficiency";"Alanine, aspartate and glutamate metabolism"
JAMg_model_5764.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_12676.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_1504.1	1	Reactome: R-HSA-5693568	"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_8783.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_11369.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_16020.1	3	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer"
JAMg_model_7092.1	5	Reactome: R-HSA-8964539;MetaCyc: PWY-4981;MetaCyc: PWY-3341;MetaCyc: PWY-6344;KEGG: 00330+1.5.1.2	"Glutamate and glutamine metabolism";"L-proline biosynthesis II (from arginine)";"L-proline biosynthesis III (from L-ornithine)";"L-ornithine degradation II (Stickland reaction)";"Arginine and proline metabolism"
JAMg_model_4892.1	1	Reactome: R-HSA-2564830	"Cytosolic iron-sulfur cluster assembly"
JAMg_model_11451.1	8	KEGG: 00270+1.1.1.27;MetaCyc: PWY-6901;KEGG: 00640+1.1.1.27;Reactome: R-HSA-70268;KEGG: 00010+1.1.1.27;KEGG: 00620+1.1.1.27;MetaCyc: PWY-8086;MetaCyc: PWY-5481	"Cysteine and methionine metabolism";"Superpathway of glucose and xylose degradation";"Propanoate metabolism";"Pyruvate metabolism";"Glycolysis / Gluconeogenesis";"Pyruvate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Pyruvate fermentation to (S)-lactate"
JAMg_model_15065.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_3871.1	6	Reactome: R-HSA-1855183;MetaCyc: PWY-6362;MetaCyc: PWY-6364;KEGG: 04070+3.1.3.56;MetaCyc: PWY-6363;KEGG: 00562+3.1.3.56	"Synthesis of IP2, IP, and Ins in the cytosol";"1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)";"D-myo-inositol (1,3,4)-trisphosphate biosynthesis";"Phosphatidylinositol signaling system";"D-myo-inositol (1,4,5)-trisphosphate degradation";"Inositol phosphate metabolism"
JAMg_model_8463.1	26	Reactome: R-HSA-4615885;Reactome: R-HSA-1362277;Reactome: R-HSA-69205;Reactome: R-HSA-110314;Reactome: R-HSA-174414;Reactome: R-HSA-174411;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-8866654;Reactome: R-HSA-6782135;Reactome: R-HSA-69091;Reactome: R-HSA-5655862;Reactome: R-HSA-174437;Reactome: R-HSA-5358606;Reactome: R-HSA-69183;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-174417;Reactome: R-HSA-6782210;Reactome: R-HSA-69166;Reactome: R-HSA-6804114	"SUMOylation of DNA replication proteins";"Transcription of E2F targets under negative control by DREAM complex";"G1/S-Specific Transcription";"Recognition of DNA damage by PCNA-containing replication complex";"Processive synthesis on the C-strand of the telomere";"Polymerase switching on the C-strand of the telomere";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"E3 ubiquitin ligases ubiquitinate target proteins";"Dual incision in TC-NER";"Polymerase switching";"Translesion synthesis by POLK";"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Processive synthesis on the lagging strand";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Telomere C-strand (Lagging Strand) Synthesis";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Removal of the Flap Intermediate";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest"
JAMg_model_9454.3	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_20489.2	11	Reactome: R-HSA-140534;Reactome: R-HSA-75157;Reactome: R-HSA-933543;Reactome: R-HSA-69416;Reactome: R-HSA-5213460;Reactome: R-HSA-75158;Reactome: R-HSA-2562578;Reactome: R-HSA-5357786;Reactome: R-HSA-3371378;Reactome: R-HSA-5218900;Reactome: R-HSA-9013957	"Caspase activation via Death Receptors in the presence of ligand";"FasL/ CD95L signaling";"NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10";"Dimerization of procaspase-8";"RIPK1-mediated regulated necrosis";"TRAIL signaling";"TRIF-mediated programmed cell death";"TNFR1-induced proapoptotic signaling";"Regulation by c-FLIP";"CASP8 activity is inhibited";"TLR3-mediated TICAM1-dependent programmed cell death"
JAMg_model_7189.6	3	Reactome: R-HSA-416482;Reactome: R-HSA-194840;Reactome: R-HSA-193648	"G alpha (12/13) signalling events";"Rho GTPase cycle";"NRAGE signals death through JNK"
JAMg_model_12121.2	6	Reactome: R-HSA-1483166;Reactome: R-HSA-163560;MetaCyc: PWY-4261;KEGG: 00564+1.1.5.3;MetaCyc: PWY-6952;MetaCyc: PWY-6118	"Synthesis of PA";"Triglyceride catabolism";"Glycerol degradation I";"Glycerophospholipid metabolism";"Glycerophosphodiester degradation";"Glycerol-3-phosphate shuttle"
JAMg_model_8378.1	5	Reactome: R-HSA-6804756;Reactome: R-HSA-5668599;Reactome: R-HSA-6811555;Reactome: R-HSA-936440;Reactome: R-HSA-1169408	"Regulation of TP53 Activity through Phosphorylation";"RHO GTPases Activate NADPH Oxidases";"PI5P Regulates TP53 Acetylation";"Negative regulators of DDX58/IFIH1 signaling";"ISG15 antiviral mechanism"
JAMg_model_12880.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_6140.1	40	KEGG: 00362+4.2.1.17+1.1.1.35;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-7007;MetaCyc: PWY-6944;KEGG: 00903+4.2.1.17;KEGG: 00592+4.2.1.17;MetaCyc: PWY-7401;MetaCyc: PWY-7726;KEGG: 00071+4.2.1.17+1.1.1.35;MetaCyc: PWY-5109;KEGG: 00310+4.2.1.17+1.1.1.35;MetaCyc: PWY-5789;MetaCyc: PWY-7656;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-6883;MetaCyc: PWY-6583;MetaCyc: PWY-5177;MetaCyc: PWY-5138;KEGG: 00410+4.2.1.17;KEGG: 00627+4.2.1.17;KEGG: 00360+4.2.1.17;KEGG: 00623+1.1.1.35;MetaCyc: PWY-1361;MetaCyc: PWY-7216;KEGG: 00720+4.2.1.17+1.1.1.35;KEGG: 00930+4.2.1.17+1.1.1.35;MetaCyc: PWY-7779;MetaCyc: PWY-7606;KEGG: 00640+4.2.1.17;KEGG: 00281+4.2.1.17+1.1.1.35;MetaCyc: PWY-6863;MetaCyc: PWY-6946;MetaCyc: PWY-7094;MetaCyc: PWY-7778;MetaCyc: PWY-6945;MetaCyc: PWY-6435;KEGG: 00650+4.2.1.17+1.1.1.35;MetaCyc: PWY-7654;MetaCyc: PWY-5136;KEGG: 00062+4.2.1.17+1.1.1.35	"Benzoate degradation";"Tryptophan metabolism";"Methyl ketone biosynthesis (engineered)";"Androstenedione degradation";"Limonene and pinene degradation";"alpha-Linolenic acid metabolism";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Fatty acid degradation";"Fermentation to 2-methylbutanoate";"Lysine degradation";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Spodoptera littoralis pheromone biosynthesis";"Valine, leucine and isoleucine degradation";"Pyruvate fermentation to butanol II (engineered)";"Pyruvate fermentation to butanol I";"Glutaryl-coa degradation";"Fatty acid beta-oxidation IV (unsaturated, even number)";"beta-Alanine metabolism";"Aminobenzoate degradation";"Phenylalanine metabolism";"Toluene degradation";"Benzoyl-coa degradation I (aerobic)";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Carbon fixation pathways in prokaryotes";"Caprolactam degradation";"Methyl tert-butyl ether degradation";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Propanoate metabolism";"Geraniol degradation";"Pyruvate fermentation to hexanol (engineered)";"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Fatty acid salvage";"2-methylpropene degradation";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"4-hydroxybenzoate biosynthesis III (plants)";"Butanoate metabolism";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Fatty acid beta-oxidation II (plant peroxisome)";"Fatty acid elongation"
JAMg_model_12354.1	2	Reactome: R-HSA-3299685;MetaCyc: PWY-6854	"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)"
JAMg_model_12693.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_10021.7	4	KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;KEGG: 00053+1.13.99.1;Reactome: R-HSA-1855183	"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Ascorbate and aldarate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol"
JAMg_model_3303.3	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_6331.1	14	Reactome: R-HSA-2467813;Reactome: R-HSA-1632852;Reactome: R-HSA-6807878;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-2132295;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-5620924;Reactome: R-HSA-68877;Reactome: R-HSA-9609690	"Separation of Sister Chromatids";"Macroautophagy";"COPI-mediated anterograde transport";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"MHC class II antigen presentation";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Intraflagellar transport";"Mitotic Prometaphase";"HCMV Early Events"
JAMg_model_7050.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_10887.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_1571.1	3	Reactome: R-HSA-8951664;Reactome: R-HSA-983168;Reactome: R-HSA-390471	"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_2102.2	16	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956	"Viral mRNA Translation";"Peptide chain elongation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_19637.1	1	Reactome: R-HSA-373080	"Class B/2 (Secretin family receptors)"
JAMg_model_3080.3	7	KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1	"Human papillomavirus infection";"Thermogenesis";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection"
JAMg_model_4986.1	29	Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-5358606;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-6782210;Reactome: R-HSA-69166;Reactome: R-HSA-176187;Reactome: R-HSA-912446;Reactome: R-HSA-3108214;Reactome: R-HSA-3371511;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-3371453;Reactome: R-HSA-110314;Reactome: R-HSA-6804756;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-6782135;Reactome: R-HSA-5655862;Reactome: R-HSA-6783310	"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Removal of the Flap Intermediate";"Activation of ATR in response to replication stress";"Meiotic recombination";"SUMOylation of DNA damage response and repair proteins";"HSF1 activation";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Regulation of HSF1-mediated heat shock response";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Dual incision in TC-NER";"Translesion synthesis by POLK";"Fanconi Anemia Pathway"
JAMg_model_10537.1	1	Reactome: R-HSA-9037629	"Lewis blood group biosynthesis"
JAMg_model_11489.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_17907.2	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_16703.1	1	Reactome: R-HSA-3108214	"SUMOylation of DNA damage response and repair proteins"
JAMg_model_13717.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_9243.3	1	Reactome: R-HSA-6785631	"ERBB2 Regulates Cell Motility"
JAMg_model_1964.2	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_7381.2	7	KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-7214;MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824	"Phenylpropanoid biosynthesis";"Betanidin degradation";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis"
JAMg_model_13540.2	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_10881.2	4	Reactome: R-HSA-8934903;Reactome: R-HSA-1632852;Reactome: R-HSA-936440;Reactome: R-HSA-5205685	"Receptor Mediated Mitophagy";"Macroautophagy";"Negative regulators of DDX58/IFIH1 signaling";"Pink/Parkin Mediated Mitophagy"
JAMg_model_12290.1	18	KEGG: 00240+2.7.4.6;MetaCyc: PWY-7210;MetaCyc: PWY-7198;MetaCyc: PWY-7220;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7226;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7197;MetaCyc: PWY-7184;MetaCyc: PWY-7205;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7187;MetaCyc: PWY-7221;MetaCyc: PWY-7227;MetaCyc: PWY-7176;MetaCyc: PWY-7222;MetaCyc: PWY-7224	"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Purine metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotide phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"CMP phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Guanosine ribonucleotides de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis";"UTP and CTP de novo biosynthesis";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Purine deoxyribonucleosides salvage"
JAMg_model_18499.2	2	KEGG: 00970+6.1.1.5;Reactome: R-HSA-379726	"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation"
JAMg_model_13401.1	7	Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-606279;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Deposition of new CENPA-containing nucleosomes at the centromere";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase"
JAMg_model_20384.1	1	Reactome: R-HSA-1614635	"Sulfur amino acid metabolism"
JAMg_model_17042.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_4261.1	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_17943.3	5	Reactome: R-HSA-75035;Reactome: R-HSA-1445148;Reactome: R-HSA-5628897;Reactome: R-HSA-111447;Reactome: R-HSA-5625740	"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"TP53 Regulates Metabolic Genes";"Activation of BAD and translocation to mitochondria";"RHO GTPases activate PKNs"
JAMg_model_13890.1	2	MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4	"Cellulose degradation II (fungi)";"Starch and sucrose metabolism"
JAMg_model_3083.1	3	Reactome: R-HSA-983168;MetaCyc: PWY-7511;Reactome: R-HSA-5689880	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination";"Ub-specific processing proteases"
JAMg_model_16071.4	9	Reactome: R-HSA-5674135;Reactome: R-HSA-9649948;Reactome: R-HSA-114608;Reactome: R-HSA-6798695;Reactome: R-HSA-6802955;Reactome: R-HSA-6802946;Reactome: R-HSA-6802952;Reactome: R-HSA-445355;Reactome: R-HSA-6802948	"MAP2K and MAPK activation";"Signaling downstream of RAS mutants";"Platelet degranulation";"Neutrophil degranulation";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Signaling by moderate kinase activity BRAF mutants";"Signaling by BRAF and RAF fusions";"Smooth Muscle Contraction";"Signaling by high-kinase activity BRAF mutants"
JAMg_model_9900.3	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_11978.4	2	MetaCyc: PWY-7511;Reactome: R-HSA-5689880	"Protein ubiquitination";"Ub-specific processing proteases"
JAMg_model_12510.1	1	Reactome: R-HSA-6803207	"TP53 Regulates Transcription of Caspase Activators and Caspases"
JAMg_model_1124.3	3	Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438	"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic"
JAMg_model_3944.2	2	Reactome: R-HSA-5576886;Reactome: R-HSA-1299308	"Phase 4 - resting membrane potential";"Tandem of pore domain in a weak inwardly rectifying K+ channels (TWIK)"
JAMg_model_17563.2	1	Reactome: R-HSA-6811438	"Intra-Golgi traffic"
JAMg_model_13483.2	16	Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_13183.2	14	Reactome: R-HSA-2022857;Reactome: R-HSA-2024101;MetaCyc: PWY-7883;KEGG: 00513+3.2.1.52;Reactome: R-HSA-1660662;Reactome: R-HSA-194840;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52;KEGG: 00531+3.2.1.52;MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00604+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00603+3.2.1.52	"Keratan sulfate degradation";"CS/DS degradation";"Anhydromuropeptides recycling II";"Various types of N-glycan biosynthesis";"Glycosphingolipid metabolism";"Rho GTPase cycle";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation";"Glycosaminoglycan degradation";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Glycosphingolipid biosynthesis - ganglio series";"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series"
JAMg_model_10149.3	3	Reactome: R-HSA-5579007;KEGG: 00220+3.5.1.14;Reactome: R-HSA-5423646	"Defective ACY1 causes encephalopathy";"Arginine biosynthesis";"Aflatoxin activation and detoxification"
JAMg_model_3430.5	1	Reactome: R-HSA-381038	"XBP1(S) activates chaperone genes"
JAMg_model_2499.1	2	Reactome: R-HSA-6811438;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_13587.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_3525.3	5	Reactome: R-HSA-901042;Reactome: R-HSA-879415;Reactome: R-HSA-532668;Reactome: R-HSA-381426;Reactome: R-HSA-8957275	"Calnexin/calreticulin cycle";"Advanced glycosylation endproduct receptor signaling";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation"
JAMg_model_5890.1	3	Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-112382	"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Formation of RNA Pol II elongation complex"
JAMg_model_9563.3	5	Reactome: R-HSA-390450;Reactome: R-HSA-6814122;Reactome: R-HSA-389960;Reactome: R-HSA-389957;Reactome: R-HSA-390471	"Folding of actin by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Formation of tubulin folding intermediates by CCT/TriC";"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_6599.5	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_10853.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_12508.7	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_11895.5	5	MetaCyc: PWY-7766;Reactome: R-HSA-189451;KEGG: 00860+4.1.1.37;MetaCyc: PWY-5531;MetaCyc: PWY-7159	"Heme b biosynthesis IV (Gram-positive bacteria)";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism";"3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)";"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)"
JAMg_model_9347.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_2481.1	2	Reactome: R-HSA-6783310;Reactome: R-HSA-5693568	"Fanconi Anemia Pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_3063.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_3086.2	14	Reactome: R-HSA-9013700;Reactome: R-HSA-2122948;Reactome: R-HSA-2979096;Reactome: R-HSA-2894862;Reactome: R-HSA-3928665;Reactome: R-HSA-9013507;Reactome: R-HSA-1474228;Reactome: R-HSA-2644606;Reactome: R-HSA-6798695;Reactome: R-HSA-9017802;Reactome: R-HSA-977225;Reactome: R-HSA-1251985;Reactome: R-HSA-205043;Reactome: R-HSA-193692	"NOTCH4 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"EPH-ephrin mediated repulsion of cells";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Degradation of the extracellular matrix";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Neutrophil degranulation";"Noncanonical activation of NOTCH3";"Amyloid fiber formation";"Nuclear signaling by ERBB4";"NRIF signals cell death from the nucleus";"Regulated proteolysis of p75NTR"
JAMg_model_13646.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_5561.3	5	Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288	"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1"
JAMg_model_6910.1	6	Reactome: R-HSA-418592;Reactome: R-HSA-456926;Reactome: R-HSA-428930;Reactome: R-HSA-416476;Reactome: R-HSA-399997;Reactome: R-HSA-434316	"ADP signalling through P2Y purinoceptor 1";"Thrombin signalling through proteinase activated receptors (PARs)";"Thromboxane signalling through TP receptor";"G alpha (q) signalling events";"Acetylcholine regulates insulin secretion";"Fatty Acids bound to GPR40 (FFAR1) regulate insulin secretion"
JAMg_model_1734.1	5	Reactome: R-HSA-165159;Reactome: R-HSA-3371571;Reactome: R-HSA-198323;Reactome: R-HSA-166208;Reactome: R-HSA-5674400	"mTOR signalling";"HSF1-dependent transactivation";"AKT phosphorylates targets in the cytosol";"mTORC1-mediated signalling";"Constitutive Signaling by AKT1 E17K in Cancer"
JAMg_model_8879.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_11704.3	7	KEGG: 00250+2.4.2.14;MetaCyc: PWY-7282;Reactome: R-HSA-73817;MetaCyc: PWY-6122;KEGG: 00230+2.4.2.14;MetaCyc: PWY-6277;MetaCyc: PWY-6121	"Alanine, aspartate and glutamate metabolism";"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"Purine ribonucleoside monophosphate biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis II";"Purine metabolism";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis I"
JAMg_model_19465.1	30	Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-917937;Reactome: R-HSA-8939902;Reactome: R-HSA-1170546;Reactome: R-HSA-5610785;Reactome: R-HSA-187577;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-5676590;Reactome: R-HSA-5610780;Reactome: R-HSA-2122947;Reactome: R-HSA-2644607;Reactome: R-HSA-9604323;Reactome: R-HSA-180534;Reactome: R-HSA-5684264;Reactome: R-HSA-195253;Reactome: R-HSA-2565942;Reactome: R-HSA-69231;Reactome: R-HSA-2644606;Reactome: R-HSA-5607764;Reactome: R-HSA-2894862;Reactome: R-HSA-400253	"Interleukin-1 signaling";"Orc1 removal from chromatin";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Iron uptake and transport";"Regulation of RUNX2 expression and activity";"Prolactin receptor signaling";"GLI3 is processed to GLI3R by the proteasome";"SCF(Skp2)-mediated degradation of p27/p21";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"Degradation of GLI2 by the proteasome";"Neddylation";"NIK-->noncanonical NF-kB signaling";"Degradation of GLI1 by the proteasome";"NOTCH1 Intracellular Domain Regulates Transcription";"Loss of Function of FBXW7 in Cancer and NOTCH1 Signaling";"Negative regulation of NOTCH4 signaling";"Vpu mediated degradation of CD4";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Degradation of beta-catenin by the destruction complex";"Regulation of PLK1 Activity at G2/M Transition";"Cyclin D associated events in G1";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"CLEC7A (Dectin-1) signaling";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Circadian Clock"
JAMg_model_1687.4	16	Reactome: R-HSA-69017;Reactome: R-HSA-176412;Reactome: R-HSA-2559582;Reactome: R-HSA-141430;Reactome: R-HSA-174084;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-176409;Reactome: R-HSA-174184;Reactome: R-HSA-174154;Reactome: R-HSA-176408;Reactome: R-HSA-2467813;Reactome: R-HSA-8853884;Reactome: R-HSA-174178;Reactome: R-HSA-179409;Reactome: R-HSA-983168	"CDK-mediated phosphorylation and removal of Cdc6";"Phosphorylation of the APC/C";"Senescence-Associated Secretory Phenotype (SASP)";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Autodegradation of Cdh1 by Cdh1:APC/C";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of Securin";"Regulation of APC/C activators between G1/S and early anaphase";"Separation of Sister Chromatids";"Transcriptional Regulation by VENTX";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_8694.1	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_2672.2	5	Reactome: R-HSA-3134975;Reactome: R-HSA-3249367;Reactome: R-HSA-3270619;Reactome: R-HSA-6798695;Reactome: R-HSA-1834941	"Regulation of innate immune responses to cytosolic DNA";"STAT6-mediated induction of chemokines";"IRF3-mediated induction of type I IFN";"Neutrophil degranulation";"STING mediated induction of host immune responses"
JAMg_model_18561.1	1	Reactome: R-HSA-418886	"Netrin mediated repulsion signals"
JAMg_model_1730.1	3	Reactome: R-HSA-379716;KEGG: 00970+6.1.1.4;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Selenoamino acid metabolism"
JAMg_model_148.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_8630.1	2	MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4	"Cellulose degradation II (fungi)";"Starch and sucrose metabolism"
JAMg_model_6552.2	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_15508.6	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_1909.5	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_17564.2	7	Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-8854518;Reactome: R-HSA-2565942	"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_15126.5	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_3756.4	6	MetaCyc: PWY-5668;MetaCyc: PWY-5269;MetaCyc: PWY-7817;Reactome: R-HSA-1483166;Reactome: R-HSA-1483148;KEGG: 00564+2.7.8.5	"Cardiolipin biosynthesis I";"Cardiolipin biosynthesis II";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Synthesis of PA";"Synthesis of PG";"Glycerophospholipid metabolism"
JAMg_model_10493.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_8560.2	24	Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-983189	"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Kinesins"
JAMg_model_7500.3	19	MetaCyc: PWY-7007;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7606;MetaCyc: PWY-7726;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7858;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7338;MetaCyc: PWY-7288;MetaCyc: PWY-735;MetaCyc: PWY-7854;MetaCyc: PWY-7291;MetaCyc: PWY-5136;MetaCyc: PWY-7340;MetaCyc: PWY-6920;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6;MetaCyc: PWY-7574;MetaCyc: PWY-7337	"Methyl ketone biosynthesis (engineered)";"Propanoate metabolism";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Fatty acid degradation";"(5Z)-dodecenoate biosynthesis II";"alpha-Linolenic acid metabolism";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Jasmonic acid biosynthesis";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Fatty acid beta-oxidation II (plant peroxisome)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"6-gingerol analog biosynthesis (engineered)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)"
JAMg_model_14518.2	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_8885.3	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_20398.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_10401.3	3	Reactome: R-HSA-5689877;Reactome: R-HSA-5696394;Reactome: R-HSA-5696395	"Josephin domain DUBs";"DNA Damage Recognition in GG-NER";"Formation of Incision Complex in GG-NER"
JAMg_model_9967.1	1	Reactome: R-HSA-2129379	"Molecules associated with elastic fibres"
JAMg_model_8124.3	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_11108.1	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_14654.4	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_19213.1	3	Reactome: R-HSA-6798695;MetaCyc: PWY-6807;KEGG: 00511+3.2.1.51	"Neutrophil degranulation";"Xyloglucan degradation II (exoglucanase)";"Other glycan degradation"
JAMg_model_450.1	1	Reactome: R-HSA-8964038	"LDL clearance"
JAMg_model_11669.1	5	Reactome: R-HSA-74259;Reactome: R-HSA-73621;Reactome: R-HSA-3295583;Reactome: R-HSA-418890;Reactome: R-HSA-196807	"Purine catabolism";"Pyrimidine catabolism";"TRP channels";"Role of second messengers in netrin-1 signaling";"Nicotinate metabolism"
JAMg_model_13624.2	4	Reactome: R-HSA-8856825;Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-5696394	"Cargo recognition for clathrin-mediated endocytosis";"Formation of TC-NER Pre-Incision Complex";"Neddylation";"DNA Damage Recognition in GG-NER"
JAMg_model_6411.2	2	Reactome: R-HSA-8866654;MetaCyc: PWY-7511	"E3 ubiquitin ligases ubiquitinate target proteins";"Protein ubiquitination"
JAMg_model_18568.1	2	Reactome: R-HSA-2206307;Reactome: R-HSA-2024096	"MPS IIIA - Sanfilippo syndrome A";"HS-GAG degradation"
JAMg_model_480.5	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_17734.3	5	KEGG: 00860+4.2.1.24;MetaCyc: PWY-5188;Reactome: R-HSA-6798695;MetaCyc: PWY-5189;Reactome: R-HSA-189451	"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)";"Neutrophil degranulation";"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis"
JAMg_model_4033.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_14591.2	22	Reactome: R-HSA-432142;Reactome: R-HSA-5339716;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-195253;Reactome: R-HSA-6811558;Reactome: R-HSA-196299;Reactome: R-HSA-5673000;Reactome: R-HSA-5467340;Reactome: R-HSA-389513;Reactome: R-HSA-5467348;Reactome: R-HSA-5358752;Reactome: R-HSA-68877;Reactome: R-HSA-5467337;Reactome: R-HSA-5675221;Reactome: R-HSA-5358749;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-5358751;Reactome: R-HSA-4641262;Reactome: R-HSA-2467813;Reactome: R-HSA-5358747	"Platelet sensitization by LDL";"Misspliced GSK3beta mutants stabilize beta-catenin";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Degradation of beta-catenin by the destruction complex";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Beta-catenin phosphorylation cascade";"RAF activation";"AXIN missense mutants destabilize the destruction complex";"CTLA4 inhibitory signaling";"Truncations of AMER1 destabilize the destruction complex";"T41 mutants of beta-catenin aren't phosphorylated";"Mitotic Prometaphase";"APC truncation mutants have impaired AXIN binding";"Negative regulation of MAPK pathway";"S37 mutants of beta-catenin aren't phosphorylated";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"S45 mutants of beta-catenin aren't phosphorylated";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"Separation of Sister Chromatids";"S33 mutants of beta-catenin aren't phosphorylated"
JAMg_model_10447.1	1	Reactome: R-HSA-5663220	"RHO GTPases Activate Formins"
JAMg_model_19402.1	4	Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-3928662;Reactome: R-HSA-8856828	"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"EPHB-mediated forward signaling";"Clathrin-mediated endocytosis"
JAMg_model_8711.1	14	Reactome: R-HSA-426496;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-203927;Reactome: R-HSA-8948700;Reactome: R-HSA-9029569;Reactome: R-HSA-426486;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593	"Post-transcriptional silencing by small RNAs";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"MicroRNA (miRNA) biogenesis";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Small interfering RNA (siRNA) biogenesis";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity"
JAMg_model_7723.2	3	Reactome: R-HSA-420029;MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Tight junction interactions";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_20857.2	14	KEGG: 00770+2.6.1.42;KEGG: 00290+2.6.1.42;Reactome: R-HSA-70895;KEGG: 00280+2.6.1.42;MetaCyc: PWY-7767;MetaCyc: PWY-5104;MetaCyc: PWY-5078;KEGG: 00966+2.6.1.42;MetaCyc: PWY-5103;KEGG: 00270+2.6.1.42;MetaCyc: PWY-5108;MetaCyc: PWY-5101;MetaCyc: PWY-5076;MetaCyc: PWY-5057	"Pantothenate and CoA biosynthesis";"Valine, leucine and isoleucine biosynthesis";"Branched-chain amino acid catabolism";"Valine, leucine and isoleucine degradation";"L-leucine degradation IV (Stickland reaction)";"L-isoleucine biosynthesis IV";"L-isoleucine degradation II";"Glucosinolate biosynthesis";"L-isoleucine biosynthesis III";"Cysteine and methionine metabolism";"L-isoleucine biosynthesis V";"L-isoleucine biosynthesis II";"L-leucine degradation III";"L-valine degradation II"
JAMg_model_11108.2	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_5284.4	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_16435.1	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Peptide chain elongation";"Viral mRNA Translation";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_20500.1	2	Reactome: R-HSA-2151201;KEGG: 00760+2.3.1.286	"Transcriptional activation of mitochondrial biogenesis";"Nicotinate and nicotinamide metabolism"
JAMg_model_11229.1	9	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-5674400;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-198323;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"Constitutive Signaling by AKT1 E17K in Cancer";"Human papillomavirus infection";"Thermogenesis";"Human cytomegalovirus infection";"AKT phosphorylates targets in the cytosol";"Human immunodeficiency virus 1 infection"
JAMg_model_14445.2	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_13429.1	1	Reactome: R-HSA-77108	"Utilization of Ketone Bodies"
JAMg_model_1151.7	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_4426.2	2	Reactome: R-HSA-8949215;Reactome: R-HSA-983231	"Mitochondrial calcium ion transport";"Factors involved in megakaryocyte development and platelet production"
JAMg_model_3318.2	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_9775.1	5	Reactome: R-HSA-427413;Reactome: R-HSA-5250924;Reactome: R-HSA-73863;Reactome: R-HSA-73762;Reactome: R-HSA-73772	"NoRC negatively regulates rRNA expression";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation";"RNA Polymerase I Promoter Escape"
JAMg_model_6599.3	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_1710.1	56	Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-174084	"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"UCH proteinases";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C"
JAMg_model_7752.2	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_5146.1	2	Reactome: R-HSA-2151201;Reactome: R-HSA-1989781	"Transcriptional activation of mitochondrial biogenesis";"PPARA activates gene expression"
JAMg_model_11303.1	2	Reactome: R-HSA-418457;Reactome: R-HSA-4086398	"cGMP effects";"Ca2+ pathway"
JAMg_model_13506.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_10134.7	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_8550.6	14	MetaCyc: PWY-5972;MetaCyc: PWY-7035;Reactome: R-HSA-75876;MetaCyc: PWY-8041;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7725;MetaCyc: PWY-5080;MetaCyc: PWY-7724;MetaCyc: PWY-7601	"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Fatty acid elongation";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)"
JAMg_model_10639.1	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_216.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_18918.1	3	KEGG: 00620+4.4.1.5;MetaCyc: PWY-5386;Reactome: R-HSA-70268	"Pyruvate metabolism";"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_7604.1	7	Reactome: R-HSA-69202;Reactome: R-HSA-156711;Reactome: R-HSA-1538133;Reactome: R-HSA-69656;Reactome: R-HSA-1362300;Reactome: R-HSA-69205;Reactome: R-HSA-1362277	"Cyclin E associated events during G1/S transition";"Polo-like kinase mediated events";"G0 and Early G1";"Cyclin A:Cdk2-associated events at S phase entry";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"G1/S-Specific Transcription";"Transcription of E2F targets under negative control by DREAM complex"
JAMg_model_6621.1	25	Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-6811434;Reactome: R-HSA-380270;Reactome: R-HSA-8955332;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"COPI-dependent Golgi-to-ER retrograde traffic";"Recruitment of mitotic centrosome proteins and complexes";"Carboxyterminal post-translational modifications of tubulin";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Kinesins";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"HCMV Early Events";"Mitotic Prometaphase";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation"
JAMg_model_6961.1	2	Reactome: R-HSA-2672351;KEGG: 00970+6.1.1.3	"Stimuli-sensing channels";"Aminoacyl-tRNA biosynthesis"
JAMg_model_3020.2	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_15390.3	33	Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-68877;Reactome: R-HSA-168276;Reactome: R-HSA-159227;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-4551638;Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-1169408;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333	"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Mitotic Prometaphase";"NS1 Mediated Effects on Host Pathways";"Transport of the SLBP independent Mature mRNA";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of chromatin organization proteins";"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"ISG15 antiviral mechanism";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery"
JAMg_model_8172.1	2	Reactome: R-HSA-75105;KEGG: 00062+3.1.2.22	"Fatty acyl-CoA biosynthesis";"Fatty acid elongation"
JAMg_model_8212.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_4173.1	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_3184.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_12588.1	13	Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-177504;Reactome: R-HSA-8964038;Reactome: R-HSA-3928665;Reactome: R-HSA-182218;Reactome: R-HSA-8866427;Reactome: R-HSA-416993;Reactome: R-HSA-2132295;Reactome: R-HSA-167590;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825;Reactome: R-HSA-437239	"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Retrograde neurotrophin signalling";"LDL clearance";"EPH-ephrin mediated repulsion of cells";"Nef Mediated CD8 Down-regulation";"VLDLR internalisation and degradation";"Trafficking of GluR2-containing AMPA receptors";"MHC class II antigen presentation";"Nef Mediated CD4 Down-regulation";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis";"Recycling pathway of L1"
JAMg_model_8302.1	2	Reactome: R-HSA-6803157;Reactome: R-HSA-156588	"Antimicrobial peptides";"Glucuronidation"
JAMg_model_20463.1	7	MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-7445	"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation"
JAMg_model_20944.1	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_9819.2	6	Reactome: R-HSA-8868766;MetaCyc: PWY-6829;Reactome: R-HSA-6787450;Reactome: R-HSA-6785470;MetaCyc: PWY-7285;MetaCyc: PWY-7286	"rRNA processing in the mitochondrion";"Trna methylation (yeast)";"tRNA modification in the mitochondrion";"tRNA processing in the mitochondrion";"Methylwyosine biosynthesis";"7-(3-amino-3-carboxypropyl)-wyosine biosynthesis"
JAMg_model_15284.1	12	MetaCyc: PWY-7230;MetaCyc: PWY-6708;MetaCyc: PWY-5855;MetaCyc: PWY-5873;MetaCyc: PWY-5871;KEGG: 00130+2.1.1.222+2.1.1.64;MetaCyc: PWY-5872;Reactome: R-HSA-2142789;MetaCyc: PWY-5870;MetaCyc: PWY-5856;MetaCyc: PWY-5857;MetaCyc: PWY-7233	"Ubiquinol-6 biosynthesis from 4-aminobenzoate (yeast)";"Ubiquinol-8 biosynthesis (prokaryotic)";"Ubiquinol-7 biosynthesis (prokaryotic)";"Ubiquinol-7 biosynthesis (eukaryotic)";"Ubiquinol-9 biosynthesis (eukaryotic)";"Ubiquinone and other terpenoid-quinone biosynthesis";"Ubiquinol-10 biosynthesis (eukaryotic)";"Ubiquinol biosynthesis";"Ubiquinol-8 biosynthesis (eukaryotic)";"Ubiquinol-9 biosynthesis (prokaryotic)";"Ubiquinol-10 biosynthesis (prokaryotic)";"Ubiquinol-6 bypass biosynthesis (eukaryotic)"
JAMg_model_20205.1	2	KEGG: 00620+3.6.1.7;KEGG: 00627+3.6.1.7	"Pyruvate metabolism";"Aminobenzoate degradation"
JAMg_model_13220.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4282.1	4	Reactome: R-HSA-1614558;KEGG: 00270+1.13.11.20;MetaCyc: PWY-5331;KEGG: 00430+1.13.11.20	"Degradation of cysteine and homocysteine";"Cysteine and methionine metabolism";"Taurine biosynthesis I";"Taurine and hypotaurine metabolism"
JAMg_model_14494.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_5645.2	1	Reactome: R-HSA-162791	"Attachment of GPI anchor to uPAR"
JAMg_model_13521.3	8	Reactome: R-HSA-442720;Reactome: R-HSA-164378;Reactome: R-HSA-983231;Reactome: R-HSA-381676;Reactome: R-HSA-432040;Reactome: R-HSA-163615;Reactome: R-HSA-180024;Reactome: R-HSA-5610787	"CREB1 phosphorylation through the activation of Adenylate Cyclase";"PKA activation in glucagon signalling";"Factors involved in megakaryocyte development and platelet production";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Vasopressin regulates renal water homeostasis via Aquaporins";"PKA activation";"DARPP-32 events";"Hedgehog 'off' state"
JAMg_model_17698.1	1	Reactome: R-HSA-163765	"ChREBP activates metabolic gene expression"
JAMg_model_10193.1	3	Reactome: R-HSA-9018519;Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"Estrogen-dependent gene expression";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_15852.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_17133.1	33	Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-5663220;Reactome: R-HSA-159236;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-3232142;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-68877;Reactome: R-HSA-168276;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-159227;Reactome: R-HSA-4551638;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-1169408;Reactome: R-HSA-168333;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690	"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"RHO GTPases Activate Formins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Transcriptional regulation by small RNAs";"SUMOylation of ubiquitinylation proteins";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Mitotic Prometaphase";"NS1 Mediated Effects on Host Pathways";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of the SLBP independent Mature mRNA";"SUMOylation of chromatin organization proteins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"ISG15 antiviral mechanism";"NEP/NS2 Interacts with the Cellular Export Machinery";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events"
JAMg_model_1629.4	2	Reactome: R-HSA-877300;Reactome: R-HSA-2132295	"Interferon gamma signaling";"MHC class II antigen presentation"
JAMg_model_18382.1	2	Reactome: R-HSA-72702;Reactome: R-HSA-72706	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_20577.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_7995.5	2	Reactome: R-HSA-1296052;Reactome: R-HSA-418457	"Ca2+ activated K+ channels";"cGMP effects"
JAMg_model_15769.1	1	Reactome: R-HSA-975578	"Reactions specific to the complex N-glycan synthesis pathway"
JAMg_model_3072.1	2	Reactome: R-HSA-167827;Reactome: R-HSA-167826	"The proton buffering model";"The fatty acid cycling model"
JAMg_model_19440.1	7	KEGG: 04070+3.1.4.11;MetaCyc: PWY-6351;MetaCyc: PWY-7039;MetaCyc: PWY-8052;KEGG: 00562+3.1.4.11;Reactome: R-HSA-1855204;MetaCyc: PWY-6367	"Phosphatidylinositol signaling system";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Phosphatidate metabolism, as a signaling molecule";"2-arachidonoylglycerol biosynthesis";"Inositol phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism"
JAMg_model_5874.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_12573.1	18	KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-6728;MetaCyc: PWY-5392;KEGG: 00630+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-7115;KEGG: 00710+1.1.1.37;MetaCyc: PWY-1622;MetaCyc: PWY-5690;Reactome: R-HSA-70263;MetaCyc: PWY-7383;KEGG: 00020+1.1.1.37;MetaCyc: PWY-561;KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37;MetaCyc: PWY-5913;MetaCyc: PWY-6969	"Pyruvate metabolism";"Methane metabolism";"Methylaspartate cycle";"Reductive TCA cycle II";"Glyoxylate and dicarboxylate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation I (serine pathway)";"TCA cycle II (plants and fungi)";"Gluconeogenesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"Citrate cycle (TCA cycle)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_9310.4	4	Reactome: R-HSA-499943;Reactome: R-HSA-2161541;MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Interconversion of nucleotide di- and triphosphates";"Abacavir metabolism";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_11395.2	2	Reactome: R-HSA-8964539;Reactome: R-HSA-2151201	"Glutamate and glutamine metabolism";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_1985.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_16345.1	2	Reactome: R-HSA-6784531;Reactome: R-HSA-6791226	"tRNA processing in the nucleus";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_19616.1	3	MetaCyc: PWY-5491;KEGG: 00730+3.1.3.1;KEGG: 00790+3.1.3.1	"Diethylphosphate degradation";"Thiamine metabolism";"Folate biosynthesis"
JAMg_model_11967.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_15508.3	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_15941.1	1	Reactome: R-HSA-376172	"DSCAM interactions"
JAMg_model_13958.1	2	Reactome: R-HSA-3214841;Reactome: R-HSA-8936459	"PKMTs methylate histone lysines";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function"
JAMg_model_18681.6	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_11277.1	3	Reactome: R-HSA-5423646;MetaCyc: PWY-7533;Reactome: R-HSA-2142691	"Aflatoxin activation and detoxification";"Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_21247.2	4	Reactome: R-HSA-5694530;Reactome: R-HSA-204005;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695	"Cargo concentration in the ER";"COPII-mediated vesicle transport";"MHC class II antigen presentation";"Neutrophil degranulation"
JAMg_model_7683.1	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_20594.1	10	Reactome: R-HSA-427413;Reactome: R-HSA-9022538;Reactome: R-HSA-983231;Reactome: R-HSA-9022699;Reactome: R-HSA-9022702;Reactome: R-HSA-9615017;Reactome: R-HSA-8936459;Reactome: R-HSA-400206;Reactome: R-HSA-3899300;Reactome: R-HSA-9022692	"NoRC negatively regulates rRNA expression";"Loss of MECP2 binding ability to 5mC-DNA";"Factors involved in megakaryocyte development and platelet production";"MECP2 regulates neuronal receptors and channels";"MECP2 regulates transcription of neuronal ligands";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Regulation of lipid metabolism by PPARalpha";"SUMOylation of transcription cofactors";"Regulation of MECP2 expression and activity"
JAMg_model_1522.1	2	Reactome: R-HSA-3214847;Reactome: R-HSA-171319	"HATs acetylate histones";"Telomere Extension By Telomerase"
JAMg_model_13538.1	4	Reactome: R-HSA-1799339;Reactome: R-HSA-381771;Reactome: R-HSA-422085;Reactome: R-HSA-400511	"SRP-dependent cotranslational protein targeting to membrane";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"Synthesis, secretion, and deacylation of Ghrelin";"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)"
JAMg_model_11252.6	9	KEGG: 00564+1.1.1.8;KEGG: 00564+1.1.1.94;MetaCyc: PWY-7385;MetaCyc: PWY-7411;Reactome: R-HSA-1483166;MetaCyc: PWY-5667;MetaCyc: PWY-7902;MetaCyc: PWY-6118;MetaCyc: PWY-5981	"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"1,3-propanediol biosynthesis (engineered)";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"CDP-diacylglycerol biosynthesis I";"Glucosylglycerol biosynthesis";"Glycerol-3-phosphate shuttle";"CDP-diacylglycerol biosynthesis III"
JAMg_model_2448.1	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_10689.2	6	Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-6791226;Reactome: R-HSA-450385;Reactome: R-HSA-380994;Reactome: R-HSA-450513	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Major pathway of rRNA processing in the nucleolus and cytosol";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA"
JAMg_model_8637.1	4	KEGG: 00513+2.4.1.261;Reactome: R-HSA-4720454;Reactome: R-HSA-446193;KEGG: 00510+2.4.1.259+2.4.1.261	"Various types of N-glycan biosynthesis";"Defective ALG9 causes ALG9-CDG (CDG-1l)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"N-Glycan biosynthesis"
JAMg_model_17365.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_14651.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_12385.1	1	Reactome: R-HSA-435368	"Zinc efflux and compartmentalization by the SLC30 family"
JAMg_model_10807.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_17671.1	3	Reactome: R-HSA-193648;Reactome: R-HSA-194840;Reactome: R-HSA-416482	"NRAGE signals death through JNK";"Rho GTPase cycle";"G alpha (12/13) signalling events"
JAMg_model_10992.8	2	Reactome: R-HSA-3299685;MetaCyc: PWY-6854	"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)"
JAMg_model_5921.2	6	Reactome: R-HSA-390471;Reactome: R-HSA-389957;Reactome: R-HSA-389960;Reactome: R-HSA-5620922;Reactome: R-HSA-6814122;Reactome: R-HSA-390450	"Association of TriC/CCT with target proteins during biosynthesis";"Prefoldin mediated transfer of substrate to CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Folding of actin by CCT/TriC"
JAMg_model_15724.1	3	Reactome: R-HSA-1442490;Reactome: R-HSA-1592389;Reactome: R-HSA-1474228	"Collagen degradation";"Activation of Matrix Metalloproteinases";"Degradation of the extracellular matrix"
JAMg_model_2208.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_20857.1	14	MetaCyc: PWY-5104;MetaCyc: PWY-7767;KEGG: 00290+2.6.1.42;Reactome: R-HSA-70895;KEGG: 00280+2.6.1.42;KEGG: 00770+2.6.1.42;MetaCyc: PWY-5078;KEGG: 00270+2.6.1.42;KEGG: 00966+2.6.1.42;MetaCyc: PWY-5103;MetaCyc: PWY-5057;MetaCyc: PWY-5076;MetaCyc: PWY-5101;MetaCyc: PWY-5108	"L-isoleucine biosynthesis IV";"L-leucine degradation IV (Stickland reaction)";"Valine, leucine and isoleucine biosynthesis";"Branched-chain amino acid catabolism";"Valine, leucine and isoleucine degradation";"Pantothenate and CoA biosynthesis";"L-isoleucine degradation II";"Cysteine and methionine metabolism";"Glucosinolate biosynthesis";"L-isoleucine biosynthesis III";"L-valine degradation II";"L-leucine degradation III";"L-isoleucine biosynthesis II";"L-isoleucine biosynthesis V"
JAMg_model_20594.3	10	Reactome: R-HSA-9022699;Reactome: R-HSA-9022702;Reactome: R-HSA-983231;Reactome: R-HSA-427413;Reactome: R-HSA-9022538;Reactome: R-HSA-9022692;Reactome: R-HSA-3899300;Reactome: R-HSA-8936459;Reactome: R-HSA-9615017;Reactome: R-HSA-400206	"MECP2 regulates neuronal receptors and channels";"MECP2 regulates transcription of neuronal ligands";"Factors involved in megakaryocyte development and platelet production";"NoRC negatively regulates rRNA expression";"Loss of MECP2 binding ability to 5mC-DNA";"Regulation of MECP2 expression and activity";"SUMOylation of transcription cofactors";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Regulation of lipid metabolism by PPARalpha"
JAMg_model_8897.1	3	Reactome: R-HSA-6799198;Reactome: R-HSA-611105;Reactome: R-HSA-1268020	"Complex I biogenesis";"Respiratory electron transport";"Mitochondrial protein import"
JAMg_model_6264.1	12	KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;MetaCyc: PWY-7416;MetaCyc: PWY-6803;MetaCyc: PWY-7409;KEGG: 00590+3.1.1.4;MetaCyc: PWY-8053;KEGG: 00591+3.1.1.4;KEGG: 00564+3.1.1.4;MetaCyc: PWY-8051;MetaCyc: PWY-7783;KEGG: 00592+3.1.1.4	"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Phosphatidylcholine acyl editing";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Arachidonic acid metabolism";"Anandamide biosynthesis II";"Linoleic acid metabolism";"Glycerophospholipid metabolism";"Anandamide biosynthesis I";"Plasmalogen degradation";"alpha-Linolenic acid metabolism"
JAMg_model_850.1	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_11463.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_6585.1	7	Reactome: R-HSA-5696395;Reactome: R-HSA-5685939;Reactome: R-HSA-5696400;Reactome: R-HSA-110362;Reactome: R-HSA-5696394;Reactome: R-HSA-2173795;Reactome: R-HSA-3108214	"Formation of Incision Complex in GG-NER";"HDR through MMEJ (alt-NHEJ)";"Dual Incision in GG-NER";"POLB-Dependent Long Patch Base Excision Repair";"DNA Damage Recognition in GG-NER";"Downregulation of SMAD2/3:SMAD4 transcriptional activity";"SUMOylation of DNA damage response and repair proteins"
JAMg_model_18110.2	14	MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-5080;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7725;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7619;KEGG: 00062+2.3.1.199;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-5972;MetaCyc: PWY-7035	"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Fatty acid elongation";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis"
JAMg_model_8298.13	4	Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837;Reactome: R-HSA-1912420	"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases";"Pre-NOTCH Processing in Golgi"
JAMg_model_4958.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_7979.1	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_20430.3	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_1106.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_11820.1	5	Reactome: R-HSA-389957;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-6814122	"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_3505.2	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_9396.2	2	Reactome: R-HSA-202733;Reactome: R-HSA-416993	"Cell surface interactions at the vascular wall";"Trafficking of GluR2-containing AMPA receptors"
JAMg_model_9544.1	1	Reactome: R-HSA-6804760	"Regulation of TP53 Activity through Methylation"
JAMg_model_12664.1	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_11784.1	2	Reactome: R-HSA-975957;Reactome: R-HSA-9010553	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs"
JAMg_model_5689.3	2	Reactome: R-HSA-191859;Reactome: R-HSA-6807505	"snRNP Assembly";"RNA polymerase II transcribes snRNA genes"
JAMg_model_6780.1	5	Reactome: R-HSA-3769402;Reactome: R-HSA-3214841;Reactome: R-HSA-201722;Reactome: R-HSA-5617472;Reactome: R-HSA-8936459	"Deactivation of the beta-catenin transactivating complex";"PKMTs methylate histone lysines";"Formation of the beta-catenin:TCF transactivating complex";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function"
JAMg_model_14657.2	4	Reactome: R-HSA-8939211;Reactome: R-HSA-3371497;Reactome: R-HSA-9018519;Reactome: R-HSA-3371568	"ESR-mediated signaling";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Estrogen-dependent gene expression";"Attenuation phase"
JAMg_model_12160.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_6952.1	6	Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68949;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68867	"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Orc1 removal from chromatin";"Unwinding of DNA";"Activation of the pre-replicative complex";"Assembly of the pre-replicative complex"
JAMg_model_11140.1	16	Reactome: R-HSA-2559582;Reactome: R-HSA-141430;Reactome: R-HSA-176412;Reactome: R-HSA-69017;Reactome: R-HSA-176409;Reactome: R-HSA-174184;Reactome: R-HSA-174084;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-8853884;Reactome: R-HSA-174178;Reactome: R-HSA-2467813;Reactome: R-HSA-176408;Reactome: R-HSA-174154;Reactome: R-HSA-983168;Reactome: R-HSA-179409	"Senescence-Associated Secretory Phenotype (SASP)";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Phosphorylation of the APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Autodegradation of Cdh1 by Cdh1:APC/C";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"Transcriptional Regulation by VENTX";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Separation of Sister Chromatids";"Regulation of APC/C activators between G1/S and early anaphase";"APC/C:Cdc20 mediated degradation of Securin";"Antigen processing: Ubiquitination & Proteasome degradation";"APC-Cdc20 mediated degradation of Nek2A"
JAMg_model_1482.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_2111.1	5	MetaCyc: PWY-7177;Reactome: R-HSA-499943;MetaCyc: PWY-7185;KEGG: 00240+6.3.4.2;MetaCyc: PWY-7176	"UTP and CTP dephosphorylation II";"Interconversion of nucleotide di- and triphosphates";"UTP and CTP dephosphorylation I";"Pyrimidine metabolism";"UTP and CTP de novo biosynthesis"
JAMg_model_20334.7	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_12721.1	6	Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase"
JAMg_model_8560.1	24	Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-983189;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497	"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"Kinesins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)"
JAMg_model_18895.1	1	Reactome: R-HSA-901032	"ER Quality Control Compartment (ERQC)"
JAMg_model_12988.1	2	Reactome: R-HSA-189085;KEGG: 00500+3.2.1.28	"Digestion of dietary carbohydrate";"Starch and sucrose metabolism"
JAMg_model_4168.1	22	MetaCyc: PWY-5080;MetaCyc: PWY-7049;MetaCyc: PWY-7602;MetaCyc: PWY-6433;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7053;MetaCyc: PWY-5353;MetaCyc: PWY-7606;MetaCyc: PWY-6958;MetaCyc: PWY-7726;MetaCyc: PWY-7035;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7727;MetaCyc: PWY-7592;MetaCyc: PWY-7725;MetaCyc: PWY-7601;MetaCyc: PWY-7724;Reactome: R-HSA-75876;MetaCyc: PWY-7619;MetaCyc: PWY-7728;MetaCyc: PWY-8041	"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Fatty acid elongation";"Docosahexaenoate biosynthesis I (lower eukaryotes)";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(9Z)-tricosene biosynthesis";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Synthesis of very long-chain fatty acyl-CoAs";"Juniperonate biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Ultra-long-chain fatty acid biosynthesis"
JAMg_model_17937.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_3949.1	2	Reactome: R-HSA-381038;Reactome: R-HSA-1799339	"XBP1(S) activates chaperone genes";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_19308.1	16	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957	"Viral mRNA Translation";"Peptide chain elongation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_2960.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_9837.1	8	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-9633012;KEGG: 04926+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Relaxin signaling pathway";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection"
JAMg_model_3080.1	7	KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04150+2.7.11.1	"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"mTOR signaling pathway"
JAMg_model_3435.3	6	Reactome: R-HSA-6791226;Reactome: R-HSA-450513;Reactome: R-HSA-380994;Reactome: R-HSA-450385;Reactome: R-HSA-450604;Reactome: R-HSA-429958	"Major pathway of rRNA processing in the nucleolus and cytosol";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_15087.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_17561.1	6	Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion"
JAMg_model_11061.1	1	Reactome: R-HSA-5693568	"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_11511.1	7	Reactome: R-HSA-8964539;KEGG: 00250+3.5.1.2;Reactome: R-HSA-5628897;Reactome: R-HSA-210500;MetaCyc: PWY-5921;KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2	"Glutamate and glutamine metabolism";"Alanine, aspartate and glutamate metabolism";"TP53 Regulates Metabolic Genes";"Glutamate Neurotransmitter Release Cycle";"Glutaminyl-trnagln biosynthesis via transamidation";"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism"
JAMg_model_148.3	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_18499.1	2	KEGG: 00970+6.1.1.5;Reactome: R-HSA-379726	"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation"
JAMg_model_10036.1	4	Reactome: R-HSA-446193;Reactome: R-HSA-4720475;KEGG: 00513+2.4.1.258;KEGG: 00510+2.4.1.258	"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG3 causes ALG3-CDG (CDG-1d)";"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis"
JAMg_model_1970.4	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_7282.1	24	Reactome: R-HSA-163358;Reactome: R-HSA-9634600;Reactome: R-HSA-5610787;Reactome: R-HSA-8853659;Reactome: R-HSA-163560;Reactome: R-HSA-432040;Reactome: R-HSA-9010642;Reactome: R-HSA-442720;Reactome: R-HSA-164378;Reactome: R-HSA-8963896;Reactome: R-HSA-381676;Reactome: R-HSA-163615;Reactome: R-HSA-4420097;Reactome: R-HSA-180024;Reactome: R-HSA-392517;Reactome: R-HSA-5687128;Reactome: R-HSA-111931;KEGG: 04150+2.7.11.11;Reactome: R-HSA-5610785;Reactome: R-HSA-5621575;Reactome: R-HSA-5610780;Reactome: R-HSA-983231;Reactome: R-HSA-5610783;Reactome: R-HSA-422356	"PKA-mediated phosphorylation of key metabolic factors";"Regulation of glycolysis by fructose 2,6-bisphosphate metabolism";"Hedgehog 'off' state";"RET signaling";"Triglyceride catabolism";"Vasopressin regulates renal water homeostasis via Aquaporins";"ROBO receptors bind AKAP5";"CREB1 phosphorylation through the activation of Adenylate Cyclase";"PKA activation in glucagon signalling";"HDL assembly";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"PKA activation";"VEGFA-VEGFR2 Pathway";"DARPP-32 events";"Rap1 signalling";"MAPK6/MAPK4 signaling";"PKA-mediated phosphorylation of CREB";"mTOR signaling pathway";"GLI3 is processed to GLI3R by the proteasome";"CD209 (DC-SIGN) signaling";"Degradation of GLI1 by the proteasome";"Factors involved in megakaryocyte development and platelet production";"Degradation of GLI2 by the proteasome";"Regulation of insulin secretion"
JAMg_model_1574.1	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_8725.1	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_13027.1	7	Reactome: R-HSA-2122948;Reactome: R-HSA-2660826;Reactome: R-HSA-1442490;Reactome: R-HSA-2894862;Reactome: R-HSA-177929;Reactome: R-HSA-2644606;Reactome: R-HSA-2691232	"Activated NOTCH1 Transmits Signal to the Nucleus";"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Collagen degradation";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Signaling by EGFR";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD Domain Mutants"
JAMg_model_17427.1	3	Reactome: R-HSA-6798695;Reactome: R-HSA-202427;Reactome: R-HSA-6807004	"Neutrophil degranulation";"Phosphorylation of CD3 and TCR zeta chains";"Negative regulation of MET activity"
JAMg_model_12646.1	2	Reactome: R-HSA-8949664;Reactome: R-HSA-8949215	"Processing of SMDT1";"Mitochondrial calcium ion transport"
JAMg_model_20707.2	7	KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04151+2.7.11.1	"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"mTOR signaling pathway";"Human cytomegalovirus infection";"PI3K-Akt signaling pathway"
JAMg_model_10246.5	13	KEGG: 00513+3.2.1.52;Reactome: R-HSA-1660662;MetaCyc: PWY-7883;Reactome: R-HSA-2022857;Reactome: R-HSA-2024101;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;KEGG: 00603+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00604+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52	"Various types of N-glycan biosynthesis";"Glycosphingolipid metabolism";"Anhydromuropeptides recycling II";"Keratan sulfate degradation";"CS/DS degradation";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - ganglio series";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation"
JAMg_model_13380.2	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_6835.2	2	Reactome: R-HSA-5658442;Reactome: R-HSA-6802953	"Regulation of RAS by GAPs";"RAS signaling downstream of NF1 loss-of-function variants"
JAMg_model_8106.1	4	Reactome: R-HSA-112043;Reactome: R-HSA-202040;Reactome: R-HSA-6814122;Reactome: R-HSA-418594	"PLC beta mediated events";"G-protein activation";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"G alpha (i) signalling events"
JAMg_model_13244.2	7	Reactome: R-HSA-8964539;Reactome: R-HSA-5628897;KEGG: 00250+3.5.1.2;MetaCyc: PWY-5921;Reactome: R-HSA-210500;KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2	"Glutamate and glutamine metabolism";"TP53 Regulates Metabolic Genes";"Alanine, aspartate and glutamate metabolism";"Glutaminyl-trnagln biosynthesis via transamidation";"Glutamate Neurotransmitter Release Cycle";"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism"
JAMg_model_16999.2	8	Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-165159;Reactome: R-HSA-3371571;Reactome: R-HSA-380972;Reactome: R-HSA-166208;Reactome: R-HSA-5628897;Reactome: R-HSA-9639288	"Regulation of PTEN gene transcription";"Macroautophagy";"mTOR signalling";"HSF1-dependent transactivation";"Energy dependent regulation of mTOR by LKB1-AMPK";"mTORC1-mediated signalling";"TP53 Regulates Metabolic Genes";"Amino acids regulate mTORC1"
JAMg_model_18156.2	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_15870.6	8	KEGG: 00052+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1	"Galactose metabolism";"Fructose and mannose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Streptomycin biosynthesis";"Starch and sucrose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_4405.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-2022377	"Neutrophil degranulation";"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_3208.2	5	Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-77595;Reactome: R-HSA-159231;Reactome: R-HSA-73856	"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Processing of Intronless Pre-mRNAs";"Transport of Mature mRNA Derived from an Intronless Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_8393.4	2	Reactome: R-HSA-2408508;Reactome: R-HSA-389661	"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Glyoxylate metabolism and glycine degradation"
JAMg_model_3581.1	57	Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-6798695;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870	"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"UCH proteinases";"FCERI mediated NF-kB activation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"Neutrophil degranulation";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins"
JAMg_model_11982.1	2	Reactome: R-HSA-430039;Reactome: R-HSA-72163	"mRNA decay by 5' to 3' exoribonuclease";"mRNA Splicing - Major Pathway"
JAMg_model_8926.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_7216.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_9164.2	2	KEGG: 00970+6.1.1.11;MetaCyc: PWY-6281	"Aminoacyl-tRNA biosynthesis";"L-selenocysteine biosynthesis II (archaea and eukaryotes)"
JAMg_model_17299.2	11	MetaCyc: PWY-7456;MetaCyc: PWY-5659;MetaCyc: PWY-882;MetaCyc: PWY-3861;MetaCyc: PWY-6992;MetaCyc: PWY-7586;KEGG: 00051+5.3.1.8;Reactome: R-HSA-4043916;Reactome: R-HSA-446205;MetaCyc: PWY-3881;KEGG: 00520+5.3.1.8	"Beta-(1,4)-mannan degradation";"GDP-mannose biosynthesis";"L-ascorbate biosynthesis I (L-galactose pathway)";"Mannitol degradation II";"1,5-anhydrofructose degradation";"Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation";"Fructose and mannose metabolism";"Defective MPI causes MPI-CDG (CDG-1b)";"Synthesis of GDP-mannose";"Mannitol biosynthesis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_2446.4	5	Reactome: R-HSA-73762;Reactome: R-HSA-8943724;Reactome: R-HSA-3214815;Reactome: R-HSA-427389;Reactome: R-HSA-6804758	"RNA Polymerase I Transcription Initiation";"Regulation of PTEN gene transcription";"HDACs deacetylate histones";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"Regulation of TP53 Activity through Acetylation"
JAMg_model_21029.3	15	Reactome: R-HSA-4641262;Reactome: R-HSA-5467340;Reactome: R-HSA-5358747;Reactome: R-HSA-3769402;Reactome: R-HSA-196299;Reactome: R-HSA-5358751;Reactome: R-HSA-5467333;Reactome: R-HSA-5467337;Reactome: R-HSA-5689896;Reactome: R-HSA-195253;Reactome: R-HSA-5358749;Reactome: R-HSA-5467348;Reactome: R-HSA-111465;Reactome: R-HSA-5358752;Reactome: R-HSA-5339716	"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"AXIN missense mutants destabilize the destruction complex";"S33 mutants of beta-catenin aren't phosphorylated";"Deactivation of the beta-catenin transactivating complex";"Beta-catenin phosphorylation cascade";"S45 mutants of beta-catenin aren't phosphorylated";"APC truncation mutants are not K63 polyubiquitinated";"APC truncation mutants have impaired AXIN binding";"Ovarian tumor domain proteases";"Degradation of beta-catenin by the destruction complex";"S37 mutants of beta-catenin aren't phosphorylated";"Truncations of AMER1 destabilize the destruction complex";"Apoptotic cleavage of cellular proteins";"T41 mutants of beta-catenin aren't phosphorylated";"Misspliced GSK3beta mutants stabilize beta-catenin"
JAMg_model_7374.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_14652.2	13	Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_18918.2	3	KEGG: 00620+4.4.1.5;MetaCyc: PWY-5386;Reactome: R-HSA-70268	"Pyruvate metabolism";"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_11686.1	7	Reactome: R-HSA-983170;Reactome: R-HSA-3371453;Reactome: R-HSA-381183;Reactome: R-HSA-381070;Reactome: R-HSA-114608;Reactome: R-HSA-381042;Reactome: R-HSA-381033	"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Regulation of HSF1-mediated heat shock response";"ATF6 (ATF6-alpha) activates chaperone genes";"IRE1alpha activates chaperones";"Platelet degranulation";"PERK regulates gene expression";"ATF6 (ATF6-alpha) activates chaperones"
JAMg_model_1909.3	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_15574.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_9481.1	8	Reactome: R-HSA-983712;Reactome: R-HSA-182218;Reactome: R-HSA-9636467;Reactome: R-HSA-1222556;Reactome: R-HSA-167590;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-9639288	"Ion channel transport";"Nef Mediated CD8 Down-regulation";"Blockage of phagosome acidification";"ROS and RNS production in phagocytes";"Nef Mediated CD4 Down-regulation";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Amino acids regulate mTORC1"
JAMg_model_434.1	6	Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-5884;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84	"Wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis"
JAMg_model_11749.1	3	Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-6811438	"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic"
JAMg_model_1505.1	1	Reactome: R-HSA-418886	"Netrin mediated repulsion signals"
JAMg_model_17775.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_8910.6	2	Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_10547.3	6	Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220	"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins"
JAMg_model_12162.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_7918.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_11090.2	4	Reactome: R-HSA-8874211;Reactome: R-HSA-381033;Reactome: R-HSA-8963889;Reactome: R-HSA-1655829	"CREB3 factors activate genes";"ATF6 (ATF6-alpha) activates chaperones";"Assembly of active LPL and LIPC lipase complexes";"Regulation of cholesterol biosynthesis by SREBP (SREBF)"
JAMg_model_13145.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_1489.2	2	KEGG: 00230+2.7.4.8;MetaCyc: PWY-7221	"Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis"
JAMg_model_6807.5	5	KEGG: 00720+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00630+4.2.1.3;KEGG: 00020+4.2.1.3;KEGG: 00290+4.2.1.33	"Carbon fixation pathways in prokaryotes";"Iron uptake and transport";"Glyoxylate and dicarboxylate metabolism";"Citrate cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis"
JAMg_model_11399.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_3074.3	2	Reactome: R-HSA-6803205;Reactome: R-HSA-8873719	"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain";"RAB geranylgeranylation"
JAMg_model_13099.2	3	MetaCyc: PWY-7807;MetaCyc: PWY-7805;KEGG: 00190+3.6.1.1	"Glyphosate degradation III";"(aminomethyl)phosphonate degradation";"Oxidative phosphorylation"
JAMg_model_16400.3	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_1255.1	4	Reactome: R-HSA-8856828;Reactome: R-HSA-3928662;Reactome: R-HSA-2029482;Reactome: R-HSA-5663213	"Clathrin-mediated endocytosis";"EPHB-mediated forward signaling";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs"
JAMg_model_16323.1	5	Reactome: R-HSA-5689880;Reactome: R-HSA-4641257;Reactome: R-HSA-201681;MetaCyc: PWY-7511;Reactome: R-HSA-8948751	"Ub-specific processing proteases";"Degradation of AXIN";"TCF dependent signaling in response to WNT";"Protein ubiquitination";"Regulation of PTEN stability and activity"
JAMg_model_3864.2	3	MetaCyc: PWY-7159;KEGG: 00860+1.3.3.4;Reactome: R-HSA-189451	"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis"
JAMg_model_8550.7	14	MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7619;KEGG: 00062+2.3.1.199;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-5972;MetaCyc: PWY-7035;MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-5080;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7725	"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Fatty acid elongation";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis V (8-detaturase, mammals)"
JAMg_model_7014.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_17035.1	7	Reactome: R-HSA-74259;Reactome: R-HSA-194840;MetaCyc: PWY-7442;MetaCyc: PWY-5497;MetaCyc: PWY-6608;KEGG: 00230+3.5.4.3;MetaCyc: PWY-6606	"Purine catabolism";"Rho GTPase cycle";"Drosopterin and aurodrosopterin biosynthesis";"Purine nucleobases degradation II (anaerobic)";"Guanosine nucleotides degradation III";"Purine metabolism";"Guanosine nucleotides degradation II"
JAMg_model_2563.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_19317.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_9600.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6798695	"COPI-dependent Golgi-to-ER retrograde traffic";"Neutrophil degranulation"
JAMg_model_19213.4	3	Reactome: R-HSA-6798695;MetaCyc: PWY-6807;KEGG: 00511+3.2.1.51	"Neutrophil degranulation";"Xyloglucan degradation II (exoglucanase)";"Other glycan degradation"
JAMg_model_3367.1	6	Reactome: R-HSA-5632684;Reactome: R-HSA-112382;Reactome: R-HSA-75955;Reactome: R-HSA-8866654;Reactome: R-HSA-201722;Reactome: R-HSA-674695	"Hedgehog 'on' state";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Elongation";"E3 ubiquitin ligases ubiquitinate target proteins";"Formation of the beta-catenin:TCF transactivating complex";"RNA Polymerase II Pre-transcription Events"
JAMg_model_16890.1	1	Reactome: R-HSA-74217	"Purine salvage"
JAMg_model_20037.1	1	Reactome: R-HSA-3000471	"Scavenging by Class B Receptors"
JAMg_model_3663.5	5	KEGG: 00983+2.7.1.21;KEGG: 00240+2.7.1.21;MetaCyc: PWY-7199;Reactome: R-HSA-69205;Reactome: R-HSA-73614	"Drug metabolism - other enzymes";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleosides salvage";"G1/S-Specific Transcription";"Pyrimidine salvage"
JAMg_model_7864.5	3	Reactome: R-HSA-983189;Reactome: R-HSA-390471;Reactome: R-HSA-6811434	"Kinesins";"Association of TriC/CCT with target proteins during biosynthesis";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_2280.7	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_1902.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_9965.2	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_7489.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_8077.1	5	Reactome: R-HSA-912446;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693554;Reactome: R-HSA-5693568	"Meiotic recombination";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_10021.3	4	Reactome: R-HSA-1855183;MetaCyc: PWY-4841;KEGG: 00562+1.13.99.1;KEGG: 00053+1.13.99.1	"Synthesis of IP2, IP, and Ins in the cytosol";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Inositol phosphate metabolism";"Ascorbate and aldarate metabolism"
JAMg_model_5874.5	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_9311.1	2	Reactome: R-HSA-429947;Reactome: R-HSA-6804115	"Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain"
JAMg_model_18090.1	3	Reactome: R-HSA-947581;MetaCyc: PWY-6823;KEGG: 00790+4.1.99.22	"Molybdenum cofactor biosynthesis";"Molybdenum cofactor biosynthesis";"Folate biosynthesis"
JAMg_model_4502.1	16	Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5693548;Reactome: R-HSA-201722;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-9018519;Reactome: R-HSA-5693571;Reactome: R-HSA-5693568;Reactome: R-HSA-3214847;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-5693579;Reactome: R-HSA-2559586;Reactome: R-HSA-6804756;Reactome: R-HSA-5693565	"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Sensing of DNA Double Strand Breaks";"Formation of the beta-catenin:TCF transactivating complex";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Estrogen-dependent gene expression";"Nonhomologous End-Joining (NHEJ)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"HATs acetylate histones";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"Homologous DNA Pairing and Strand Exchange";"DNA Damage/Telomere Stress Induced Senescence";"Regulation of TP53 Activity through Phosphorylation";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_8783.2	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_5841.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_6618.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_7088.2	3	KEGG: 04070+2.7.4.24+2.7.4.21;Reactome: R-HSA-1855167;MetaCyc: PWY-6369	"Phosphatidylinositol signaling system";"Synthesis of pyrophosphates in the cytosol";"Inositol diphosphates biosynthesis"
JAMg_model_12965.1	4	Reactome: R-HSA-5678895;Reactome: R-HSA-5358346;Reactome: R-HSA-5362768;Reactome: R-HSA-382556	"Defective CFTR causes cystic fibrosis";"Hedgehog ligand biogenesis";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"ABC-family proteins mediated transport"
JAMg_model_1536.1	9	Reactome: R-HSA-166208;Reactome: R-HSA-6798695;Reactome: R-HSA-380972;Reactome: R-HSA-165159;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-9639288;Reactome: R-HSA-5674135;Reactome: R-HSA-5628897	"mTORC1-mediated signalling";"Neutrophil degranulation";"Energy dependent regulation of mTOR by LKB1-AMPK";"mTOR signalling";"Macroautophagy";"Regulation of PTEN gene transcription";"Amino acids regulate mTORC1";"MAP2K and MAPK activation";"TP53 Regulates Metabolic Genes"
JAMg_model_4800.2	27	Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-170822;Reactome: R-HSA-168276;Reactome: R-HSA-159236;Reactome: R-HSA-4085377;Reactome: R-HSA-4551638;Reactome: R-HSA-4570464;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-3232142;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-168333;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-1169408	"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NS1 Mediated Effects on Host Pathways";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins";"SUMOylation of RNA binding proteins";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Transcriptional regulation by small RNAs";"SUMOylation of ubiquitinylation proteins";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"ISG15 antiviral mechanism"
JAMg_model_5978.3	1	Reactome: R-HSA-8856828	"Clathrin-mediated endocytosis"
JAMg_model_5091.1	16	KEGG: 00010+4.2.1.11;MetaCyc: PWY-6142;MetaCyc: PWY-2221;MetaCyc: PWY-7124;MetaCyc: PWY-7218;MetaCyc: PWY-1042;MetaCyc: PWY-6901;KEGG: 00680+4.2.1.11;MetaCyc: PWY-7003;Reactome: R-HSA-70171;MetaCyc: PWY-5723;Reactome: R-HSA-70263;MetaCyc: PWY-6886;MetaCyc: PWY-8004;MetaCyc: PWY-1622;MetaCyc: PWY-5484	"Glycolysis / Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Ethylene biosynthesis V (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Methane metabolism";"Glycerol degradation to butanol";"Glycolysis";"Rubisco shunt";"Gluconeogenesis";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Formaldehyde assimilation I (serine pathway)";"Glycolysis II (from fructose 6-phosphate)"
JAMg_model_43.1	5	Reactome: R-HSA-389661;KEGG: 00020+1.2.4.2;KEGG: 00380+1.2.4.2;KEGG: 00310+1.2.4.2;MetaCyc: PWY-5084	"Glyoxylate metabolism and glycine degradation";"Citrate cycle (TCA cycle)";"Tryptophan metabolism";"Lysine degradation";"2-oxoglutarate decarboxylation to succinyl-CoA"
JAMg_model_19062.1	8	MetaCyc: PWY-6922;Reactome: R-HSA-70688;Reactome: R-HSA-1442490;MetaCyc: PWY-5737;Reactome: R-HSA-1650814;Reactome: R-HSA-8948216;Reactome: R-HSA-2022090;KEGG: 00330+1.5.5.2	"L-Ndelta-acetylornithine biosynthesis";"Proline catabolism";"Collagen degradation";"(5R)-carbapenem carboxylate biosynthesis";"Collagen biosynthesis and modifying enzymes";"Collagen chain trimerization";"Assembly of collagen fibrils and other multimeric structures";"Arginine and proline metabolism"
JAMg_model_3655.2	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_4828.4	3	Reactome: R-HSA-525793;Reactome: R-HSA-5663220;Reactome: R-HSA-9634638	"Myogenesis";"RHO GTPases Activate Formins";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling"
JAMg_model_11034.3	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_9141.3	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_5587.2	2	Reactome: R-HSA-445095;Reactome: R-HSA-6807878	"Interaction between L1 and Ankyrins";"COPI-mediated anterograde transport"
JAMg_model_18440.5	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_6333.5	10	MetaCyc: PWY-5839;MetaCyc: PWY-5890;MetaCyc: PWY-5849;Reactome: R-HSA-2142789;MetaCyc: PWY-5891;KEGG: 00130+2.1.1.163;MetaCyc: PWY-7996;MetaCyc: PWY-5895;MetaCyc: PWY-5844;MetaCyc: PWY-5892	"Menaquinol-7 biosynthesis";"Menaquinol-10 biosynthesis";"Menaquinol-6 biosynthesis";"Ubiquinol biosynthesis";"Menaquinol-11 biosynthesis";"Ubiquinone and other terpenoid-quinone biosynthesis";"Menaquinol-4 biosynthesis I";"Menaquinol-13 biosynthesis";"Menaquinol-9 biosynthesis";"Menaquinol-12 biosynthesis"
JAMg_model_830.1	16	Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339	"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_14313.1	1	Reactome: R-HSA-381753	"Olfactory Signaling Pathway"
JAMg_model_5470.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_7199.1	2	KEGG: 00983+3.6.1.23;KEGG: 00240+3.6.1.23	"Drug metabolism - other enzymes";"Pyrimidine metabolism"
JAMg_model_2280.4	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_19013.1	7	Reactome: R-HSA-2122948;Reactome: R-HSA-2979096;Reactome: R-HSA-9013507;Reactome: R-HSA-2894862;MetaCyc: PWY-7511;Reactome: R-HSA-2644606;Reactome: R-HSA-2691232	"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Protein ubiquitination";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD Domain Mutants"
JAMg_model_17734.1	5	Reactome: R-HSA-189451;MetaCyc: PWY-5189;Reactome: R-HSA-6798695;KEGG: 00860+4.2.1.24;MetaCyc: PWY-5188	"Heme biosynthesis";"Tetrapyrrole biosynthesis II (from glycine)";"Neutrophil degranulation";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)"
JAMg_model_15895.2	7	Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-166208;Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-165159;Reactome: R-HSA-5628897	"Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"mTORC1-mediated signalling";"Regulation of PTEN gene transcription";"Macroautophagy";"mTOR signalling";"TP53 Regulates Metabolic Genes"
JAMg_model_11737.7	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_14642.1	2	Reactome: R-HSA-525793;Reactome: R-HSA-373752	"Myogenesis";"Netrin-1 signaling"
JAMg_model_326.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_11379.2	3	Reactome: R-HSA-429947;Reactome: R-HSA-380994;Reactome: R-HSA-450604	"Deadenylation of mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"KSRP (KHSRP) binds and destabilizes mRNA"
JAMg_model_9279.2	10	Reactome: R-HSA-381042;Reactome: R-HSA-72649;Reactome: R-HSA-9648895;Reactome: R-HSA-9633012;Reactome: R-HSA-382556;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-72731;Reactome: R-HSA-156827	"PERK regulates gene expression";"Translation initiation complex formation";"Response of EIF2AK1 (HRI) to heme deficiency";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"ABC-family proteins mediated transport";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Recycling of eIF2:GDP";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_4262.1	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394	"UCH proteinases";"DNA Damage Recognition in GG-NER"
JAMg_model_20955.2	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_1643.2	1	Reactome: R-HSA-382556	"ABC-family proteins mediated transport"
JAMg_model_12909.1	6	KEGG: 00930+3.1.1.17;MetaCyc: PWY-5530;KEGG: 00053+3.1.1.17;MetaCyc: PWY-2221;MetaCyc: PWY-7165;KEGG: 00030+3.1.1.17	"Caprolactam degradation";"Sorbitol biosynthesis II";"Ascorbate and aldarate metabolism";"Entner-Doudoroff pathway III (semi-phosphorylative)";"L-ascorbate biosynthesis VI (engineered pathway)";"Pentose phosphate pathway"
JAMg_model_11652.1	6	KEGG: 00930+3.1.1.17;KEGG: 00053+3.1.1.17;MetaCyc: PWY-5530;MetaCyc: PWY-7165;KEGG: 00030+3.1.1.17;MetaCyc: PWY-2221	"Caprolactam degradation";"Ascorbate and aldarate metabolism";"Sorbitol biosynthesis II";"L-ascorbate biosynthesis VI (engineered pathway)";"Pentose phosphate pathway";"Entner-Doudoroff pathway III (semi-phosphorylative)"
JAMg_model_13366.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_2867.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_7933.1	1	Reactome: R-HSA-4085001	"Sialic acid metabolism"
JAMg_model_13193.1	3	MetaCyc: PWY-7831;Reactome: R-HSA-9033807;MetaCyc: PWY-7833	"ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide";"ABO blood group biosynthesis";"Biosynthesis of Lewis epitopes (H. pylori)"
JAMg_model_15645.1	7	Reactome: R-HSA-5083628;Reactome: R-HSA-5173105;Reactome: R-HSA-3000178;Reactome: R-HSA-5083629;Reactome: R-HSA-3000171;Reactome: R-HSA-9010553;Reactome: R-HSA-5083633	"Defective POMGNT1 causes MDDGA3, MDDGB3 and MDDGC3";"O-linked glycosylation";"ECM proteoglycans";"Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2";"Non-integrin membrane-ECM interactions";"Regulation of expression of SLITs and ROBOs";"Defective POMT1 causes MDDGA1, MDDGB1 and MDDGC1"
JAMg_model_12934.1	1	Reactome: R-HSA-111957	"Cam-PDE 1 activation"
JAMg_model_6481.2	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_20249.2	2	Reactome: R-HSA-72706;Reactome: R-HSA-72702	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition"
JAMg_model_11303.2	2	Reactome: R-HSA-4086398;Reactome: R-HSA-418457	"Ca2+ pathway";"cGMP effects"
JAMg_model_17691.1	5	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport"
JAMg_model_9126.1	1	Reactome: R-HSA-425381	"Bicarbonate transporters"
JAMg_model_13435.3	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_3037.1	5	Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556	"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes"
JAMg_model_8191.1	1	Reactome: R-HSA-446205	"Synthesis of GDP-mannose"
JAMg_model_21022.8	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706	"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_19465.2	30	Reactome: R-HSA-8939902;Reactome: R-HSA-917937;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-5610780;Reactome: R-HSA-2122947;Reactome: R-HSA-5676590;Reactome: R-HSA-8951664;Reactome: R-HSA-2871837;Reactome: R-HSA-5610783;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-1170546;Reactome: R-HSA-187577;Reactome: R-HSA-2565942;Reactome: R-HSA-195253;Reactome: R-HSA-5684264;Reactome: R-HSA-180534;Reactome: R-HSA-9604323;Reactome: R-HSA-2644607;Reactome: R-HSA-400253;Reactome: R-HSA-2894862;Reactome: R-HSA-5607764;Reactome: R-HSA-69231;Reactome: R-HSA-2644606	"Regulation of RUNX2 expression and activity";"Iron uptake and transport";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Degradation of GLI1 by the proteasome";"NOTCH1 Intracellular Domain Regulates Transcription";"NIK-->noncanonical NF-kB signaling";"Neddylation";"FCERI mediated NF-kB activation";"Degradation of GLI2 by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Prolactin receptor signaling";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of PLK1 Activity at G2/M Transition";"Degradation of beta-catenin by the destruction complex";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Vpu mediated degradation of CD4";"Negative regulation of NOTCH4 signaling";"Loss of Function of FBXW7 in Cancer and NOTCH1 Signaling";"Circadian Clock";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"CLEC7A (Dectin-1) signaling";"Cyclin D associated events in G1";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_16874.1	2	Reactome: R-HSA-373080;Reactome: R-HSA-3238698	"Class B/2 (Secretin family receptors)";"WNT ligand biogenesis and trafficking"
JAMg_model_20943.1	2	Reactome: R-HSA-156588;Reactome: R-HSA-6798163	"Glucuronidation";"Choline catabolism"
JAMg_model_8084.1	1	Reactome: R-HSA-426048	"Arachidonate production from DAG"
JAMg_model_21325.2	1	Reactome: R-HSA-2024096	"HS-GAG degradation"
JAMg_model_12919.4	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_997.6	2	Reactome: R-HSA-6782315;MetaCyc: PWY-6829	"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)"
JAMg_model_4337.1	1	Reactome: R-HSA-186797	"Signaling by PDGF"
JAMg_model_907.5	8	Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-3928665;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-196025	"Gap junction degradation";"Lysosome Vesicle Biogenesis";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"EPH-ephrin mediated repulsion of cells";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"Formation of annular gap junctions"
JAMg_model_4814.1	13	Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689	"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits"
JAMg_model_209.1	2	KEGG: 00900+2.5.1.58;Reactome: R-HSA-2514859	"Terpenoid backbone biosynthesis";"Inactivation, recovery and regulation of the phototransduction cascade"
JAMg_model_19737.1	14	MetaCyc: PWY-7783;Reactome: R-HSA-1482788;MetaCyc: PWY-8051;Reactome: R-HSA-975634;KEGG: 00592+3.1.1.4;MetaCyc: PWY-8053;KEGG: 00591+3.1.1.4;MetaCyc: PWY-6803;MetaCyc: PWY-7416;KEGG: 00590+3.1.1.4;KEGG: 00564+3.1.1.4+3.1.1.5;MetaCyc: PWY-7409;MetaCyc: PWY-7417;KEGG: 00565+3.1.1.4	"Plasmalogen degradation";"Acyl chain remodelling of PC";"Anandamide biosynthesis I";"Retinoid metabolism and transport";"alpha-Linolenic acid metabolism";"Anandamide biosynthesis II";"Linoleic acid metabolism";"Phosphatidylcholine acyl editing";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Arachidonic acid metabolism";"Glycerophospholipid metabolism";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Phospholipid remodeling (phosphatidate, yeast)";"Ether lipid metabolism"
JAMg_model_3086.1	14	Reactome: R-HSA-9017802;Reactome: R-HSA-205043;Reactome: R-HSA-1251985;Reactome: R-HSA-977225;Reactome: R-HSA-193692;Reactome: R-HSA-2979096;Reactome: R-HSA-3928665;Reactome: R-HSA-2894862;Reactome: R-HSA-9013507;Reactome: R-HSA-9013700;Reactome: R-HSA-2122948;Reactome: R-HSA-1474228;Reactome: R-HSA-6798695;Reactome: R-HSA-2644606	"Noncanonical activation of NOTCH3";"NRIF signals cell death from the nucleus";"Nuclear signaling by ERBB4";"Amyloid fiber formation";"Regulated proteolysis of p75NTR";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"EPH-ephrin mediated repulsion of cells";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"NOTCH4 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus";"Degradation of the extracellular matrix";"Neutrophil degranulation";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_6358.1	2	Reactome: R-HSA-174403;Reactome: R-HSA-5578999	"Glutathione synthesis and recycling";"Defective GCLC causes Hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency (HAGGSD)"
JAMg_model_5433.1	4	Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"ROS and RNS production in phagocytes";"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_20249.4	2	Reactome: R-HSA-72702;Reactome: R-HSA-72706	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_4381.2	5	Reactome: R-HSA-5696400;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-6782135;Reactome: R-HSA-6783310	"Dual Incision in GG-NER";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Dual incision in TC-NER";"Fanconi Anemia Pathway"
JAMg_model_5924.4	3	Reactome: R-HSA-8951664;MetaCyc: PWY-7511;Reactome: R-HSA-349425	"Neddylation";"Protein ubiquitination";"Autodegradation of the E3 ubiquitin ligase COP1"
JAMg_model_19036.1	11	Reactome: R-HSA-71403;MetaCyc: PWY-6549;MetaCyc: PWY-7254;KEGG: 00720+1.1.1.42;MetaCyc: PWY-5913;KEGG: 00020+1.1.1.42;MetaCyc: PWY-6969;MetaCyc: PWY-6728;MetaCyc: PWY-7268;MetaCyc: PWY-7124;KEGG: 00480+1.1.1.42	"Citric acid cycle (TCA cycle)";"L-glutamine biosynthesis III";"TCA cycle VII (acetate-producers)";"Carbon fixation pathways in prokaryotes";"Partial TCA cycle (obligate autotrophs)";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Methylaspartate cycle";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Ethylene biosynthesis V (engineered)";"Glutathione metabolism"
JAMg_model_8944.1	1	Reactome: R-HSA-169911	"Regulation of Apoptosis"
JAMg_model_12131.1	1	Reactome: R-HSA-6811434	"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_16392.2	6	Reactome: R-HSA-8936459;Reactome: R-HSA-5617472;Reactome: R-HSA-3214841;Reactome: R-HSA-3769402;Reactome: R-HSA-201722;Reactome: R-HSA-8951664	"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"PKMTs methylate histone lysines";"Deactivation of the beta-catenin transactivating complex";"Formation of the beta-catenin:TCF transactivating complex";"Neddylation"
JAMg_model_4893.2	12	Reactome: R-HSA-73817;MetaCyc: PWY-6613;KEGG: 00670+2.1.2.2;MetaCyc: PWY-6121;MetaCyc: PWY-6277;KEGG: 00230+2.1.2.2;Reactome: R-HSA-196780;KEGG: 00230+6.3.4.13;KEGG: 00230+6.3.3.1;MetaCyc: PWY-6122;KEGG: 00670+2.1.2.9;KEGG: 00970+2.1.2.9	"Purine ribonucleoside monophosphate biosynthesis";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"One carbon pool by folate";"5-aminoimidazole ribonucleotide biosynthesis I";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"Purine metabolism";"Biotin transport and metabolism";"Purine metabolism";"Purine metabolism";"5-aminoimidazole ribonucleotide biosynthesis II";"One carbon pool by folate";"Aminoacyl-tRNA biosynthesis"
JAMg_model_1645.1	6	KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00531+3.2.1.23	"Galactose metabolism";"Other glycan degradation";"Xyloglucan degradation II (exoglucanase)";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Glycosaminoglycan degradation"
JAMg_model_3646.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_16384.1	4	MetaCyc: PWY-7494;Reactome: R-HSA-6798163;KEGG: 00260+1.2.1.8+1.1.99.1;MetaCyc: PWY-3722	"Choline degradation IV";"Choline catabolism";"Glycine, serine and threonine metabolism";"Glycine betaine biosynthesis II (Gram-positive bacteria)"
JAMg_model_5921.4	6	Reactome: R-HSA-390450;Reactome: R-HSA-5620922;Reactome: R-HSA-389960;Reactome: R-HSA-6814122;Reactome: R-HSA-389957;Reactome: R-HSA-390471	"Folding of actin by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_15505.3	2	Reactome: R-HSA-418457;Reactome: R-HSA-4086398	"cGMP effects";"Ca2+ pathway"
JAMg_model_907.14	8	Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-5099900;Reactome: R-HSA-432720;Reactome: R-HSA-190873	"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4";"Lysosome Vesicle Biogenesis";"Gap junction degradation"
JAMg_model_21117.1	5	MetaCyc: PWY-5381;Reactome: R-HSA-196807;MetaCyc: PWY-7761;MetaCyc: PWY-5653;KEGG: 00760+2.7.7.18	"Pyridine nucleotide cycling (plants)";"Nicotinate metabolism";"NAD salvage pathway II (PNC IV cycle)";"NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde";"Nicotinate and nicotinamide metabolism"
JAMg_model_19081.2	2	KEGG: 00230+2.7.6.1;KEGG: 00030+2.7.6.1	"Purine metabolism";"Pentose phosphate pathway"
JAMg_model_17589.1	8	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04660+2.7.10.2;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"T cell receptor signaling pathway";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway"
JAMg_model_742.2	1	Reactome: R-HSA-4085001	"Sialic acid metabolism"
JAMg_model_12126.1	5	Reactome: R-HSA-2426168;Reactome: R-HSA-75105;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-9029558	"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_12579.1	2	Reactome: R-HSA-6807505;Reactome: R-HSA-72163	"RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway"
JAMg_model_1229.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_21260.5	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_3606.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_17881.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_13553.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11757.2	6	Reactome: R-HSA-8874211;Reactome: R-HSA-381033;Reactome: R-HSA-381426;Reactome: R-HSA-8963889;Reactome: R-HSA-8957275;Reactome: R-HSA-1655829	"CREB3 factors activate genes";"ATF6 (ATF6-alpha) activates chaperones";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Assembly of active LPL and LIPC lipase complexes";"Post-translational protein phosphorylation";"Regulation of cholesterol biosynthesis by SREBP (SREBF)"
JAMg_model_4200.1	1	Reactome: R-HSA-5689603	"UCH proteinases"
JAMg_model_4737.1	5	Reactome: R-HSA-5628897;Reactome: R-HSA-165181;Reactome: R-HSA-1632852;Reactome: R-HSA-8854214;Reactome: R-HSA-380972	"TP53 Regulates Metabolic Genes";"Inhibition of TSC complex formation by PKB";"Macroautophagy";"TBC/RABGAPs";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_5167.1	6	MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733	"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis"
JAMg_model_18660.1	13	Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_13397.4	7	KEGG: 00564+2.7.1.32+2.7.1.82;Reactome: R-HSA-1483213;MetaCyc: PWY-7818;MetaCyc: PWY-7886;Reactome: R-HSA-1483191;MetaCyc: PWY-7782;MetaCyc: PWY-3385	"Glycerophospholipid metabolism";"Synthesis of PE";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis";"Synthesis of PC";"Plasmalogen biosynthesis";"Choline biosynthesis I"
JAMg_model_10598.5	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5689880	"UCH proteinases";"Ub-specific processing proteases"
JAMg_model_17399.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_16884.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15399.1	6	MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656;MetaCyc: PWY-5884;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84	"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis"
JAMg_model_15020.1	2	Reactome: R-HSA-5663220;Reactome: R-HSA-376176	"RHO GTPases Activate Formins";"Signaling by ROBO receptors"
JAMg_model_17824.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_9837.2	8	KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-9633012;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1	"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Human papillomavirus infection";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Thermogenesis";"Relaxin signaling pathway";"mTOR signaling pathway";"PI3K-Akt signaling pathway"
JAMg_model_14663.3	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_4808.4	2	Reactome: R-HSA-5689880;Reactome: R-HSA-8949215	"Ub-specific processing proteases";"Mitochondrial calcium ion transport"
JAMg_model_10745.4	5	Reactome: R-HSA-159236;Reactome: R-HSA-73856;Reactome: R-HSA-72165;Reactome: R-HSA-72187;Reactome: R-HSA-72163	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination";"mRNA Splicing - Minor Pathway";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway"
JAMg_model_17703.1	6	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-6798695;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Neutrophil degranulation";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport"
JAMg_model_1040.6	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_1331.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_4541.11	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_10202.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_3090.2	3	Reactome: R-HSA-5620916;Reactome: R-HSA-1445148;Reactome: R-HSA-264876	"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing"
JAMg_model_10072.2	2	Reactome: R-HSA-5628897;Reactome: R-HSA-611105	"TP53 Regulates Metabolic Genes";"Respiratory electron transport"
JAMg_model_15423.1	1	Reactome: R-HSA-3295583	"TRP channels"
JAMg_model_17152.1	10	KEGG: 04070+2.7.1.159;MetaCyc: PWY-6362;MetaCyc: PWY-6365;Reactome: R-HSA-983231;Reactome: R-HSA-1855167;Reactome: R-HSA-1855204;MetaCyc: PWY-6366;MetaCyc: PWY-6554;KEGG: 00562+2.7.1.134+2.7.1.159;MetaCyc: PWY-4661	"Phosphatidylinositol signaling system";"1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)";"D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis";"Factors involved in megakaryocyte development and platelet production";"Synthesis of pyrophosphates in the cytosol";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis";"1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)";"Inositol phosphate metabolism";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)"
JAMg_model_1359.1	12	KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885;Reactome: R-HSA-193648;Reactome: R-HSA-416476;KEGG: 04926+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1	"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events";"Human cytomegalovirus infection";"DCC mediated attractive signaling";"NRAGE signals death through JNK";"G alpha (q) signalling events";"Relaxin signaling pathway";"Rho GTPase cycle";"Human papillomavirus infection";"Thermogenesis";"PI3K-Akt signaling pathway";"mTOR signaling pathway"
JAMg_model_17781.3	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_12508.4	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_18471.1	1	Reactome: R-HSA-2151201	"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_5232.3	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_14270.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-2151201	"PPARA activates gene expression";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_8049.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_21267.3	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_3197.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_4541.7	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380284	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome"
JAMg_model_17702.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_17079.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_18860.4	2	Reactome: R-HSA-8854214;Reactome: R-HSA-8873719	"TBC/RABGAPs";"RAB geranylgeranylation"
JAMg_model_5188.1	57	Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556	"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"FCERI mediated NF-kB activation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport"
JAMg_model_7655.2	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_16020.2	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_7092.3	5	MetaCyc: PWY-4981;MetaCyc: PWY-6344;MetaCyc: PWY-3341;KEGG: 00330+1.5.1.2;Reactome: R-HSA-8964539	"L-proline biosynthesis II (from arginine)";"L-ornithine degradation II (Stickland reaction)";"L-proline biosynthesis III (from L-ornithine)";"Arginine and proline metabolism";"Glutamate and glutamine metabolism"
JAMg_model_17214.1	16	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956	"Viral mRNA Translation";"Peptide chain elongation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_12989.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_1523.3	2	Reactome: R-HSA-1268020;Reactome: R-HSA-8949613	"Mitochondrial protein import";"Cristae formation"
JAMg_model_17734.6	5	Reactome: R-HSA-6798695;MetaCyc: PWY-5188;KEGG: 00860+4.2.1.24;Reactome: R-HSA-189451;MetaCyc: PWY-5189	"Neutrophil degranulation";"Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis";"Tetrapyrrole biosynthesis II (from glycine)"
JAMg_model_14776.4	2	Reactome: R-HSA-8983711;Reactome: R-HSA-909733	"OAS antiviral response";"Interferon alpha/beta signaling"
JAMg_model_17734.4	5	MetaCyc: PWY-5188;KEGG: 00860+4.2.1.24;Reactome: R-HSA-6798695;MetaCyc: PWY-5189;Reactome: R-HSA-189451	"Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism";"Neutrophil degranulation";"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis"
JAMg_model_19642.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_13842.1	5	KEGG: 00052+3.2.1.22;KEGG: 00561+3.2.1.22;MetaCyc: PWY-6527;KEGG: 00603+3.2.1.22;KEGG: 00600+3.2.1.22	"Galactose metabolism";"Glycerolipid metabolism";"Stachyose degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Sphingolipid metabolism"
JAMg_model_7074.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_213.1	2	Reactome: R-HSA-202433;Reactome: R-HSA-376176	"Generation of second messenger molecules";"Signaling by ROBO receptors"
JAMg_model_13712.1	2	Reactome: R-HSA-373080;Reactome: R-HSA-6811434	"Class B/2 (Secretin family receptors)";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_750.4	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_19003.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_15868.1	57	Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-532668;Reactome: R-HSA-187577;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837	"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation"
JAMg_model_3217.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4715.1	3	Reactome: R-HSA-500753;KEGG: 00240+1.3.5.2;MetaCyc: PWY-5686	"Pyrimidine biosynthesis";"Pyrimidine metabolism";"UMP biosynthesis I"
JAMg_model_10867.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_10683.2	1	Reactome: R-HSA-880009	"Interconversion of 2-oxoglutarate and 2-hydroxyglutarate"
JAMg_model_17238.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_5070.4	17	MetaCyc: PWY-6611;KEGG: 00240+2.4.2.1;MetaCyc: PWY-7179-1;MetaCyc: PWY-6627;KEGG: 00760+2.4.2.1;MetaCyc: PWY-6608;MetaCyc: PWY-5695;MetaCyc: PWY-6644;MetaCyc: PWY-7179;Reactome: R-HSA-74259;Reactome: R-HSA-74217;MetaCyc: PWY-5532;Reactome: R-HSA-6798695;KEGG: 00230+2.4.2.1;MetaCyc: PWY-6609;MetaCyc: PWY-4202;MetaCyc: PWY-6620	"Adenine and adenosine salvage V";"Pyrimidine metabolism";"Purine deoxyribonucleosides degradation II";"Salinosporamide A biosynthesis";"Nicotinate and nicotinamide metabolism";"Guanosine nucleotides degradation III";"Inosine 5'-phosphate degradation";"Fluoroacetate and fluorothreonine biosynthesis";"Purine deoxyribonucleosides degradation I";"Purine catabolism";"Purine salvage";"Nucleoside and nucleotide degradation (archaea)";"Neutrophil degranulation";"Purine metabolism";"Adenine and adenosine salvage III";"Arsenate detoxification I (mammalian)";"Guanine and guanosine salvage"
JAMg_model_20507.1	2	Reactome: R-HSA-390471;Reactome: R-HSA-1660662	"Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism"
JAMg_model_4444.1	4	Reactome: R-HSA-4641265;Reactome: R-HSA-3769402;Reactome: R-HSA-2122947;Reactome: R-HSA-201722	"Repression of WNT target genes";"Deactivation of the beta-catenin transactivating complex";"NOTCH1 Intracellular Domain Regulates Transcription";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_7185.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_9512.1	1	Reactome: R-HSA-419771	"Opsins"
JAMg_model_7791.2	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_12065.1	6	Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;MetaCyc: PWY-7817	"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_4979.1	7	Reactome: R-HSA-77348;KEGG: 00280+1.3.8.7;KEGG: 00071+1.3.8.7;Reactome: R-HSA-77288;MetaCyc: PWY-7094;Reactome: R-HSA-77346;Reactome: R-HSA-1989781	"Beta oxidation of octanoyl-CoA to hexanoyl-CoA";"Valine, leucine and isoleucine degradation";"Fatty acid degradation";"mitochondrial fatty acid beta-oxidation of unsaturated fatty acids";"Fatty acid salvage";"Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA";"PPARA activates gene expression"
JAMg_model_4356.2	3	KEGG: 00510+2.4.1.265;Reactome: R-HSA-446193;Reactome: R-HSA-4724325	"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG8 causes ALG8-CDG (CDG-1h)"
JAMg_model_16504.1	3	MetaCyc: PWY-3961;KEGG: 00770+2.7.1.33;Reactome: R-HSA-196783	"Phosphopantothenate biosynthesis II";"Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis"
JAMg_model_6807.6	5	Reactome: R-HSA-917937;KEGG: 00720+4.2.1.3;KEGG: 00630+4.2.1.3;KEGG: 00290+4.2.1.33;KEGG: 00020+4.2.1.3	"Iron uptake and transport";"Carbon fixation pathways in prokaryotes";"Glyoxylate and dicarboxylate metabolism";"Valine, leucine and isoleucine biosynthesis";"Citrate cycle (TCA cycle)"
JAMg_model_16488.2	7	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"Thermogenesis";"Human papillomavirus infection";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway"
JAMg_model_18299.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_14382.1	1	Reactome: R-HSA-2559584	"Formation of Senescence-Associated Heterochromatin Foci (SAHF)"
JAMg_model_2777.7	14	Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-426496;Reactome: R-HSA-1912408;Reactome: R-HSA-426486;Reactome: R-HSA-4086398;Reactome: R-HSA-8934593;Reactome: R-HSA-9029569;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-203927;Reactome: R-HSA-8948700;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692	"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Post-transcriptional silencing by small RNAs";"Pre-NOTCH Transcription and Translation";"Small interfering RNA (siRNA) biogenesis";"Ca2+ pathway";"Regulation of RUNX1 Expression and Activity";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"MicroRNA (miRNA) biogenesis";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity"
JAMg_model_11252.2	9	MetaCyc: PWY-6118;MetaCyc: PWY-5981;MetaCyc: PWY-7902;MetaCyc: PWY-5667;KEGG: 00564+1.1.1.8;KEGG: 00564+1.1.1.94;MetaCyc: PWY-7385;MetaCyc: PWY-7411;Reactome: R-HSA-1483166	"Glycerol-3-phosphate shuttle";"CDP-diacylglycerol biosynthesis III";"Glucosylglycerol biosynthesis";"CDP-diacylglycerol biosynthesis I";"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"1,3-propanediol biosynthesis (engineered)";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA"
JAMg_model_19648.1	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_15277.7	10	MetaCyc: PWY-5497;MetaCyc: PWY-2201;KEGG: 00720+1.5.1.5+3.5.4.9;KEGG: 00670+1.5.1.5+3.5.4.9;MetaCyc: PWY-1722;MetaCyc: PWY-5030;Reactome: R-HSA-196757;MetaCyc: PWY-3841;MetaCyc: PWY-6613;MetaCyc: PWY-7909	"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"Carbon fixation pathways in prokaryotes";"One carbon pool by folate";"Formate assimilation into 5,10-methylenetetrahydrofolate";"L-histidine degradation III";"Metabolism of folate and pterines";"Folate transformations II (plants)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Formaldehyde oxidation VII (THF pathway)"
JAMg_model_9985.1	4	Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813	"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids"
JAMg_model_5971.1	2	Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_3627.1	7	Reactome: R-HSA-4615885;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444	"SUMOylation of DNA replication proteins";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_6077.1	27	Reactome: R-HSA-4085377;Reactome: R-HSA-4551638;Reactome: R-HSA-159236;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-159230;Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-168333;Reactome: R-HSA-4615885;Reactome: R-HSA-5619107;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-3232142	"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of the SLBP Dependant Mature mRNA";"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of DNA replication proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"SUMOylation of ubiquitinylation proteins"
JAMg_model_8477.3	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_12678.1	9	Reactome: R-HSA-76042;Reactome: R-HSA-75953;Reactome: R-HSA-73779;Reactome: R-HSA-6807505;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-167172;Reactome: R-HSA-167162	"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape"
JAMg_model_10918.1	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_1488.1	10	KEGG: 00052+2.7.1.11;MetaCyc: PWY-7385;KEGG: 00010+2.7.1.11;MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00680+2.7.1.11;MetaCyc: PWY-1861;KEGG: 00030+2.7.1.11;KEGG: 00051+2.7.1.11;Reactome: R-HSA-70171	"Galactose metabolism";"1,3-propanediol biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Methane metabolism";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Pentose phosphate pathway";"Fructose and mannose metabolism";"Glycolysis"
JAMg_model_7552.2	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_3303.7	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_7160.1	2	Reactome: R-HSA-8866907;Reactome: R-HSA-8866904	"Activation of the TFAP2 (AP-2) family of transcription factors";"Negative regulation of activity of TFAP2 (AP-2) family transcription factors"
JAMg_model_8808.1	2	Reactome: R-HSA-2022854;Reactome: R-HSA-975577	"Keratan sulfate biosynthesis";"N-Glycan antennae elongation"
JAMg_model_5191.1	4	MetaCyc: PWY-7285;Reactome: R-HSA-6782315;MetaCyc: PWY-7286;MetaCyc: PWY-6829	"Methylwyosine biosynthesis";"tRNA modification in the nucleus and cytosol";"7-(3-amino-3-carboxypropyl)-wyosine biosynthesis";"Trna methylation (yeast)"
JAMg_model_12174.1	1	KEGG: 00970+6.1.1.9	"Aminoacyl-tRNA biosynthesis"
JAMg_model_9310.1	4	Reactome: R-HSA-2161541;Reactome: R-HSA-499943;MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Abacavir metabolism";"Interconversion of nucleotide di- and triphosphates";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_9454.1	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_4575.1	16	Reactome: R-HSA-416476;Reactome: R-HSA-912631;Reactome: R-HSA-912526;Reactome: R-HSA-1433557;Reactome: R-HSA-1266695;Reactome: R-HSA-512988;Reactome: R-HSA-389357;Reactome: R-HSA-2219530;Reactome: R-HSA-194840;Reactome: R-HSA-388841;Reactome: R-HSA-114604;Reactome: R-HSA-1660499;Reactome: R-HSA-1257604;Reactome: R-HSA-8853659;Reactome: R-HSA-9009391;Reactome: R-HSA-6811558	"G alpha (q) signalling events";"Regulation of signaling by CBL";"Interleukin receptor SHC signaling";"Signaling by SCF-KIT";"Interleukin-7 signaling";"Interleukin-3, Interleukin-5 and GM-CSF signaling";"CD28 dependent PI3K/Akt signaling";"Constitutive Signaling by Aberrant PI3K in Cancer";"Rho GTPase cycle";"Costimulation by the CD28 family";"GPVI-mediated activation cascade";"Synthesis of PIPs at the plasma membrane";"PIP3 activates AKT signaling";"RET signaling";"Extra-nuclear estrogen signaling";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling"
JAMg_model_791.1	2	KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981	"Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis"
JAMg_model_11882.3	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_11556.4	15	Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-2559580;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8853884;Reactome: R-HSA-2559585;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723	"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Oxidative Stress Induced Senescence";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation"
JAMg_model_650.4	4	Reactome: R-HSA-351202;KEGG: 00480+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00270+2.5.1.16	"Metabolism of polyamines";"Glutathione metabolism";"Arginine and proline metabolism";"Cysteine and methionine metabolism"
JAMg_model_15097.1	8	Reactome: R-HSA-182218;Reactome: R-HSA-983712;Reactome: R-HSA-167590;Reactome: R-HSA-1222556;Reactome: R-HSA-9636467;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-9639288	"Nef Mediated CD8 Down-regulation";"Ion channel transport";"Nef Mediated CD4 Down-regulation";"ROS and RNS production in phagocytes";"Blockage of phagosome acidification";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Amino acids regulate mTORC1"
JAMg_model_3434.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_16603.1	1	Reactome: R-HSA-5689880	"Ub-specific processing proteases"
JAMg_model_6228.2	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_6881.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_11988.3	2	Reactome: R-HSA-6790901;Reactome: R-HSA-171319	"rRNA modification in the nucleus and cytosol";"Telomere Extension By Telomerase"
JAMg_model_363.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_16558.1	15	MetaCyc: PWY-7003;Reactome: R-HSA-70171;MetaCyc: PWY-6142;KEGG: 00620+2.7.1.40;MetaCyc: PWY-7218;KEGG: 00230+2.7.1.40;MetaCyc: PWY-7383;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00010+2.7.1.40;MetaCyc: PWY-5723;MetaCyc: PWY-6886;MetaCyc: PWY-8004;MetaCyc: PWY-2221	"Glycerol degradation to butanol";"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Pyruvate metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Purine metabolism";"Anaerobic energy metabolism (invertebrates, cytosol)";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis / Gluconeogenesis";"Rubisco shunt";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Entner-Doudoroff pathway III (semi-phosphorylative)"
JAMg_model_10854.4	6	Reactome: R-HSA-5685938;Reactome: R-HSA-176187;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-6804756;Reactome: R-HSA-5693607	"HDR through Single Strand Annealing (SSA)";"Activation of ATR in response to replication stress";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends"
JAMg_model_18868.1	4	Reactome: R-HSA-72731;MetaCyc: PWY-7174;MetaCyc: PWY-4361;KEGG: 00270+5.3.1.23	"Recycling of eIF2:GDP";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism"
JAMg_model_8808.3	2	Reactome: R-HSA-975577;Reactome: R-HSA-2022854	"N-Glycan antennae elongation";"Keratan sulfate biosynthesis"
JAMg_model_6330.1	5	Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-72165;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"mRNA Splicing - Minor Pathway";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_12573.2	18	KEGG: 00630+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-5392;MetaCyc: PWY-7115;KEGG: 00680+1.1.1.37;KEGG: 00620+1.1.1.37;MetaCyc: PWY-6728;KEGG: 00270+1.1.1.37;KEGG: 00720+1.1.1.37;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-5690;MetaCyc: PWY-1622;KEGG: 00710+1.1.1.37;Reactome: R-HSA-70263;MetaCyc: PWY-7383;KEGG: 00020+1.1.1.37;MetaCyc: PWY-561	"Glyoxylate and dicarboxylate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Reductive TCA cycle II";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Methane metabolism";"Pyruvate metabolism";"Methylaspartate cycle";"Cysteine and methionine metabolism";"Carbon fixation pathways in prokaryotes";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"TCA cycle II (plants and fungi)";"Formaldehyde assimilation I (serine pathway)";"Carbon fixation in photosynthetic organisms";"Gluconeogenesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"Citrate cycle (TCA cycle)";"Superpathway of glyoxylate cycle and fatty acid degradation"
JAMg_model_21022.9	13	Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339	"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_20925.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_2017.1	5	Reactome: R-HSA-6798695;KEGG: 00760+6.3.4.21;MetaCyc: PWY-5381;Reactome: R-HSA-1368108;Reactome: R-HSA-197264	"Neutrophil degranulation";"Nicotinate and nicotinamide metabolism";"Pyridine nucleotide cycling (plants)";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Nicotinamide salvaging"
JAMg_model_15527.1	6	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16;Reactome: R-HSA-8939211;Reactome: R-HSA-5675221;Reactome: R-HSA-5693565	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation";"ESR-mediated signaling";"Negative regulation of MAPK pathway";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_3430.2	1	Reactome: R-HSA-381038	"XBP1(S) activates chaperone genes"
JAMg_model_19704.3	2	Reactome: R-HSA-2022928;MetaCyc: PWY-6558	"HS-GAG biosynthesis";"Heparan sulfate biosynthesis (late stages)"
JAMg_model_20392.2	4	Reactome: R-HSA-5656121;Reactome: R-HSA-5656169;Reactome: R-HSA-5655862;Reactome: R-HSA-110312	"Translesion synthesis by POLI";"Termination of translesion DNA synthesis";"Translesion synthesis by POLK";"Translesion synthesis by REV1"
JAMg_model_7014.3	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_19917.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_15154.6	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_14414.3	3	Reactome: R-HSA-1660662;Reactome: R-HSA-5626978;Reactome: R-HSA-193681	"Glycosphingolipid metabolism";"TNFR1-mediated ceramide production";"Ceramide signalling"
JAMg_model_8803.2	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_9054.6	3	MetaCyc: PWY-6117;KEGG: 00330+2.3.1.57;MetaCyc: PWY-0	"Spermine and spermidine degradation I";"Arginine and proline metabolism";"Putrescine degradation III"
JAMg_model_19824.1	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_11774.2	2	Reactome: R-HSA-416476;Reactome: R-HSA-380095	"G alpha (q) signalling events";"Tachykinin receptors bind tachykinins"
JAMg_model_15906.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_17785.2	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_10767.1	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706	"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_16763.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_20651.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_6816.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_20404.4	10	KEGG: 00562+5.3.1.1;KEGG: 00710+5.3.1.1;MetaCyc: PWY-1042;MetaCyc: PWY-5484;Reactome: R-HSA-70263;KEGG: 00010+5.3.1.1;Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00051+5.3.1.1;MetaCyc: PWY-6142	"Inositol phosphate metabolism";"Carbon fixation in photosynthetic organisms";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Glycolysis";"Glycerol degradation to butanol";"Fructose and mannose metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)"
JAMg_model_13381.2	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_14287.1	11	Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-174437;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554;Reactome: R-HSA-5693607;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-6804756;Reactome: R-HSA-69166;Reactome: R-HSA-5693568	"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Removal of the Flap Intermediate from the C-strand";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Processing of DNA double-strand break ends";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Regulation of TP53 Activity through Phosphorylation";"Removal of the Flap Intermediate";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_9072.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_1093.2	24	Reactome: R-HSA-9009391;Reactome: R-HSA-392851;Reactome: R-HSA-392170;Reactome: R-HSA-4086398;Reactome: R-HSA-456926;Reactome: R-HSA-418592;Reactome: R-HSA-418217;Reactome: R-HSA-381676;Reactome: R-HSA-432040;Reactome: R-HSA-428930;Reactome: R-HSA-163359;Reactome: R-HSA-418594;Reactome: R-HSA-400042;Reactome: R-HSA-416482;Reactome: R-HSA-418555;Reactome: R-HSA-500657;Reactome: R-HSA-202040;Reactome: R-HSA-6814122;Reactome: R-HSA-392451;Reactome: R-HSA-8964315;Reactome: R-HSA-416476;Reactome: R-HSA-418597;Reactome: R-HSA-420092;Reactome: R-HSA-8964616	"Extra-nuclear estrogen signaling";"Prostacyclin signalling through prostacyclin receptor";"ADP signalling through P2Y purinoceptor 12";"Ca2+ pathway";"Thrombin signalling through proteinase activated receptors (PARs)";"ADP signalling through P2Y purinoceptor 1";"G beta:gamma signalling through PLC beta";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Vasopressin regulates renal water homeostasis via Aquaporins";"Thromboxane signalling through TP receptor";"Glucagon signaling in metabolic regulation";"G alpha (i) signalling events";"Adrenaline,noradrenaline inhibits insulin secretion";"G alpha (12/13) signalling events";"G alpha (s) signalling events";"Presynaptic function of Kainate receptors";"G-protein activation";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"G beta:gamma signalling through PI3Kgamma";"G beta:gamma signalling through BTK";"G alpha (q) signalling events";"G alpha (z) signalling events";"Glucagon-type ligand receptors";"G beta:gamma signalling through CDC42"
JAMg_model_14813.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_9279.3	10	Reactome: R-HSA-72731;Reactome: R-HSA-156827;Reactome: R-HSA-9648895;Reactome: R-HSA-381042;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-382556;Reactome: R-HSA-72702	"Recycling of eIF2:GDP";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK1 (HRI) to heme deficiency";"PERK regulates gene expression";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"ABC-family proteins mediated transport";"Ribosomal scanning and start codon recognition"
JAMg_model_6601.2	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_8578.1	7	KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1	"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection"
JAMg_model_15443.1	3	Reactome: R-HSA-373080;Reactome: R-HSA-4608870;Reactome: R-HSA-4086400	"Class B/2 (Secretin family receptors)";"Asymmetric localization of PCP proteins";"PCP/CE pathway"
JAMg_model_8834.3	10	Reactome: R-HSA-75953;Reactome: R-HSA-73779;MetaCyc: PWY-7511;Reactome: R-HSA-76042;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161	"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Protein ubiquitination";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation"
JAMg_model_17419.7	12	Reactome: R-HSA-8854518;Reactome: R-HSA-6807878;Reactome: R-HSA-5620912;Reactome: R-HSA-6811436;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-2132295;Reactome: R-HSA-2565942;Reactome: R-HSA-3371497;Reactome: R-HSA-380284;Reactome: R-HSA-381038;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"COPI-mediated anterograde transport";"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"MHC class II antigen presentation";"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Loss of proteins required for interphase microtubule organization from the centrosome";"XBP1(S) activates chaperone genes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_6327.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_21252.4	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_19670.3	5	Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-69205;Reactome: R-HSA-68867;Reactome: R-HSA-68827	"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"G1/S-Specific Transcription";"Assembly of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex"
JAMg_model_17458.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_13521.1	8	Reactome: R-HSA-442720;Reactome: R-HSA-164378;Reactome: R-HSA-983231;Reactome: R-HSA-381676;Reactome: R-HSA-432040;Reactome: R-HSA-163615;Reactome: R-HSA-5610787;Reactome: R-HSA-180024	"CREB1 phosphorylation through the activation of Adenylate Cyclase";"PKA activation in glucagon signalling";"Factors involved in megakaryocyte development and platelet production";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Vasopressin regulates renal water homeostasis via Aquaporins";"PKA activation";"Hedgehog 'off' state";"DARPP-32 events"
JAMg_model_19569.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_18534.3	5	Reactome: R-HSA-1266695;Reactome: R-HSA-3214858;Reactome: R-HSA-201722;Reactome: R-HSA-3247509;Reactome: R-HSA-8939243	"Interleukin-7 signaling";"RMTs methylate histone arginines";"Formation of the beta-catenin:TCF transactivating complex";"Chromatin modifying enzymes";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_5287.1	1	Reactome: R-HSA-212436	"Generic Transcription Pathway"
JAMg_model_20252.1	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_21155.1	6	MetaCyc: PWY-7900;KEGG: 00500+2.4.1.18;KEGG: 00500+3.2.1.1;Reactome: R-HSA-189085;MetaCyc: PWY-5067;MetaCyc: PWY-622	"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)";"Starch and sucrose metabolism";"Starch and sucrose metabolism";"Digestion of dietary carbohydrate";"Glycogen biosynthesis II (from UDP-D-Glucose)";"Starch biosynthesis"
JAMg_model_7416.3	1	Reactome: R-HSA-2468052	"Establishment of Sister Chromatid Cohesion"
JAMg_model_10124.4	6	KEGG: 00290+4.2.1.33;Reactome: R-HSA-71403;KEGG: 00020+4.2.1.3;KEGG: 00630+4.2.1.3;Reactome: R-HSA-1268020;KEGG: 00720+4.2.1.3	"Valine, leucine and isoleucine biosynthesis";"Citric acid cycle (TCA cycle)";"Citrate cycle (TCA cycle)";"Glyoxylate and dicarboxylate metabolism";"Mitochondrial protein import";"Carbon fixation pathways in prokaryotes"
JAMg_model_7638.4	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_20117.3	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_3318.1	3	Reactome: R-HSA-416482;Reactome: R-HSA-194840;Reactome: R-HSA-193648	"G alpha (12/13) signalling events";"Rho GTPase cycle";"NRAGE signals death through JNK"
JAMg_model_4282.2	4	Reactome: R-HSA-1614558;KEGG: 00270+1.13.11.20;MetaCyc: PWY-5331;KEGG: 00430+1.13.11.20	"Degradation of cysteine and homocysteine";"Cysteine and methionine metabolism";"Taurine biosynthesis I";"Taurine and hypotaurine metabolism"
JAMg_model_9837.4	8	KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-9633012;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1	"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection"
JAMg_model_13314.1	5	MetaCyc: PWY-7921;MetaCyc: PWY-7979;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7922;KEGG: 00514+2.4.1.109	"Protein O-mannosylation I (yeast)";"Protein O-mannosylation III (mammals, core M3)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation II (mammals, core M1 and core M2)";"Other types of O-glycan biosynthesis"
JAMg_model_9364.1	2	Reactome: R-HSA-8866652;Reactome: R-HSA-5357905	"Synthesis of active ubiquitin: roles of E1 and E2 enzymes";"Regulation of TNFR1 signaling"
JAMg_model_3715.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_15299.1	4	Reactome: R-HSA-3000157;Reactome: R-HSA-3000178;Reactome: R-HSA-3000171;Reactome: R-HSA-8874081	"Laminin interactions";"ECM proteoglycans";"Non-integrin membrane-ECM interactions";"MET activates PTK2 signaling"
JAMg_model_6538.1	12	MetaCyc: PWY-5870;MetaCyc: PWY-5857;MetaCyc: PWY-5856;KEGG: 00130+2.5.1.39;MetaCyc: PWY-5855;MetaCyc: PWY-5873;MetaCyc: PWY-6708;MetaCyc: PWY-5871;Reactome: R-HSA-1268020;MetaCyc: PWY-6978;MetaCyc: PWY-5872;Reactome: R-HSA-2142789	"Ubiquinol-8 biosynthesis (eukaryotic)";"Ubiquinol-10 biosynthesis (prokaryotic)";"Ubiquinol-9 biosynthesis (prokaryotic)";"Ubiquinone and other terpenoid-quinone biosynthesis";"Ubiquinol-7 biosynthesis (prokaryotic)";"Ubiquinol-7 biosynthesis (eukaryotic)";"Ubiquinol-8 biosynthesis (prokaryotic)";"Ubiquinol-9 biosynthesis (eukaryotic)";"Mitochondrial protein import";"Plastoquinol-9 biosynthesis II";"Ubiquinol-10 biosynthesis (eukaryotic)";"Ubiquinol biosynthesis"
JAMg_model_8169.1	1	KEGG: 00970+6.1.1.21	"Aminoacyl-tRNA biosynthesis"
JAMg_model_20230.1	1	KEGG: 00480+3.4.11.1	"Glutathione metabolism"
JAMg_model_13891.1	2	KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788	"Starch and sucrose metabolism";"Cellulose degradation II (fungi)"
JAMg_model_15492.2	2	Reactome: R-HSA-5625740;KEGG: 04070+2.7.11.13	"RHO GTPases activate PKNs";"Phosphatidylinositol signaling system"
JAMg_model_11562.4	2	Reactome: R-HSA-203927;Reactome: R-HSA-426486	"MicroRNA (miRNA) biogenesis";"Small interfering RNA (siRNA) biogenesis"
JAMg_model_6678.3	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_8762.3	7	Reactome: R-HSA-201688;Reactome: R-HSA-4086400;Reactome: R-HSA-4641258;Reactome: R-HSA-5368598;Reactome: R-HSA-201681;Reactome: R-HSA-5663220;Reactome: R-HSA-4641262	"WNT mediated activation of DVL";"PCP/CE pathway";"Degradation of DVL";"Negative regulation of TCF-dependent signaling by DVL-interacting proteins";"TCF dependent signaling in response to WNT";"RHO GTPases Activate Formins";"Disassembly of the destruction complex and recruitment of AXIN to the membrane"
JAMg_model_17281.6	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_2037.1	2	MetaCyc: PWY-6749;KEGG: 00520+5.4.2.10	"CMP-legionaminate biosynthesis I";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_5193.1	4	Reactome: R-HSA-6784531;Reactome: R-HSA-6791226;MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"tRNA processing in the nucleus";"Major pathway of rRNA processing in the nucleolus and cytosol";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_15154.8	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_2693.1	6	KEGG: 00670+2.1.2.5;Reactome: R-HSA-70921;KEGG: 00340+2.1.2.5;MetaCyc: PWY-5030;MetaCyc: PWY-5497;KEGG: 00670+4.3.1.4+2.1.2.5	"One carbon pool by folate";"Histidine catabolism";"Histidine metabolism";"L-histidine degradation III";"Purine nucleobases degradation II (anaerobic)";"One carbon pool by folate"
JAMg_model_6425.1	1	Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_6779.1	8	Reactome: R-HSA-8854518;Reactome: R-HSA-5620912;Reactome: R-HSA-6804115;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"Anchoring of the basal body to the plasma membrane";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_20862.2	2	Reactome: R-HSA-204005;Reactome: R-HSA-8876198	"COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_15277.1	10	MetaCyc: PWY-1722;KEGG: 00670+1.5.1.5+3.5.4.9;KEGG: 00720+1.5.1.5+3.5.4.9;MetaCyc: PWY-2201;MetaCyc: PWY-5497;MetaCyc: PWY-6613;MetaCyc: PWY-7909;MetaCyc: PWY-3841;Reactome: R-HSA-196757;MetaCyc: PWY-5030	"Formate assimilation into 5,10-methylenetetrahydrofolate";"One carbon pool by folate";"Carbon fixation pathways in prokaryotes";"Folate transformations I";"Purine nucleobases degradation II (anaerobic)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Formaldehyde oxidation VII (THF pathway)";"Folate transformations II (plants)";"Metabolism of folate and pterines";"L-histidine degradation III"
JAMg_model_2071.1	56	Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5610785;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978	"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"GLI3 is processed to GLI3R by the proteasome";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)"
JAMg_model_7648.2	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_3605.1	12	Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-141444;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-2132295;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878	"Mitotic Prometaphase";"HCMV Early Events";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"MHC class II antigen presentation";"Separation of Sister Chromatids";"COPI-mediated anterograde transport"
JAMg_model_9243.1	1	Reactome: R-HSA-6785631	"ERBB2 Regulates Cell Motility"
JAMg_model_6215.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-2151201	"PPARA activates gene expression";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_17560.1	4	Reactome: R-HSA-5696395;Reactome: R-HSA-6781823;Reactome: R-HSA-5696400;Reactome: R-HSA-6782135	"Formation of Incision Complex in GG-NER";"Formation of TC-NER Pre-Incision Complex";"Dual Incision in GG-NER";"Dual incision in TC-NER"
JAMg_model_15816.1	5	Reactome: R-HSA-4641257;Reactome: R-HSA-5689880;Reactome: R-HSA-5545619;Reactome: R-HSA-201681;Reactome: R-HSA-8948751	"Degradation of AXIN";"Ub-specific processing proteases";"XAV939 inhibits tankyrase, stabilizing AXIN";"TCF dependent signaling in response to WNT";"Regulation of PTEN stability and activity"
JAMg_model_11543.1	6	Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68949;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68867	"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Orc1 removal from chromatin";"Unwinding of DNA";"Activation of the pre-replicative complex";"Assembly of the pre-replicative complex"
JAMg_model_2414.1	4	Reactome: R-HSA-2467813;Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Resolution of Sister Chromatid Cohesion"
JAMg_model_4468.1	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_18187.1	5	Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693616;Reactome: R-HSA-5693554;Reactome: R-HSA-5693568	"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Presynaptic phase of homologous DNA pairing and strand exchange";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_8553.3	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_13801.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_20913.1	1	Reactome: R-HSA-163125	"Post-translational modification: synthesis of GPI-anchored proteins"
JAMg_model_17287.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_10754.4	3	Reactome: R-HSA-4420097;Reactome: R-HSA-391160;KEGG: 04660+2.7.10.2	"VEGFA-VEGFR2 Pathway";"Signal regulatory protein family interactions";"T cell receptor signaling pathway"
JAMg_model_7691.3	2	MetaCyc: PWY-7511;Reactome: R-HSA-6783310	"Protein ubiquitination";"Fanconi Anemia Pathway"
JAMg_model_11121.2	8	Reactome: R-HSA-68827;Reactome: R-HSA-68616;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68689;Reactome: R-HSA-176187;Reactome: R-HSA-68867;Reactome: R-HSA-113507	"CDT1 association with the CDC6:ORC:origin complex";"Assembly of the ORC complex at the origin of replication";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"CDC6 association with the ORC:origin complex";"Activation of ATR in response to replication stress";"Assembly of the pre-replicative complex";"E2F-enabled inhibition of pre-replication complex formation"
JAMg_model_12693.3	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_10263.2	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_18582.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_18595.1	5	Reactome: R-HSA-2426168;Reactome: R-HSA-75105;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-9029558	"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_9241.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_16125.3	3	Reactome: R-HSA-6785470;Reactome: R-HSA-8868766;Reactome: R-HSA-6784531	"tRNA processing in the mitochondrion";"rRNA processing in the mitochondrion";"tRNA processing in the nucleus"
JAMg_model_4738.2	1	Reactome: R-HSA-1221632	"Meiotic synapsis"
JAMg_model_21260.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_4541.8	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380284	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome"
JAMg_model_580.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_11868.1	5	Reactome: R-HSA-5693565;Reactome: R-HSA-5693571;Reactome: R-HSA-69473;Reactome: R-HSA-3232118;Reactome: R-HSA-5693607	"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Nonhomologous End-Joining (NHEJ)";"G2/M DNA damage checkpoint";"SUMOylation of transcription factors";"Processing of DNA double-strand break ends"
JAMg_model_642.2	6	MetaCyc: PWY-5884;MetaCyc: PWY-6733;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7656;Reactome: R-HSA-9640463;MetaCyc: PWY-7782	"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Cutin, suberine and wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis"
JAMg_model_15364.2	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_587.1	1	Reactome: R-HSA-5666185	"RHO GTPases Activate Rhotekin and Rhophilins"
JAMg_model_13339.6	1	Reactome: R-HSA-388844	"Receptor-type tyrosine-protein phosphatases"
JAMg_model_19272.2	2	KEGG: 00340+2.1.1.22;Reactome: R-HSA-70921	"Histidine metabolism";"Histidine catabolism"
JAMg_model_12573.3	18	MetaCyc: PWY-6728;KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-7115;MetaCyc: PWY-5392;MetaCyc: PWY-8086;KEGG: 00630+1.1.1.37;MetaCyc: PWY-561;KEGG: 00020+1.1.1.37;MetaCyc: PWY-7383;Reactome: R-HSA-70263;KEGG: 00710+1.1.1.37;MetaCyc: PWY-1622;MetaCyc: PWY-5690;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37	"Methylaspartate cycle";"Pyruvate metabolism";"Methane metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Reductive TCA cycle II";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Glyoxylate and dicarboxylate metabolism";"Superpathway of glyoxylate cycle and fatty acid degradation";"Citrate cycle (TCA cycle)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation I (serine pathway)";"TCA cycle II (plants and fungi)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism"
JAMg_model_16456.4	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_12221.2	1	Reactome: R-HSA-5610787	"Hedgehog 'off' state"
JAMg_model_20172.1	9	MetaCyc: PWY-7039;KEGG: 00562+3.1.4.11;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;Reactome: R-HSA-112043;KEGG: 04070+3.1.4.11;Reactome: R-HSA-416476;MetaCyc: PWY-6351;MetaCyc: PWY-8052	"Phosphatidate metabolism, as a signaling molecule";"Inositol phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"PLC beta mediated events";"Phosphatidylinositol signaling system";"G alpha (q) signalling events";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis"
JAMg_model_19742.3	3	Reactome: R-HSA-1660661;Reactome: R-HSA-6798695;Reactome: R-HSA-9609523	"Sphingolipid de novo biosynthesis";"Neutrophil degranulation";"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_8700.2	8	Reactome: R-HSA-6798695;Reactome: R-HSA-380972;Reactome: R-HSA-166208;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-165159;Reactome: R-HSA-9639288;Reactome: R-HSA-5628897	"Neutrophil degranulation";"Energy dependent regulation of mTOR by LKB1-AMPK";"mTORC1-mediated signalling";"Macroautophagy";"Regulation of PTEN gene transcription";"mTOR signalling";"Amino acids regulate mTORC1";"TP53 Regulates Metabolic Genes"
JAMg_model_11403.2	6	Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68867;Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-176974	"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Assembly of the pre-replicative complex";"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Unwinding of DNA"
JAMg_model_6042.4	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_13392.1	13	Reactome: R-HSA-139853;Reactome: R-HSA-983695;Reactome: R-HSA-114508;Reactome: R-HSA-112043;Reactome: R-HSA-4086398;Reactome: R-HSA-5607763;Reactome: R-HSA-2871809;Reactome: R-HSA-5578775;Reactome: R-HSA-2029485;Reactome: R-HSA-422356;Reactome: R-HSA-381676;Reactome: R-HSA-5218921;Reactome: R-HSA-1489509	"Elevation of cytosolic Ca2+ levels";"Antigen activates B Cell Receptor (BCR) leading to generation of second messengers";"Effects of PIP2 hydrolysis";"PLC beta mediated events";"Ca2+ pathway";"CLEC7A (Dectin-1) induces NFAT activation";"FCERI mediated Ca+2 mobilization";"Ion homeostasis";"Role of phospholipids in phagocytosis";"Regulation of insulin secretion";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"VEGFR2 mediated cell proliferation";"DAG and IP3 signaling"
JAMg_model_17671.2	3	Reactome: R-HSA-193648;Reactome: R-HSA-416482;Reactome: R-HSA-194840	"NRAGE signals death through JNK";"G alpha (12/13) signalling events";"Rho GTPase cycle"
JAMg_model_3092.1	6	Reactome: R-HSA-69052;Reactome: R-HSA-176187;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68867	"Switching of origins to a post-replicative state";"Activation of ATR in response to replication stress";"Unwinding of DNA";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Assembly of the pre-replicative complex"
JAMg_model_2466.1	1	Reactome: R-HSA-427975	"Proton/oligopeptide cotransporters"
JAMg_model_12329.1	14	MetaCyc: PWY-7254;KEGG: 00650+1.3.5.1;MetaCyc: PWY-6969;Reactome: R-HSA-611105;Reactome: R-HSA-71403;KEGG: 00190+1.3.5.1;MetaCyc: PWY-7279;MetaCyc: PWY-4302;MetaCyc: PWY-5690;MetaCyc: PWY-3781;KEGG: 00020+1.3.5.1;KEGG: 00720+1.3.5.1;MetaCyc: PWY-6728;MetaCyc: PWY-561	"TCA cycle VII (acetate-producers)";"Butanoate metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Respiratory electron transport";"Citric acid cycle (TCA cycle)";"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"Aerobic respiration III (alternative oxidase pathway)";"TCA cycle II (plants and fungi)";"Aerobic respiration I (cytochrome c)";"Citrate cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Superpathway of glyoxylate cycle and fatty acid degradation"
JAMg_model_10093.3	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_907.8	8	Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-5099900;Reactome: R-HSA-8856825;Reactome: R-HSA-196025;Reactome: R-HSA-8856828	"Gap junction degradation";"Lysosome Vesicle Biogenesis";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4";"Cargo recognition for clathrin-mediated endocytosis";"Formation of annular gap junctions";"Clathrin-mediated endocytosis"
JAMg_model_5766.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_9881.5	5	KEGG: 00860+2.3.1.37;KEGG: 00260+2.3.1.37;MetaCyc: PWY-7536;Reactome: R-HSA-189451;MetaCyc: PWY-5189	"Porphyrin and chlorophyll metabolism";"Glycine, serine and threonine metabolism";"2-amino-3-hydroxycyclopent-2-enone biosynthesis";"Heme biosynthesis";"Tetrapyrrole biosynthesis II (from glycine)"
JAMg_model_8627.1	2	KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788	"Starch and sucrose metabolism";"Cellulose degradation II (fungi)"
JAMg_model_9619.1	12	Reactome: R-HSA-193692;Reactome: R-HSA-205043;Reactome: R-HSA-1251985;Reactome: R-HSA-977225;Reactome: R-HSA-9017802;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-3928665;Reactome: R-HSA-2979096;Reactome: R-HSA-9013507;Reactome: R-HSA-2122948;Reactome: R-HSA-9013700	"Regulated proteolysis of p75NTR";"NRIF signals cell death from the nucleus";"Nuclear signaling by ERBB4";"Amyloid fiber formation";"Noncanonical activation of NOTCH3";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"EPH-ephrin mediated repulsion of cells";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH4 Activation and Transmission of Signal to the Nucleus"
JAMg_model_5017.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_9139.1	2	Reactome: R-HSA-5628897;Reactome: R-HSA-611105	"TP53 Regulates Metabolic Genes";"Respiratory electron transport"
JAMg_model_5924.3	3	MetaCyc: PWY-7511;Reactome: R-HSA-349425;Reactome: R-HSA-8951664	"Protein ubiquitination";"Autodegradation of the E3 ubiquitin ligase COP1";"Neddylation"
JAMg_model_14694.1	5	Reactome: R-HSA-5334118;KEGG: 00270+2.1.1.37;Reactome: R-HSA-212300;Reactome: R-HSA-4655427;Reactome: R-HSA-427413	"DNA methylation";"Cysteine and methionine metabolism";"PRC2 methylates histones and DNA";"SUMOylation of DNA methylation proteins";"NoRC negatively regulates rRNA expression"
JAMg_model_15126.1	13	Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_20773.2	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_10357.2	5	Reactome: R-HSA-8856825;Reactome: R-HSA-432722;Reactome: R-HSA-6798695;Reactome: R-HSA-8856828;Reactome: R-HSA-6811440	"Cargo recognition for clathrin-mediated endocytosis";"Golgi Associated Vesicle Biogenesis";"Neutrophil degranulation";"Clathrin-mediated endocytosis";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_6476.3	4	Reactome: R-HSA-2408522;Reactome: R-HSA-379726;Reactome: R-HSA-379716;KEGG: 00970+6.1.1.18	"Selenoamino acid metabolism";"Mitochondrial tRNA aminoacylation";"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_15875.5	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_3078.1	1	Reactome: R-HSA-1655829	"Regulation of cholesterol biosynthesis by SREBP (SREBF)"
JAMg_model_1639.2	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_3540.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_7547.1	1	Reactome: R-HSA-373080	"Class B/2 (Secretin family receptors)"
JAMg_model_9965.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_17283.4	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_13532.1	2	Reactome: R-HSA-2672351;Reactome: R-HSA-5578775	"Stimuli-sensing channels";"Ion homeostasis"
JAMg_model_1507.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_11556.1	15	Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884	"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX"
JAMg_model_4930.1	6	Reactome: R-HSA-1268020;KEGG: 00190+7.1.2.2;Reactome: R-HSA-163210;KEGG: 00195+7.1.2.2;Reactome: R-HSA-8949613;MetaCyc: PWY-7980	"Mitochondrial protein import";"Oxidative phosphorylation";"Formation of ATP by chemiosmotic coupling";"Photosynthesis";"Cristae formation";"ATP biosynthesis"
JAMg_model_3670.4	1	Reactome: R-HSA-5368286	"Mitochondrial translation initiation"
JAMg_model_10992.2	2	MetaCyc: PWY-6854;Reactome: R-HSA-3299685	"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species"
JAMg_model_10854.2	6	Reactome: R-HSA-176187;Reactome: R-HSA-5685938;Reactome: R-HSA-5693607;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-6804756	"Activation of ATR in response to replication stress";"HDR through Single Strand Annealing (SSA)";"Processing of DNA double-strand break ends";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_18133.4	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4926.1	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_2312.3	1	Reactome: R-HSA-111465	"Apoptotic cleavage of cellular proteins"
JAMg_model_4378.1	1	Reactome: R-HSA-3000471	"Scavenging by Class B Receptors"
JAMg_model_13305.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_2106.1	1	Reactome: R-HSA-77289	"Mitochondrial Fatty Acid Beta-Oxidation"
JAMg_model_21349.1	1	Reactome: R-HSA-376172	"DSCAM interactions"
JAMg_model_766.1	11	Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693607;Reactome: R-HSA-6804756;Reactome: R-HSA-5693568;Reactome: R-HSA-5358606;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-5358565;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938	"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Processing of DNA double-strand break ends";"Regulation of TP53 Activity through Phosphorylation";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)"
JAMg_model_12049.2	52	Reactome: R-HSA-9018519;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-76061;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-5250924;Reactome: R-HSA-72203;Reactome: R-HSA-76042;Reactome: R-HSA-6803529;Reactome: R-HSA-5601884;Reactome: R-HSA-1834949;Reactome: R-HSA-73980;Reactome: R-HSA-73776;Reactome: R-HSA-73772;Reactome: R-HSA-6782135;Reactome: R-HSA-76071;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-76066;Reactome: R-HSA-73762;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-5617472;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-77075;Reactome: R-HSA-72086;Reactome: R-HSA-6781823;Reactome: R-HSA-167238;Reactome: R-HSA-73863;Reactome: R-HSA-749476;Reactome: R-HSA-72163;Reactome: R-HSA-5578749;Reactome: R-HSA-427413;Reactome: R-HSA-167160;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-168325;Reactome: R-HSA-6781827;Reactome: R-HSA-6807505;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-203927;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-73780	"Estrogen-dependent gene expression";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"B-WICH complex positively regulates rRNA expression";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing";"PIWI-interacting RNA (piRNA) biogenesis";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Termination";"RNA Polymerase II Promoter Escape";"RNA Polymerase I Promoter Escape";"Dual incision in TC-NER";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase I Transcription Initiation";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Capping";"Formation of TC-NER Pre-Incision Complex";"Pausing and recovery of Tat-mediated HIV elongation";"RNA Polymerase I Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation";"mRNA Splicing - Major Pathway";"Transcriptional regulation by small RNAs";"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Viral Messenger RNA Synthesis";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA polymerase II transcribes snRNA genes";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"MicroRNA (miRNA) biogenesis";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"RNA Polymerase III Chain Elongation"
JAMg_model_9043.3	9	Reactome: R-HSA-2151201;Reactome: R-HSA-1368108;Reactome: R-HSA-2426168;Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-400253;Reactome: R-HSA-1368082;Reactome: R-HSA-1989781;Reactome: R-HSA-5617472	"Transcriptional activation of mitochondrial biogenesis";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Activation of gene expression by SREBF (SREBP)";"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"Circadian Clock";"RORA activates gene expression";"PPARA activates gene expression";"Activation of anterior HOX genes in hindbrain development during early embryogenesis"
JAMg_model_19474.1	3	Reactome: R-HSA-2206302;Reactome: R-HSA-2024096;Reactome: R-HSA-2024101	"MPS I - Hurler syndrome";"HS-GAG degradation";"CS/DS degradation"
JAMg_model_24.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-5628897	"Respiratory electron transport";"TP53 Regulates Metabolic Genes"
JAMg_model_15049.3	5	Reactome: R-HSA-204005;Reactome: R-HSA-5694530;Reactome: R-HSA-983170;Reactome: R-HSA-1655829;Reactome: R-HSA-2132295	"COPII-mediated vesicle transport";"Cargo concentration in the ER";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"MHC class II antigen presentation"
JAMg_model_14370.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_18413.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_20738.6	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_1151.2	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_7461.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_11273.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_9054.4	3	KEGG: 00330+2.3.1.57;MetaCyc: PWY-6117;MetaCyc: PWY-0	"Arginine and proline metabolism";"Spermine and spermidine degradation I";"Putrescine degradation III"
JAMg_model_7235.1	6	Reactome: R-HSA-5693568;Reactome: R-HSA-5693554;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825;Reactome: R-HSA-5685942;Reactome: R-HSA-5693579	"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis";"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange"
JAMg_model_21258.3	8	Reactome: R-HSA-1222556;MetaCyc: PWY-7980;KEGG: 00190+7.1.2.2;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;KEGG: 00195+7.1.2.2;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"ROS and RNS production in phagocytes";"ATP biosynthesis";"Oxidative phosphorylation";"Ion channel transport";"Amino acids regulate mTORC1";"Photosynthesis";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_10657.2	2	Reactome: R-HSA-72163;Reactome: R-HSA-72165	"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_13700.1	2	Reactome: R-HSA-1799339;Reactome: R-HSA-446203	"SRP-dependent cotranslational protein targeting to membrane";"Asparagine N-linked glycosylation"
JAMg_model_9932.5	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_11724.1	13	MetaCyc: PWY-6370;KEGG: 00980+2.5.1.18;KEGG: 00982+2.5.1.18;Reactome: R-HSA-196836;KEGG: 00480+2.5.1.18+1.8.5.1;MetaCyc: PWY-4061;MetaCyc: PWY-7533;KEGG: 00983+2.5.1.18;MetaCyc: PWY-2261;KEGG: 00053+1.8.5.1;MetaCyc: PWY-7112;Reactome: R-HSA-156590;MetaCyc: PWY-6842	"Ascorbate recycling (cytosolic)";"Metabolism of xenobiotics by cytochrome P450";"Drug metabolism - cytochrome P450";"Vitamin C (ascorbate) metabolism";"Glutathione metabolism";"Glutathione-mediated detoxification I";"Gliotoxin biosynthesis";"Drug metabolism - other enzymes";"Ascorbate glutathione cycle";"Ascorbate and aldarate metabolism";"4-hydroxy-2-nonenal detoxification";"Glutathione conjugation";"Glutathione-mediated detoxification II"
JAMg_model_4371.3	5	Reactome: R-HSA-1834949;Reactome: R-HSA-5693571;Reactome: R-HSA-6798695;Reactome: R-HSA-164843;Reactome: R-HSA-3270619	"Cytosolic sensors of pathogen-associated DNA";"Nonhomologous End-Joining (NHEJ)";"Neutrophil degranulation";"2-LTR circle formation";"IRF3-mediated induction of type I IFN"
JAMg_model_3843.1	2	Reactome: R-HSA-427413;Reactome: R-HSA-3214847	"NoRC negatively regulates rRNA expression";"HATs acetylate histones"
JAMg_model_17161.4	5	MetaCyc: PWY-3821;KEGG: 00520+2.7.1.6;KEGG: 00052+2.7.1.6;MetaCyc: PWY-6527;MetaCyc: PWY-6317	"D-galactose detoxification";"Amino sugar and nucleotide sugar metabolism";"Galactose metabolism";"Stachyose degradation";"D-galactose degradation I (Leloir pathway)"
JAMg_model_6608.1	20	KEGG: 00020+2.3.3.8;MetaCyc: PWY-5392;Reactome: R-HSA-163765;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5538;MetaCyc: PWY-5172;KEGG: 00720+2.3.3.8;Reactome: R-HSA-6798695;MetaCyc: PWY-6728;MetaCyc: PWY-5913;MetaCyc: PWY-6969;Reactome: R-HSA-1268020;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5537;Reactome: R-HSA-71403;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-7384;Reactome: R-HSA-75105	"Citrate cycle (TCA cycle)";"Reductive TCA cycle II";"ChREBP activates metabolic gene expression";"Carbon fixation pathways in prokaryotes";"Pyruvate fermentation to acetate VI";"Acetyl-coa biosynthesis III (from citrate)";"Carbon fixation pathways in prokaryotes";"Neutrophil degranulation";"Methylaspartate cycle";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Mitochondrial protein import";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Pyruvate fermentation to acetate V";"Citric acid cycle (TCA cycle)";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Fatty acyl-CoA biosynthesis"
JAMg_model_13274.1	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_1571.3	3	Reactome: R-HSA-390471;Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Association of TriC/CCT with target proteins during biosynthesis";"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_13540.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_18147.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_5119.2	11	Reactome: R-HSA-69017;Reactome: R-HSA-176187;Reactome: R-HSA-68689;Reactome: R-HSA-113507;Reactome: R-HSA-68867;Reactome: R-HSA-68827;Reactome: R-HSA-68616;Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-69205;Reactome: R-HSA-1362277	"CDK-mediated phosphorylation and removal of Cdc6";"Activation of ATR in response to replication stress";"CDC6 association with the ORC:origin complex";"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the pre-replicative complex";"CDT1 association with the CDC6:ORC:origin complex";"Assembly of the ORC complex at the origin of replication";"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"G1/S-Specific Transcription";"Transcription of E2F targets under negative control by DREAM complex"
JAMg_model_16196.1	2	Reactome: R-HSA-74259;KEGG: 00230+3.6.1.66	"Purine catabolism";"Purine metabolism"
JAMg_model_5615.1	9	Reactome: R-HSA-193648;Reactome: R-HSA-2871796;Reactome: R-HSA-194840;Reactome: R-HSA-114604;Reactome: R-HSA-5218920;Reactome: R-HSA-2871809;Reactome: R-HSA-4420097;Reactome: R-HSA-416482;Reactome: R-HSA-2029482	"NRAGE signals death through JNK";"FCERI mediated MAPK activation";"Rho GTPase cycle";"GPVI-mediated activation cascade";"VEGFR2 mediated vascular permeability";"FCERI mediated Ca+2 mobilization";"VEGFA-VEGFR2 Pathway";"G alpha (12/13) signalling events";"Regulation of actin dynamics for phagocytic cup formation"
JAMg_model_6073.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_13773.1	7	Reactome: R-HSA-6804758;Reactome: R-HSA-427389;Reactome: R-HSA-3214815;Reactome: R-HSA-9610379;Reactome: R-HSA-73762;Reactome: R-HSA-8943724;Reactome: R-HSA-917729	"Regulation of TP53 Activity through Acetylation";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"HDACs deacetylate histones";"HCMV Late Events";"RNA Polymerase I Transcription Initiation";"Regulation of PTEN gene transcription";"Endosomal Sorting Complex Required For Transport (ESCRT)"
JAMg_model_3129.1	1	Reactome: R-HSA-2514853	"Condensation of Prometaphase Chromosomes"
JAMg_model_7256.3	3	Reactome: R-HSA-5620916;Reactome: R-HSA-264876;Reactome: R-HSA-1445148	"VxPx cargo-targeting to cilium";"Insulin processing";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_11816.3	1	Reactome: R-HSA-70635	"Urea cycle"
JAMg_model_20604.1	1	Reactome: R-HSA-389977	"Post-chaperonin tubulin folding pathway"
JAMg_model_7189.4	12	KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885;Reactome: R-HSA-193648;Reactome: R-HSA-416476;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-194840;KEGG: 04714+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1	"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events";"Human cytomegalovirus infection";"DCC mediated attractive signaling";"NRAGE signals death through JNK";"G alpha (q) signalling events";"Relaxin signaling pathway";"Human papillomavirus infection";"Rho GTPase cycle";"Thermogenesis";"mTOR signaling pathway";"PI3K-Akt signaling pathway"
JAMg_model_4987.2	29	Reactome: R-HSA-5358606;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-174437;Reactome: R-HSA-68962;Reactome: R-HSA-5696397;Reactome: R-HSA-5358565;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-176187;Reactome: R-HSA-69166;Reactome: R-HSA-6782210;Reactome: R-HSA-3371511;Reactome: R-HSA-3108214;Reactome: R-HSA-912446;Reactome: R-HSA-3371453;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-110314;Reactome: R-HSA-6804756;Reactome: R-HSA-5655862;Reactome: R-HSA-6783310;Reactome: R-HSA-6782135;Reactome: R-HSA-110312;Reactome: R-HSA-5696400	"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Removal of the Flap Intermediate from the C-strand";"Activation of the pre-replicative complex";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Activation of ATR in response to replication stress";"Removal of the Flap Intermediate";"Gap-filling DNA repair synthesis and ligation in TC-NER";"HSF1 activation";"SUMOylation of DNA damage response and repair proteins";"Meiotic recombination";"Regulation of HSF1-mediated heat shock response";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation";"Translesion synthesis by POLK";"Fanconi Anemia Pathway";"Dual incision in TC-NER";"Translesion synthesis by REV1";"Dual Incision in GG-NER"
JAMg_model_12281.1	2	Reactome: R-HSA-5205685;Reactome: R-HSA-983231	"Pink/Parkin Mediated Mitophagy";"Factors involved in megakaryocyte development and platelet production"
JAMg_model_4971.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_8589.2	7	Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-8854518;Reactome: R-HSA-2565942	"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_1730.3	3	KEGG: 00970+6.1.1.4;Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Aminoacyl-tRNA biosynthesis";"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_16498.1	2	MetaCyc: PWY-4261;KEGG: 00561+2.7.1.30	"Glycerol degradation I";"Glycerolipid metabolism"
JAMg_model_238.3	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_10213.2	8	Reactome: R-HSA-163754;Reactome: R-HSA-6791462;MetaCyc: PWY-1861;Reactome: R-HSA-6791055;KEGG: 00030+2.2.1.2;Reactome: R-HSA-71336;MetaCyc: PWY-5723;Reactome: R-HSA-8950505	"Insulin effects increased synthesis of Xylulose-5-Phosphate";"TALDO1 deficiency: failed conversion of Fru(6)P, E4P to SH7P, GA3P";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"TALDO1 deficiency: failed conversion of SH7P, GA3P to Fru(6)P, E4P";"Pentose phosphate pathway";"Pentose phosphate pathway";"Rubisco shunt";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_5966.1	3	Reactome: R-HSA-70350;KEGG: 00051+2.7.1.3;Reactome: R-HSA-5657562	"Fructose catabolism";"Fructose and mannose metabolism";"Essential fructosuria"
JAMg_model_21315.1	15	KEGG: 00620+2.7.1.40;MetaCyc: PWY-6142;Reactome: R-HSA-70171;MetaCyc: PWY-7003;MetaCyc: PWY-6886;MetaCyc: PWY-8004;MetaCyc: PWY-2221;MetaCyc: PWY-5723;KEGG: 00230+2.7.1.40;KEGG: 00010+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-7383;MetaCyc: PWY-7218	"Pyruvate metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Glycerol degradation to butanol";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Rubisco shunt";"Purine metabolism";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)"
JAMg_model_19648.3	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_9315.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_9186.6	6	KEGG: 00561+2.7.1.107;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;MetaCyc: PWY-7817;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039	"Glycerolipid metabolism";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule"
JAMg_model_10273.1	31	MetaCyc: PWY-8012;MetaCyc: PWY-6519;Reactome: R-HSA-2426168;MetaCyc: PWY-6799;MetaCyc: PWY-6282;MetaCyc: PWY-6113;MetaCyc: PWY-4381;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-5973;Reactome: R-HSA-75105;MetaCyc: PWY-5966-1;MetaCyc: PWY-7664;Reactome: R-HSA-9029558;MetaCyc: PWY-5989;MetaCyc: PWY-5147;Reactome: R-HSA-163765;MetaCyc: PWY-5142;MetaCyc: PWY-8047;MetaCyc: PWY-8049;MetaCyc: PWY-7858;MetaCyc: PWY-5971;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWY-7388;MetaCyc: PWY-5366;MetaCyc: PWY-7663;MetaCyc: PWY-7723;Reactome: R-HSA-199220;MetaCyc: PWY-5994;MetaCyc: PWY-5367;MetaCyc: PWY-7746;MetaCyc: PWYG-321	"Mupirocin biosynthesis";"8-amino-7-oxononanoate biosynthesis I";"Activation of gene expression by SREBF (SREBP)";"Fatty acid biosynthesis initiation (plant mitochondria)";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Superpathway of mycolate biosynthesis";"Fatty acid biosynthesis initiation (bacteria and plants)";"Biotin metabolism";"Cis-vaccenate biosynthesis";"Fatty acyl-CoA biosynthesis";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Oleate biosynthesis IV (anaerobic)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Stearate biosynthesis II (bacteria and plants)";"Oleate biosynthesis I (plants)";"ChREBP activates metabolic gene expression";"Acyl-[acyl-carrier protein] thioesterase pathway";"Bryostatin biosynthesis";"Pederin biosynthesis";"(5Z)-dodecenoate biosynthesis II";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Fatty acid biosynthesis";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Palmitoleate biosynthesis II (plants and bacteria)";"Gondoate biosynthesis (anaerobic)";"Bacterial bioluminescence";"Vitamin B5 (pantothenate) metabolism";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Petroselinate biosynthesis";"Mycobacterial sulfolipid biosynthesis";""
JAMg_model_15739.1	6	Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-6798695;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556	"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Neutrophil degranulation";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes"
JAMg_model_9186.2	6	MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7817;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;KEGG: 00561+2.7.1.107	"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Glycerolipid metabolism"
JAMg_model_2359.1	30	KEGG: 05163+2.7.11.1;Reactome: R-HSA-1358803;Reactome: R-HSA-211163;Reactome: R-HSA-5628897;Reactome: R-HSA-6804758;KEGG: 05170+2.7.11.1;Reactome: R-HSA-389357;Reactome: R-HSA-199418;Reactome: R-HSA-198693;Reactome: R-HSA-111447;Reactome: R-HSA-9634638;Reactome: R-HSA-8941332;Reactome: R-HSA-5218920;Reactome: R-HSA-392451;Reactome: R-HSA-5674400;Reactome: R-HSA-69656;Reactome: R-HSA-6804757;KEGG: 04714+2.7.11.1;Reactome: R-HSA-8948751;Reactome: R-HSA-198323;Reactome: R-HSA-69202;Reactome: R-HSA-1257604;Reactome: R-HSA-9614399;KEGG: 04150+2.7.11.1;Reactome: R-HSA-6804759;KEGG: 04151+2.7.11.1;Reactome: R-HSA-389513;KEGG: 04926+2.7.11.1;Reactome: R-HSA-8876198;KEGG: 05165+2.7.11.1	"Human cytomegalovirus infection";"Downregulation of ERBB2:ERBB3 signaling";"AKT-mediated inactivation of FOXO1A";"TP53 Regulates Metabolic Genes";"Regulation of TP53 Activity through Acetylation";"Human immunodeficiency virus 1 infection";"CD28 dependent PI3K/Akt signaling";"Negative regulation of the PI3K/AKT network";"AKT phosphorylates targets in the nucleus";"Activation of BAD and translocation to mitochondria";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"RUNX2 regulates genes involved in cell migration";"VEGFR2 mediated vascular permeability";"G beta:gamma signalling through PI3Kgamma";"Constitutive Signaling by AKT1 E17K in Cancer";"Cyclin A:Cdk2-associated events at S phase entry";"Regulation of TP53 Degradation";"Thermogenesis";"Regulation of PTEN stability and activity";"AKT phosphorylates targets in the cytosol";"Cyclin E associated events during G1/S transition";"PIP3 activates AKT signaling";"Regulation of localization of FOXO transcription factors";"mTOR signaling pathway";"Regulation of TP53 Activity through Association with Co-factors";"PI3K-Akt signaling pathway";"CTLA4 inhibitory signaling";"Relaxin signaling pathway";"RAB GEFs exchange GTP for GDP on RABs";"Human papillomavirus infection"
JAMg_model_15023.1	1	Reactome: R-HSA-112126	"ALKBH3 mediated reversal of alkylation damage"
JAMg_model_8400.1	2	Reactome: R-HSA-6784531;Reactome: R-HSA-6791226	"tRNA processing in the nucleus";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_16534.1	3	Reactome: R-HSA-381038;Reactome: R-HSA-381426;Reactome: R-HSA-8957275	"XBP1(S) activates chaperone genes";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation"
JAMg_model_18325.7	2	Reactome: R-HSA-390522;Reactome: R-HSA-445355	"Striated Muscle Contraction";"Smooth Muscle Contraction"
JAMg_model_7862.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_4776.1	2	Reactome: R-HSA-8876725;Reactome: R-HSA-3371453	"Protein methylation";"Regulation of HSF1-mediated heat shock response"
JAMg_model_5373.1	3	Reactome: R-HSA-2132295;Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_872.2	4	MetaCyc: PWY-7805;KEGG: 00190+3.6.1.1;Reactome: R-HSA-71737;MetaCyc: PWY-7807	"(aminomethyl)phosphonate degradation";"Oxidative phosphorylation";"Pyrophosphate hydrolysis";"Glyphosate degradation III"
JAMg_model_16589.6	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_14022.1	1	Reactome: R-HSA-375276	"Peptide ligand-binding receptors"
JAMg_model_15573.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_7606.1	20	Reactome: R-HSA-5696397;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-5685938;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-69091;Reactome: R-HSA-6782135;Reactome: R-HSA-5655862;Reactome: R-HSA-110314;Reactome: R-HSA-6804756;Reactome: R-HSA-174411;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121	"Gap-filling DNA repair synthesis and ligation in GG-NER";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"HDR through Single Strand Annealing (SSA)";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Polymerase switching";"Dual incision in TC-NER";"Translesion synthesis by POLK";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation";"Polymerase switching on the C-strand of the telomere";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI"
JAMg_model_1940.1	1	Reactome: R-HSA-379726	"Mitochondrial tRNA aminoacylation"
JAMg_model_18438.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_16805.1	7	Reactome: R-HSA-9020265;Reactome: R-HSA-9018681;Reactome: R-HSA-6798695;Reactome: R-HSA-2142691;Reactome: R-HSA-9023661;Reactome: R-HSA-9018676;Reactome: R-HSA-9018896	"Biosynthesis of aspirin-triggered D-series resolvins";"Biosynthesis of protectins";"Neutrophil degranulation";"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Biosynthesis of E-series 18(R)-resolvins";"Biosynthesis of D-series resolvins";"Biosynthesis of E-series 18(S)-resolvins"
JAMg_model_8560.4	24	Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-983189;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497	"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Kinesins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)"
JAMg_model_1274.2	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_18134.1	5	MetaCyc: PWY-5083;KEGG: 00760+2.7.1.23;MetaCyc: PWY-7268;Reactome: R-HSA-196807;MetaCyc: PWY-7269	"NAD/NADH phosphorylation and dephosphorylation";"Nicotinate and nicotinamide metabolism";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Nicotinate metabolism";"NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)"
JAMg_model_6846.1	7	KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-7214;MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824	"Phenylpropanoid biosynthesis";"Betanidin degradation";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis"
JAMg_model_18918.5	3	Reactome: R-HSA-70268;MetaCyc: PWY-5386;KEGG: 00620+4.4.1.5	"Pyruvate metabolism";"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_10881.1	4	Reactome: R-HSA-8934903;Reactome: R-HSA-936440;Reactome: R-HSA-5205685;Reactome: R-HSA-1632852	"Receptor Mediated Mitophagy";"Negative regulators of DDX58/IFIH1 signaling";"Pink/Parkin Mediated Mitophagy";"Macroautophagy"
JAMg_model_6807.1	5	KEGG: 00290+4.2.1.33;KEGG: 00020+4.2.1.3;KEGG: 00720+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00630+4.2.1.3	"Valine, leucine and isoleucine biosynthesis";"Citrate cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Iron uptake and transport";"Glyoxylate and dicarboxylate metabolism"
JAMg_model_16740.1	1	Reactome: R-HSA-427413	"NoRC negatively regulates rRNA expression"
JAMg_model_907.9	8	Reactome: R-HSA-5140745;Reactome: R-HSA-5099900;Reactome: R-HSA-3928665;Reactome: R-HSA-432720;Reactome: R-HSA-190873;Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4";"EPH-ephrin mediated repulsion of cells";"Lysosome Vesicle Biogenesis";"Gap junction degradation";"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_8904.1	12	Reactome: R-HSA-193692;Reactome: R-HSA-1251985;Reactome: R-HSA-2660826;Reactome: R-HSA-1442490;Reactome: R-HSA-177929;Reactome: R-HSA-2644606;Reactome: R-HSA-5362798;Reactome: R-HSA-982772;Reactome: R-HSA-75893;Reactome: R-HSA-2691232;Reactome: R-HSA-2122948;Reactome: R-HSA-2894862	"Regulated proteolysis of p75NTR";"Nuclear signaling by ERBB4";"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Collagen degradation";"Signaling by EGFR";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Release of Hh-Np from the secreting cell";"Growth hormone receptor signaling";"TNF signaling";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Activated NOTCH1 Transmits Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants"
JAMg_model_671.1	6	Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-6804756;Reactome: R-HSA-176187;Reactome: R-HSA-5685938	"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Regulation of TP53 Activity through Phosphorylation";"Activation of ATR in response to replication stress";"HDR through Single Strand Annealing (SSA)"
JAMg_model_9889.1	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_16106.1	10	KEGG: 00710+2.7.2.3;MetaCyc: PWY-7003;Reactome: R-HSA-70171;KEGG: 00010+2.7.2.3;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-5484;Reactome: R-HSA-70263;MetaCyc: PWY-6886;MetaCyc: PWY-8004	"Carbon fixation in photosynthetic organisms";"Glycerol degradation to butanol";"Glycolysis";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Gluconeogenesis";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I"
JAMg_model_18100.6	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_20891.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_8031.3	3	KEGG: 00790+2.10.1.1;Reactome: R-HSA-947581;MetaCyc: PWY-6823	"Folate biosynthesis";"Molybdenum cofactor biosynthesis";"Molybdenum cofactor biosynthesis"
JAMg_model_9516.1	1	Reactome: R-HSA-1221632	"Meiotic synapsis"
JAMg_model_18440.1	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_11882.2	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_7975.2	6	Reactome: R-HSA-9615017;Reactome: R-HSA-3299685;MetaCyc: PWY-6854;Reactome: R-HSA-8862803;Reactome: R-HSA-8950505;Reactome: R-HSA-2151201	"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)";"Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_16685.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_19399.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11795.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_7998.5	2	Reactome: R-HSA-1296052;Reactome: R-HSA-418457	"Ca2+ activated K+ channels";"cGMP effects"
JAMg_model_14502.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_14760.3	2	Reactome: R-HSA-1483166;Reactome: R-HSA-1483148	"Synthesis of PA";"Synthesis of PG"
JAMg_model_14838.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_562.1	19	Reactome: R-HSA-8957275;Reactome: R-HSA-3000480;Reactome: R-HSA-8964038;Reactome: R-HSA-5686938;Reactome: R-HSA-202733;Reactome: R-HSA-3000471;Reactome: R-HSA-8856825;Reactome: R-HSA-3000484;Reactome: R-HSA-8856828;Reactome: R-HSA-8964026;Reactome: R-HSA-8964041;Reactome: R-HSA-8964046;Reactome: R-HSA-8963901;Reactome: R-HSA-3000497;Reactome: R-HSA-432142;Reactome: R-HSA-381426;Reactome: R-HSA-975634;Reactome: R-HSA-8866423;Reactome: R-HSA-8963888	"Post-translational protein phosphorylation";"Scavenging by Class A Receptors";"LDL clearance";"Regulation of TLR by endogenous ligand";"Cell surface interactions at the vascular wall";"Scavenging by Class B Receptors";"Cargo recognition for clathrin-mediated endocytosis";"Scavenging by Class F Receptors";"Clathrin-mediated endocytosis";"Chylomicron clearance";"LDL remodeling";"VLDL clearance";"Chylomicron remodeling";"Scavenging by Class H Receptors";"Platelet sensitization by LDL";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Retinoid metabolism and transport";"VLDL assembly";"Chylomicron assembly"
JAMg_model_5401.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_1335.3	7	Reactome: R-HSA-2691232;Reactome: R-HSA-2644606;Reactome: R-HSA-9013507;Reactome: R-HSA-2979096;Reactome: R-HSA-2894862;MetaCyc: PWY-7511;Reactome: R-HSA-2122948	"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Protein ubiquitination";"Activated NOTCH1 Transmits Signal to the Nucleus"
JAMg_model_12710.1	6	KEGG: 00730+2.7.6.2;MetaCyc: PWY-7356;MetaCyc: PWY-6908;MetaCyc: PWY-6907;MetaCyc: PWY-6898;Reactome: R-HSA-196819	"Thiamine metabolism";"Thiamine salvage IV (yeast)";"Thiamine diphosphate biosynthesis IV (eukaryotes)";"Thiamine diphosphate biosynthesis III (Staphylococcus)";"Thiamine salvage III";"Vitamin B1 (thiamin) metabolism"
JAMg_model_471.1	4	Reactome: R-HSA-70921;KEGG: 00340+2.1.2.5;MetaCyc: PWY-5030;KEGG: 00670+2.1.2.5	"Histidine catabolism";"Histidine metabolism";"L-histidine degradation III";"One carbon pool by folate"
JAMg_model_9184.2	6	Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;MetaCyc: PWY-7817	"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_8826.3	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_11905.2	25	Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-6811434;Reactome: R-HSA-380270;Reactome: R-HSA-8955332;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-983189;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609690;Reactome: R-HSA-68877	"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"COPI-dependent Golgi-to-ER retrograde traffic";"Recruitment of mitotic centrosome proteins and complexes";"Carboxyterminal post-translational modifications of tubulin";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"Kinesins";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HCMV Early Events";"Mitotic Prometaphase"
JAMg_model_6410.1	2	Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4292.1	4	Reactome: R-HSA-5673001;Reactome: R-HSA-6807878;Reactome: R-HSA-375165;Reactome: R-HSA-445095	"RAF/MAP kinase cascade";"COPI-mediated anterograde transport";"NCAM signaling for neurite out-growth";"Interaction between L1 and Ankyrins"
JAMg_model_18194.3	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_15470.2	57	Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253	"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex"
JAMg_model_3644.1	7	KEGG: 00230+2.4.2.7;Reactome: R-HSA-74217;MetaCyc: PWY-7805;MetaCyc: PWY-6610;MetaCyc: PWY-7807;MetaCyc: PWY-6605;Reactome: R-HSA-6798695	"Purine metabolism";"Purine salvage";"(aminomethyl)phosphonate degradation";"Adenine salvage";"Glyphosate degradation III";"Adenine and adenosine salvage II";"Neutrophil degranulation"
JAMg_model_13781.1	1	Reactome: R-HSA-1971475	"A tetrasaccharide linker sequence is required for GAG synthesis"
JAMg_model_6691.1	6	Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733	"Wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis"
JAMg_model_9370.1	6	Reactome: R-HSA-912446;Reactome: R-HSA-5693616;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693554	"Meiotic recombination";"Presynaptic phase of homologous DNA pairing and strand exchange";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_7108.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_14120.2	11	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-450302;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-171007;KEGG: 05163+2.7.11.1;Reactome: R-HSA-2559580;Reactome: R-HSA-4420097;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human papillomavirus infection";"activated TAK1 mediates p38 MAPK activation";"Thermogenesis";"Relaxin signaling pathway";"p38MAPK events";"Human cytomegalovirus infection";"Oxidative Stress Induced Senescence";"VEGFA-VEGFR2 Pathway";"Human immunodeficiency virus 1 infection"
JAMg_model_12174.3	1	KEGG: 00970+6.1.1.9	"Aminoacyl-tRNA biosynthesis"
JAMg_model_4474.2	6	MetaCyc: PWY-6807;KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23	"Xyloglucan degradation II (exoglucanase)";"Galactose metabolism";"Other glycan degradation";"Glycosaminoglycan degradation";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series"
JAMg_model_669.1	4	Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.10;KEGG: 00450+6.1.1.10;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis";"Selenocompound metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_3792.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-445095	"Phase 0 - rapid depolarisation";"Interaction between L1 and Ankyrins"
JAMg_model_5588.5	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_11904.3	2	MetaCyc: PWY-5386;KEGG: 00620+3.1.2.6	"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_14275.1	12	Reactome: R-HSA-141444;Reactome: R-HSA-163560;Reactome: R-HSA-5663220;KEGG: 05235+3.1.3.16;Reactome: R-HSA-68877;KEGG: 04658+3.1.3.16;Reactome: R-HSA-400253;Reactome: R-HSA-2467813;KEGG: 04660+3.1.3.16;Reactome: R-HSA-2500257;Reactome: R-HSA-2173788;Reactome: R-HSA-9648025	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Triglyceride catabolism";"RHO GTPases Activate Formins";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Mitotic Prometaphase";"Th1 and Th2 cell differentiation";"Circadian Clock";"Separation of Sister Chromatids";"T cell receptor signaling pathway";"Resolution of Sister Chromatid Cohesion";"Downregulation of TGF-beta receptor signaling";"EML4 and NUDC in mitotic spindle formation"
JAMg_model_10683.3	1	Reactome: R-HSA-880009	"Interconversion of 2-oxoglutarate and 2-hydroxyglutarate"
JAMg_model_1523.1	2	Reactome: R-HSA-1268020;Reactome: R-HSA-8949613	"Mitochondrial protein import";"Cristae formation"
JAMg_model_12368.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_7495.1	1	Reactome: R-HSA-191859	"snRNP Assembly"
JAMg_model_8077.2	5	Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-912446;Reactome: R-HSA-5693568;Reactome: R-HSA-5693554	"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Meiotic recombination";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_14591.1	22	Reactome: R-HSA-389513;Reactome: R-HSA-5467340;Reactome: R-HSA-196299;Reactome: R-HSA-5673000;Reactome: R-HSA-141444;Reactome: R-HSA-6811558;Reactome: R-HSA-195253;Reactome: R-HSA-5663220;Reactome: R-HSA-432142;Reactome: R-HSA-5339716;Reactome: R-HSA-4641262;Reactome: R-HSA-5358747;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-5358751;Reactome: R-HSA-9648025;Reactome: R-HSA-5467337;Reactome: R-HSA-5675221;Reactome: R-HSA-5358749;Reactome: R-HSA-5467348;Reactome: R-HSA-5358752;Reactome: R-HSA-68877	"CTLA4 inhibitory signaling";"AXIN missense mutants destabilize the destruction complex";"Beta-catenin phosphorylation cascade";"RAF activation";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Degradation of beta-catenin by the destruction complex";"RHO GTPases Activate Formins";"Platelet sensitization by LDL";"Misspliced GSK3beta mutants stabilize beta-catenin";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"S33 mutants of beta-catenin aren't phosphorylated";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"S45 mutants of beta-catenin aren't phosphorylated";"EML4 and NUDC in mitotic spindle formation";"APC truncation mutants have impaired AXIN binding";"Negative regulation of MAPK pathway";"S37 mutants of beta-catenin aren't phosphorylated";"Truncations of AMER1 destabilize the destruction complex";"T41 mutants of beta-catenin aren't phosphorylated";"Mitotic Prometaphase"
JAMg_model_20377.1	1	Reactome: R-HSA-72731	"Recycling of eIF2:GDP"
JAMg_model_7002.1	1	MetaCyc: PWY-7437	"Protein O-[N-acetyl]-glucosylation"
JAMg_model_990.3	14	KEGG: 00670+2.1.2.1;MetaCyc: PWY-5497;MetaCyc: PWY-1622;MetaCyc: PWY-2201;KEGG: 00260+2.1.2.1;MetaCyc: PWY-2161;MetaCyc: PWY-181;MetaCyc: PWY-3661;MetaCyc: PWY-3661-1;Reactome: R-HSA-196757;MetaCyc: PWY-3841;KEGG: 00460+2.1.2.1;KEGG: 00630+2.1.2.1;KEGG: 00680+2.1.2.1	"One carbon pool by folate";"Purine nucleobases degradation II (anaerobic)";"Formaldehyde assimilation I (serine pathway)";"Folate transformations I";"Glycine, serine and threonine metabolism";"Folate polyglutamylation";"Photorespiration ";"Glycine betaine degradation I";"Glycine betaine degradation II (mammalian)";"Metabolism of folate and pterines";"Folate transformations II (plants)";"Cyanoamino acid metabolism";"Glyoxylate and dicarboxylate metabolism";"Methane metabolism"
JAMg_model_9781.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_10740.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_9707.2	4	Reactome: R-HSA-1799339;Reactome: R-HSA-422085;Reactome: R-HSA-381771;Reactome: R-HSA-400511	"SRP-dependent cotranslational protein targeting to membrane";"Synthesis, secretion, and deacylation of Ghrelin";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)"
JAMg_model_3582.1	57	Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091	"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells"
JAMg_model_866.1	2	Reactome: R-HSA-8853659;Reactome: R-HSA-5673001	"RET signaling";"RAF/MAP kinase cascade"
JAMg_model_11895.4	5	MetaCyc: PWY-5531;KEGG: 00860+4.1.1.37;MetaCyc: PWY-7766;Reactome: R-HSA-189451;MetaCyc: PWY-7159	"3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)";"Porphyrin and chlorophyll metabolism";"Heme b biosynthesis IV (Gram-positive bacteria)";"Heme biosynthesis";"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)"
JAMg_model_15403.1	2	Reactome: R-HSA-5689880;Reactome: R-HSA-3214847	"Ub-specific processing proteases";"HATs acetylate histones"
JAMg_model_15494.3	2	Reactome: R-HSA-5625740;KEGG: 04070+2.7.11.13	"RHO GTPases activate PKNs";"Phosphatidylinositol signaling system"
JAMg_model_13434.1	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_17000.2	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_9797.6	1	Reactome: R-HSA-191273	"Cholesterol biosynthesis"
JAMg_model_20787.11	32	Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-77075;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-167160;Reactome: R-HSA-72163;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-72203;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-167162;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-9018519;Reactome: R-HSA-75955;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-73776	"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"RNA Pol II CTD phosphorylation and interaction with CE";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"mRNA Splicing - Major Pathway";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"Processing of Capped Intron-Containing Pre-mRNA";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II HIV Promoter Escape";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Estrogen-dependent gene expression";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Promoter Escape"
JAMg_model_2167.1	13	Reactome: R-HSA-2022090;Reactome: R-HSA-8948216;Reactome: R-HSA-1650814;Reactome: R-HSA-2214320;Reactome: R-HSA-3000171;Reactome: R-HSA-2243919;Reactome: R-HSA-186797;Reactome: R-HSA-3000157;Reactome: R-HSA-1474244;Reactome: R-HSA-3000178;Reactome: R-HSA-216083;Reactome: R-HSA-1442490;Reactome: R-HSA-419037	"Assembly of collagen fibrils and other multimeric structures";"Collagen chain trimerization";"Collagen biosynthesis and modifying enzymes";"Anchoring fibril formation";"Non-integrin membrane-ECM interactions";"Crosslinking of collagen fibrils";"Signaling by PDGF";"Laminin interactions";"Extracellular matrix organization";"ECM proteoglycans";"Integrin cell surface interactions";"Collagen degradation";"NCAM1 interactions"
JAMg_model_514.1	8	Reactome: R-HSA-8854518;Reactome: R-HSA-5620912;Reactome: R-HSA-6798695;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"Anchoring of the basal body to the plasma membrane";"Neutrophil degranulation";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_15969.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_18967.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_14540.2	2	MetaCyc: PWY-6854;Reactome: R-HSA-3299685	"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species"
JAMg_model_5321.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_9207.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_2586.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_17281.5	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_9948.1	3	Reactome: R-HSA-5663213;Reactome: R-HSA-4420097;Reactome: R-HSA-2029482	"RHO GTPases Activate WASPs and WAVEs";"VEGFA-VEGFR2 Pathway";"Regulation of actin dynamics for phagocytic cup formation"
JAMg_model_6030.1	2	Reactome: R-HSA-5689880;Reactome: R-HSA-1632852	"Ub-specific processing proteases";"Macroautophagy"
JAMg_model_2207.1	5	Reactome: R-HSA-3214815;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-350054;Reactome: R-HSA-2644606	"HDACs deacetylate histones";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_13843.2	5	MetaCyc: PWY-6527;KEGG: 00603+3.2.1.22;KEGG: 00052+3.2.1.22;KEGG: 00561+3.2.1.22;KEGG: 00600+3.2.1.22	"Stachyose degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Galactose metabolism";"Glycerolipid metabolism";"Sphingolipid metabolism"
JAMg_model_13316.3	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_6885.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_17785.4	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_13501.2	6	Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72706	"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_18910.3	1	Reactome: R-HSA-2142789	"Ubiquinol biosynthesis"
JAMg_model_5567.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_10881.3	4	Reactome: R-HSA-1632852;Reactome: R-HSA-5205685;Reactome: R-HSA-936440;Reactome: R-HSA-8934903	"Macroautophagy";"Pink/Parkin Mediated Mitophagy";"Negative regulators of DDX58/IFIH1 signaling";"Receptor Mediated Mitophagy"
JAMg_model_2073.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_17608.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_11385.1	2	Reactome: R-HSA-389661;Reactome: R-HSA-9033241	"Glyoxylate metabolism and glycine degradation";"Peroxisomal protein import"
JAMg_model_12652.1	1	Reactome: R-HSA-373080	"Class B/2 (Secretin family receptors)"
JAMg_model_6691.2	6	MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733	"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis"
JAMg_model_308.3	2	Reactome: R-HSA-6798695;Reactome: R-HSA-1660661	"Neutrophil degranulation";"Sphingolipid de novo biosynthesis"
JAMg_model_8393.3	2	Reactome: R-HSA-2408508;Reactome: R-HSA-389661	"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Glyoxylate metabolism and glycine degradation"
JAMg_model_20400.1	6	Reactome: R-HSA-6782210;Reactome: R-HSA-6781823;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-72163;Reactome: R-HSA-6798695	"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of TC-NER Pre-Incision Complex";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"mRNA Splicing - Major Pathway";"Neutrophil degranulation"
JAMg_model_7997.1	2	Reactome: R-HSA-418457;Reactome: R-HSA-1296052	"cGMP effects";"Ca2+ activated K+ channels"
JAMg_model_7190.3	12	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;KEGG: 04926+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Thermogenesis";"Rho GTPase cycle";"Human papillomavirus infection";"G alpha (q) signalling events";"NRAGE signals death through JNK";"Relaxin signaling pathway";"DCC mediated attractive signaling";"Human cytomegalovirus infection";"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection"
JAMg_model_5588.1	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_19131.4	14	KEGG: 00561+3.1.3.4;Reactome: R-HSA-1483213;MetaCyc: PWY-8051;KEGG: 00565+3.1.3.4;Reactome: R-HSA-75109;Reactome: R-HSA-4419969;KEGG: 00600+3.1.3.4;Reactome: R-HSA-1483191;MetaCyc: PWY-8053;MetaCyc: PWY-7782;MetaCyc: PWY-8052;MetaCyc: PWY-6453;MetaCyc: PWY-8055;KEGG: 00564+3.1.3.4	"Glycerolipid metabolism";"Synthesis of PE";"Anandamide biosynthesis I";"Ether lipid metabolism";"Triglyceride biosynthesis";"Depolymerisation of the Nuclear Lamina";"Sphingolipid metabolism";"Synthesis of PC";"Anandamide biosynthesis II";"Plasmalogen biosynthesis";"2-arachidonoylglycerol biosynthesis";"Stigma estolide biosynthesis";"Palmitoyl ethanolamide biosynthesis";"Glycerophospholipid metabolism"
JAMg_model_885.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_5169.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_2344.1	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_2408.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_18798.1	1	Reactome: R-HSA-5627083	"RHO GTPases regulate CFTR trafficking"
JAMg_model_2993.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_9544.2	1	Reactome: R-HSA-6804760	"Regulation of TP53 Activity through Methylation"
JAMg_model_18048.1	5	KEGG: 00520+3.5.99.6;MetaCyc: PWY-6855;MetaCyc: PWY-5514;Reactome: R-HSA-70171;MetaCyc: PWY-6906	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Glycolysis";"Chitin derivatives degradation"
JAMg_model_13191.1	9	Reactome: R-HSA-416476;MetaCyc: PWY-6351;MetaCyc: PWY-8052;KEGG: 00562+3.1.4.11;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;MetaCyc: PWY-7039;KEGG: 04070+3.1.4.11;Reactome: R-HSA-112043	"G alpha (q) signalling events";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"Inositol phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"Phosphatidate metabolism, as a signaling molecule";"Phosphatidylinositol signaling system";"PLC beta mediated events"
JAMg_model_7411.1	3	MetaCyc: PWY-7533;Reactome: R-HSA-5423646;Reactome: R-HSA-2142691	"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_2713.1	6	Reactome: R-HSA-196807;KEGG: 00760+6.3.1.5;MetaCyc: PWY-7761;MetaCyc: PWY-5653;MetaCyc: PWY-5381;KEGG: 00760+6.3.5.1	"Nicotinate metabolism";"Nicotinate and nicotinamide metabolism";"NAD salvage pathway II (PNC IV cycle)";"NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde";"Pyridine nucleotide cycling (plants)";"Nicotinate and nicotinamide metabolism"
JAMg_model_4151.2	1	KEGG: 00450+1.8.1.9	"Selenocompound metabolism"
JAMg_model_10754.1	3	Reactome: R-HSA-391160;KEGG: 04660+2.7.10.2;Reactome: R-HSA-4420097	"Signal regulatory protein family interactions";"T cell receptor signaling pathway";"VEGFA-VEGFR2 Pathway"
JAMg_model_12573.4	18	MetaCyc: PWY-5392;KEGG: 00630+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-7115;KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-6728;KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00710+1.1.1.37;MetaCyc: PWY-1622;MetaCyc: PWY-5690;Reactome: R-HSA-70263;MetaCyc: PWY-7383;KEGG: 00020+1.1.1.37;MetaCyc: PWY-561	"Reductive TCA cycle II";"Glyoxylate and dicarboxylate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Pyruvate metabolism";"Methane metabolism";"Methylaspartate cycle";"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation I (serine pathway)";"TCA cycle II (plants and fungi)";"Gluconeogenesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"Citrate cycle (TCA cycle)";"Superpathway of glyoxylate cycle and fatty acid degradation"
JAMg_model_2503.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_4117.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_2017.3	5	Reactome: R-HSA-1368108;MetaCyc: PWY-5381;Reactome: R-HSA-197264;Reactome: R-HSA-6798695;KEGG: 00760+6.3.4.21	"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Pyridine nucleotide cycling (plants)";"Nicotinamide salvaging";"Neutrophil degranulation";"Nicotinate and nicotinamide metabolism"
JAMg_model_15933.2	1	KEGG: 00270+2.1.1.37	"Cysteine and methionine metabolism"
JAMg_model_194.1	16	Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_8547.3	5	Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-380994;Reactome: R-HSA-450604;Reactome: R-HSA-430039	"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_15870.5	8	KEGG: 00051+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00052+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1	"Fructose and mannose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Galactose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism";"Streptomycin biosynthesis";"Starch and sucrose metabolism"
JAMg_model_6411.1	2	Reactome: R-HSA-8866654;MetaCyc: PWY-7511	"E3 ubiquitin ligases ubiquitinate target proteins";"Protein ubiquitination"
JAMg_model_1583.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_9948.5	3	Reactome: R-HSA-5663213;Reactome: R-HSA-2029482;Reactome: R-HSA-4420097	"RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation";"VEGFA-VEGFR2 Pathway"
JAMg_model_13905.1	27	Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-159236;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-159227;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-168276;Reactome: R-HSA-170822	"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein"
JAMg_model_1124.4	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878	"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport"
JAMg_model_235.1	5	Reactome: R-HSA-8964539;MetaCyc: PWY-4981;MetaCyc: PWY-6344;MetaCyc: PWY-3341;KEGG: 00330+1.5.1.2	"Glutamate and glutamine metabolism";"L-proline biosynthesis II (from arginine)";"L-ornithine degradation II (Stickland reaction)";"L-proline biosynthesis III (from L-ornithine)";"Arginine and proline metabolism"
JAMg_model_15419.1	5	Reactome: R-HSA-9615710;Reactome: R-HSA-917729;Reactome: R-HSA-162588;Reactome: R-HSA-174490;Reactome: R-HSA-9610379	"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Budding and maturation of HIV virion";"Membrane binding and targetting of GAG proteins";"HCMV Late Events"
JAMg_model_13388.2	7	Reactome: R-HSA-1834949;Reactome: R-HSA-76061;Reactome: R-HSA-73780;Reactome: R-HSA-76066;Reactome: R-HSA-76071;Reactome: R-HSA-73980;Reactome: R-HSA-749476	"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_7593.1	2	Reactome: R-HSA-418457;Reactome: R-HSA-4086398	"cGMP effects";"Ca2+ pathway"
JAMg_model_1554.2	8	Reactome: R-HSA-8953750;Reactome: R-HSA-111459;Reactome: R-HSA-111463;Reactome: R-HSA-9627069;Reactome: R-HSA-111458;Reactome: R-HSA-111464;Reactome: R-HSA-6803207;Reactome: R-HSA-6798695	"Transcriptional Regulation by E2F6";"Activation of caspases through apoptosome-mediated cleavage";"SMAC (DIABLO) binds to IAPs";"Regulation of the apoptosome activity";"Formation of apoptosome";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"TP53 Regulates Transcription of Caspase Activators and Caspases";"Neutrophil degranulation"
JAMg_model_6229.1	3	Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway"
JAMg_model_8468.1	3	Reactome: R-HSA-5423646;MetaCyc: PWY-7533;Reactome: R-HSA-2142691	"Aflatoxin activation and detoxification";"Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_13671.7	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_10427.2	3	Reactome: R-HSA-983168;Reactome: R-HSA-8951664;Reactome: R-HSA-5689880	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation";"Ub-specific processing proteases"
JAMg_model_3039.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_6292.2	1	KEGG: 00970+6.1.1.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_17106.1	1	MetaCyc: PWY-7799	"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_16703.2	1	Reactome: R-HSA-3108214	"SUMOylation of DNA damage response and repair proteins"
JAMg_model_14820.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_602.1	13	Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764	"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination"
JAMg_model_6993.1	2	Reactome: R-HSA-72163;Reactome: R-HSA-72165	"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_5433.5	4	Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"ROS and RNS production in phagocytes";"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_9215.1	12	MetaCyc: PWY-5872;Reactome: R-HSA-2142789;MetaCyc: PWY-7230;MetaCyc: PWY-6708;MetaCyc: PWY-5873;MetaCyc: PWY-5855;MetaCyc: PWY-5871;KEGG: 00130+1.14.99.60;MetaCyc: PWY-5856;MetaCyc: PWY-5857;MetaCyc: PWY-7233;MetaCyc: PWY-5870	"Ubiquinol-10 biosynthesis (eukaryotic)";"Ubiquinol biosynthesis";"Ubiquinol-6 biosynthesis from 4-aminobenzoate (yeast)";"Ubiquinol-8 biosynthesis (prokaryotic)";"Ubiquinol-7 biosynthesis (eukaryotic)";"Ubiquinol-7 biosynthesis (prokaryotic)";"Ubiquinol-9 biosynthesis (eukaryotic)";"Ubiquinone and other terpenoid-quinone biosynthesis";"Ubiquinol-9 biosynthesis (prokaryotic)";"Ubiquinol-10 biosynthesis (prokaryotic)";"Ubiquinol-6 bypass biosynthesis (eukaryotic)";"Ubiquinol-8 biosynthesis (eukaryotic)"
JAMg_model_17664.4	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_4871.1	4	KEGG: 00520+3.2.1.14;MetaCyc: PWY-7822;MetaCyc: PWY-6902;MetaCyc: PWY-6855	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Chitin degradation I (archaea)"
JAMg_model_3038.1	4	Reactome: R-HSA-8866427;Reactome: R-HSA-9031525;Reactome: R-HSA-983168;MetaCyc: PWY-7511	"VLDLR internalisation and degradation";"NR1H2 & NR1H3 regulate gene expression to limit cholesterol uptake";"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_8298.9	4	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-1912420	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Pre-NOTCH Processing in Golgi"
JAMg_model_15494.2	2	Reactome: R-HSA-5625740;KEGG: 04070+2.7.11.13	"RHO GTPases activate PKNs";"Phosphatidylinositol signaling system"
JAMg_model_947.3	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_18865.4	6	KEGG: 00260+2.6.1.52;KEGG: 00680+2.6.1.52;MetaCyc: PWY-8010;KEGG: 00270+2.6.1.52;KEGG: 00750+2.6.1.52;Reactome: R-HSA-977347	"Glycine, serine and threonine metabolism";"Methane metabolism";"L-cysteine biosynthesis IX (Trichomonas vaginalis)";"Cysteine and methionine metabolism";"Vitamin B6 metabolism";"Serine biosynthesis"
JAMg_model_2842.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4861.1	2	MetaCyc: PWY-6829;Reactome: R-HSA-6782315	"Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol"
JAMg_model_17834.2	3	MetaCyc: PWY-6689;Reactome: R-HSA-6784531;MetaCyc: PWY-7803	"Trna splicing I";"tRNA processing in the nucleus";"Trna splicing II"
JAMg_model_18184.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_16428.2	4	KEGG: 00564+3.1.1.32;MetaCyc: PWY-6803;KEGG: 00592+3.1.1.32;MetaCyc: PWY-8051	"Glycerophospholipid metabolism";"Phosphatidylcholine acyl editing";"alpha-Linolenic acid metabolism";"Anandamide biosynthesis I"
JAMg_model_3669.3	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_2187.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_957.9	4	Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-5625970;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"RHO GTPases activate KTN1";"Kinesins"
JAMg_model_5804.1	2	KEGG: 00290+4.3.1.19;KEGG: 00260+4.3.1.19	"Valine, leucine and isoleucine biosynthesis";"Glycine, serine and threonine metabolism"
JAMg_model_19513.2	2	Reactome: R-HSA-8949664;Reactome: R-HSA-8949215	"Processing of SMDT1";"Mitochondrial calcium ion transport"
JAMg_model_13860.1	7	KEGG: 05163+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1	"Human cytomegalovirus infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"Human papillomavirus infection";"Thermogenesis"
JAMg_model_16444.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_10201.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_4541.3	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_12772.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_11645.4	5	Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288	"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1"
JAMg_model_18440.2	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_13531.1	14	MetaCyc: PWY-7725;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-5080;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7035;MetaCyc: PWY-5972;Reactome: R-HSA-75876;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7619	"Arachidonate biosynthesis V (8-detaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Juniperonate biosynthesis"
JAMg_model_11570.1	5	Reactome: R-HSA-5693565;Reactome: R-HSA-5689901;Reactome: R-HSA-5693571;Reactome: R-HSA-69473;Reactome: R-HSA-5693607	"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Metalloprotease DUBs";"Nonhomologous End-Joining (NHEJ)";"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends"
JAMg_model_10419.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_14414.1	3	Reactome: R-HSA-193681;Reactome: R-HSA-1660662;Reactome: R-HSA-5626978	"Ceramide signalling";"Glycosphingolipid metabolism";"TNFR1-mediated ceramide production"
JAMg_model_4350.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_20513.1	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_20917.1	7	KEGG: 05163+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1	"Human cytomegalovirus infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection"
JAMg_model_8159.6	12	MetaCyc: PWY-1861;MetaCyc: PWY-6142;Reactome: R-HSA-70171;KEGG: 00030+4.1.2.13;MetaCyc: PWY-7385;KEGG: 00051+4.1.2.13;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00680+4.1.2.13;KEGG: 00710+4.1.2.13;MetaCyc: PWY-1042;MetaCyc: PWY-5484	"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Pentose phosphate pathway";"1,3-propanediol biosynthesis (engineered)";"Fructose and mannose metabolism";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Methane metabolism";"Carbon fixation in photosynthetic organisms";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)"
JAMg_model_11800.1	13	MetaCyc: PWY-6859;MetaCyc: PWY-7102;MetaCyc: PWY-5122;KEGG: 00900+2.5.1.10+2.5.1.1;MetaCyc: PWY-7182;MetaCyc: PWY-7709;MetaCyc: PWY-7721;MetaCyc: PWY-6383;MetaCyc: PWY-7410;MetaCyc: PWY-7141;MetaCyc: PWY-5123;MetaCyc: PWY-7659;MetaCyc: PWY-7736	"All-trans-farnesol biosynthesis";"Bisabolene biosynthesis (engineered)";"Geranyl diphosphate biosynthesis";"Terpenoid backbone biosynthesis";"Linalool biosynthesis I";"(3R)-linalool biosynthesis";"Methyl phomopsenoate biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"Ipsdienol biosynthesis";"(3S)-linalool biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"Viridicatumtoxin biosynthesis";"Stellatic acid biosynthesis"
JAMg_model_15621.3	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_19735.2	14	KEGG: 00591+3.1.1.4;MetaCyc: PWY-8053;MetaCyc: PWY-7783;Reactome: R-HSA-1482788;MetaCyc: PWY-8051;KEGG: 00592+3.1.1.4;Reactome: R-HSA-975634;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;MetaCyc: PWY-6803;MetaCyc: PWY-7416;KEGG: 00590+3.1.1.4;KEGG: 00564+3.1.1.4+3.1.1.5;MetaCyc: PWY-7409	"Linoleic acid metabolism";"Anandamide biosynthesis II";"Plasmalogen degradation";"Acyl chain remodelling of PC";"Anandamide biosynthesis I";"alpha-Linolenic acid metabolism";"Retinoid metabolism and transport";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Phosphatidylcholine acyl editing";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Arachidonic acid metabolism";"Glycerophospholipid metabolism";"Phospholipid remodeling (phosphatidylethanolamine, yeast)"
JAMg_model_18015.3	5	Reactome: R-HSA-2122947;Reactome: R-HSA-2894862;Reactome: R-HSA-3214815;Reactome: R-HSA-2644606;Reactome: R-HSA-350054	"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"HDACs deacetylate histones";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Notch-HLH transcription pathway"
JAMg_model_20930.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_1396.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_17489.3	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_2463.2	1	Reactome: R-HSA-427975	"Proton/oligopeptide cotransporters"
JAMg_model_11590.1	4	Reactome: R-HSA-8856825;Reactome: R-HSA-5696394;Reactome: R-HSA-8951664;Reactome: R-HSA-6781823	"Cargo recognition for clathrin-mediated endocytosis";"DNA Damage Recognition in GG-NER";"Neddylation";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_10060.1	2	KEGG: 00260+2.3.1.29;Reactome: R-HSA-8849175	"Glycine, serine and threonine metabolism";"Threonine catabolism"
JAMg_model_11142.1	4	KEGG: 00520+3.2.1.14;MetaCyc: PWY-6902;MetaCyc: PWY-7822;MetaCyc: PWY-6855	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Chitin degradation I (archaea)"
JAMg_model_6449.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_18891.3	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_9895.9	10	MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2;Reactome: R-HSA-5609977;MetaCyc: PWY-6397;Reactome: R-HSA-70370;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6527;MetaCyc: PWY-3821;MetaCyc: PWY-6317;MetaCyc: PWY-7344	"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Galactose catabolism";"Galactose metabolism";"Stachyose degradation";"D-galactose detoxification";"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis"
JAMg_model_11172.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_938.1	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_395.1	1	Reactome: R-HSA-430039	"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_397.1	43	Reactome: R-HSA-427389;Reactome: R-HSA-2559582;Reactome: R-HSA-3214815;Reactome: R-HSA-432722;Reactome: R-HSA-5617472;Reactome: R-HSA-8939236;Reactome: R-HSA-3214841;Reactome: R-HSA-171306;Reactome: R-HSA-8936459;Reactome: R-HSA-606279;Reactome: R-HSA-1912408;Reactome: R-HSA-9610379;Reactome: R-HSA-427413;Reactome: R-HSA-2559586;Reactome: R-HSA-5578749;Reactome: R-HSA-2559580;Reactome: R-HSA-110330;Reactome: R-HSA-110331;Reactome: R-HSA-1221632;Reactome: R-HSA-912446;Reactome: R-HSA-5693571;Reactome: R-HSA-73728;Reactome: R-HSA-3214842;Reactome: R-HSA-5693607;Reactome: R-HSA-9018519;Reactome: R-HSA-4551638;Reactome: R-HSA-2299718;Reactome: R-HSA-201722;Reactome: R-HSA-110329;Reactome: R-HSA-5250924;Reactome: R-HSA-427359;Reactome: R-HSA-69473;Reactome: R-HSA-212300;Reactome: R-HSA-110328;Reactome: R-HSA-5625886;Reactome: R-HSA-5693565;Reactome: R-HSA-73772;Reactome: R-HSA-977225;Reactome: R-HSA-5334118;Reactome: R-HSA-9609690;Reactome: R-HSA-3214847;Reactome: R-HSA-9616222;Reactome: R-HSA-3214858	"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"Senescence-Associated Secretory Phenotype (SASP)";"HDACs deacetylate histones";"Golgi Associated Vesicle Biogenesis";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"PKMTs methylate histone lysines";"Packaging Of Telomere Ends";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Deposition of new CENPA-containing nucleosomes at the centromere";"Pre-NOTCH Transcription and Translation";"HCMV Late Events";"NoRC negatively regulates rRNA expression";"DNA Damage/Telomere Stress Induced Senescence";"Transcriptional regulation by small RNAs";"Oxidative Stress Induced Senescence";"Recognition and association of DNA glycosylase with site containing an affected purine";"Cleavage of the damaged purine";"Meiotic synapsis";"Meiotic recombination";"Nonhomologous End-Joining (NHEJ)";"RNA Polymerase I Promoter Opening";"HDMs demethylate histones";"Processing of DNA double-strand break ends";"Estrogen-dependent gene expression";"SUMOylation of chromatin organization proteins";"Condensation of Prophase Chromosomes";"Formation of the beta-catenin:TCF transactivating complex";"Cleavage of the damaged pyrimidine";"B-WICH complex positively regulates rRNA expression";"SIRT1 negatively regulates rRNA expression";"G2/M DNA damage checkpoint";"PRC2 methylates histones and DNA";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"RNA Polymerase I Promoter Escape";"Amyloid fiber formation";"DNA methylation";"HCMV Early Events";"HATs acetylate histones";"Transcriptional regulation of granulopoiesis";"RMTs methylate histone arginines"
JAMg_model_12762.1	27	Reactome: R-HSA-3232142;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-4570464;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-170822;Reactome: R-HSA-168276;Reactome: R-HSA-159236;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377	"SUMOylation of ubiquitinylation proteins";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Transcriptional regulation by small RNAs";"SUMOylation of RNA binding proteins";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NS1 Mediated Effects on Host Pathways";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins"
JAMg_model_7420.2	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_5470.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_1897.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_5904.1	16	Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72695;Reactome: R-HSA-72706	"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Viral mRNA Translation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_9947.5	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_1040.3	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_361.7	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_1994.1	15	Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884;Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-1912408;Reactome: R-HSA-4086398;Reactome: R-HSA-2559580;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128	"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Pre-NOTCH Transcription and Translation";"Ca2+ pathway";"Oxidative Stress Induced Senescence";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling"
JAMg_model_21165.2	7	Reactome: R-HSA-3108214;Reactome: R-HSA-2470946;Reactome: R-HSA-1221632;Reactome: R-HSA-2468052;Reactome: R-HSA-9018519;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813	"SUMOylation of DNA damage response and repair proteins";"Cohesin Loading onto Chromatin";"Meiotic synapsis";"Establishment of Sister Chromatid Cohesion";"Estrogen-dependent gene expression";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids"
JAMg_model_10854.5	6	Reactome: R-HSA-5685938;Reactome: R-HSA-176187;Reactome: R-HSA-5693616;Reactome: R-HSA-6804756;Reactome: R-HSA-69473;Reactome: R-HSA-5693607	"HDR through Single Strand Annealing (SSA)";"Activation of ATR in response to replication stress";"Presynaptic phase of homologous DNA pairing and strand exchange";"Regulation of TP53 Activity through Phosphorylation";"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends"
JAMg_model_11575.1	1	Reactome: R-HSA-197264	"Nicotinamide salvaging"
JAMg_model_3553.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_1467.1	1	Reactome: R-HSA-176974	"Unwinding of DNA"
JAMg_model_10134.8	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_1758.1	6	Reactome: R-HSA-389957;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-5620922;Reactome: R-HSA-389960;Reactome: R-HSA-6814122	"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_361.2	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_14657.1	4	Reactome: R-HSA-3371497;Reactome: R-HSA-8939211;Reactome: R-HSA-3371568;Reactome: R-HSA-9018519	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"ESR-mediated signaling";"Attenuation phase";"Estrogen-dependent gene expression"
JAMg_model_6589.4	3	KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16	"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway"
JAMg_model_440.2	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_14877.1	2	Reactome: R-HSA-749476;Reactome: R-HSA-73980	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination"
JAMg_model_16827.2	6	Reactome: R-HSA-6803207;Reactome: R-HSA-139915;Reactome: R-HSA-6803211;Reactome: R-HSA-6804759;Reactome: R-HSA-6803204;Reactome: R-HSA-6803205	"TP53 Regulates Transcription of Caspase Activators and Caspases";"Activation of PUMA and translocation to mitochondria";"TP53 Regulates Transcription of Death Receptors and Ligands";"Regulation of TP53 Activity through Association with Co-factors";"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain"
JAMg_model_14654.5	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_13715.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_20268.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_19093.1	7	MetaCyc: PWY-5188;Reactome: R-HSA-6782315;Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.15;KEGG: 00860+6.1.1.17;Reactome: R-HSA-379716;KEGG: 00970+6.1.1.17	"Tetrapyrrole biosynthesis I (from glutamate)";"tRNA modification in the nucleus and cytosol";"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis";"Porphyrin and chlorophyll metabolism";"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_6708.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_5107.1	6	Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444	"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_8082.1	1	Reactome: R-HSA-162658	"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_20586.2	3	Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_11456.2	7	Reactome: R-HSA-72163;Reactome: R-HSA-6782135;MetaCyc: PWY-7511;Reactome: R-HSA-6781827;Reactome: R-HSA-8951664;Reactome: R-HSA-6781823;Reactome: R-HSA-6782210	"mRNA Splicing - Major Pathway";"Dual incision in TC-NER";"Protein ubiquitination";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Neddylation";"Formation of TC-NER Pre-Incision Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER"
JAMg_model_18696.1	5	Reactome: R-HSA-193648;Reactome: R-HSA-194840;Reactome: R-HSA-8964616;Reactome: R-HSA-416482;Reactome: R-HSA-446388	"NRAGE signals death through JNK";"Rho GTPase cycle";"G beta:gamma signalling through CDC42";"G alpha (12/13) signalling events";"Regulation of cytoskeletal remodeling and cell spreading by IPP complex components"
JAMg_model_6028.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_542.1	2	Reactome: R-HSA-446193;Reactome: R-HSA-4570571	"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective RFT1 causes RFT1-CDG (CDG-1n)"
JAMg_model_11978.5	2	Reactome: R-HSA-5689880;MetaCyc: PWY-7511	"Ub-specific processing proteases";"Protein ubiquitination"
JAMg_model_13054.8	4	MetaCyc: PWY-7174;MetaCyc: PWY-4361;KEGG: 00270+5.3.1.23;Reactome: R-HSA-1237112	"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism";"Methionine salvage pathway"
JAMg_model_3429.1	4	Reactome: R-HSA-975871;Reactome: R-HSA-975138;Reactome: R-HSA-6799198;Reactome: R-HSA-166058	"MyD88 cascade initiated on plasma membrane";"TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation";"Complex I biogenesis";"MyD88:MAL(TIRAP) cascade initiated on plasma membrane"
JAMg_model_4349.2	8	Reactome: R-HSA-4615885;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-165054;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813	"SUMOylation of DNA replication proteins";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"Rev-mediated nuclear export of HIV RNA";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids"
JAMg_model_13054.3	3	KEGG: 00270+5.3.1.23;MetaCyc: PWY-7174;MetaCyc: PWY-4361	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I"
JAMg_model_4541.5	7	Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_14652.1	13	Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689	"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits"
JAMg_model_8435.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_5303.3	4	Reactome: R-HSA-4755583;Reactome: R-HSA-446199;KEGG: 00510+2.7.1.108;MetaCyc: PWY-6129	"Defective DOLK causes DOLK-CDG (CDG-1m)";"Synthesis of Dolichyl-phosphate";"N-Glycan biosynthesis";"Dolichol and dolichyl phosphate biosynthesis"
JAMg_model_8938.1	6	Reactome: R-HSA-163210;KEGG: 00190+7.1.2.2;Reactome: R-HSA-1268020;MetaCyc: PWY-7980;KEGG: 00195+7.1.2.2;Reactome: R-HSA-8949613	"Formation of ATP by chemiosmotic coupling";"Oxidative phosphorylation";"Mitochondrial protein import";"ATP biosynthesis";"Photosynthesis";"Cristae formation"
JAMg_model_16084.1	2	KEGG: 00380+1.13.11.11;Reactome: R-HSA-71240	"Tryptophan metabolism";"Tryptophan catabolism"
JAMg_model_8628.1	2	KEGG: 00500+3.2.1.4;MetaCyc: PWY-6788	"Starch and sucrose metabolism";"Cellulose degradation II (fungi)"
JAMg_model_21250.2	4	Reactome: R-HSA-77595;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-73856	"Processing of Intronless Pre-mRNAs";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination"
JAMg_model_10101.2	3	Reactome: R-HSA-1445148;Reactome: R-HSA-264876;Reactome: R-HSA-5620916	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing";"VxPx cargo-targeting to cilium"
JAMg_model_10093.4	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_11786.1	2	Reactome: R-HSA-9010553;Reactome: R-HSA-975957	"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_9310.3	4	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8;Reactome: R-HSA-2161541;Reactome: R-HSA-499943	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Abacavir metabolism";"Interconversion of nucleotide di- and triphosphates"
JAMg_model_17514.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_12723.2	2	KEGG: 00450+2.7.9.3;MetaCyc: PWY-6281	"Selenocompound metabolism";"L-selenocysteine biosynthesis II (archaea and eukaryotes)"
JAMg_model_20198.1	4	MetaCyc: PWY-7494;MetaCyc: PWY-3722;Reactome: R-HSA-6798163;KEGG: 00260+1.2.1.8+1.1.99.1	"Choline degradation IV";"Glycine betaine biosynthesis II (Gram-positive bacteria)";"Choline catabolism";"Glycine, serine and threonine metabolism"
JAMg_model_261.1	5	Reactome: R-HSA-4793954;MetaCyc: PWY-7918;MetaCyc: PWY-7919;Reactome: R-HSA-532668;KEGG: 00510+3.2.1.106	"Defective MOGS causes MOGS-CDG (CDG-2b)";"Protein N-glycosylation processing phase (yeast)";"Protein N-glycosylation processing phase (plants and animals)";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"N-Glycan biosynthesis"
JAMg_model_13352.1	24	Reactome: R-HSA-418217;Reactome: R-HSA-456926;Reactome: R-HSA-418592;Reactome: R-HSA-381676;Reactome: R-HSA-428930;Reactome: R-HSA-432040;Reactome: R-HSA-418594;Reactome: R-HSA-163359;Reactome: R-HSA-9009391;Reactome: R-HSA-392851;Reactome: R-HSA-4086398;Reactome: R-HSA-392170;Reactome: R-HSA-202040;Reactome: R-HSA-500657;Reactome: R-HSA-418555;Reactome: R-HSA-392451;Reactome: R-HSA-6814122;Reactome: R-HSA-416476;Reactome: R-HSA-8964315;Reactome: R-HSA-8964616;Reactome: R-HSA-420092;Reactome: R-HSA-418597;Reactome: R-HSA-400042;Reactome: R-HSA-416482	"G beta:gamma signalling through PLC beta";"Thrombin signalling through proteinase activated receptors (PARs)";"ADP signalling through P2Y purinoceptor 1";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Thromboxane signalling through TP receptor";"Vasopressin regulates renal water homeostasis via Aquaporins";"G alpha (i) signalling events";"Glucagon signaling in metabolic regulation";"Extra-nuclear estrogen signaling";"Prostacyclin signalling through prostacyclin receptor";"Ca2+ pathway";"ADP signalling through P2Y purinoceptor 12";"G-protein activation";"Presynaptic function of Kainate receptors";"G alpha (s) signalling events";"G beta:gamma signalling through PI3Kgamma";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"G alpha (q) signalling events";"G beta:gamma signalling through BTK";"G beta:gamma signalling through CDC42";"Glucagon-type ligand receptors";"G alpha (z) signalling events";"Adrenaline,noradrenaline inhibits insulin secretion";"G alpha (12/13) signalling events"
JAMg_model_12723.1	2	KEGG: 00450+2.7.9.3;MetaCyc: PWY-6281	"Selenocompound metabolism";"L-selenocysteine biosynthesis II (archaea and eukaryotes)"
JAMg_model_18681.5	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_17942.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_6807.8	5	KEGG: 00720+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00630+4.2.1.3;KEGG: 00020+4.2.1.3;KEGG: 00290+4.2.1.33	"Carbon fixation pathways in prokaryotes";"Iron uptake and transport";"Glyoxylate and dicarboxylate metabolism";"Citrate cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis"
JAMg_model_16083.1	2	MetaCyc: PWY-7800;MetaCyc: PWY-7799	"Ac/N-end rule pathway";"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_11270.1	4	Reactome: R-HSA-3000170;Reactome: R-HSA-3000178;Reactome: R-HSA-216083;Reactome: R-HSA-2129379	"Syndecan interactions";"ECM proteoglycans";"Integrin cell surface interactions";"Molecules associated with elastic fibres"
JAMg_model_10975.3	2	Reactome: R-HSA-8876198;Reactome: R-HSA-6811436	"RAB GEFs exchange GTP for GDP on RABs";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_4493.1	3	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-749476	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_10713.3	2	Reactome: R-HSA-163210;Reactome: R-HSA-8949613	"Formation of ATP by chemiosmotic coupling";"Cristae formation"
JAMg_model_11712.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_1709.2	3	Reactome: R-HSA-5656121;Reactome: R-HSA-5655862;Reactome: R-HSA-110312	"Translesion synthesis by POLI";"Translesion synthesis by POLK";"Translesion synthesis by REV1"
JAMg_model_19670.2	5	Reactome: R-HSA-68827;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68867;Reactome: R-HSA-69205	"CDT1 association with the CDC6:ORC:origin complex";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Assembly of the pre-replicative complex";"G1/S-Specific Transcription"
JAMg_model_13054.13	3	KEGG: 00270+5.3.1.23;MetaCyc: PWY-7174;MetaCyc: PWY-4361	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I"
JAMg_model_19003.3	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_7640.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_13088.1	3	Reactome: R-HSA-6798695;Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"Neutrophil degranulation";"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_5281.1	5	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport"
JAMg_model_11252.4	9	MetaCyc: PWY-7411;Reactome: R-HSA-1483166;MetaCyc: PWY-7385;KEGG: 00564+1.1.1.94;KEGG: 00564+1.1.1.8;MetaCyc: PWY-5981;MetaCyc: PWY-6118;MetaCyc: PWY-5667;MetaCyc: PWY-7902	"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"1,3-propanediol biosynthesis (engineered)";"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"CDP-diacylglycerol biosynthesis III";"Glycerol-3-phosphate shuttle";"CDP-diacylglycerol biosynthesis I";"Glucosylglycerol biosynthesis"
JAMg_model_16773.2	27	Reactome: R-HSA-4570464;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-3232142;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-168333;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-4615885;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-1169408;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-6784531;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-159236;Reactome: R-HSA-4085377;Reactome: R-HSA-4551638	"SUMOylation of RNA binding proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"SUMOylation of ubiquitinylation proteins";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA replication proteins";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"ISG15 antiviral mechanism";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"tRNA processing in the nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins"
JAMg_model_4909.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_324.1	5	Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-912446;Reactome: R-HSA-5693568;Reactome: R-HSA-5693554	"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Meiotic recombination";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_7015.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_20791.3	14	Reactome: R-HSA-167200;Reactome: R-HSA-167243;Reactome: R-HSA-167238;Reactome: R-HSA-167290;Reactome: R-HSA-6796648;Reactome: R-HSA-167152;Reactome: R-HSA-112382;Reactome: R-HSA-167242;Reactome: R-HSA-167287;Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-167158;Reactome: R-HSA-113418	"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of Tat-mediated HIV elongation";"Pausing and recovery of HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV elongation complex in the absence of HIV Tat";"Formation of RNA Pol II elongation complex";"Abortive elongation of HIV-1 transcript in the absence of Tat";"HIV elongation arrest and recovery";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex"
JAMg_model_10992.3	2	MetaCyc: PWY-6854;Reactome: R-HSA-3299685	"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species"
JAMg_model_13184.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_20117.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_12337.4	26	Reactome: R-HSA-1989781;Reactome: R-HSA-5621575;Reactome: R-HSA-3134973;Reactome: R-HSA-2122947;Reactome: R-HSA-1368082;Reactome: R-HSA-9013695;Reactome: R-HSA-9013508;Reactome: R-HSA-3214847;Reactome: R-HSA-381340;Reactome: R-HSA-9617629;Reactome: R-HSA-2644606;Reactome: R-HSA-9614657;Reactome: R-HSA-3371568;Reactome: R-HSA-5617472;Reactome: R-HSA-918233;Reactome: R-HSA-9018519;Reactome: R-HSA-400253;Reactome: R-HSA-2894862;Reactome: R-HSA-8866907;Reactome: R-HSA-1234158;Reactome: R-HSA-8941856;Reactome: R-HSA-3899300;Reactome: R-HSA-1912408;Reactome: R-HSA-210744;Reactome: R-HSA-933541;Reactome: R-HSA-201722	"PPARA activates gene expression";"CD209 (DC-SIGN) signaling";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production";"NOTCH1 Intracellular Domain Regulates Transcription";"RORA activates gene expression";"NOTCH4 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"HATs acetylate histones";"Transcriptional regulation of white adipocyte differentiation";"Regulation of FOXO transcriptional activity by acetylation";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"FOXO-mediated transcription of cell death genes";"Attenuation phase";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"TRAF3-dependent IRF activation pathway";"Estrogen-dependent gene expression";"Circadian Clock";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Activation of the TFAP2 (AP-2) family of transcription factors";"Regulation of gene expression by Hypoxia-inducible Factor";"RUNX3 regulates NOTCH signaling";"SUMOylation of transcription cofactors";"Pre-NOTCH Transcription and Translation";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"TRAF6 mediated IRF7 activation";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_5587.4	2	Reactome: R-HSA-445095;Reactome: R-HSA-6807878	"Interaction between L1 and Ankyrins";"COPI-mediated anterograde transport"
JAMg_model_980.3	1	Reactome: R-HSA-8856828	"Clathrin-mediated endocytosis"
JAMg_model_16809.1	2	Reactome: R-HSA-380270;Reactome: R-HSA-380320	"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_15678.1	26	MetaCyc: PWY-7007;MetaCyc: PWY-7726;MetaCyc: PWY-7606;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7291;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-7338;MetaCyc: PWY-7288;MetaCyc: PWY-7656;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7858;KEGG: 00592+1.3.3.6;Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-7574;MetaCyc: PWY-7337;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6;MetaCyc: PWY-5884;MetaCyc: PWY-6920;MetaCyc: PWY-7340;Reactome: R-HSA-9033241;MetaCyc: PWY-5136	"Methyl ketone biosynthesis (engineered)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Propanoate metabolism";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Spodoptera littoralis pheromone biosynthesis";"Fatty acid degradation";"(5Z)-dodecenoate biosynthesis II";"alpha-Linolenic acid metabolism";"Wax biosynthesis";"Plasmalogen biosynthesis";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism";"Wax esters biosynthesis I";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Peroxisomal protein import";"Fatty acid beta-oxidation II (plant peroxisome)"
JAMg_model_16422.2	6	KEGG: 04070+2.7.11.13;Reactome: R-HSA-416993;Reactome: R-HSA-418597;Reactome: R-HSA-5099900;Reactome: R-HSA-114516;Reactome: R-HSA-76005	"Phosphatidylinositol signaling system";"Trafficking of GluR2-containing AMPA receptors";"G alpha (z) signalling events";"WNT5A-dependent internalization of FZD4";"Disinhibition of SNARE formation";"Response to elevated platelet cytosolic Ca2+"
JAMg_model_14464.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_19967.1	1	MetaCyc: PWY-7379	"Mrna capping II"
JAMg_model_18078.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_11704.1	7	MetaCyc: PWY-6277;MetaCyc: PWY-6122;KEGG: 00230+2.4.2.14;MetaCyc: PWY-6121;MetaCyc: PWY-7282;KEGG: 00250+2.4.2.14;Reactome: R-HSA-73817	"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis II";"Purine metabolism";"5-aminoimidazole ribonucleotide biosynthesis I";"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"Alanine, aspartate and glutamate metabolism";"Purine ribonucleoside monophosphate biosynthesis"
JAMg_model_4901.1	1	Reactome: R-HSA-6802952	"Signaling by BRAF and RAF fusions"
JAMg_model_11950.2	15	Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884;Reactome: R-HSA-9029569;Reactome: R-HSA-8936459;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593;Reactome: R-HSA-8986944;Reactome: R-HSA-2559580;Reactome: R-HSA-9022692;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-8948700	"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity";"Transcriptional Regulation by MECP2";"Oxidative Stress Induced Senescence";"Regulation of MECP2 expression and activity";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation"
JAMg_model_13099.1	3	MetaCyc: PWY-7807;KEGG: 00190+3.6.1.1;MetaCyc: PWY-7805	"Glyphosate degradation III";"Oxidative phosphorylation";"(aminomethyl)phosphonate degradation"
JAMg_model_6101.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_12281.2	2	Reactome: R-HSA-983231;Reactome: R-HSA-5205685	"Factors involved in megakaryocyte development and platelet production";"Pink/Parkin Mediated Mitophagy"
JAMg_model_10204.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_14272.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_21298.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4008.1	4	Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813	"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids"
JAMg_model_19704.4	2	MetaCyc: PWY-6558;Reactome: R-HSA-2022928	"Heparan sulfate biosynthesis (late stages)";"HS-GAG biosynthesis"
JAMg_model_20787.6	32	Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-77075;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-167238;Reactome: R-HSA-72086;Reactome: R-HSA-73776;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-75955;Reactome: R-HSA-9018519;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203	"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"RNA Pol II CTD phosphorylation and interaction with CE";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Capping";"RNA Polymerase II Promoter Escape";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Elongation";"Estrogen-dependent gene expression";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA"
JAMg_model_1395.1	4	MetaCyc: PWY-7494;MetaCyc: PWY-3722;Reactome: R-HSA-6798163;KEGG: 00260+1.2.1.8+1.1.99.1	"Choline degradation IV";"Glycine betaine biosynthesis II (Gram-positive bacteria)";"Choline catabolism";"Glycine, serine and threonine metabolism"
JAMg_model_19117.2	1	Reactome: R-HSA-200425	"Carnitine metabolism"
JAMg_model_10821.2	3	MetaCyc: PWY-5691;KEGG: 00230+1.7.3.3;KEGG: 00232+1.7.3.3	"Urate conversion to allantoin I";"Purine metabolism";"Caffeine metabolism"
JAMg_model_14757.1	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_18337.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_974.1	2	Reactome: R-HSA-5223345;Reactome: R-HSA-425393	"Miscellaneous transport and binding events";"Transport of inorganic cations/anions and amino acids/oligopeptides"
JAMg_model_17286.1	6	Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;MetaCyc: PWY-7817	"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_16125.1	3	Reactome: R-HSA-6785470;Reactome: R-HSA-6784531;Reactome: R-HSA-8868766	"tRNA processing in the mitochondrion";"tRNA processing in the nucleus";"rRNA processing in the mitochondrion"
JAMg_model_8811.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_9881.3	5	MetaCyc: PWY-5189;Reactome: R-HSA-189451;MetaCyc: PWY-7536;KEGG: 00260+2.3.1.37;KEGG: 00860+2.3.1.37	"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis";"2-amino-3-hydroxycyclopent-2-enone biosynthesis";"Glycine, serine and threonine metabolism";"Porphyrin and chlorophyll metabolism"
JAMg_model_14749.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_13194.3	4	Reactome: R-HSA-70895;KEGG: 00640+1.2.1.27;MetaCyc: PWY-5642;KEGG: 00280+1.2.1.27	"Branched-chain amino acid catabolism";"Propanoate metabolism";"2,4-dinitrotoluene degradation";"Valine, leucine and isoleucine degradation"
JAMg_model_10409.4	3	Reactome: R-HSA-6811438;Reactome: R-HSA-8876198;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"RAB GEFs exchange GTP for GDP on RABs";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_12749.8	12	Reactome: R-HSA-2132295;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-141444	"MHC class II antigen presentation";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"HCMV Early Events";"Mitotic Prometaphase";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_14184.2	3	Reactome: R-HSA-6782315;MetaCyc: PWY-8106;MetaCyc: PWY-6700	"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis III (queuosine salvage)";"Queuosine biosynthesis I (de novo)"
JAMg_model_17449.1	5	MetaCyc: PWY-6527;KEGG: 00052+2.7.1.6;MetaCyc: PWY-3821;KEGG: 00520+2.7.1.6;MetaCyc: PWY-6317	"Stachyose degradation";"Galactose metabolism";"D-galactose detoxification";"Amino sugar and nucleotide sugar metabolism";"D-galactose degradation I (Leloir pathway)"
JAMg_model_6932.3	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_13394.4	7	Reactome: R-HSA-1483191;MetaCyc: PWY-7782;MetaCyc: PWY-3385;MetaCyc: PWY-7818;Reactome: R-HSA-1483213;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7886	"Synthesis of PC";"Plasmalogen biosynthesis";"Choline biosynthesis I";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)";"Synthesis of PE";"Glycerophospholipid metabolism";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis"
JAMg_model_7948.1	1	Reactome: R-HSA-350562	"Regulation of ornithine decarboxylase (ODC)"
JAMg_model_20856.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_12752.3	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_20490.1	14	Reactome: R-HSA-75876;MetaCyc: PWY-7035;MetaCyc: PWY-5972;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-8041;MetaCyc: PWY-5080;MetaCyc: PWY-7725;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7601;MetaCyc: PWY-7724	"Synthesis of very long-chain fatty acyl-CoAs";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Fatty acid elongation";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)"
JAMg_model_6589.1	3	KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16	"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway"
JAMg_model_5663.1	2	Reactome: R-HSA-204005;Reactome: R-HSA-8876198	"COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_17550.1	8	Reactome: R-HSA-5689880;Reactome: R-HSA-6804757;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-8866652;Reactome: R-HSA-6782210;Reactome: R-HSA-8948747;Reactome: R-HSA-6781823	"Ub-specific processing proteases";"Regulation of TP53 Degradation";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Synthesis of active ubiquitin: roles of E1 and E2 enzymes";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Regulation of PTEN localization";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_15815.1	5	Reactome: R-HSA-5689880;Reactome: R-HSA-4641257;Reactome: R-HSA-5545619;Reactome: R-HSA-201681;Reactome: R-HSA-8948751	"Ub-specific processing proteases";"Degradation of AXIN";"XAV939 inhibits tankyrase, stabilizing AXIN";"TCF dependent signaling in response to WNT";"Regulation of PTEN stability and activity"
JAMg_model_957.4	4	Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-5625970;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"RHO GTPases activate KTN1";"Kinesins"
JAMg_model_6375.5	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_16606.1	4	Reactome: R-HSA-379726;Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.6;Reactome: R-HSA-379716	"Mitochondrial tRNA aminoacylation";"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_19797.2	1	Reactome: R-HSA-376172	"DSCAM interactions"
JAMg_model_6409.1	2	Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_10598.7	2	Reactome: R-HSA-5689880;Reactome: R-HSA-5689603	"Ub-specific processing proteases";"UCH proteinases"
JAMg_model_642.1	6	MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733	"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis"
JAMg_model_16302.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_4612.1	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394	"UCH proteinases";"DNA Damage Recognition in GG-NER"
JAMg_model_4541.12	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_8698.5	22	MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7049;MetaCyc: PWY-5080;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7053;MetaCyc: PWY-6958;MetaCyc: PWY-7606;MetaCyc: PWY-7726;MetaCyc: PWY-7035;MetaCyc: PWY-5353;MetaCyc: PWY-7727;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7592;MetaCyc: PWY-7725;MetaCyc: PWY-7724;MetaCyc: PWY-7601;Reactome: R-HSA-75876;MetaCyc: PWY-8041;MetaCyc: PWY-7619;MetaCyc: PWY-7728	"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Fatty acid elongation";"Docosahexaenoate biosynthesis I (lower eukaryotes)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Juniperonate biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)"
JAMg_model_14612.1	1	Reactome: R-HSA-3000171	"Non-integrin membrane-ECM interactions"
JAMg_model_19757.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_7186.3	18	MetaCyc: PWY-6642;KEGG: 00400+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00710+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00950+2.6.1.1;KEGG: 00360+2.6.1.1;KEGG: 00220+2.6.1.1;MetaCyc: PWY-7115;MetaCyc: PWY-6638;MetaCyc: PWY-7117;KEGG: 00960+2.6.1.1;MetaCyc: PWY-6643;MetaCyc: PWY-7383;KEGG: 00250+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00270+2.6.1.1;KEGG: 00401+2.6.1.1	"(R)-cysteate degradation";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Arginine and proline metabolism";"Carbon fixation in photosynthetic organisms";"Tyrosine metabolism";"Isoquinoline alkaloid biosynthesis";"Phenylalanine metabolism";"Arginine biosynthesis";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Tropane, piperidine and pyridine alkaloid biosynthesis";"Coenzyme M biosynthesis II";"Anaerobic energy metabolism (invertebrates, cytosol)";"Alanine, aspartate and glutamate metabolism";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism";"Novobiocin biosynthesis"
JAMg_model_532.1	5	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_18425.1	17	MetaCyc: PWY-5451;KEGG: 00380+1.14.14.1;KEGG: 00071+1.14.14.1;MetaCyc: PWY-7466;KEGG: 00980+1.14.14.1;MetaCyc: PWY-6992;MetaCyc: PWY-5665;KEGG: 00591+1.14.14.1;KEGG: 00982+1.14.14.1;MetaCyc: PWY-7826;KEGG: 00830+1.14.14.1;MetaCyc: PWY-6398;Reactome: R-HSA-211981;KEGG: 00590+1.14.14.1;KEGG: 00140+1.14.14.1;KEGG: 00627+1.14.14.1;KEGG: 00232+1.14.14.1	"Acetone degradation I (to methylglyoxal)";"Tryptophan metabolism";"Fatty acid degradation";"Acetone degradation III (to propane-1,2-diol)";"Metabolism of xenobiotics by cytochrome P450";"1,5-anhydrofructose degradation";"Vanillin biosynthesis I";"Linoleic acid metabolism";"Drug metabolism - cytochrome P450";"Amaryllidacea alkaloids biosynthesis";"Retinol metabolism";"Melatonin degradation I";"Xenobiotics";"Arachidonic acid metabolism";"Steroid hormone biosynthesis";"Aminobenzoate degradation";"Caffeine metabolism"
JAMg_model_8885.1	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_1296.1	9	Reactome: R-HSA-110314;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-8951664;Reactome: R-HSA-5696400;Reactome: R-HSA-5696394;Reactome: R-HSA-5696395;Reactome: R-HSA-6781823	"Recognition of DNA damage by PCNA-containing replication complex";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Neddylation";"Dual Incision in GG-NER";"DNA Damage Recognition in GG-NER";"Formation of Incision Complex in GG-NER";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_5258.3	2	Reactome: R-HSA-72163;Reactome: R-HSA-430039	"mRNA Splicing - Major Pathway";"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_327.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_20391.8	4	MetaCyc: PWY-7221;KEGG: 00230+6.3.5.2;KEGG: 00983+6.3.5.2;Reactome: R-HSA-73817	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Drug metabolism - other enzymes";"Purine ribonucleoside monophosphate biosynthesis"
JAMg_model_2678.1	3	MetaCyc: PWY-4261;Reactome: R-HSA-75109;KEGG: 00561+2.7.1.30	"Glycerol degradation I";"Triglyceride biosynthesis";"Glycerolipid metabolism"
JAMg_model_3201.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_2609.1	1	Reactome: R-HSA-3238698	"WNT ligand biogenesis and trafficking"
JAMg_model_18902.1	3	MetaCyc: PWY-1801;Reactome: R-HSA-156590;KEGG: 00680+3.1.2.12	"Formaldehyde oxidation II (glutathione-dependent)";"Glutathione conjugation";"Methane metabolism"
JAMg_model_9369.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_829.3	3	Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_13258.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_16510.2	3	Reactome: R-HSA-72187;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_19081.3	2	KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1	"Pentose phosphate pathway";"Purine metabolism"
JAMg_model_8885.4	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_5621.1	11	KEGG: 00230+4.6.1.1;Reactome: R-HSA-170660;Reactome: R-HSA-418555;Reactome: R-HSA-164378;Reactome: R-HSA-418594;Reactome: R-HSA-418597;Reactome: R-HSA-163359;Reactome: R-HSA-432040;Reactome: R-HSA-170670;Reactome: R-HSA-5610787;Reactome: R-HSA-163615	"Purine metabolism";"Adenylate cyclase activating pathway";"G alpha (s) signalling events";"PKA activation in glucagon signalling";"G alpha (i) signalling events";"G alpha (z) signalling events";"Glucagon signaling in metabolic regulation";"Vasopressin regulates renal water homeostasis via Aquaporins";"Adenylate cyclase inhibitory pathway";"Hedgehog 'off' state";"PKA activation"
JAMg_model_14659.2	1	KEGG: 00970+6.3.5.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_1507.2	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_205.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_10656.2	3	Reactome: R-HSA-9645722;Reactome: R-HSA-140837;Reactome: R-HSA-111471	"Defective Intrinsic Pathway for Apoptosis Due to p14ARF Loss of Function";"Intrinsic Pathway of Fibrin Clot Formation";"Apoptotic factor-mediated response"
JAMg_model_2104.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_16208.1	5	Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-75105;Reactome: R-HSA-2426168;Reactome: R-HSA-9029558	"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"Fatty acyl-CoA biosynthesis";"Activation of gene expression by SREBF (SREBP)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_3715.3	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10838.1	11	Reactome: R-HSA-110314;Reactome: R-HSA-5656169;Reactome: R-HSA-174430;Reactome: R-HSA-5651801;Reactome: R-HSA-5685942;Reactome: R-HSA-6782210;Reactome: R-HSA-68952;Reactome: R-HSA-5696400;Reactome: R-HSA-6782135;Reactome: R-HSA-68962;Reactome: R-HSA-5696397	"Recognition of DNA damage by PCNA-containing replication complex";"Termination of translesion DNA synthesis";"Telomere C-strand synthesis initiation";"PCNA-Dependent Long Patch Base Excision Repair";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"DNA replication initiation";"Dual Incision in GG-NER";"Dual incision in TC-NER";"Activation of the pre-replicative complex";"Gap-filling DNA repair synthesis and ligation in GG-NER"
JAMg_model_9054.7	3	KEGG: 00330+2.3.1.57;MetaCyc: PWY-6117;MetaCyc: PWY-0	"Arginine and proline metabolism";"Spermine and spermidine degradation I";"Putrescine degradation III"
JAMg_model_7014.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_10841.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_16884.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_3725.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_3864.1	3	MetaCyc: PWY-7159;KEGG: 00860+1.3.3.4;Reactome: R-HSA-189451	"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis"
JAMg_model_13932.1	1	Reactome: R-HSA-6802952	"Signaling by BRAF and RAF fusions"
JAMg_model_16942.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_3430.4	1	Reactome: R-HSA-381038	"XBP1(S) activates chaperone genes"
JAMg_model_2499.2	2	Reactome: R-HSA-6811438;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_15253.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_3756.5	5	KEGG: 00564+2.7.8.5;Reactome: R-HSA-1483148;MetaCyc: PWY-7817;MetaCyc: PWY-5269;MetaCyc: PWY-5668	"Glycerophospholipid metabolism";"Synthesis of PG";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Cardiolipin biosynthesis II";"Cardiolipin biosynthesis I"
JAMg_model_8491.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_7222.4	16	Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-9010553;Reactome: R-HSA-167238;Reactome: R-HSA-167152;Reactome: R-HSA-8951664;Reactome: R-HSA-674695;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-167200;Reactome: R-HSA-983168;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-6796648;Reactome: R-HSA-112382;Reactome: R-HSA-167287	"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Regulation of expression of SLITs and ROBOs";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"Neddylation";"RNA Polymerase II Pre-transcription Events";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Antigen processing: Ubiquitination & Proteasome degradation";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery"
JAMg_model_9396.1	2	Reactome: R-HSA-416993;Reactome: R-HSA-202733	"Trafficking of GluR2-containing AMPA receptors";"Cell surface interactions at the vascular wall"
JAMg_model_4637.1	3	KEGG: 00230+4.6.1.2;Reactome: R-HSA-392154;Reactome: R-HSA-445355	"Purine metabolism";"Nitric oxide stimulates guanylate cyclase";"Smooth Muscle Contraction"
JAMg_model_8361.3	1	Reactome: R-HSA-5223345	"Miscellaneous transport and binding events"
JAMg_model_9089.1	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_16589.5	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_10507.1	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_288.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_7496.6	4	Reactome: R-HSA-2586552;Reactome: R-HSA-983231;Reactome: R-HSA-1170546;Reactome: R-HSA-982772	"Signaling by Leptin";"Factors involved in megakaryocyte development and platelet production";"Prolactin receptor signaling";"Growth hormone receptor signaling"
JAMg_model_16230.1	16	Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339	"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_1645.2	6	KEGG: 00531+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23	"Glycosaminoglycan degradation";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Xyloglucan degradation II (exoglucanase)";"Other glycan degradation";"Galactose metabolism"
JAMg_model_18624.1	13	Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs"
JAMg_model_4974.1	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_19028.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_20300.1	8	Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-5689880;Reactome: R-HSA-5620912;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-2565942	"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Ub-specific processing proteases";"Anchoring of the basal body to the plasma membrane";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_19408.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_10129.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_19016.1	4	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16;Reactome: R-HSA-6807505	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation";"RNA polymerase II transcribes snRNA genes"
JAMg_model_1554.1	8	Reactome: R-HSA-6803207;Reactome: R-HSA-6798695;Reactome: R-HSA-111464;Reactome: R-HSA-111458;Reactome: R-HSA-111463;Reactome: R-HSA-9627069;Reactome: R-HSA-8953750;Reactome: R-HSA-111459	"TP53 Regulates Transcription of Caspase Activators and Caspases";"Neutrophil degranulation";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"Formation of apoptosome";"SMAC (DIABLO) binds to IAPs";"Regulation of the apoptosome activity";"Transcriptional Regulation by E2F6";"Activation of caspases through apoptosome-mediated cleavage"
JAMg_model_447.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_13245.1	7	Reactome: R-HSA-5628897;KEGG: 00250+3.5.1.2;Reactome: R-HSA-8964539;MetaCyc: PWY-5921;Reactome: R-HSA-210500;KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2	"TP53 Regulates Metabolic Genes";"Alanine, aspartate and glutamate metabolism";"Glutamate and glutamine metabolism";"Glutaminyl-trnagln biosynthesis via transamidation";"Glutamate Neurotransmitter Release Cycle";"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism"
JAMg_model_16418.1	4	Reactome: R-HSA-428540;Reactome: R-HSA-373753;Reactome: R-HSA-4420097;Reactome: R-HSA-186763	"Activation of RAC1";"Nephrin family interactions";"VEGFA-VEGFR2 Pathway";"Downstream signal transduction"
JAMg_model_7864.2	3	Reactome: R-HSA-6811434;Reactome: R-HSA-983189;Reactome: R-HSA-390471	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_15298.1	4	Reactome: R-HSA-8874081;Reactome: R-HSA-3000171;Reactome: R-HSA-3000178;Reactome: R-HSA-3000157	"MET activates PTK2 signaling";"Non-integrin membrane-ECM interactions";"ECM proteoglycans";"Laminin interactions"
JAMg_model_9084.2	2	Reactome: R-HSA-6807505;Reactome: R-HSA-72163	"RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway"
JAMg_model_20864.4	12	KEGG: 00010+6.2.1.1;MetaCyc: PWY-7857;MetaCyc: PWY-5133;MetaCyc: PWY-5132;MetaCyc: PWY-6672;KEGG: 00680+6.2.1.1;KEGG: 00720+6.2.1.1;KEGG: 00620+6.2.1.1;MetaCyc: PWY-7118;MetaCyc: PWY-5108;KEGG: 00630+6.2.1.1;KEGG: 00640+6.2.1.1	"Glycolysis / Gluconeogenesis";"Adlupulone and adhumulone biosynthesis";"Colupulone and cohumulone biosynthesis";"Lupulone and humulone biosynthesis";"Cis-genanyl-coa degradation";"Methane metabolism";"Carbon fixation pathways in prokaryotes";"Pyruvate metabolism";"Chitin degradation to ethanol";"L-isoleucine biosynthesis V";"Glyoxylate and dicarboxylate metabolism";"Propanoate metabolism"
JAMg_model_8308.1	2	Reactome: R-HSA-180024;KEGG: 00230+3.1.4.53	"DARPP-32 events";"Purine metabolism"
JAMg_model_15391.1	2	Reactome: R-HSA-418594;Reactome: R-HSA-6814122	"G alpha (i) signalling events";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_21058.1	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_14488.1	8	KEGG: 00500+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00520+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00052+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00051+2.7.1.1	"Starch and sucrose metabolism";"Streptomycin biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Glycolysis";"Galactose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Fructose and mannose metabolism"
JAMg_model_12415.2	1	Reactome: R-HSA-532668	"N-glycan trimming in the ER and Calnexin/Calreticulin cycle"
JAMg_model_12459.1	16	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012	"Peptide chain elongation";"Viral mRNA Translation";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_13715.3	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_16087.1	2	KEGG: 00380+1.13.11.11;Reactome: R-HSA-71240	"Tryptophan metabolism";"Tryptophan catabolism"
JAMg_model_3576.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_18910.5	1	Reactome: R-HSA-2142789	"Ubiquinol biosynthesis"
JAMg_model_9665.1	2	MetaCyc: PWY-5041;KEGG: 00270+3.3.1.1	"S-adenosyl-L-methionine cycle II";"Cysteine and methionine metabolism"
JAMg_model_2884.1	2	Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_12860.1	4	Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219;KEGG: 00230+2.7.4.3	"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_291.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_14654.2	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_2627.2	2	MetaCyc: PWY-6111;KEGG: 00071+2.3.1.21	"Mitochondrial L-carnitine shuttle";"Fatty acid degradation"
JAMg_model_2053.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_6550.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_5262.2	2	KEGG: 00970+6.1.1.1;Reactome: R-HSA-379716	"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_18567.1	7	KEGG: 00051+5.4.2.8;MetaCyc: PWY-5659;MetaCyc: PWY-7456;MetaCyc: PWY-7586;KEGG: 00520+5.4.2.8;MetaCyc: PWY-882;Reactome: R-HSA-446205	"Fructose and mannose metabolism";"GDP-mannose biosynthesis";"Beta-(1,4)-mannan degradation";"Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation";"Amino sugar and nucleotide sugar metabolism";"L-ascorbate biosynthesis I (L-galactose pathway)";"Synthesis of GDP-mannose"
JAMg_model_7998.1	2	Reactome: R-HSA-418457;Reactome: R-HSA-1296052	"cGMP effects";"Ca2+ activated K+ channels"
JAMg_model_21292.1	17	MetaCyc: PWY-5690;MetaCyc: PWY-1622;KEGG: 00710+1.1.1.37;MetaCyc: PWY-561;KEGG: 00020+1.1.1.37;MetaCyc: PWY-7383;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00270+1.1.1.37;KEGG: 00720+1.1.1.37;KEGG: 00680+1.1.1.37;KEGG: 00620+1.1.1.37;MetaCyc: PWY-6728;KEGG: 00630+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-5392;MetaCyc: PWY-7115	"TCA cycle II (plants and fungi)";"Formaldehyde assimilation I (serine pathway)";"Carbon fixation in photosynthetic organisms";"Superpathway of glyoxylate cycle and fatty acid degradation";"Citrate cycle (TCA cycle)";"Anaerobic energy metabolism (invertebrates, cytosol)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism";"Carbon fixation pathways in prokaryotes";"Methane metabolism";"Pyruvate metabolism";"Methylaspartate cycle";"Glyoxylate and dicarboxylate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Reductive TCA cycle II";"C4 photosynthetic carbon assimilation cycle, NAD-ME type"
JAMg_model_15974.1	10	MetaCyc: PWY-7003;KEGG: 00710+2.7.2.3;Reactome: R-HSA-70171;Reactome: R-HSA-70263;MetaCyc: PWY-8004;MetaCyc: PWY-6886;KEGG: 00010+2.7.2.3;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-6901	"Glycerol degradation to butanol";"Carbon fixation in photosynthetic organisms";"Glycolysis";"Gluconeogenesis";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation"
JAMg_model_11352.2	2	KEGG: 00670+2.1.2.10;KEGG: 00260+2.1.2.10	"One carbon pool by folate";"Glycine, serine and threonine metabolism"
JAMg_model_5106.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_11430.1	4	Reactome: R-HSA-3656532;Reactome: R-HSA-2173789;Reactome: R-HSA-2173788;Reactome: R-HSA-3304356	"TGFBR1 KD Mutants in Cancer";"TGF-beta receptor signaling activates SMADs";"Downregulation of TGF-beta receptor signaling";"SMAD2/3 Phosphorylation Motif Mutants in Cancer"
JAMg_model_14518.3	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_19896.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_20738.3	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_17252.2	3	Reactome: R-HSA-8874081;Reactome: R-HSA-3000171;Reactome: R-HSA-3000157	"MET activates PTK2 signaling";"Non-integrin membrane-ECM interactions";"Laminin interactions"
JAMg_model_13855.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_20787.2	32	Reactome: R-HSA-73776;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-75955;Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-76042;Reactome: R-HSA-6803529;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-77075;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-167238;Reactome: R-HSA-72086	"RNA Polymerase II Promoter Escape";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Elongation";"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"RNA Pol II CTD phosphorylation and interaction with CE";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Capping"
JAMg_model_10727.1	1	MetaCyc: PWY-7437	"Protein O-[N-acetyl]-glucosylation"
JAMg_model_14755.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_9993.2	3	Reactome: R-HSA-112382;Reactome: R-HSA-75955;Reactome: R-HSA-674695	"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_306.1	11	Reactome: R-HSA-2565942;Reactome: R-HSA-3371497;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-8854518;Reactome: R-HSA-6807878;Reactome: R-HSA-5620912;Reactome: R-HSA-6811436;Reactome: R-HSA-380259;Reactome: R-HSA-2132295;Reactome: R-HSA-380320	"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"AURKA Activation by TPX2";"COPI-mediated anterograde transport";"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic";"Loss of Nlp from mitotic centrosomes";"MHC class II antigen presentation";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_116.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_5403.2	13	Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_18928.1	4	Reactome: R-HSA-176187;Reactome: R-HSA-68962;Reactome: R-HSA-176974;Reactome: R-HSA-69205	"Activation of ATR in response to replication stress";"Activation of the pre-replicative complex";"Unwinding of DNA";"G1/S-Specific Transcription"
JAMg_model_788.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_20391.6	4	KEGG: 00983+6.3.5.2;Reactome: R-HSA-73817;KEGG: 00230+6.3.5.2;MetaCyc: PWY-7221	"Drug metabolism - other enzymes";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis"
JAMg_model_1494.1	4	Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_7655.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_6042.6	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_6481.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_651.1	3	Reactome: R-HSA-379716;KEGG: 00970+6.1.1.5;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Selenoamino acid metabolism"
JAMg_model_8096.4	5	Reactome: R-HSA-73856;Reactome: R-HSA-77595;Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-168315	"RNA Polymerase II Transcription Termination";"Processing of Intronless Pre-mRNAs";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"Inhibition of Host mRNA Processing and RNA Silencing"
JAMg_model_9164.1	4	MetaCyc: PWY-6281;KEGG: 00970+6.1.1.11;Reactome: R-HSA-379716;Reactome: R-HSA-2408557	"L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation";"Selenocysteine synthesis"
JAMg_model_14120.3	11	Reactome: R-HSA-4420097;KEGG: 05170+2.7.11.1;Reactome: R-HSA-171007;KEGG: 05163+2.7.11.1;Reactome: R-HSA-2559580;Reactome: R-HSA-450302;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1	"VEGFA-VEGFR2 Pathway";"Human immunodeficiency virus 1 infection";"p38MAPK events";"Human cytomegalovirus infection";"Oxidative Stress Induced Senescence";"activated TAK1 mediates p38 MAPK activation";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"mTOR signaling pathway";"PI3K-Akt signaling pathway"
JAMg_model_2590.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_6938.3	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_20509.2	2	Reactome: R-HSA-168276;Reactome: R-HSA-1169408	"NS1 Mediated Effects on Host Pathways";"ISG15 antiviral mechanism"
JAMg_model_521.1	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_11904.7	2	KEGG: 00620+3.1.2.6;MetaCyc: PWY-5386	"Pyruvate metabolism";"Methylglyoxal degradation I"
JAMg_model_8986.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_10021.5	4	KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;KEGG: 00053+1.13.99.1;Reactome: R-HSA-1855183	"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Ascorbate and aldarate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol"
JAMg_model_16966.3	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_3039.2	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_18158.2	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_10246.3	13	MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00603+3.2.1.52;KEGG: 00604+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52;Reactome: R-HSA-1660662;KEGG: 00513+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-2022857;Reactome: R-HSA-2024101	"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Glycosphingolipid biosynthesis - ganglio series";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation";"Glycosphingolipid metabolism";"Various types of N-glycan biosynthesis";"Anhydromuropeptides recycling II";"Keratan sulfate degradation";"CS/DS degradation"
JAMg_model_11712.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4353.1	15	Reactome: R-HSA-167242;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-9603505;Reactome: R-HSA-167243;Reactome: R-HSA-167238;Reactome: R-HSA-167290;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167246;Reactome: R-HSA-75955;Reactome: R-HSA-674695	"Abortive elongation of HIV-1 transcript in the absence of Tat";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"NTRK3 as a dependence receptor";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of Tat-mediated HIV elongation";"Pausing and recovery of HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_18656.1	15	Reactome: R-HSA-5693568;Reactome: R-HSA-5685939;Reactome: R-HSA-5693565;Reactome: R-HSA-5693571;Reactome: R-HSA-2559586;Reactome: R-HSA-6804756;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-5693548;Reactome: R-HSA-912446;Reactome: R-HSA-5693616;Reactome: R-HSA-69473	"Resolution of D-loop Structures through Holliday Junction Intermediates";"HDR through MMEJ (alt-NHEJ)";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Nonhomologous End-Joining (NHEJ)";"DNA Damage/Telomere Stress Induced Senescence";"Regulation of TP53 Activity through Phosphorylation";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"Sensing of DNA Double Strand Breaks";"Meiotic recombination";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint"
JAMg_model_15139.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_9488.1	1	Reactome: R-HSA-204626	"Hypusine synthesis from eIF5A-lysine"
JAMg_model_1192.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_13400.4	10	Reactome: R-HSA-5684264;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-2565942;Reactome: R-HSA-202424;Reactome: R-HSA-8951664;Reactome: R-HSA-2871837;Reactome: R-HSA-5676590;Reactome: R-HSA-5607764;Reactome: R-HSA-1169091	"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of PLK1 Activity at G2/M Transition";"Downstream TCR signaling";"Neddylation";"FCERI mediated NF-kB activation";"NIK-->noncanonical NF-kB signaling";"CLEC7A (Dectin-1) signaling";"Activation of NF-kappaB in B cells"
JAMg_model_6935.2	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_5757.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_9054.1	3	MetaCyc: PWY-0;MetaCyc: PWY-6117;KEGG: 00330+2.3.1.57	"Putrescine degradation III";"Spermine and spermidine degradation I";"Arginine and proline metabolism"
JAMg_model_12174.2	1	KEGG: 00970+6.1.1.9	"Aminoacyl-tRNA biosynthesis"
JAMg_model_3454.2	3	MetaCyc: PWY-6619;Reactome: R-HSA-74217;KEGG: 00230+2.7.1.20	"Adenine and adenosine salvage VI";"Purine salvage";"Purine metabolism"
JAMg_model_18381.1	7	KEGG: 04070+3.1.4.11;MetaCyc: PWY-7039;MetaCyc: PWY-6351;MetaCyc: PWY-8052;KEGG: 00562+3.1.4.11;Reactome: R-HSA-1855204;MetaCyc: PWY-6367	"Phosphatidylinositol signaling system";"Phosphatidate metabolism, as a signaling molecule";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"Inositol phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism"
JAMg_model_7190.1	12	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;Reactome: R-HSA-194840;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Relaxin signaling pathway";"G alpha (q) signalling events";"NRAGE signals death through JNK";"Rho GTPase cycle";"Thermogenesis";"Human papillomavirus infection";"Human cytomegalovirus infection";"DCC mediated attractive signaling";"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events"
JAMg_model_173.1	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_11140.2	16	Reactome: R-HSA-176412;Reactome: R-HSA-69017;Reactome: R-HSA-141430;Reactome: R-HSA-2559582;Reactome: R-HSA-174184;Reactome: R-HSA-176409;Reactome: R-HSA-174048;Reactome: R-HSA-176407;Reactome: R-HSA-174084;Reactome: R-HSA-2467813;Reactome: R-HSA-176408;Reactome: R-HSA-174178;Reactome: R-HSA-8853884;Reactome: R-HSA-174154;Reactome: R-HSA-983168;Reactome: R-HSA-179409	"Phosphorylation of the APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of mitotic proteins";"APC/C:Cdc20 mediated degradation of Cyclin B";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Autodegradation of Cdh1 by Cdh1:APC/C";"Separation of Sister Chromatids";"Regulation of APC/C activators between G1/S and early anaphase";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Transcriptional Regulation by VENTX";"APC/C:Cdc20 mediated degradation of Securin";"Antigen processing: Ubiquitination & Proteasome degradation";"APC-Cdc20 mediated degradation of Nek2A"
JAMg_model_4274.1	1	Reactome: R-HSA-6783984	"Glycine degradation"
JAMg_model_9228.3	16	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956	"Peptide chain elongation";"Viral mRNA Translation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_2074.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-5357905	"RAB GEFs exchange GTP for GDP on RABs";"Regulation of TNFR1 signaling"
JAMg_model_5030.6	2	Reactome: R-HSA-390471;Reactome: R-HSA-1660662	"Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism"
JAMg_model_2571.1	1	Reactome: R-HSA-418594	"G alpha (i) signalling events"
JAMg_model_829.4	3	Reactome: R-HSA-159236;Reactome: R-HSA-73856;Reactome: R-HSA-72187	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing"
JAMg_model_2842.4	17	Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-983168;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72695;Reactome: R-HSA-72706	"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"Antigen processing: Ubiquitination & Proteasome degradation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_11816.2	1	Reactome: R-HSA-70635	"Urea cycle"
JAMg_model_12247.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_268.2	2	Reactome: R-HSA-975577;Reactome: R-HSA-2022854	"N-Glycan antennae elongation";"Keratan sulfate biosynthesis"
JAMg_model_8435.5	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_14338.1	5	KEGG: 00531+3.1.6.14;Reactome: R-HSA-432720;Reactome: R-HSA-6798695;Reactome: R-HSA-2206305;Reactome: R-HSA-2022857	"Glycosaminoglycan degradation";"Lysosome Vesicle Biogenesis";"Neutrophil degranulation";"MPS IIID - Sanfilippo syndrome D";"Keratan sulfate degradation"
JAMg_model_14362.1	8	Reactome: R-HSA-191273;MetaCyc: PWY-6174;Reactome: R-HSA-2426168;MetaCyc: PWY-7391;MetaCyc: PWY-7524;KEGG: 00900+1.1.1.34;Reactome: R-HSA-1989781;MetaCyc: PWY-922	"Cholesterol biosynthesis";"Mevalonate pathway II (archaea)";"Activation of gene expression by SREBF (SREBP)";"Isoprene biosynthesis II (engineered)";"Mevalonate pathway III (archaea)";"Terpenoid backbone biosynthesis";"PPARA activates gene expression";"Mevalonate pathway I"
JAMg_model_21043.1	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_14645.1	2	Reactome: R-HSA-9603798;Reactome: R-HSA-1369062	"Class I peroxisomal membrane protein import";"ABC transporters in lipid homeostasis"
JAMg_model_21186.1	4	KEGG: 00520+3.2.1.14;MetaCyc: PWY-6855;MetaCyc: PWY-6902;MetaCyc: PWY-7822	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)"
JAMg_model_5024.2	1	Reactome: R-HSA-1614635	"Sulfur amino acid metabolism"
JAMg_model_19535.1	14	Reactome: R-HSA-75876;MetaCyc: PWY-7035;MetaCyc: PWY-5972;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-8041;MetaCyc: PWY-5080;MetaCyc: PWY-7725;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7601;MetaCyc: PWY-7724	"Synthesis of very long-chain fatty acyl-CoAs";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Fatty acid elongation";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)"
JAMg_model_11816.1	1	Reactome: R-HSA-70635	"Urea cycle"
JAMg_model_13363.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_11740.5	9	Reactome: R-HSA-174411;Reactome: R-HSA-6784531;Reactome: R-HSA-174430;Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-68952;Reactome: R-HSA-113501;Reactome: R-HSA-69183;Reactome: R-HSA-68962	"Polymerase switching on the C-strand of the telomere";"tRNA processing in the nucleus";"Telomere C-strand synthesis initiation";"Removal of the Flap Intermediate";"Polymerase switching";"DNA replication initiation";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Processive synthesis on the lagging strand";"Activation of the pre-replicative complex"
JAMg_model_5358.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_17940.1	3	Reactome: R-HSA-5423646;MetaCyc: PWY-7533;Reactome: R-HSA-2142691	"Aflatoxin activation and detoxification";"Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_16863.1	3	Reactome: R-HSA-6807505;Reactome: R-HSA-76071;Reactome: R-HSA-749476	"RNA polymerase II transcribes snRNA genes";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_5776.4	3	Reactome: R-HSA-2408508;Reactome: R-HSA-1614558;Reactome: R-HSA-1614603	"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Degradation of cysteine and homocysteine";"Cysteine formation from homocysteine"
JAMg_model_20391.4	4	MetaCyc: PWY-7221;KEGG: 00230+6.3.5.2;KEGG: 00983+6.3.5.2;Reactome: R-HSA-73817	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Drug metabolism - other enzymes";"Purine ribonucleoside monophosphate biosynthesis"
JAMg_model_19110.1	2	Reactome: R-HSA-2142691;Reactome: R-HSA-2142700	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Synthesis of Lipoxins (LX)"
JAMg_model_4720.1	3	Reactome: R-HSA-110357;Reactome: R-HSA-110329;Reactome: R-HSA-110328	"Displacement of DNA glycosylase by APEX1";"Cleavage of the damaged pyrimidine";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine"
JAMg_model_8635.1	3	MetaCyc: PWY-3961;KEGG: 00770+2.7.1.33;Reactome: R-HSA-196783	"Phosphopantothenate biosynthesis II";"Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis"
JAMg_model_11953.2	15	Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-8853884;Reactome: R-HSA-2559585;Reactome: R-HSA-8934593;Reactome: R-HSA-1912408;Reactome: R-HSA-4086398;Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-8986944	"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence";"Regulation of RUNX1 Expression and Activity";"Pre-NOTCH Transcription and Translation";"Ca2+ pathway";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by MECP2"
JAMg_model_12471.1	6	Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72649	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Translation initiation complex formation"
JAMg_model_10754.2	3	Reactome: R-HSA-4420097;Reactome: R-HSA-391160;KEGG: 04660+2.7.10.2	"VEGFA-VEGFR2 Pathway";"Signal regulatory protein family interactions";"T cell receptor signaling pathway"
JAMg_model_9948.4	3	Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-4420097	"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"VEGFA-VEGFR2 Pathway"
JAMg_model_8762.1	7	Reactome: R-HSA-4641262;Reactome: R-HSA-5368598;Reactome: R-HSA-201681;Reactome: R-HSA-5663220;Reactome: R-HSA-4086400;Reactome: R-HSA-4641258;Reactome: R-HSA-201688	"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"Negative regulation of TCF-dependent signaling by DVL-interacting proteins";"TCF dependent signaling in response to WNT";"RHO GTPases Activate Formins";"PCP/CE pathway";"Degradation of DVL";"WNT mediated activation of DVL"
JAMg_model_1040.7	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_9987.2	4	Reactome: R-HSA-2467813;Reactome: R-HSA-2468052;Reactome: R-HSA-2470946;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"Establishment of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin";"Resolution of Sister Chromatid Cohesion"
JAMg_model_14933.1	3	MetaCyc: PWY-7511;Reactome: R-HSA-1358803;Reactome: R-HSA-983168	"Protein ubiquitination";"Downregulation of ERBB2:ERBB3 signaling";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_20594.2	10	Reactome: R-HSA-427413;Reactome: R-HSA-9022538;Reactome: R-HSA-983231;Reactome: R-HSA-9022699;Reactome: R-HSA-9022702;Reactome: R-HSA-8936459;Reactome: R-HSA-9615017;Reactome: R-HSA-400206;Reactome: R-HSA-3899300;Reactome: R-HSA-9022692	"NoRC negatively regulates rRNA expression";"Loss of MECP2 binding ability to 5mC-DNA";"Factors involved in megakaryocyte development and platelet production";"MECP2 regulates neuronal receptors and channels";"MECP2 regulates transcription of neuronal ligands";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Regulation of lipid metabolism by PPARalpha";"SUMOylation of transcription cofactors";"Regulation of MECP2 expression and activity"
JAMg_model_829.2	3	Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_6246.1	1	Reactome: R-HSA-2514853	"Condensation of Prometaphase Chromosomes"
JAMg_model_4371.4	5	Reactome: R-HSA-5693571;Reactome: R-HSA-1834949;Reactome: R-HSA-164843;Reactome: R-HSA-3270619;Reactome: R-HSA-6798695	"Nonhomologous End-Joining (NHEJ)";"Cytosolic sensors of pathogen-associated DNA";"2-LTR circle formation";"IRF3-mediated induction of type I IFN";"Neutrophil degranulation"
JAMg_model_19655.1	3	KEGG: 00860+2.5.1.141;MetaCyc: PWY-7856;Reactome: R-HSA-189451	"Porphyrin and chlorophyll metabolism";"Heme a biosynthesis";"Heme biosynthesis"
JAMg_model_19147.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_5262.1	2	KEGG: 00970+6.1.1.1;Reactome: R-HSA-379716	"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_8159.3	12	KEGG: 00710+4.1.2.13;KEGG: 00680+4.1.2.13;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263;MetaCyc: PWY-7385;KEGG: 00051+4.1.2.13;KEGG: 00030+4.1.2.13;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-6142;MetaCyc: PWY-1861;Reactome: R-HSA-70171	"Carbon fixation in photosynthetic organisms";"Methane metabolism";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"1,3-propanediol biosynthesis (engineered)";"Fructose and mannose metabolism";"Pentose phosphate pathway";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Glycolysis"
JAMg_model_21232.1	3	Reactome: R-HSA-5250924;Reactome: R-HSA-72165;Reactome: R-HSA-72163	"B-WICH complex positively regulates rRNA expression";"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway"
JAMg_model_14541.1	4	Reactome: R-HSA-432720;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-6811440	"Lysosome Vesicle Biogenesis";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_3958.1	2	Reactome: R-HSA-6783310;Reactome: R-HSA-5693568	"Fanconi Anemia Pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_15268.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_8159.7	12	Reactome: R-HSA-70171;MetaCyc: PWY-1861;MetaCyc: PWY-6142;MetaCyc: PWY-5484;MetaCyc: PWY-1042;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385;KEGG: 00030+4.1.2.13;KEGG: 00710+4.1.2.13;KEGG: 00680+4.1.2.13;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263	"Glycolysis";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Pentose phosphate pathway";"Carbon fixation in photosynthetic organisms";"Methane metabolism";"Glycolysis / Gluconeogenesis";"Gluconeogenesis"
JAMg_model_5658.1	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_10020.1	4	KEGG: 00053+1.13.99.1;KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;Reactome: R-HSA-1855183	"Ascorbate and aldarate metabolism";"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Synthesis of IP2, IP, and Ins in the cytosol"
JAMg_model_6341.1	7	KEGG: 05163+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1	"Human cytomegalovirus infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"Human papillomavirus infection";"Thermogenesis"
JAMg_model_20973.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_5924.5	3	Reactome: R-HSA-8951664;MetaCyc: PWY-7511;Reactome: R-HSA-349425	"Neddylation";"Protein ubiquitination";"Autodegradation of the E3 ubiquitin ligase COP1"
JAMg_model_17486.1	2	Reactome: R-HSA-1362409;Reactome: R-HSA-1268020	"Mitochondrial iron-sulfur cluster biogenesis";"Mitochondrial protein import"
JAMg_model_1427.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_647.1	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_5941.1	1	Reactome: R-HSA-390648	"Muscarinic acetylcholine receptors"
JAMg_model_14770.1	9	MetaCyc: PWY-241;MetaCyc: PWY-5744;KEGG: 00910+4.2.1.1;MetaCyc: PWY-6142;MetaCyc: PWY-5743;MetaCyc: PWY-7117;Reactome: R-HSA-1475029;MetaCyc: PWY-5789;MetaCyc: PWY-7115	"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"Glyoxylate assimilation";"Nitrogen metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"3-hydroxypropanoate cycle";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Reversible hydration of carbon dioxide";"3-hydroxypropanoate/4-hydroxybutanate cycle";"C4 photosynthetic carbon assimilation cycle, NAD-ME type"
JAMg_model_19438.2	2	Reactome: R-HSA-425397;Reactome: R-HSA-5619061	"Transport of vitamins, nucleosides, and related molecules";"Defective SLC33A1 causes spastic paraplegia 42 (SPG42)"
JAMg_model_17739.1	13	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_10428.1	5	MetaCyc: PWY-5084;KEGG: 00310+1.2.4.2;KEGG: 00380+1.2.4.2;KEGG: 00020+1.2.4.2;Reactome: R-HSA-389661	"2-oxoglutarate decarboxylation to succinyl-CoA";"Lysine degradation";"Tryptophan metabolism";"Citrate cycle (TCA cycle)";"Glyoxylate metabolism and glycine degradation"
JAMg_model_1293.4	6	MetaCyc: PWY-1622;MetaCyc: PWY-8004;KEGG: 00680+5.4.2.11;KEGG: 00260+5.4.2.11;KEGG: 00010+5.4.2.11;MetaCyc: PWY-5484	"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I";"Methane metabolism";"Glycine, serine and threonine metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)"
JAMg_model_2717.1	2	KEGG: 00760+6.3.1.5;Reactome: R-HSA-196807	"Nicotinate and nicotinamide metabolism";"Nicotinate metabolism"
JAMg_model_19617.1	3	KEGG: 00790+3.1.3.1;KEGG: 00730+3.1.3.1;MetaCyc: PWY-5491	"Folate biosynthesis";"Thiamine metabolism";"Diethylphosphate degradation"
JAMg_model_10881.4	4	Reactome: R-HSA-8934903;Reactome: R-HSA-1632852;Reactome: R-HSA-5205685;Reactome: R-HSA-936440	"Receptor Mediated Mitophagy";"Macroautophagy";"Pink/Parkin Mediated Mitophagy";"Negative regulators of DDX58/IFIH1 signaling"
JAMg_model_19864.2	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_1558.1	1	Reactome: R-HSA-429958	"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_16428.3	4	MetaCyc: PWY-6803;KEGG: 00564+3.1.1.32;MetaCyc: PWY-8051;KEGG: 00592+3.1.1.32	"Phosphatidylcholine acyl editing";"Glycerophospholipid metabolism";"Anandamide biosynthesis I";"alpha-Linolenic acid metabolism"
JAMg_model_15253.2	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_18337.3	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_19030.1	5	Reactome: R-HSA-389661;KEGG: 00250+1.2.1.88;KEGG: 00330+1.2.1.88;Reactome: R-HSA-70688;MetaCyc: PWY-6853	"Glyoxylate metabolism and glycine degradation";"Alanine, aspartate and glutamate metabolism";"Arginine and proline metabolism";"Proline catabolism";"Ethylene biosynthesis II (microbes)"
JAMg_model_16528.1	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_19167.3	11	KEGG: 00565+3.1.3.4;MetaCyc: PWY-8051;Reactome: R-HSA-2029485;KEGG: 00561+3.1.3.4;MetaCyc: PWY-7782;MetaCyc: PWY-8053;KEGG: 00600+3.1.3.4;MetaCyc: PWY-8052;KEGG: 00564+3.1.3.4;MetaCyc: PWY-6453;MetaCyc: PWY-8055	"Ether lipid metabolism";"Anandamide biosynthesis I";"Role of phospholipids in phagocytosis";"Glycerolipid metabolism";"Plasmalogen biosynthesis";"Anandamide biosynthesis II";"Sphingolipid metabolism";"2-arachidonoylglycerol biosynthesis";"Glycerophospholipid metabolism";"Stigma estolide biosynthesis";"Palmitoyl ethanolamide biosynthesis"
JAMg_model_10407.3	3	Reactome: R-HSA-6811440;Reactome: R-HSA-8876198;Reactome: R-HSA-6811438	"Retrograde transport at the Trans-Golgi-Network";"RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic"
JAMg_model_19822.2	19	MetaCyc: PWY-6728;KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-7115;MetaCyc: PWY-5392;MetaCyc: PWY-8086;KEGG: 00630+1.1.1.37;MetaCyc: PWY-561;KEGG: 00020+1.1.1.37;MetaCyc: PWY-7383;Reactome: R-HSA-70263;KEGG: 00710+1.1.1.37;MetaCyc: PWY-1622;MetaCyc: PWY-5690;Reactome: R-HSA-71403;MetaCyc: PWY-5913;MetaCyc: PWY-6969;KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37	"Methylaspartate cycle";"Pyruvate metabolism";"Methane metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Reductive TCA cycle II";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Glyoxylate and dicarboxylate metabolism";"Superpathway of glyoxylate cycle and fatty acid degradation";"Citrate cycle (TCA cycle)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation I (serine pathway)";"TCA cycle II (plants and fungi)";"Citric acid cycle (TCA cycle)";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism"
JAMg_model_11904.1	2	KEGG: 00620+3.1.2.6;MetaCyc: PWY-5386	"Pyruvate metabolism";"Methylglyoxal degradation I"
JAMg_model_7222.3	16	Reactome: R-HSA-167290;Reactome: R-HSA-6796648;Reactome: R-HSA-167243;Reactome: R-HSA-167200;Reactome: R-HSA-983168;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-674695;Reactome: R-HSA-8951664;Reactome: R-HSA-167238;Reactome: R-HSA-9010553;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-167246	"Pausing and recovery of HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Tat-mediated HIV elongation arrest and recovery";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Antigen processing: Ubiquitination & Proteasome degradation";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"RNA Polymerase II Pre-transcription Events";"Neddylation";"Pausing and recovery of Tat-mediated HIV elongation";"Regulation of expression of SLITs and ROBOs";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript"
JAMg_model_5317.3	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_6026.3	3	Reactome: R-HSA-202427;Reactome: R-HSA-6798695;Reactome: R-HSA-6807004	"Phosphorylation of CD3 and TCR zeta chains";"Neutrophil degranulation";"Negative regulation of MET activity"
JAMg_model_5284.2	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_16572.1	2	Reactome: R-HSA-6783310;Reactome: R-HSA-6796648	"Fanconi Anemia Pathway";"TP53 Regulates Transcription of DNA Repair Genes"
JAMg_model_15838.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_3191.1	2	KEGG: 00520+5.4.2.10;MetaCyc: PWY-6749	"Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I"
JAMg_model_16815.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_8025.1	10	Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-912446;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554;Reactome: R-HSA-6804756;Reactome: R-HSA-5693607;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568	"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Meiotic recombination";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_5084.1	2	KEGG: 00260+2.1.2.10;KEGG: 00670+2.1.2.10	"Glycine, serine and threonine metabolism";"One carbon pool by folate"
JAMg_model_1571.2	3	Reactome: R-HSA-983168;Reactome: R-HSA-8951664;Reactome: R-HSA-390471	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_365.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_13183.1	14	KEGG: 00511+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00603+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00604+3.2.1.52;KEGG: 00531+3.2.1.52;MetaCyc: PWY-7822;MetaCyc: PWY-6902;Reactome: R-HSA-2024101;Reactome: R-HSA-2022857;Reactome: R-HSA-194840;Reactome: R-HSA-1660662;KEGG: 00513+3.2.1.52;MetaCyc: PWY-7883	"Other glycan degradation";"Amino sugar and nucleotide sugar metabolism";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - ganglio series";"Glycosaminoglycan degradation";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"CS/DS degradation";"Keratan sulfate degradation";"Rho GTPase cycle";"Glycosphingolipid metabolism";"Various types of N-glycan biosynthesis";"Anhydromuropeptides recycling II"
JAMg_model_16029.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_5091.2	16	MetaCyc: PWY-6142;KEGG: 00010+4.2.1.11;MetaCyc: PWY-1042;MetaCyc: PWY-6901;MetaCyc: PWY-7124;MetaCyc: PWY-7218;MetaCyc: PWY-2221;Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00680+4.2.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-6886;MetaCyc: PWY-1622;MetaCyc: PWY-8004;MetaCyc: PWY-5723;Reactome: R-HSA-70263	"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis / Gluconeogenesis";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Ethylene biosynthesis V (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Glycolysis";"Glycerol degradation to butanol";"Methane metabolism";"Glycolysis II (from fructose 6-phosphate)";"1-butanol autotrophic biosynthesis (engineered)";"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I";"Rubisco shunt";"Gluconeogenesis"
JAMg_model_19866.2	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_19133.5	13	MetaCyc: PWY-5537;KEGG: 00720+6.2.1.5;Reactome: R-HSA-71403;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-5392;KEGG: 00640+6.2.1.5;KEGG: 00020+6.2.1.5;MetaCyc: PWY-7384;MetaCyc: PWY-6728;MetaCyc: PWY-5538;MetaCyc: PWY-5690;KEGG: 00660+6.2.1.5	"Pyruvate fermentation to acetate V";"Carbon fixation pathways in prokaryotes";"Citric acid cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Reductive TCA cycle II";"Propanoate metabolism";"Citrate cycle (TCA cycle)";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Methylaspartate cycle";"Pyruvate fermentation to acetate VI";"TCA cycle II (plants and fungi)";"C5-Branched dibasic acid metabolism"
JAMg_model_16736.1	2	Reactome: R-HSA-5682910;Reactome: R-HSA-5250971	"LGI-ADAM interactions";"Toxicity of botulinum toxin type C (BoNT/C)"
JAMg_model_20391.7	4	KEGG: 00230+6.3.5.2;MetaCyc: PWY-7221;KEGG: 00983+6.3.5.2;Reactome: R-HSA-73817	"Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis";"Drug metabolism - other enzymes";"Purine ribonucleoside monophosphate biosynthesis"
JAMg_model_17161.2	5	MetaCyc: PWY-6317;MetaCyc: PWY-3821;KEGG: 00520+2.7.1.6;KEGG: 00052+2.7.1.6;MetaCyc: PWY-6527	"D-galactose degradation I (Leloir pathway)";"D-galactose detoxification";"Amino sugar and nucleotide sugar metabolism";"Galactose metabolism";"Stachyose degradation"
JAMg_model_4998.6	1	Reactome: R-HSA-162658	"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_630.1	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_5587.5	2	Reactome: R-HSA-6807878;Reactome: R-HSA-445095	"COPI-mediated anterograde transport";"Interaction between L1 and Ankyrins"
JAMg_model_19131.1	14	MetaCyc: PWY-8052;KEGG: 00564+3.1.3.4;MetaCyc: PWY-8055;MetaCyc: PWY-6453;MetaCyc: PWY-8051;KEGG: 00565+3.1.3.4;KEGG: 00561+3.1.3.4;Reactome: R-HSA-1483213;KEGG: 00600+3.1.3.4;Reactome: R-HSA-1483191;MetaCyc: PWY-8053;MetaCyc: PWY-7782;Reactome: R-HSA-75109;Reactome: R-HSA-4419969	"2-arachidonoylglycerol biosynthesis";"Glycerophospholipid metabolism";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis";"Anandamide biosynthesis I";"Ether lipid metabolism";"Glycerolipid metabolism";"Synthesis of PE";"Sphingolipid metabolism";"Synthesis of PC";"Anandamide biosynthesis II";"Plasmalogen biosynthesis";"Triglyceride biosynthesis";"Depolymerisation of the Nuclear Lamina"
JAMg_model_13056.5	13	Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_15187.3	5	Reactome: R-HSA-111447;Reactome: R-HSA-5625740;Reactome: R-HSA-75035;Reactome: R-HSA-1445148;Reactome: R-HSA-5628897	"Activation of BAD and translocation to mitochondria";"RHO GTPases activate PKNs";"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"TP53 Regulates Metabolic Genes"
JAMg_model_10214.1	27	Reactome: R-HSA-159230;Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-168333;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-4570464;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-3232142;Reactome: R-HSA-4085377;Reactome: R-HSA-4551638;Reactome: R-HSA-159236;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-6784531;Reactome: R-HSA-159227;Reactome: R-HSA-168271	"Transport of the SLBP Dependant Mature mRNA";"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"SUMOylation of RNA binding proteins";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"snRNP Assembly";"SUMOylation of ubiquitinylation proteins";"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"tRNA processing in the nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus"
JAMg_model_20576.3	3	Reactome: R-HSA-5620916;Reactome: R-HSA-264876;Reactome: R-HSA-1445148	"VxPx cargo-targeting to cilium";"Insulin processing";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_2678.2	3	MetaCyc: PWY-4261;Reactome: R-HSA-75109;KEGG: 00561+2.7.1.30	"Glycerol degradation I";"Triglyceride biosynthesis";"Glycerolipid metabolism"
JAMg_model_9723.1	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_8635.2	3	MetaCyc: PWY-3961;KEGG: 00770+2.7.1.33;Reactome: R-HSA-196783	"Phosphopantothenate biosynthesis II";"Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis"
JAMg_model_13954.1	7	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"Thermogenesis";"Human papillomavirus infection";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway"
JAMg_model_6355.1	4	Reactome: R-HSA-400511;Reactome: R-HSA-381771;Reactome: R-HSA-422085;Reactome: R-HSA-1799339	"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"Synthesis, secretion, and deacylation of Ghrelin";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_19071.1	29	Reactome: R-HSA-6804756;Reactome: R-HSA-110314;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-6783310;Reactome: R-HSA-5655862;Reactome: R-HSA-6782135;Reactome: R-HSA-912446;Reactome: R-HSA-3371511;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-3371453;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-69166;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5358606;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397	"Regulation of TP53 Activity through Phosphorylation";"Recognition of DNA damage by PCNA-containing replication complex";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Fanconi Anemia Pathway";"Translesion synthesis by POLK";"Dual incision in TC-NER";"Meiotic recombination";"HSF1 activation";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Regulation of HSF1-mediated heat shock response";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"Removal of the Flap Intermediate";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER"
JAMg_model_14736.3	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_19146.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_947.2	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_15701.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_11139.1	4	MetaCyc: PWY-7822;MetaCyc: PWY-6902;MetaCyc: PWY-6855;KEGG: 00520+3.2.1.14	"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Chitin degradation I (archaea)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_9722.3	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_9736.1	2	Reactome: R-HSA-8866654;Reactome: R-HSA-9033241	"E3 ubiquitin ligases ubiquitinate target proteins";"Peroxisomal protein import"
JAMg_model_16232.1	4	KEGG: 00270+2.5.1.6;MetaCyc: PWY-5041;MetaCyc: PWY-5912;Reactome: R-HSA-156581	"Cysteine and methionine metabolism";"S-adenosyl-L-methionine cycle II";"2'-deoxymugineic acid phytosiderophore biosynthesis";"Methylation"
JAMg_model_13910.1	1	Reactome: R-HSA-209968	"Thyroxine biosynthesis"
JAMg_model_3453.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_4574.2	2	Reactome: R-HSA-446203;Reactome: R-HSA-1799339	"Asparagine N-linked glycosylation";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_18100.7	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_16474.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_715.2	1	Reactome: R-HSA-8854691	"Interleukin-20 family signaling"
JAMg_model_3669.4	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_13242.2	7	KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2;Reactome: R-HSA-8964539;KEGG: 00250+3.5.1.2;Reactome: R-HSA-5628897;MetaCyc: PWY-5921;Reactome: R-HSA-210500	"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism";"Glutamate and glutamine metabolism";"Alanine, aspartate and glutamate metabolism";"TP53 Regulates Metabolic Genes";"Glutaminyl-trnagln biosynthesis via transamidation";"Glutamate Neurotransmitter Release Cycle"
JAMg_model_3318.3	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_15895.1	7	Reactome: R-HSA-165159;Reactome: R-HSA-5628897;Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-166208;Reactome: R-HSA-9639288;Reactome: R-HSA-380972	"mTOR signalling";"TP53 Regulates Metabolic Genes";"Regulation of PTEN gene transcription";"Macroautophagy";"mTORC1-mediated signalling";"Amino acids regulate mTORC1";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_4101.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"Generic Transcription Pathway";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_3327.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_9200.3	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_9859.1	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_19116.6	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_17984.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_10712.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_19051.1	2	Reactome: R-HSA-2299718;Reactome: R-HSA-2514853	"Condensation of Prophase Chromosomes";"Condensation of Prometaphase Chromosomes"
JAMg_model_1374.1	9	Reactome: R-HSA-3560783;Reactome: R-HSA-1971475;Reactome: R-HSA-975634;Reactome: R-HSA-2022928;Reactome: R-HSA-2024096;Reactome: R-HSA-4420332;Reactome: R-HSA-3656253;Reactome: R-HSA-3560801;Reactome: R-HSA-3656237	"Defective B4GALT7 causes EDS, progeroid type";"A tetrasaccharide linker sequence is required for GAG synthesis";"Retinoid metabolism and transport";"HS-GAG biosynthesis";"HS-GAG degradation";"Defective B3GALT6 causes EDSP2 and SEMDJL1";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"Defective B3GAT3 causes JDSSDHD";"Defective EXT2 causes exostoses 2"
JAMg_model_8725.4	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_8177.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-445095	"Phase 0 - rapid depolarisation";"Interaction between L1 and Ankyrins"
JAMg_model_2055.1	6	Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-6791226;Reactome: R-HSA-380994;Reactome: R-HSA-450513;Reactome: R-HSA-450385	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Major pathway of rRNA processing in the nucleolus and cytosol";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA"
JAMg_model_9989.1	4	Reactome: R-HSA-2467813;Reactome: R-HSA-2468052;Reactome: R-HSA-2470946;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"Establishment of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin";"Resolution of Sister Chromatid Cohesion"
JAMg_model_14961.2	4	KEGG: 00785+2.8.1.8;Reactome: R-HSA-389661;MetaCyc: PWY-6987;MetaCyc: PWY-7382	"Lipoic acid metabolism";"Glyoxylate metabolism and glycine degradation";"Lipoate biosynthesis and incorporation III (Bacillus)";"Lipoate biosynthesis and incorporation IV (yeast)"
JAMg_model_8254.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-5576893	"Phase 0 - rapid depolarisation";"Phase 2 - plateau phase"
JAMg_model_12928.1	14	KEGG: 00190+1.3.5.1;MetaCyc: PWY-7279;Reactome: R-HSA-71403;Reactome: R-HSA-611105;KEGG: 00650+1.3.5.1;MetaCyc: PWY-6969;MetaCyc: PWY-7254;MetaCyc: PWY-561;KEGG: 00720+1.3.5.1;MetaCyc: PWY-6728;KEGG: 00020+1.3.5.1;MetaCyc: PWY-3781;MetaCyc: PWY-4302;MetaCyc: PWY-5690	"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"Citric acid cycle (TCA cycle)";"Respiratory electron transport";"Butanoate metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"TCA cycle VII (acetate-producers)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Citrate cycle (TCA cycle)";"Aerobic respiration I (cytochrome c)";"Aerobic respiration III (alternative oxidase pathway)";"TCA cycle II (plants and fungi)"
JAMg_model_16231.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_3895.1	3	Reactome: R-HSA-749476;Reactome: R-HSA-76066;Reactome: R-HSA-76061	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter"
JAMg_model_17219.2	5	Reactome: R-HSA-8856828;Reactome: R-HSA-6811440;Reactome: R-HSA-8856825;Reactome: R-HSA-432722;Reactome: R-HSA-6798695	"Clathrin-mediated endocytosis";"Retrograde transport at the Trans-Golgi-Network";"Cargo recognition for clathrin-mediated endocytosis";"Golgi Associated Vesicle Biogenesis";"Neutrophil degranulation"
JAMg_model_4786.1	6	Reactome: R-HSA-9010553;Reactome: R-HSA-975957;Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72163;Reactome: R-HSA-72187	"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing"
JAMg_model_20832.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_18860.3	2	Reactome: R-HSA-8854214;Reactome: R-HSA-8873719	"TBC/RABGAPs";"RAB geranylgeranylation"
JAMg_model_8210.5	6	Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_21295.3	7	MetaCyc: PWY-6824;MetaCyc: PWY-5469;MetaCyc: PWY-5466;MetaCyc: PWY-7214;MetaCyc: PWY-7445;MetaCyc: PWY-5461;KEGG: 00940+1.11.1.7	"Justicidin B biosynthesis";"Sesamin biosynthesis";"Matairesinol biosynthesis";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation";"Betanidin degradation";"Phenylpropanoid biosynthesis"
JAMg_model_5588.6	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_1340.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_11998.1	2	Reactome: R-HSA-445095;Reactome: R-HSA-5576892	"Interaction between L1 and Ankyrins";"Phase 0 - rapid depolarisation"
JAMg_model_12471.3	6	Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72689;Reactome: R-HSA-72649	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"Formation of a pool of free 40S subunits";"Translation initiation complex formation"
JAMg_model_2017.6	5	Reactome: R-HSA-6798695;KEGG: 00760+6.3.4.21;Reactome: R-HSA-1368108;MetaCyc: PWY-5381;Reactome: R-HSA-197264	"Neutrophil degranulation";"Nicotinate and nicotinamide metabolism";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Pyridine nucleotide cycling (plants)";"Nicotinamide salvaging"
JAMg_model_18077.1	1	Reactome: R-HSA-1296052	"Ca2+ activated K+ channels"
JAMg_model_13671.4	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_7500.2	19	MetaCyc: PWY-7007;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7606;MetaCyc: PWY-7726;MetaCyc: PWY-7858;KEGG: 00071+1.3.3.6;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7288;MetaCyc: PWY-7338;MetaCyc: PWY-7291;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-5136;MetaCyc: PWY-7574;MetaCyc: PWY-7337;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6	"Methyl ketone biosynthesis (engineered)";"Propanoate metabolism";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(5Z)-dodecenoate biosynthesis II";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"Fatty acid beta-oxidation VII (yeast peroxisome)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Fatty acid beta-oxidation II (plant peroxisome)";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism"
JAMg_model_11841.1	5	Reactome: R-HSA-162588;Reactome: R-HSA-174490;Reactome: R-HSA-9610379;Reactome: R-HSA-9615710;Reactome: R-HSA-917729	"Budding and maturation of HIV virion";"Membrane binding and targetting of GAG proteins";"HCMV Late Events";"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)"
JAMg_model_64.1	7	Reactome: R-HSA-76071;Reactome: R-HSA-73980;Reactome: R-HSA-749476;Reactome: R-HSA-76061;Reactome: R-HSA-73780;Reactome: R-HSA-1834949;Reactome: R-HSA-76066	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Chain Elongation";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_1960.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_15812.5	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_18015.1	5	Reactome: R-HSA-3214815;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-350054;Reactome: R-HSA-2644606	"HDACs deacetylate histones";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_16525.1	7	Reactome: R-HSA-1538133;Reactome: R-HSA-69202;Reactome: R-HSA-156711;Reactome: R-HSA-1362277;Reactome: R-HSA-69205;Reactome: R-HSA-1362300;Reactome: R-HSA-69656	"G0 and Early G1";"Cyclin E associated events during G1/S transition";"Polo-like kinase mediated events";"Transcription of E2F targets under negative control by DREAM complex";"G1/S-Specific Transcription";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"Cyclin A:Cdk2-associated events at S phase entry"
JAMg_model_18048.7	5	KEGG: 00520+3.5.99.6;MetaCyc: PWY-6855;Reactome: R-HSA-70171;MetaCyc: PWY-6906;MetaCyc: PWY-5514	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)";"Glycolysis";"Chitin derivatives degradation";"UDP-N-acetyl-D-galactosamine biosynthesis II"
JAMg_model_9473.2	8	MetaCyc: PWY-5743;MetaCyc: PWY-7117;MetaCyc: PWY-6142;KEGG: 00910+4.2.1.1;MetaCyc: PWY-7115;MetaCyc: PWY-5789;MetaCyc: PWY-241;MetaCyc: PWY-5744	"3-hydroxypropanoate cycle";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Nitrogen metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle";"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"Glyoxylate assimilation"
JAMg_model_8897.5	3	Reactome: R-HSA-611105;Reactome: R-HSA-6799198;Reactome: R-HSA-1268020	"Respiratory electron transport";"Complex I biogenesis";"Mitochondrial protein import"
JAMg_model_10598.3	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5689880	"UCH proteinases";"Ub-specific processing proteases"
JAMg_model_15493.2	20	MetaCyc: PWY-7007;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7606;MetaCyc: PWY-7726;MetaCyc: PWY-7858;KEGG: 00071+1.3.3.6;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7338;MetaCyc: PWY-7288;MetaCyc: PWY-7291;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-7340;MetaCyc: PWY-6920;MetaCyc: PWY-5136;Reactome: R-HSA-9033241;MetaCyc: PWY-7337;MetaCyc: PWY-7574;KEGG: 00410+1.3.3.6;MetaCyc: PWY-6837	"Methyl ketone biosynthesis (engineered)";"Propanoate metabolism";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(5Z)-dodecenoate biosynthesis II";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"6-gingerol analog biosynthesis (engineered)";"Fatty acid beta-oxidation II (plant peroxisome)";"Peroxisomal protein import";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Propanoyl-coa degradation II";"beta-Alanine metabolism";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)"
JAMg_model_14659.1	1	KEGG: 00970+6.3.5.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_958.1	3	Reactome: R-HSA-2022854;Reactome: R-HSA-5173105;Reactome: R-HSA-5083627	"Keratan sulfate biosynthesis";"O-linked glycosylation";"Defective LARGE causes MDDGA6 and MDDGB6"
JAMg_model_19081.4	2	KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1	"Pentose phosphate pathway";"Purine metabolism"
JAMg_model_16474.3	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_17294.1	5	Reactome: R-HSA-937072;Reactome: R-HSA-937041;Reactome: R-HSA-166166;Reactome: R-HSA-936964;Reactome: R-HSA-168164	"TRAF6-mediated induction of TAK1 complex within TLR4 complex";"IKK complex recruitment mediated by RIP1";"MyD88-independent TLR4 cascade";"Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon";"Toll Like Receptor 3 (TLR3) Cascade"
JAMg_model_19272.6	2	KEGG: 00340+2.1.1.22;Reactome: R-HSA-70921	"Histidine metabolism";"Histidine catabolism"
JAMg_model_8098.5	1	Reactome: R-HSA-163841	"Gamma carboxylation, hypusine formation and arylsulfatase activation"
JAMg_model_19607.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_13888.1	4	Reactome: R-HSA-422085;Reactome: R-HSA-381771;Reactome: R-HSA-1799339;Reactome: R-HSA-400511	"Synthesis, secretion, and deacylation of Ghrelin";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"SRP-dependent cotranslational protein targeting to membrane";"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)"
JAMg_model_8843.1	1	Reactome: R-HSA-5689880	"Ub-specific processing proteases"
JAMg_model_17732.1	2	Reactome: R-HSA-373080;Reactome: R-HSA-3238698	"Class B/2 (Secretin family receptors)";"WNT ligand biogenesis and trafficking"
JAMg_model_20873.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_4580.1	7	Reactome: R-HSA-191273;MetaCyc: PWY-6074;KEGG: 00100+1.3.1.70;MetaCyc: PWY-8026;Reactome: R-HSA-9022692;MetaCyc: PWY-7154;MetaCyc: PWY-2541	"Cholesterol biosynthesis";"Zymosterol biosynthesis";"Steroid biosynthesis";"Sterol biosynthesis (methylotrophs)";"Regulation of MECP2 expression and activity";"Ergosterol biosynthesis II";"Phytosterol biosynthesis (plants)"
JAMg_model_2951.1	2	KEGG: 00040+5.3.1.5;KEGG: 00051+5.3.1.5	"Pentose and glucuronate interconversions";"Fructose and mannose metabolism"
JAMg_model_14952.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15277.4	10	MetaCyc: PWY-1722;KEGG: 00720+1.5.1.5+3.5.4.9;KEGG: 00670+1.5.1.5+3.5.4.9;MetaCyc: PWY-2201;MetaCyc: PWY-5497;MetaCyc: PWY-3841;MetaCyc: PWY-7909;MetaCyc: PWY-6613;Reactome: R-HSA-196757;MetaCyc: PWY-5030	"Formate assimilation into 5,10-methylenetetrahydrofolate";"Carbon fixation pathways in prokaryotes";"One carbon pool by folate";"Folate transformations I";"Purine nucleobases degradation II (anaerobic)";"Folate transformations II (plants)";"Formaldehyde oxidation VII (THF pathway)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Metabolism of folate and pterines";"L-histidine degradation III"
JAMg_model_19513.1	2	Reactome: R-HSA-8949215;Reactome: R-HSA-8949664	"Mitochondrial calcium ion transport";"Processing of SMDT1"
JAMg_model_17436.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_4835.1	1	Reactome: R-HSA-5689877	"Josephin domain DUBs"
JAMg_model_8210.4	6	Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_985.2	3	Reactome: R-HSA-5628897;KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"TP53 Regulates Metabolic Genes";"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_13169.1	9	MetaCyc: PWY-5664;MetaCyc: PWY-5663;MetaCyc: PWY-6703;MetaCyc: PWY-7442;MetaCyc: PWY-7852;KEGG: 00790+3.5.4.16;Reactome: R-HSA-1474151;MetaCyc: PWY-6983;MetaCyc: PWY-6147	"Erythro-tetrahydrobiopterin biosynthesis II";"Erythro-tetrahydrobiopterin biosynthesis I";"Preq0 biosynthesis";"Drosopterin and aurodrosopterin biosynthesis";"6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium)";"Folate biosynthesis";"Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation";"Threo-tetrahydrobiopterin biosynthesis";"6-hydroxymethyl-dihydropterin diphosphate biosynthesis I"
JAMg_model_9043.4	9	Reactome: R-HSA-5617472;Reactome: R-HSA-1989781;Reactome: R-HSA-1368082;Reactome: R-HSA-400253;Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-2426168;Reactome: R-HSA-1368108;Reactome: R-HSA-2151201	"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"PPARA activates gene expression";"RORA activates gene expression";"Circadian Clock";"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"Activation of gene expression by SREBF (SREBP)";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_2629.2	2	KEGG: 00071+2.3.1.21;MetaCyc: PWY-6111	"Fatty acid degradation";"Mitochondrial L-carnitine shuttle"
JAMg_model_18048.5	5	Reactome: R-HSA-70171;MetaCyc: PWY-5514;MetaCyc: PWY-6906;MetaCyc: PWY-6855;KEGG: 00520+3.5.99.6	"Glycolysis";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Chitin derivatives degradation";"Chitin degradation I (archaea)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_14443.1	2	Reactome: R-HSA-8964038;Reactome: R-HSA-6798695	"LDL clearance";"Neutrophil degranulation"
JAMg_model_17862.1	56	Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5610785;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258	"ABC-family proteins mediated transport";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"GLI3 is processed to GLI3R by the proteasome";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL"
JAMg_model_13892.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_14839.1	31	MetaCyc: PWYG-321;MetaCyc: PWY-5367;MetaCyc: PWY-7746;Reactome: R-HSA-199220;MetaCyc: PWY-5994;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWY-5366;MetaCyc: PWY-7723;MetaCyc: PWY-7388;MetaCyc: PWY-7663;MetaCyc: PWY-5971;MetaCyc: PWY-7858;MetaCyc: PWY-8047;MetaCyc: PWY-8049;Reactome: R-HSA-163765;MetaCyc: PWY-5142;MetaCyc: PWY-5989;MetaCyc: PWY-5147;Reactome: R-HSA-9029558;MetaCyc: PWY-5966-1;MetaCyc: PWY-7664;MetaCyc: PWY-5973;Reactome: R-HSA-75105;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-6282;MetaCyc: PWY-6113;MetaCyc: PWY-4381;MetaCyc: PWY-6519;MetaCyc: PWY-8012;Reactome: R-HSA-2426168;MetaCyc: PWY-6799	"";"Petroselinate biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Vitamin B5 (pantothenate) metabolism";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Fatty acid biosynthesis";"Palmitoleate biosynthesis II (plants and bacteria)";"Bacterial bioluminescence";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Gondoate biosynthesis (anaerobic)";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"(5Z)-dodecenoate biosynthesis II";"Bryostatin biosynthesis";"Pederin biosynthesis";"ChREBP activates metabolic gene expression";"Acyl-[acyl-carrier protein] thioesterase pathway";"Stearate biosynthesis II (bacteria and plants)";"Oleate biosynthesis I (plants)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Oleate biosynthesis IV (anaerobic)";"Cis-vaccenate biosynthesis";"Fatty acyl-CoA biosynthesis";"Biotin metabolism";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Superpathway of mycolate biosynthesis";"Fatty acid biosynthesis initiation (bacteria and plants)";"8-amino-7-oxononanoate biosynthesis I";"Mupirocin biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Fatty acid biosynthesis initiation (plant mitochondria)"
JAMg_model_7691.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-6783310	"Protein ubiquitination";"Fanconi Anemia Pathway"
JAMg_model_5645.1	1	Reactome: R-HSA-162791	"Attachment of GPI anchor to uPAR"
JAMg_model_16331.1	9	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-6782315;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-6804756	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"tRNA modification in the nucleus and cytosol";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_21105.1	4	Reactome: R-HSA-936440;Reactome: R-HSA-5205685;Reactome: R-HSA-1632852;Reactome: R-HSA-8934903	"Negative regulators of DDX58/IFIH1 signaling";"Pink/Parkin Mediated Mitophagy";"Macroautophagy";"Receptor Mediated Mitophagy"
JAMg_model_6181.1	2	Reactome: R-HSA-3214847;Reactome: R-HSA-6804758	"HATs acetylate histones";"Regulation of TP53 Activity through Acetylation"
JAMg_model_9054.3	3	MetaCyc: PWY-6117;KEGG: 00330+2.3.1.57;MetaCyc: PWY-0	"Spermine and spermidine degradation I";"Arginine and proline metabolism";"Putrescine degradation III"
JAMg_model_11483.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_650.2	4	KEGG: 00270+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00480+2.5.1.16;Reactome: R-HSA-351202	"Cysteine and methionine metabolism";"Arginine and proline metabolism";"Glutathione metabolism";"Metabolism of polyamines"
JAMg_model_1124.5	3	Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438	"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic"
JAMg_model_17812.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_2310.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4116.3	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_10824.3	12	MetaCyc: PWY-6683;KEGG: 00920+2.7.1.25;KEGG: 00230+2.7.7.4;KEGG: 00261+2.7.7.4;MetaCyc: PWY-5340;MetaCyc: PWY-6932;MetaCyc: PWY-5278;KEGG: 00920+2.7.7.4;KEGG: 00230+2.7.1.25;Reactome: R-HSA-174362;Reactome: R-HSA-2408550;KEGG: 00450+2.7.7.4	"Assimilatory sulfate reduction III";"Sulfur metabolism";"Purine metabolism";"Monobactam biosynthesis";"Sulfate activation for sulfonation";"Selenate reduction";"Sulfite oxidation III";"Sulfur metabolism";"Purine metabolism";"Transport and synthesis of PAPS";"Metabolism of ingested H2SeO4 and H2SeO3 into H2Se";"Selenocompound metabolism"
JAMg_model_19398.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11704.2	7	KEGG: 00230+2.4.2.14;MetaCyc: PWY-6122;MetaCyc: PWY-6277;MetaCyc: PWY-6121;MetaCyc: PWY-7282;KEGG: 00250+2.4.2.14;Reactome: R-HSA-73817	"Purine metabolism";"5-aminoimidazole ribonucleotide biosynthesis II";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis I";"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"Alanine, aspartate and glutamate metabolism";"Purine ribonucleoside monophosphate biosynthesis"
JAMg_model_14445.3	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_19655.3	3	Reactome: R-HSA-189451;MetaCyc: PWY-7856;KEGG: 00860+2.5.1.141	"Heme biosynthesis";"Heme a biosynthesis";"Porphyrin and chlorophyll metabolism"
JAMg_model_3399.1	12	Reactome: R-HSA-1989781;Reactome: R-HSA-9018519;Reactome: R-HSA-1368082;Reactome: R-HSA-383280;Reactome: R-HSA-400253;Reactome: R-HSA-212436;Reactome: R-HSA-400206;Reactome: R-HSA-381340;Reactome: R-HSA-2426168;Reactome: R-HSA-3371453;Reactome: R-HSA-1368108;Reactome: R-HSA-2151201	"PPARA activates gene expression";"Estrogen-dependent gene expression";"RORA activates gene expression";"Nuclear Receptor transcription pathway";"Circadian Clock";"Generic Transcription Pathway";"Regulation of lipid metabolism by PPARalpha";"Transcriptional regulation of white adipocyte differentiation";"Activation of gene expression by SREBF (SREBP)";"Regulation of HSF1-mediated heat shock response";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_13671.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_14757.3	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_745.1	2	Reactome: R-HSA-6782315;MetaCyc: PWY-6829	"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)"
JAMg_model_18047.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_21161.3	7	Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380270;Reactome: R-HSA-8854518;Reactome: R-HSA-2565942	"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_957.2	4	Reactome: R-HSA-6811434;Reactome: R-HSA-5625970;Reactome: R-HSA-2132295;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate KTN1";"MHC class II antigen presentation";"Kinesins"
JAMg_model_3789.3	2	Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.24	"Lysosomal oligosaccharide catabolism";"Other glycan degradation"
JAMg_model_13400.2	10	Reactome: R-HSA-5684264;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-2565942;Reactome: R-HSA-202424;Reactome: R-HSA-8951664;Reactome: R-HSA-2871837;Reactome: R-HSA-5676590;Reactome: R-HSA-5607764;Reactome: R-HSA-1169091	"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of PLK1 Activity at G2/M Transition";"Downstream TCR signaling";"Neddylation";"FCERI mediated NF-kB activation";"NIK-->noncanonical NF-kB signaling";"CLEC7A (Dectin-1) signaling";"Activation of NF-kappaB in B cells"
JAMg_model_9755.1	2	Reactome: R-HSA-425366;Reactome: R-HSA-1483191	"Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC"
JAMg_model_8298.2	4	Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837;Reactome: R-HSA-1912420	"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases";"Pre-NOTCH Processing in Golgi"
JAMg_model_15268.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_8921.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_8935.2	4	Reactome: R-HSA-3108214;Reactome: R-HSA-532668;Reactome: R-HSA-5696395;Reactome: R-HSA-5696394	"SUMOylation of DNA damage response and repair proteins";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Formation of Incision Complex in GG-NER";"DNA Damage Recognition in GG-NER"
JAMg_model_8730.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_12033.1	5	KEGG: 00520+3.2.1.14;Reactome: R-HSA-156588;MetaCyc: PWY-7822;MetaCyc: PWY-6902;MetaCyc: PWY-6855	"Amino sugar and nucleotide sugar metabolism";"Glucuronidation";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Chitin degradation I (archaea)"
JAMg_model_3210.1	1	Reactome: R-HSA-69231	"Cyclin D associated events in G1"
JAMg_model_12749.5	12	Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-2132295;Reactome: R-HSA-9648025;Reactome: R-HSA-141444;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-9609690;Reactome: R-HSA-68877	"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"MHC class II antigen presentation";"EML4 and NUDC in mitotic spindle formation";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"HCMV Early Events";"Mitotic Prometaphase"
JAMg_model_18440.3	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_7738.1	3	MetaCyc: PWY-4361;MetaCyc: PWY-7174;KEGG: 00270+5.3.1.23	"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"Cysteine and methionine metabolism"
JAMg_model_12281.4	2	Reactome: R-HSA-983231;Reactome: R-HSA-5205685	"Factors involved in megakaryocyte development and platelet production";"Pink/Parkin Mediated Mitophagy"
JAMg_model_20866.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_5067.2	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_6326.2	14	Reactome: R-HSA-167246;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-167242;Reactome: R-HSA-167287;Reactome: R-HSA-6796648;Reactome: R-HSA-167238;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-167200	"Tat-mediated elongation of the HIV-1 transcript";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"Abortive elongation of HIV-1 transcript in the absence of Tat";"HIV elongation arrest and recovery";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of Tat-mediated HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Formation of HIV-1 elongation complex containing HIV-1 Tat"
JAMg_model_551.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_20818.1	5	Reactome: R-HSA-3214858;Reactome: R-HSA-1266695;Reactome: R-HSA-3247509;Reactome: R-HSA-8939243;Reactome: R-HSA-201722	"RMTs methylate histone arginines";"Interleukin-7 signaling";"Chromatin modifying enzymes";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_19503.2	58	KEGG: 00592+4.2.1.17;MetaCyc: PWY-7401;MetaCyc: PWY-7726;KEGG: 00071+4.2.1.17+1.1.1.35;Reactome: R-HSA-77350;MetaCyc: PWY-5109;KEGG: 00362+4.2.1.17+1.1.1.35;KEGG: 00380+4.2.1.17;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-7007;Reactome: R-HSA-77285;MetaCyc: PWY-6944;KEGG: 00903+4.2.1.17;KEGG: 00650+4.2.1.17;Reactome: R-HSA-77348;MetaCyc: PWY-5177;MetaCyc: PWY-6583;MetaCyc: PWY-5138;Reactome: R-HSA-77346;KEGG: 00627+4.2.1.17;KEGG: 00410+4.2.1.17;KEGG: 00281+4.2.1.17;Reactome: R-HSA-1482798;KEGG: 00362+4.2.1.17;KEGG: 00360+4.2.1.17;KEGG: 00310+4.2.1.17+1.1.1.35;MetaCyc: PWY-5789;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-7656;MetaCyc: PWY-6883;MetaCyc: PWY-7216;KEGG: 00720+4.2.1.17+1.1.1.35;KEGG: 00930+4.2.1.17+1.1.1.35;KEGG: 00071+4.2.1.17+1.1.1.211;MetaCyc: PWY-7779;KEGG: 00930+4.2.1.17;MetaCyc: PWY-7606;KEGG: 00640+4.2.1.17;KEGG: 00310+4.2.1.17;KEGG: 00281+4.2.1.17+1.1.1.35;MetaCyc: PWY-1361;KEGG: 00623+1.1.1.35;MetaCyc: PWY-7778;MetaCyc: PWY-6945;MetaCyc: PWY-6435;KEGG: 00650+4.2.1.17+1.1.1.35;Reactome: R-HSA-77288;KEGG: 00280+4.2.1.17;MetaCyc: PWY-7654;Reactome: R-HSA-77310;KEGG: 00062+4.2.1.17+1.1.1.211;KEGG: 00062+4.2.1.17+1.1.1.35;KEGG: 00720+4.2.1.17;MetaCyc: PWY-5136;Reactome: R-HSA-77305;MetaCyc: PWY-6863;MetaCyc: PWY-6946;MetaCyc: PWY-7094	"alpha-Linolenic acid metabolism";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Fatty acid degradation";"Beta oxidation of hexanoyl-CoA to butanoyl-CoA";"Fermentation to 2-methylbutanoate";"Benzoate degradation";"Tryptophan metabolism";"Tryptophan metabolism";"Methyl ketone biosynthesis (engineered)";"Beta oxidation of myristoyl-CoA to lauroyl-CoA";"Androstenedione degradation";"Limonene and pinene degradation";"Butanoate metabolism";"Beta oxidation of octanoyl-CoA to hexanoyl-CoA";"Glutaryl-coa degradation";"Pyruvate fermentation to butanol I";"Fatty acid beta-oxidation IV (unsaturated, even number)";"Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA";"Aminobenzoate degradation";"beta-Alanine metabolism";"Geraniol degradation";"Acyl chain remodeling of CL";"Benzoate degradation";"Phenylalanine metabolism";"Lysine degradation";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Valine, leucine and isoleucine degradation";"Spodoptera littoralis pheromone biosynthesis";"Pyruvate fermentation to butanol II (engineered)";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Carbon fixation pathways in prokaryotes";"Caprolactam degradation";"Fatty acid degradation";"Methyl tert-butyl ether degradation";"Caprolactam degradation";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Propanoate metabolism";"Lysine degradation";"Geraniol degradation";"Benzoyl-coa degradation I (aerobic)";"Toluene degradation";"2-methylpropene degradation";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"4-hydroxybenzoate biosynthesis III (plants)";"Butanoate metabolism";"mitochondrial fatty acid beta-oxidation of unsaturated fatty acids";"Valine, leucine and isoleucine degradation";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Beta oxidation of lauroyl-CoA to decanoyl-CoA-CoA";"Fatty acid elongation";"Fatty acid elongation";"Carbon fixation pathways in prokaryotes";"Fatty acid beta-oxidation II (plant peroxisome)";"Beta oxidation of palmitoyl-CoA to myristoyl-CoA";"Pyruvate fermentation to hexanol (engineered)";"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Fatty acid salvage"
JAMg_model_6691.4	6	MetaCyc: PWY-6733;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656	"Sporopollenin precursors biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis"
JAMg_model_13671.5	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_10663.1	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_14061.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_12479.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_10492.4	1	Reactome: R-HSA-110357	"Displacement of DNA glycosylase by APEX1"
JAMg_model_20866.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_10797.8	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_15677.1	33	Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-4570464;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-3232142;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-68877;Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-5663220;Reactome: R-HSA-159236;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-1169408;Reactome: R-HSA-168333;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-168276;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-159227;Reactome: R-HSA-4551638	"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"SUMOylation of RNA binding proteins";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"snRNP Assembly";"SUMOylation of ubiquitinylation proteins";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"Mitotic Prometaphase";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"RHO GTPases Activate Formins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"ISG15 antiviral mechanism";"NEP/NS2 Interacts with the Cellular Export Machinery";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"NS1 Mediated Effects on Host Pathways";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of the SLBP independent Mature mRNA";"SUMOylation of chromatin organization proteins"
JAMg_model_18156.3	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_3425.2	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_3005.1	52	Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-9010553;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534	"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Regulation of expression of SLITs and ROBOs";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"ABC-family proteins mediated transport";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4"
JAMg_model_20521.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_12493.1	4	MetaCyc: PWY-7849;MetaCyc: PWY-7394;KEGG: 00230+4.1.1.97;MetaCyc: PWY-5691	"Urate conversion to allantoin III";"Urate conversion to allantoin II";"Purine metabolism";"Urate conversion to allantoin I"
JAMg_model_3349.1	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_11299.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_12764.1	16	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-975956	"Viral mRNA Translation";"Peptide chain elongation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_4371.5	5	Reactome: R-HSA-6798695;Reactome: R-HSA-3270619;Reactome: R-HSA-164843;Reactome: R-HSA-5693571;Reactome: R-HSA-1834949	"Neutrophil degranulation";"IRF3-mediated induction of type I IFN";"2-LTR circle formation";"Nonhomologous End-Joining (NHEJ)";"Cytosolic sensors of pathogen-associated DNA"
JAMg_model_15768.1	5	MetaCyc: PWY-7426;Reactome: R-HSA-975578;KEGG: 00510+2.4.1.68;KEGG: 00533+2.4.1.68;KEGG: 00513+2.4.1.68	"Complex N-linked glycan biosynthesis (vertebrates)";"Reactions specific to the complex N-glycan synthesis pathway";"N-Glycan biosynthesis";"Glycosaminoglycan biosynthesis - keratan sulfate";"Various types of N-glycan biosynthesis"
JAMg_model_10683.4	1	Reactome: R-HSA-880009	"Interconversion of 2-oxoglutarate and 2-hydroxyglutarate"
JAMg_model_6324.6	10	KEGG: 00564+2.3.1.15;MetaCyc: PWY-7411;Reactome: R-HSA-1483166;MetaCyc: PWY-8055;MetaCyc: PWY-6453;KEGG: 00561+2.3.1.15;MetaCyc: PWY-8053;MetaCyc: PWY-5667;MetaCyc: PWY-7587;MetaCyc: PWY-8051	"Glycerophospholipid metabolism";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis";"Glycerolipid metabolism";"Anandamide biosynthesis II";"CDP-diacylglycerol biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"Anandamide biosynthesis I"
JAMg_model_11719.2	7	Reactome: R-HSA-174403;MetaCyc: PWY-6840;Reactome: R-HSA-5578999;KEGG: 00480+6.3.2.2;MetaCyc: PWY-8043;KEGG: 00270+6.3.2.2;MetaCyc: PWY-7255	"Glutathione synthesis and recycling";"Homoglutathione biosynthesis";"Defective GCLC causes Hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency (HAGGSD)";"Glutathione metabolism";"Ophthalmate biosynthesis";"Cysteine and methionine metabolism";"Ergothioneine biosynthesis I (bacteria)"
JAMg_model_16527.2	11	MetaCyc: PWY-5675;KEGG: 00630+6.3.1.2;Reactome: R-HSA-8964539;MetaCyc: PWY-6963;MetaCyc: PWY-381;KEGG: 00220+6.3.1.2;Reactome: R-HSA-210455;MetaCyc: PWY-6964;MetaCyc: PWY-6549;KEGG: 00250+6.3.1.2;KEGG: 00910+6.3.1.2	"Nitrate reduction V (assimilatory)";"Glyoxylate and dicarboxylate metabolism";"Glutamate and glutamine metabolism";"Ammonia assimilation cycle I";"Nitrate reduction II (assimilatory)";"Arginine biosynthesis";"Astrocytic Glutamate-Glutamine Uptake And Metabolism";"Ammonia assimilation cycle II";"L-glutamine biosynthesis III";"Alanine, aspartate and glutamate metabolism";"Nitrogen metabolism"
JAMg_model_12926.1	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_1340.2	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_15935.1	1	Reactome: R-HSA-2470946	"Cohesin Loading onto Chromatin"
JAMg_model_14870.2	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_268.1	2	Reactome: R-HSA-975577;Reactome: R-HSA-2022854	"N-Glycan antennae elongation";"Keratan sulfate biosynthesis"
JAMg_model_18332.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_4401.1	4	Reactome: R-HSA-73856;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-77595	"RNA Polymerase II Transcription Termination";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Processing of Intronless Pre-mRNAs"
JAMg_model_650.5	4	Reactome: R-HSA-351202;KEGG: 00480+2.5.1.16;KEGG: 00270+2.5.1.16;KEGG: 00330+2.5.1.16	"Metabolism of polyamines";"Glutathione metabolism";"Cysteine and methionine metabolism";"Arginine and proline metabolism"
JAMg_model_3741.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_9978.1	2	Reactome: R-HSA-3928665;Reactome: R-HSA-2682334	"EPH-ephrin mediated repulsion of cells";"EPH-Ephrin signaling"
JAMg_model_12586.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_1143.1	2	Reactome: R-HSA-1268020;Reactome: R-HSA-8869496	"Mitochondrial protein import";"TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation"
JAMg_model_14327.1	2	Reactome: R-HSA-975956;Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_6485.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_10980.1	6	Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444	"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_8153.6	3	KEGG: 00680+3.1.3.3;Reactome: R-HSA-977347;KEGG: 00260+3.1.3.3	"Methane metabolism";"Serine biosynthesis";"Glycine, serine and threonine metabolism"
JAMg_model_12111.1	2	Reactome: R-HSA-1483152;Reactome: R-HSA-1483115	"Hydrolysis of LPE";"Hydrolysis of LPC"
JAMg_model_13657.2	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_9900.5	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_18158.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_15154.7	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_8502.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_15494.1	2	KEGG: 04070+2.7.11.13;Reactome: R-HSA-5625740	"Phosphatidylinositol signaling system";"RHO GTPases activate PKNs"
JAMg_model_3981.2	2	KEGG: 00620+3.6.1.7;KEGG: 00627+3.6.1.7	"Pyruvate metabolism";"Aminobenzoate degradation"
JAMg_model_14567.1	1	Reactome: R-HSA-191859	"snRNP Assembly"
JAMg_model_12710.3	6	MetaCyc: PWY-6907;Reactome: R-HSA-196819;MetaCyc: PWY-6898;MetaCyc: PWY-7356;KEGG: 00730+2.7.6.2;MetaCyc: PWY-6908	"Thiamine diphosphate biosynthesis III (Staphylococcus)";"Vitamin B1 (thiamin) metabolism";"Thiamine salvage III";"Thiamine salvage IV (yeast)";"Thiamine metabolism";"Thiamine diphosphate biosynthesis IV (eukaryotes)"
JAMg_model_11050.1	6	Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion"
JAMg_model_17337.2	1	Reactome: R-HSA-6811438	"Intra-Golgi traffic"
JAMg_model_13671.3	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_5804.2	2	KEGG: 00260+4.3.1.19;KEGG: 00290+4.3.1.19	"Glycine, serine and threonine metabolism";"Valine, leucine and isoleucine biosynthesis"
JAMg_model_8153.3	3	Reactome: R-HSA-977347;KEGG: 00680+3.1.3.3;KEGG: 00260+3.1.3.3	"Serine biosynthesis";"Methane metabolism";"Glycine, serine and threonine metabolism"
JAMg_model_10530.1	8	KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-983168	"Relaxin signaling pathway";"Thermogenesis";"Human papillomavirus infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_115.1	3	KEGG: 00220+3.5.1.14;Reactome: R-HSA-5423646;Reactome: R-HSA-5579007	"Arginine biosynthesis";"Aflatoxin activation and detoxification";"Defective ACY1 causes encephalopathy"
JAMg_model_65.2	3	Reactome: R-HSA-74259;Reactome: R-HSA-73621;Reactome: R-HSA-196807	"Purine catabolism";"Pyrimidine catabolism";"Nicotinate metabolism"
JAMg_model_692.1	10	Reactome: R-HSA-76042;Reactome: R-HSA-75953;Reactome: R-HSA-3214847;Reactome: R-HSA-73779;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756	"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Initiation";"HATs acetylate histones";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_16660.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_4350.3	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_11694.2	11	Reactome: R-HSA-5663213;Reactome: R-HSA-428890;Reactome: R-HSA-2029482;Reactome: R-HSA-525793;Reactome: R-HSA-5685938;Reactome: R-HSA-8940973;Reactome: R-HSA-8939236;Reactome: R-HSA-69231;KEGG: 04660+2.7.10.2;Reactome: R-HSA-5693565;Reactome: R-HSA-983231	"RHO GTPases Activate WASPs and WAVEs";"Role of ABL in ROBO-SLIT signaling";"Regulation of actin dynamics for phagocytic cup formation";"Myogenesis";"HDR through Single Strand Annealing (SSA)";"RUNX2 regulates osteoblast differentiation";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cyclin D associated events in G1";"T cell receptor signaling pathway";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Factors involved in megakaryocyte development and platelet production"
JAMg_model_4464.4	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394	"UCH proteinases";"DNA Damage Recognition in GG-NER"
JAMg_model_15505.2	2	Reactome: R-HSA-4086398;Reactome: R-HSA-418457	"Ca2+ pathway";"cGMP effects"
JAMg_model_20249.1	2	Reactome: R-HSA-72702;Reactome: R-HSA-72706	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_16822.1	34	Reactome: R-HSA-69202;Reactome: R-HSA-76042;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167162;Reactome: R-HSA-69231;Reactome: R-HSA-73762;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-5696395;Reactome: R-HSA-75953;Reactome: R-HSA-6782135;Reactome: R-HSA-73776;Reactome: R-HSA-73772;Reactome: R-HSA-69656;Reactome: R-HSA-73863;Reactome: R-HSA-6781823;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-8939236;Reactome: R-HSA-167172;Reactome: R-HSA-167246;Reactome: R-HSA-112382;Reactome: R-HSA-69273;Reactome: R-HSA-6781827;Reactome: R-HSA-6807505;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-427413;Reactome: R-HSA-167160	"Cyclin E associated events during G1/S transition";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Cyclin D associated events in G1";"RNA Polymerase I Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of Incision Complex in GG-NER";"RNA Polymerase II Transcription Initiation";"Dual incision in TC-NER";"RNA Polymerase II Promoter Escape";"RNA Polymerase I Promoter Escape";"Cyclin A:Cdk2-associated events at S phase entry";"RNA Polymerase I Transcription Termination";"Formation of TC-NER Pre-Incision Complex";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Transcription of the HIV genome";"Tat-mediated elongation of the HIV-1 transcript";"Formation of RNA Pol II elongation complex";"Cyclin A/B1/B2 associated events during G2/M transition";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA polymerase II transcribes snRNA genes";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection"
JAMg_model_5574.7	2	Reactome: R-HSA-5339700;Reactome: R-HSA-4641265	"TCF7L2 mutants don't bind CTBP";"Repression of WNT target genes"
JAMg_model_7186.1	18	KEGG: 00950+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00710+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00400+2.6.1.1;MetaCyc: PWY-6642;KEGG: 00960+2.6.1.1;MetaCyc: PWY-7117;MetaCyc: PWY-6638;MetaCyc: PWY-7115;KEGG: 00220+2.6.1.1;KEGG: 00360+2.6.1.1;MetaCyc: PWY-7383;MetaCyc: PWY-6643;KEGG: 00401+2.6.1.1;KEGG: 00270+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00250+2.6.1.1	"Isoquinoline alkaloid biosynthesis";"Tyrosine metabolism";"Carbon fixation in photosynthetic organisms";"Arginine and proline metabolism";"Phenylalanine, tyrosine and tryptophan biosynthesis";"(R)-cysteate degradation";"Tropane, piperidine and pyridine alkaloid biosynthesis";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Arginine biosynthesis";"Phenylalanine metabolism";"Anaerobic energy metabolism (invertebrates, cytosol)";"Coenzyme M biosynthesis II";"Novobiocin biosynthesis";"Cysteine and methionine metabolism";"Partial TCA cycle (obligate autotrophs)";"Alanine, aspartate and glutamate metabolism"
JAMg_model_14389.1	18	KEGG: 00280+1.8.1.4;KEGG: 00620+1.8.1.4;Reactome: R-HSA-6783984;KEGG: 00640+1.8.1.4;KEGG: 00310+1.8.1.4;KEGG: 00020+1.8.1.4;KEGG: 00010+1.8.1.4;Reactome: R-HSA-204174;MetaCyc: PWY-5084;MetaCyc: PWY-5046;Reactome: R-HSA-71064;Reactome: R-HSA-5362517;KEGG: 00380+1.8.1.4;Reactome: R-HSA-70895;Reactome: R-HSA-70268;Reactome: R-HSA-389661;KEGG: 00260+1.8.1.4;Reactome: R-HSA-71403	"Valine, leucine and isoleucine degradation";"Pyruvate metabolism";"Glycine degradation";"Propanoate metabolism";"Lysine degradation";"Citrate cycle (TCA cycle)";"Glycolysis / Gluconeogenesis";"Regulation of pyruvate dehydrogenase (PDH) complex";"2-oxoglutarate decarboxylation to succinyl-CoA";"2-oxoisovalerate decarboxylation to isobutanoyl-CoA";"Lysine catabolism";"Signaling by Retinoic Acid";"Tryptophan metabolism";"Branched-chain amino acid catabolism";"Pyruvate metabolism";"Glyoxylate metabolism and glycine degradation";"Glycine, serine and threonine metabolism";"Citric acid cycle (TCA cycle)"
JAMg_model_10201.5	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_7404.1	2	Reactome: R-HSA-203927;Reactome: R-HSA-426486	"MicroRNA (miRNA) biogenesis";"Small interfering RNA (siRNA) biogenesis"
JAMg_model_3666.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_4026.1	1	Reactome: R-HSA-5610787	"Hedgehog 'off' state"
JAMg_model_8478.4	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_3117.1	3	KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16	"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway"
JAMg_model_13056.1	13	Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_19131.2	14	Reactome: R-HSA-1483191;MetaCyc: PWY-8053;MetaCyc: PWY-7782;KEGG: 00600+3.1.3.4;Reactome: R-HSA-4419969;Reactome: R-HSA-75109;KEGG: 00565+3.1.3.4;MetaCyc: PWY-8051;KEGG: 00561+3.1.3.4;Reactome: R-HSA-1483213;KEGG: 00564+3.1.3.4;MetaCyc: PWY-8055;MetaCyc: PWY-6453;MetaCyc: PWY-8052	"Synthesis of PC";"Anandamide biosynthesis II";"Plasmalogen biosynthesis";"Sphingolipid metabolism";"Depolymerisation of the Nuclear Lamina";"Triglyceride biosynthesis";"Ether lipid metabolism";"Anandamide biosynthesis I";"Glycerolipid metabolism";"Synthesis of PE";"Glycerophospholipid metabolism";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis";"2-arachidonoylglycerol biosynthesis"
JAMg_model_2059.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_7280.1	2	KEGG: 00970+6.3.5.7;Reactome: R-HSA-2142753	"Aminoacyl-tRNA biosynthesis";"Arachidonic acid metabolism"
JAMg_model_17268.1	1	KEGG: 00970+6.3.5.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_7428.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_13056.3	13	Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957	"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_3507.2	4	Reactome: R-HSA-2132295;Reactome: R-HSA-6811436;Reactome: R-HSA-3371497;Reactome: R-HSA-6807878	"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-mediated anterograde transport"
JAMg_model_14769.1	2	Reactome: R-HSA-212676;Reactome: R-HSA-181429	"Dopamine Neurotransmitter Release Cycle";"Serotonin Neurotransmitter Release Cycle"
JAMg_model_2676.1	5	Reactome: R-HSA-3249367;Reactome: R-HSA-3270619;Reactome: R-HSA-1834941;Reactome: R-HSA-6798695;Reactome: R-HSA-3134975	"STAT6-mediated induction of chemokines";"IRF3-mediated induction of type I IFN";"STING mediated induction of host immune responses";"Neutrophil degranulation";"Regulation of innate immune responses to cytosolic DNA"
JAMg_model_19960.1	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_3732.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_15766.1	17	Reactome: R-HSA-174437;Reactome: R-HSA-5358606;Reactome: R-HSA-69183;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-174417;Reactome: R-HSA-6782210;Reactome: R-HSA-69166;Reactome: R-HSA-110314;Reactome: R-HSA-174414;Reactome: R-HSA-174411;Reactome: R-HSA-5651801;Reactome: R-HSA-5696400;Reactome: R-HSA-69091;Reactome: R-HSA-6782135	"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Processive synthesis on the lagging strand";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Telomere C-strand (Lagging Strand) Synthesis";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Removal of the Flap Intermediate";"Recognition of DNA damage by PCNA-containing replication complex";"Processive synthesis on the C-strand of the telomere";"Polymerase switching on the C-strand of the telomere";"PCNA-Dependent Long Patch Base Excision Repair";"Dual Incision in GG-NER";"Polymerase switching";"Dual incision in TC-NER"
JAMg_model_14998.2	3	Reactome: R-HSA-3299685;KEGG: 00240+3.6.1.17;KEGG: 00230+3.6.1.17	"Detoxification of Reactive Oxygen Species";"Pyrimidine metabolism";"Purine metabolism"
JAMg_model_2010.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_18297.1	7	MetaCyc: PWY-7238;KEGG: 00500+2.4.1.25;MetaCyc: PWY-6724;MetaCyc: PWY-6737;Reactome: R-HSA-6798695;MetaCyc: PWY-5941;Reactome: R-HSA-70221	"Sucrose biosynthesis II";"Starch and sucrose metabolism";"Starch degradation II";"Starch degradation V";"Neutrophil degranulation";"Glycogen degradation II";"Glycogen breakdown (glycogenolysis)"
JAMg_model_12692.1	1	Reactome: R-HSA-9022692	"Regulation of MECP2 expression and activity"
JAMg_model_15081.2	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_1273.1	2	Reactome: R-HSA-216083;Reactome: R-HSA-8951664	"Integrin cell surface interactions";"Neddylation"
JAMg_model_15634.1	3	Reactome: R-HSA-8854691;KEGG: 04660+2.7.10.2;Reactome: R-HSA-6785807	"Interleukin-20 family signaling";"T cell receptor signaling pathway";"Interleukin-4 and Interleukin-13 signaling"
JAMg_model_6815.1	6	Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-68877;Reactome: R-HSA-9648025	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation"
JAMg_model_16718.1	1	Reactome: R-HSA-2514859	"Inactivation, recovery and regulation of the phototransduction cascade"
JAMg_model_6415.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_4688.2	8	KEGG: 00240+2.7.4.9;MetaCyc: PWY-7184;MetaCyc: PWY-7197;Reactome: R-HSA-499943;MetaCyc: PWY-6545;MetaCyc: PWY-7210;MetaCyc: PWY-7187;MetaCyc: PWY-7198	"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV"
JAMg_model_4402.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_13140.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19425.1	1	Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_15764.1	37	Reactome: R-HSA-204005;Reactome: R-HSA-4551638;Reactome: R-HSA-168276;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-159227;Reactome: R-HSA-2132295;Reactome: R-HSA-1169408;Reactome: R-HSA-168333;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-983170;Reactome: R-HSA-9639288;Reactome: R-HSA-159236;Reactome: R-HSA-170822;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-68877;Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142	"COPII-mediated vesicle transport";"SUMOylation of chromatin organization proteins";"NS1 Mediated Effects on Host Pathways";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of the SLBP independent Mature mRNA";"MHC class II antigen presentation";"ISG15 antiviral mechanism";"NEP/NS2 Interacts with the Cellular Export Machinery";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Amino acids regulate mTORC1";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"Mitotic Prometaphase";"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins"
JAMg_model_9184.7	6	KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;MetaCyc: PWY-7817;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;KEGG: 00561+2.7.1.107	"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Glycerolipid metabolism"
JAMg_model_18434.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_7098.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_19638.1	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_8393.1	2	Reactome: R-HSA-2408508;Reactome: R-HSA-389661	"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Glyoxylate metabolism and glycine degradation"
JAMg_model_4874.5	1	Reactome: R-HSA-8873719	"RAB geranylgeranylation"
JAMg_model_18071.1	6	KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733;MetaCyc: PWY-7656;Reactome: R-HSA-9640463;MetaCyc: PWY-7782	"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis"
JAMg_model_5433.3	4	Reactome: R-HSA-1222556;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712	"ROS and RNS production in phagocytes";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport"
JAMg_model_18323.1	2	Reactome: R-HSA-5689896;Reactome: R-HSA-936440	"Ovarian tumor domain proteases";"Negative regulators of DDX58/IFIH1 signaling"
JAMg_model_9289.1	3	Reactome: R-HSA-110328;Reactome: R-HSA-110357;Reactome: R-HSA-110329	"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Displacement of DNA glycosylase by APEX1";"Cleavage of the damaged pyrimidine"
JAMg_model_9396.4	2	Reactome: R-HSA-202733;Reactome: R-HSA-416993	"Cell surface interactions at the vascular wall";"Trafficking of GluR2-containing AMPA receptors"
JAMg_model_13968.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_18681.7	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_15097.3	8	Reactome: R-HSA-983712;Reactome: R-HSA-182218;Reactome: R-HSA-167590;Reactome: R-HSA-1222556;Reactome: R-HSA-9636467;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-9639288	"Ion channel transport";"Nef Mediated CD8 Down-regulation";"Nef Mediated CD4 Down-regulation";"ROS and RNS production in phagocytes";"Blockage of phagosome acidification";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Amino acids regulate mTORC1"
JAMg_model_17666.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_15664.1	2	Reactome: R-HSA-70171;Reactome: R-HSA-70263	"Glycolysis";"Gluconeogenesis"
JAMg_model_20416.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_617.1	9	Reactome: R-HSA-110314;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-5696400;Reactome: R-HSA-6782210;Reactome: R-HSA-8951664;Reactome: R-HSA-5696394;Reactome: R-HSA-6781823;Reactome: R-HSA-5696395	"Recognition of DNA damage by PCNA-containing replication complex";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Dual Incision in GG-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Neddylation";"DNA Damage Recognition in GG-NER";"Formation of TC-NER Pre-Incision Complex";"Formation of Incision Complex in GG-NER"
JAMg_model_10182.4	5	Reactome: R-HSA-3371497;Reactome: R-HSA-6807878;Reactome: R-HSA-983231;Reactome: R-HSA-2132295;Reactome: R-HSA-6811436	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-mediated anterograde transport";"Factors involved in megakaryocyte development and platelet production";"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_6752.1	1	Reactome: R-HSA-606279	"Deposition of new CENPA-containing nucleosomes at the centromere"
JAMg_model_19795.2	4	KEGG: 00970+2.1.2.9;KEGG: 00670+2.1.2.9;Reactome: R-HSA-196757;KEGG: 00670+1.5.1.6	"Aminoacyl-tRNA biosynthesis";"One carbon pool by folate";"Metabolism of folate and pterines";"One carbon pool by folate"
JAMg_model_19224.1	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_10889.2	8	KEGG: 00052+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1	"Galactose metabolism";"Fructose and mannose metabolism";"Glycolysis / Gluconeogenesis";"Neomycin, kanamycin and gentamicin biosynthesis";"Streptomycin biosynthesis";"Starch and sucrose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_20334.10	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_5657.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_552.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_17870.1	56	Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425	"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1"
JAMg_model_13196.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_258.3	5	Reactome: R-HSA-5610785;Reactome: R-HSA-5610787;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780	"GLI3 is processed to GLI3R by the proteasome";"Hedgehog 'off' state";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome"
JAMg_model_3468.1	2	Reactome: R-HSA-3928665;Reactome: R-HSA-2682334	"EPH-ephrin mediated repulsion of cells";"EPH-Ephrin signaling"
JAMg_model_6326.1	14	Reactome: R-HSA-167238;Reactome: R-HSA-167243;Reactome: R-HSA-6796648;Reactome: R-HSA-167290;Reactome: R-HSA-167200;Reactome: R-HSA-167242;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-674695;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167246	"Pausing and recovery of Tat-mediated HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of HIV elongation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Abortive elongation of HIV-1 transcript in the absence of Tat";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript"
JAMg_model_13403.1	1	Reactome: R-HSA-425410	"Metal ion SLC transporters"
JAMg_model_10817.3	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_20941.1	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_14883.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_20972.1	3	Reactome: R-HSA-193648;Reactome: R-HSA-194840;Reactome: R-HSA-416482	"NRAGE signals death through JNK";"Rho GTPase cycle";"G alpha (12/13) signalling events"
JAMg_model_4185.2	2	Reactome: R-HSA-70350;Reactome: R-HSA-168928	"Fructose catabolism";"DDX58/IFIH1-mediated induction of interferon-alpha/beta"
JAMg_model_20205.4	2	KEGG: 00627+3.6.1.7;KEGG: 00620+3.6.1.7	"Aminobenzoate degradation";"Pyruvate metabolism"
JAMg_model_2692.1	15	MetaCyc: PWY-4983;MetaCyc: PWY-6824;KEGG: 00250+4.3.2.1;MetaCyc: PWY-5461;MetaCyc: PWY-4984;Reactome: R-HSA-70635;MetaCyc: PWY-5154;MetaCyc: PWY-5469;MetaCyc: PWY-5;MetaCyc: PWY-5466;MetaCyc: PWY-7445;MetaCyc: PWY-7214;KEGG: 00220+4.3.2.1;MetaCyc: PWY-7400;KEGG: 00940+1.11.1.7	"Nitric oxide biosynthesis II (mammals)";"Justicidin B biosynthesis";"Alanine, aspartate and glutamate metabolism";"Betanidin degradation";"Urea cycle";"Urea cycle";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"Sesamin biosynthesis";"Canavanine biosynthesis";"Matairesinol biosynthesis";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Arginine biosynthesis";"L-arginine biosynthesis IV (archaebacteria)";"Phenylpropanoid biosynthesis"
JAMg_model_8304.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8363.3	1	Reactome: R-HSA-72203	"Processing of Capped Intron-Containing Pre-mRNA"
JAMg_model_218.3	1	Reactome: R-HSA-73621	"Pyrimidine catabolism"
JAMg_model_17781.2	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_7864.1	3	Reactome: R-HSA-6811434;Reactome: R-HSA-983189;Reactome: R-HSA-390471	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_7863.2	13	MetaCyc: PWY-5537;Reactome: R-HSA-71403;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-7384;MetaCyc: PWY-6728;MetaCyc: PWY-5538;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690	"Pyruvate fermentation to acetate V";"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Reductive TCA cycle II";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Methylaspartate cycle";"Pyruvate fermentation to acetate VI";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)"
JAMg_model_10547.4	6	Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion"
JAMg_model_12356.1	1	Reactome: R-HSA-202733	"Cell surface interactions at the vascular wall"
JAMg_model_8992.2	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_10816.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_2584.1	2	Reactome: R-HSA-8949215;Reactome: R-HSA-8949664	"Mitochondrial calcium ion transport";"Processing of SMDT1"
JAMg_model_9820.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_18564.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_6913.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_12370.2	6	MetaCyc: PWY-5744;MetaCyc: PWY-5789;MetaCyc: PWY-5743;MetaCyc: PWY-6722;MetaCyc: PWY-4381;Reactome: R-HSA-196780	"Glyoxylate assimilation";"3-hydroxypropanoate/4-hydroxybutanate cycle";"3-hydroxypropanoate cycle";"Candicidin biosynthesis";"Fatty acid biosynthesis initiation (bacteria and plants)";"Biotin transport and metabolism"
JAMg_model_17195.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_15508.1	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_15204.1	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_16589.7	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_7304.1	1	Reactome: R-HSA-389977	"Post-chaperonin tubulin folding pathway"
JAMg_model_13230.3	2	MetaCyc: PWY-4261;KEGG: 00561+2.7.1.30	"Glycerol degradation I";"Glycerolipid metabolism"
JAMg_model_19431.3	13	Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957	"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_6635.1	1	Reactome: R-HSA-437239	"Recycling pathway of L1"
JAMg_model_1986.1	4	Reactome: R-HSA-975144;MetaCyc: PWY-7511;Reactome: R-HSA-937039;Reactome: R-HSA-9020702	"IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation";"Protein ubiquitination";"IRAK1 recruits IKK complex";"Interleukin-1 signaling"
JAMg_model_8453.2	3	Reactome: R-HSA-264876;Reactome: R-HSA-1445148;Reactome: R-HSA-5620916	"Insulin processing";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"VxPx cargo-targeting to cilium"
JAMg_model_9194.4	6	MetaCyc: PWY-7234;KEGG: 00230+3.5.4.10+2.1.2.3;Reactome: R-HSA-73817;KEGG: 00670+2.1.2.3;MetaCyc: PWY-6124;MetaCyc: PWY-6123	"Inosine-5'-phosphate biosynthesis III";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"One carbon pool by folate";"Inosine-5'-phosphate biosynthesis II";"Inosine-5'-phosphate biosynthesis I"
JAMg_model_11572.1	5	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport"
JAMg_model_9615.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_4976.4	7	MetaCyc: PWY-5469;MetaCyc: PWY-6824;MetaCyc: PWY-5466;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-7214;KEGG: 00940+1.11.1.7	"Sesamin biosynthesis";"Justicidin B biosynthesis";"Matairesinol biosynthesis";"Betanidin degradation";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Phenylpropanoid biosynthesis"
JAMg_model_18902.2	3	KEGG: 00680+3.1.2.12;Reactome: R-HSA-156590;MetaCyc: PWY-1801	"Methane metabolism";"Glutathione conjugation";"Formaldehyde oxidation II (glutathione-dependent)"
JAMg_model_3073.1	6	Reactome: R-HSA-159236;Reactome: R-HSA-975957;Reactome: R-HSA-73856;Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-9010553	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"Regulation of expression of SLITs and ROBOs"
JAMg_model_3677.2	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_9280.2	4	Reactome: R-HSA-983168;Reactome: R-HSA-8951664;Reactome: R-HSA-1234176;Reactome: R-HSA-3232142	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"SUMOylation of ubiquitinylation proteins"
JAMg_model_9515.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_21252.2	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_14443.2	2	Reactome: R-HSA-6798695;Reactome: R-HSA-8964038	"Neutrophil degranulation";"LDL clearance"
JAMg_model_4800.3	27	Reactome: R-HSA-170822;Reactome: R-HSA-168276;Reactome: R-HSA-168271;Reactome: R-HSA-159227;Reactome: R-HSA-6784531;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-3232142;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-4570464;Reactome: R-HSA-3371453;Reactome: R-HSA-1169408;Reactome: R-HSA-159230;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-168333	"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NS1 Mediated Effects on Host Pathways";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of the SLBP independent Mature mRNA";"tRNA processing in the nucleus";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of ubiquitinylation proteins";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"snRNP Assembly";"SUMOylation of RNA binding proteins";"Regulation of HSF1-mediated heat shock response";"ISG15 antiviral mechanism";"Transport of the SLBP Dependant Mature mRNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"NEP/NS2 Interacts with the Cellular Export Machinery"
JAMg_model_907.6	8	Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-3928665;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-196025	"Gap junction degradation";"Lysosome Vesicle Biogenesis";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"EPH-ephrin mediated repulsion of cells";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"Formation of annular gap junctions"
JAMg_model_6026.2	3	Reactome: R-HSA-202427;Reactome: R-HSA-6798695;Reactome: R-HSA-6807004	"Phosphorylation of CD3 and TCR zeta chains";"Neutrophil degranulation";"Negative regulation of MET activity"
JAMg_model_9878.1	12	Reactome: R-HSA-9010553;Reactome: R-HSA-450408;Reactome: R-HSA-1169408;Reactome: R-HSA-156827;Reactome: R-HSA-166208;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-429947;Reactome: R-HSA-72662;Reactome: R-HSA-72702;Reactome: R-HSA-72706	"Regulation of expression of SLITs and ROBOs";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"ISG15 antiviral mechanism";"L13a-mediated translational silencing of Ceruloplasmin expression";"mTORC1-mediated signalling";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Deadenylation of mRNA";"Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_13054.6	3	KEGG: 00270+5.3.1.23;MetaCyc: PWY-4361;MetaCyc: PWY-7174	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II"
JAMg_model_7052.3	1	Reactome: R-HSA-196108	"Pregnenolone biosynthesis"
JAMg_model_11737.4	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_18918.8	3	MetaCyc: PWY-5386;KEGG: 00620+4.4.1.5;Reactome: R-HSA-70268	"Methylglyoxal degradation I";"Pyruvate metabolism";"Pyruvate metabolism"
JAMg_model_7832.1	5	Reactome: R-HSA-73863;Reactome: R-HSA-73762;Reactome: R-HSA-73772;Reactome: R-HSA-427413;Reactome: R-HSA-5250924	"RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation";"RNA Polymerase I Promoter Escape";"NoRC negatively regulates rRNA expression";"B-WICH complex positively regulates rRNA expression"
JAMg_model_17907.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_20889.2	83	Reactome: R-HSA-391160;Reactome: R-HSA-388841;Reactome: R-HSA-5654726;Reactome: R-HSA-109704;Reactome: R-HSA-8853659;Reactome: R-HSA-1257604;Reactome: R-HSA-8865999;Reactome: R-HSA-2179392;Reactome: R-HSA-9027284;Reactome: R-HSA-179812;Reactome: R-HSA-5654695;Reactome: R-HSA-5654688;Reactome: R-HSA-1236382;Reactome: R-HSA-912526;Reactome: R-HSA-2871796;Reactome: R-HSA-8983432;Reactome: R-HSA-8856828;Reactome: R-HSA-354194;Reactome: R-HSA-167044;Reactome: R-HSA-512988;Reactome: R-HSA-9028731;Reactome: R-HSA-5654710;Reactome: R-HSA-5654712;Reactome: R-HSA-8851907;Reactome: R-HSA-5655253;Reactome: R-HSA-9634285;Reactome: R-HSA-9607240;Reactome: R-HSA-6811558;Reactome: R-HSA-2871809;Reactome: R-HSA-1963640;Reactome: R-HSA-5654733;Reactome: R-HSA-9664565;Reactome: R-HSA-9028335;Reactome: R-HSA-1250196;Reactome: R-HSA-182971;Reactome: R-HSA-5654689;Reactome: R-HSA-5655302;Reactome: R-HSA-1839117;Reactome: R-HSA-1963642;Reactome: R-HSA-74749;Reactome: R-HSA-983695;Reactome: R-HSA-8853334;Reactome: R-HSA-9034864;Reactome: R-HSA-8856825;Reactome: R-HSA-210993;Reactome: R-HSA-5654732;Reactome: R-HSA-8875656;Reactome: R-HSA-74751;Reactome: R-HSA-2424491;Reactome: R-HSA-5655291;Reactome: R-HSA-5654727;Reactome: R-HSA-8875360;Reactome: R-HSA-6807004;Reactome: R-HSA-375165;Reactome: R-HSA-1433557;Reactome: R-HSA-5654699;Reactome: R-HSA-8875555;Reactome: R-HSA-912631;Reactome: R-HSA-8853338;Reactome: R-HSA-389359;Reactome: R-HSA-180336;Reactome: R-HSA-2219530;Reactome: R-HSA-1250347;Reactome: R-HSA-186763;Reactome: R-HSA-5654700;Reactome: R-HSA-9026519;Reactome: R-HSA-9645135;Reactome: R-HSA-5673001;Reactome: R-HSA-5637810;Reactome: R-HSA-5654720;Reactome: R-HSA-5663213;Reactome: R-HSA-1295596;Reactome: R-HSA-2730905;Reactome: R-HSA-5654706;Reactome: R-HSA-180292;Reactome: R-HSA-112412;Reactome: R-HSA-5654719;Reactome: R-HSA-2428933;Reactome: R-HSA-8851805;Reactome: R-HSA-5654704;Reactome: R-HSA-5654693;Reactome: R-HSA-1433559;Reactome: R-HSA-2029482	"Signal regulatory protein family interactions";"Costimulation by the CD28 family";"Negative regulation of FGFR1 signaling";"PI3K Cascade";"RET signaling";"PIP3 activates AKT signaling";"MET activates PTPN11";"EGFR Transactivation by Gastrin";"Erythropoietin activates RAS";"GRB2 events in EGFR signaling";"PI-3K cascade:FGFR2";"SHC-mediated cascade:FGFR1";"Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants";"Interleukin receptor SHC signaling";"FCERI mediated MAPK activation";"Interleukin-15 signaling";"Clathrin-mediated endocytosis";"GRB2:SOS provides linkage to MAPK signaling for Integrins";"Signalling to RAS";"Interleukin-3, Interleukin-5 and GM-CSF signaling";"Activated NTRK2 signals through FRS2 and FRS3";"PI-3K cascade:FGFR3";"FRS-mediated FGFR4 signaling";"MET activates PI3K/AKT signaling";"Signaling by FGFR2 in disease";"Constitutive Signaling by Overexpressed ERBB2";"FLT3 Signaling";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"FCERI mediated Ca+2 mobilization";"GRB2 events in ERBB2 signaling";"Negative regulation of FGFR4 signaling";"Signaling by ERBB2 KD Mutants";"Activated NTRK2 signals through PI3K";"SHC1 events in ERBB2 signaling";"EGFR downregulation";"PI-3K cascade:FGFR1";"Signaling by FGFR1 in disease";"Signaling by cytosolic FGFR1 fusion mutants";"PI3K events in ERBB2 signaling";"Signal attenuation";"Antigen activates B Cell Receptor (BCR) leading to generation of second messengers";"Signaling by FGFR3 fusions in cancer";"Activated NTRK3 signals through RAS";"Cargo recognition for clathrin-mediated endocytosis";"Tie2 Signaling";"Negative regulation of FGFR3 signaling";"MET receptor recycling";"Insulin receptor signalling cascade";"DAP12 signaling";"Signaling by FGFR4 in disease";"Negative regulation of FGFR2 signaling";"InlB-mediated entry of Listeria monocytogenes into host cell";"Negative regulation of MET activity";"NCAM signaling for neurite out-growth";"Signaling by SCF-KIT";"SHC-mediated cascade:FGFR2";"MET activates RAP1 and RAC1";"Regulation of signaling by CBL";"Signaling by FGFR3 point mutants in cancer";"CD28 dependent Vav1 pathway";"SHC1 events in EGFR signaling";"Constitutive Signaling by Aberrant PI3K in Cancer";"SHC1 events in ERBB4 signaling";"Downstream signal transduction";"FRS-mediated FGFR2 signaling";"Activated NTRK2 signals through RAS";"STAT5 Activation";"RAF/MAP kinase cascade";"Constitutive Signaling by EGFRvIII";"PI-3K cascade:FGFR4";"RHO GTPases Activate WASPs and WAVEs";"Spry regulation of FGF signaling";"Role of LAT2/NTAL/LAB on calcium mobilization";"FRS-mediated FGFR3 signaling";"GAB1 signalosome";"SOS-mediated signalling";"SHC-mediated cascade:FGFR4";"SHC-related events triggered by IGF1R";"MET activates RAS signaling";"SHC-mediated cascade:FGFR3";"FRS-mediated FGFR1 signaling";"Regulation of KIT signaling";"Regulation of actin dynamics for phagocytic cup formation"
JAMg_model_13400.3	10	Reactome: R-HSA-202424;Reactome: R-HSA-5684264;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-2565942;Reactome: R-HSA-1169091;Reactome: R-HSA-8951664;Reactome: R-HSA-2871837;Reactome: R-HSA-5676590;Reactome: R-HSA-5607764	"Downstream TCR signaling";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Regulation of PLK1 Activity at G2/M Transition";"Activation of NF-kappaB in B cells";"Neddylation";"FCERI mediated NF-kB activation";"NIK-->noncanonical NF-kB signaling";"CLEC7A (Dectin-1) signaling"
JAMg_model_19254.1	10	Reactome: R-HSA-5609977;MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2;Reactome: R-HSA-70370;MetaCyc: PWY-6397;MetaCyc: PWY-3821;MetaCyc: PWY-6527;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6317;MetaCyc: PWY-7344	"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Galactose catabolism";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"D-galactose detoxification";"Stachyose degradation";"Galactose metabolism";"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis"
JAMg_model_20185.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_13857.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_6900.1	5	Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-2426168;Reactome: R-HSA-75105;Reactome: R-HSA-9029558	"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_4905.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_4567.1	7	KEGG: 00010+1.2.4.1;KEGG: 00620+1.2.4.1;Reactome: R-HSA-70268;KEGG: 00020+1.2.4.1;Reactome: R-HSA-389661;Reactome: R-HSA-5362517;Reactome: R-HSA-204174	"Glycolysis / Gluconeogenesis";"Pyruvate metabolism";"Pyruvate metabolism";"Citrate cycle (TCA cycle)";"Glyoxylate metabolism and glycine degradation";"Signaling by Retinoic Acid";"Regulation of pyruvate dehydrogenase (PDH) complex"
JAMg_model_9895.5	10	MetaCyc: PWY-6317;MetaCyc: PWY-7344;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6527;MetaCyc: PWY-3821;MetaCyc: PWY-6397;Reactome: R-HSA-70370;MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2;Reactome: R-HSA-5609977	"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis";"Galactose metabolism";"Stachyose degradation";"D-galactose detoxification";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Galactose catabolism";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)"
JAMg_model_7995.1	2	Reactome: R-HSA-1296052;Reactome: R-HSA-418457	"Ca2+ activated K+ channels";"cGMP effects"
JAMg_model_8225.1	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_21022.5	13	Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs"
JAMg_model_2446.6	5	Reactome: R-HSA-427389;Reactome: R-HSA-6804758;Reactome: R-HSA-3214815;Reactome: R-HSA-73762;Reactome: R-HSA-8943724	"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"Regulation of TP53 Activity through Acetylation";"HDACs deacetylate histones";"RNA Polymerase I Transcription Initiation";"Regulation of PTEN gene transcription"
JAMg_model_11950.1	15	Reactome: R-HSA-8853884;Reactome: R-HSA-2559585;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-8948700;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593;Reactome: R-HSA-9029569;Reactome: R-HSA-8936459	"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function"
JAMg_model_20813.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_17189.1	2	Reactome: R-HSA-418594;Reactome: R-HSA-6814122	"G alpha (i) signalling events";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_19133.1	13	MetaCyc: PWY-6728;MetaCyc: PWY-7384;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5538;KEGG: 00720+6.2.1.5;Reactome: R-HSA-71403;MetaCyc: PWY-5537;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-5913;MetaCyc: PWY-6969	"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate VI";"Carbon fixation pathways in prokaryotes";"Citric acid cycle (TCA cycle)";"Pyruvate fermentation to acetate V";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Reductive TCA cycle II";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_409.1	14	Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-5687128;Reactome: R-HSA-68877;Reactome: R-HSA-168333;Reactome: R-HSA-2467813;Reactome: R-HSA-9634638;Reactome: R-HSA-3769402;Reactome: R-HSA-69273;Reactome: R-HSA-450520;Reactome: R-HSA-9648025;Reactome: R-HSA-2173788;Reactome: R-HSA-165054;Reactome: R-HSA-2500257	"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"MAPK6/MAPK4 signaling";"Mitotic Prometaphase";"NEP/NS2 Interacts with the Cellular Export Machinery";"Separation of Sister Chromatids";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"Deactivation of the beta-catenin transactivating complex";"Cyclin A/B1/B2 associated events during G2/M transition";"HuR (ELAVL1) binds and stabilizes mRNA";"EML4 and NUDC in mitotic spindle formation";"Downregulation of TGF-beta receptor signaling";"Rev-mediated nuclear export of HIV RNA";"Resolution of Sister Chromatid Cohesion"
JAMg_model_10788.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_2640.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_17226.1	2	Reactome: R-HSA-176187;Reactome: R-HSA-68962	"Activation of ATR in response to replication stress";"Activation of the pre-replicative complex"
JAMg_model_2270.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_6333.2	10	MetaCyc: PWY-5892;MetaCyc: PWY-5844;MetaCyc: PWY-5895;MetaCyc: PWY-7996;Reactome: R-HSA-2142789;MetaCyc: PWY-5891;KEGG: 00130+2.1.1.163;MetaCyc: PWY-5890;MetaCyc: PWY-5849;MetaCyc: PWY-5839	"Menaquinol-12 biosynthesis";"Menaquinol-9 biosynthesis";"Menaquinol-13 biosynthesis";"Menaquinol-4 biosynthesis I";"Ubiquinol biosynthesis";"Menaquinol-11 biosynthesis";"Ubiquinone and other terpenoid-quinone biosynthesis";"Menaquinol-10 biosynthesis";"Menaquinol-6 biosynthesis";"Menaquinol-7 biosynthesis"
JAMg_model_15872.1	5	Reactome: R-HSA-8951664;Reactome: R-HSA-6782210;Reactome: R-HSA-6781823;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827	"Neddylation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of TC-NER Pre-Incision Complex";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)"
JAMg_model_3613.1	15	Reactome: R-HSA-8853884;Reactome: R-HSA-2559585;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-8948700;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-2559580;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8934593;Reactome: R-HSA-1912408;Reactome: R-HSA-4086398;Reactome: R-HSA-8936459;Reactome: R-HSA-9029569	"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Oxidative Stress Induced Senescence";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Regulation of RUNX1 Expression and Activity";"Pre-NOTCH Transcription and Translation";"Ca2+ pathway";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux"
JAMg_model_14756.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_20791.2	14	Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167246;Reactome: R-HSA-75955;Reactome: R-HSA-674695;Reactome: R-HSA-167242;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-167290;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167243;Reactome: R-HSA-167200	"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events";"Abortive elongation of HIV-1 transcript in the absence of Tat";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"Pausing and recovery of HIV elongation";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Tat-mediated HIV elongation arrest and recovery";"Formation of HIV-1 elongation complex containing HIV-1 Tat"
JAMg_model_1234.1	2	Reactome: R-HSA-6783310;Reactome: R-HSA-6796648	"Fanconi Anemia Pathway";"TP53 Regulates Transcription of DNA Repair Genes"
JAMg_model_15441.2	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_18100.2	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_19033.1	11	Reactome: R-HSA-5620912;Reactome: R-HSA-6811436;Reactome: R-HSA-380259;Reactome: R-HSA-2132295;Reactome: R-HSA-380320;Reactome: R-HSA-8854518;Reactome: R-HSA-6807878;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-2565942;Reactome: R-HSA-3371497	"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic";"Loss of Nlp from mitotic centrosomes";"MHC class II antigen presentation";"Recruitment of NuMA to mitotic centrosomes";"AURKA Activation by TPX2";"COPI-mediated anterograde transport";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)"
JAMg_model_11786.2	2	Reactome: R-HSA-975957;Reactome: R-HSA-9010553	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs"
JAMg_model_6261.1	1	Reactome: R-HSA-2467813	"Separation of Sister Chromatids"
JAMg_model_15700.1	2	Reactome: R-HSA-975957;Reactome: R-HSA-9010553	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs"
JAMg_model_6507.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_19670.1	5	Reactome: R-HSA-68867;Reactome: R-HSA-69205;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68827	"Assembly of the pre-replicative complex";"G1/S-Specific Transcription";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"CDT1 association with the CDC6:ORC:origin complex"
JAMg_model_18245.1	5	Reactome: R-HSA-1445148;Reactome: R-HSA-6798695;Reactome: R-HSA-8873719;Reactome: R-HSA-1660499;Reactome: R-HSA-8876198	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Neutrophil degranulation";"RAB geranylgeranylation";"Synthesis of PIPs at the plasma membrane";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_3303.4	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_17664.2	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_2132.2	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_1493.1	5	Reactome: R-HSA-5693607;Reactome: R-HSA-69473;Reactome: R-HSA-5689901;Reactome: R-HSA-5693571;Reactome: R-HSA-5693565	"Processing of DNA double-strand break ends";"G2/M DNA damage checkpoint";"Metalloprotease DUBs";"Nonhomologous End-Joining (NHEJ)";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_21315.6	15	MetaCyc: PWY-2221;MetaCyc: PWY-6886;MetaCyc: PWY-8004;MetaCyc: PWY-5723;MetaCyc: PWY-6901;KEGG: 00010+2.7.1.40;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-7383;KEGG: 00230+2.7.1.40;MetaCyc: PWY-7218;KEGG: 00620+2.7.1.40;MetaCyc: PWY-6142;Reactome: R-HSA-70171;MetaCyc: PWY-7003	"Entner-Doudoroff pathway III (semi-phosphorylative)";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Rubisco shunt";"Superpathway of glucose and xylose degradation";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Purine metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Pyruvate metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Glycerol degradation to butanol"
JAMg_model_17801.1	1	Reactome: R-HSA-373753	"Nephrin family interactions"
JAMg_model_6544.1	2	Reactome: R-HSA-5693568;Reactome: R-HSA-6783310	"Resolution of D-loop Structures through Holliday Junction Intermediates";"Fanconi Anemia Pathway"
JAMg_model_10992.1	2	Reactome: R-HSA-3299685;MetaCyc: PWY-6854	"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)"
JAMg_model_10031.1	5	KEGG: 00565+2.5.1.26;MetaCyc: PWY-7782;Reactome: R-HSA-9033500;Reactome: R-HSA-9033241;Reactome: R-HSA-75896	"Ether lipid metabolism";"Plasmalogen biosynthesis";"TYSND1 cleaves peroxisomal proteins";"Peroxisomal protein import";"Plasmalogen biosynthesis"
JAMg_model_15049.2	5	Reactome: R-HSA-5694530;Reactome: R-HSA-983170;Reactome: R-HSA-204005;Reactome: R-HSA-2132295;Reactome: R-HSA-1655829	"Cargo concentration in the ER";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"COPII-mediated vesicle transport";"MHC class II antigen presentation";"Regulation of cholesterol biosynthesis by SREBP (SREBF)"
JAMg_model_18133.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_1988.4	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_13130.1	21	KEGG: 00240+2.7.4.6;KEGG: 00730+2.7.4.3;MetaCyc: PWY-7210;MetaCyc: PWY-7220;MetaCyc: PWY-7198;KEGG: 00230+2.7.4.6+2.7.4.3;MetaCyc: PWY-7226;MetaCyc: PWY-7197;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7184;MetaCyc: PWY-7219;MetaCyc: PWY-7205;Reactome: R-HSA-499943;MetaCyc: PWY-6545;MetaCyc: PWY-7187;KEGG: 00230+2.7.4.3;MetaCyc: PWY-7221;MetaCyc: PWY-7227;MetaCyc: PWY-7176;MetaCyc: PWY-7224;MetaCyc: PWY-7222	"Pyrimidine metabolism";"Thiamine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Purine metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Adenosine ribonucleotides de novo biosynthesis";"CMP phosphorylation";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis";"UTP and CTP de novo biosynthesis";"Purine deoxyribonucleosides salvage";"Guanosine deoxyribonucleotides de novo biosynthesis II"
JAMg_model_14353.1	2	Reactome: R-HSA-382556;Reactome: R-HSA-5678895	"ABC-family proteins mediated transport";"Defective CFTR causes cystic fibrosis"
JAMg_model_775.1	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_20539.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_9228.2	16	Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-975956;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Peptide chain elongation";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis"
JAMg_model_799.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_12738.1	7	KEGG: 00562+3.1.3.25;Reactome: R-HSA-1855183;KEGG: 04070+3.1.3.25;MetaCyc: PWY-2301;KEGG: 00521+3.1.3.25;MetaCyc: PWY-6363;MetaCyc: PWY-4702	"Inositol phosphate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol";"Phosphatidylinositol signaling system";"Myo-inositol biosynthesis";"Streptomycin biosynthesis";"D-myo-inositol (1,4,5)-trisphosphate degradation";"Phytate degradation I"
JAMg_model_20190.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_7796.1	15	Reactome: R-HSA-8853884;Reactome: R-HSA-2559585;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-8948700;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593;Reactome: R-HSA-9029569;Reactome: R-HSA-8936459	"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function"
JAMg_model_7052.6	1	Reactome: R-HSA-196108	"Pregnenolone biosynthesis"
JAMg_model_13501.1	6	Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72706	"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_18477.1	2	Reactome: R-HSA-5357905;Reactome: R-HSA-5357956	"Regulation of TNFR1 signaling";"TNFR1-induced NFkappaB signaling pathway"
JAMg_model_3237.5	13	Reactome: R-HSA-167590;Reactome: R-HSA-2132295;Reactome: R-HSA-416993;Reactome: R-HSA-8866427;Reactome: R-HSA-182218;Reactome: R-HSA-3928665;Reactome: R-HSA-8964038;Reactome: R-HSA-5140745;Reactome: R-HSA-177504;Reactome: R-HSA-5099900;Reactome: R-HSA-437239;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828	"Nef Mediated CD4 Down-regulation";"MHC class II antigen presentation";"Trafficking of GluR2-containing AMPA receptors";"VLDLR internalisation and degradation";"Nef Mediated CD8 Down-regulation";"EPH-ephrin mediated repulsion of cells";"LDL clearance";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Retrograde neurotrophin signalling";"WNT5A-dependent internalization of FZD4";"Recycling pathway of L1";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis"
JAMg_model_8994.1	4	MetaCyc: PWY-5030;Reactome: R-HSA-70921;MetaCyc: PWY-5028;KEGG: 00340+4.2.1.49	"L-histidine degradation III";"Histidine catabolism";"L-histidine degradation II";"Histidine metabolism"
JAMg_model_11650.3	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_3313.1	2	Reactome: R-HSA-430039;Reactome: R-HSA-72163	"mRNA decay by 5' to 3' exoribonuclease";"mRNA Splicing - Major Pathway"
JAMg_model_2584.2	2	Reactome: R-HSA-8949215;Reactome: R-HSA-8949664	"Mitochondrial calcium ion transport";"Processing of SMDT1"
JAMg_model_9797.4	1	Reactome: R-HSA-191273	"Cholesterol biosynthesis"
JAMg_model_17419.2	12	Reactome: R-HSA-2565942;Reactome: R-HSA-3371497;Reactome: R-HSA-380284;Reactome: R-HSA-381038;Reactome: R-HSA-380270;Reactome: R-HSA-8854518;Reactome: R-HSA-6807878;Reactome: R-HSA-5620912;Reactome: R-HSA-6811436;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-2132295	"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Loss of proteins required for interphase microtubule organization from the centrosome";"XBP1(S) activates chaperone genes";"Recruitment of mitotic centrosome proteins and complexes";"AURKA Activation by TPX2";"COPI-mediated anterograde transport";"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"MHC class II antigen presentation"
JAMg_model_13412.1	4	KEGG: 00480+1.1.1.49;KEGG: 00030+1.1.1.49;MetaCyc: PWY-8004;MetaCyc: PWY-7268	"Glutathione metabolism";"Pentose phosphate pathway";"Entner-Doudoroff pathway I";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)"
JAMg_model_16589.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_20787.14	32	Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-77075;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-72203;Reactome: R-HSA-76042;Reactome: R-HSA-6803529;Reactome: R-HSA-9018519;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-75955;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-73776	"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing";"Estrogen-dependent gene expression";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Elongation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Promoter Escape"
JAMg_model_20707.1	7	KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1	"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Thermogenesis";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection"
JAMg_model_9985.3	4	Reactome: R-HSA-2467813;Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Resolution of Sister Chromatid Cohesion"
JAMg_model_13127.1	9	Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-76042	"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance"
JAMg_model_14286.1	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_20984.4	4	Reactome: R-HSA-112308;Reactome: R-HSA-5576892;Reactome: R-HSA-419037;Reactome: R-HSA-5576893	"Presynaptic depolarization and calcium channel opening";"Phase 0 - rapid depolarisation";"NCAM1 interactions";"Phase 2 - plateau phase"
JAMg_model_17785.7	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_9674.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_19359.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_2822.1	1	Reactome: R-HSA-1362409	"Mitochondrial iron-sulfur cluster biogenesis"
JAMg_model_10246.4	13	MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;MetaCyc: PWY-6902;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-1660662;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2022857;Reactome: R-HSA-2024101	"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Chitin degradation II (Vibrio)";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Hyaluronan uptake and degradation";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation";"Anhydromuropeptides recycling II";"Glycosphingolipid metabolism";"Various types of N-glycan biosynthesis";"Keratan sulfate degradation";"CS/DS degradation"
JAMg_model_18024.3	2	Reactome: R-HSA-380270;Reactome: R-HSA-380320	"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_16743.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_19672.1	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_16488.3	7	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection"
JAMg_model_16232.2	4	Reactome: R-HSA-156581;MetaCyc: PWY-5912;MetaCyc: PWY-5041;KEGG: 00270+2.5.1.6	"Methylation";"2'-deoxymugineic acid phytosiderophore biosynthesis";"S-adenosyl-L-methionine cycle II";"Cysteine and methionine metabolism"
JAMg_model_10124.1	6	KEGG: 00290+4.2.1.33;Reactome: R-HSA-71403;KEGG: 00020+4.2.1.3;KEGG: 00630+4.2.1.3;Reactome: R-HSA-1268020;KEGG: 00720+4.2.1.3	"Valine, leucine and isoleucine biosynthesis";"Citric acid cycle (TCA cycle)";"Citrate cycle (TCA cycle)";"Glyoxylate and dicarboxylate metabolism";"Mitochondrial protein import";"Carbon fixation pathways in prokaryotes"
JAMg_model_8013.2	6	Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-68877;Reactome: R-HSA-9648025	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation"
JAMg_model_3499.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_18574.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6784531	"Major pathway of rRNA processing in the nucleolus and cytosol";"tRNA processing in the nucleus"
JAMg_model_16943.1	4	Reactome: R-HSA-8950505;Reactome: R-HSA-1268020;Reactome: R-HSA-3371453;Reactome: R-HSA-8949613	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Mitochondrial protein import";"Regulation of HSF1-mediated heat shock response";"Cristae formation"
JAMg_model_15626.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_12757.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_9142.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_7078.1	14	Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-2022377;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Viral mRNA Translation";"Peptide chain elongation";"Metabolism of Angiotensinogen to Angiotensins";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_8298.11	4	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-1912420	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Pre-NOTCH Processing in Golgi"
JAMg_model_6221.2	18	Reactome: R-HSA-975956;Reactome: R-HSA-6790901;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-166208;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"rRNA modification in the nucleus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"mTORC1-mediated signalling";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_11562.2	2	Reactome: R-HSA-426486;Reactome: R-HSA-203927	"Small interfering RNA (siRNA) biogenesis";"MicroRNA (miRNA) biogenesis"
JAMg_model_3095.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_8547.1	5	Reactome: R-HSA-450604;Reactome: R-HSA-430039;Reactome: R-HSA-450385;Reactome: R-HSA-380994;Reactome: R-HSA-450513	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 5' to 3' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA"
JAMg_model_4609.1	15	MetaCyc: PWY-2221;MetaCyc: PWY-6886;MetaCyc: PWY-8004;MetaCyc: PWY-5723;MetaCyc: PWY-1042;KEGG: 00010+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-5484;MetaCyc: PWY-7383;KEGG: 00230+2.7.1.40;MetaCyc: PWY-7218;KEGG: 00620+2.7.1.40;MetaCyc: PWY-6142;Reactome: R-HSA-70171;MetaCyc: PWY-7003	"Entner-Doudoroff pathway III (semi-phosphorylative)";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Rubisco shunt";"Glycolysis IV (plant cytosol)";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Purine metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Pyruvate metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Glycerol degradation to butanol"
JAMg_model_359.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_14404.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5023.1	57	Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785	"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome"
JAMg_model_10017.3	1	Reactome: R-HSA-8874211	"CREB3 factors activate genes"
JAMg_model_4219.3	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_8784.1	3	Reactome: R-HSA-164843;Reactome: R-HSA-3108214;Reactome: R-HSA-5693571	"2-LTR circle formation";"SUMOylation of DNA damage response and repair proteins";"Nonhomologous End-Joining (NHEJ)"
JAMg_model_17201.1	3	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels"
JAMg_model_18327.2	2	Reactome: R-HSA-390522;Reactome: R-HSA-445355	"Striated Muscle Contraction";"Smooth Muscle Contraction"
JAMg_model_12913.1	5	Reactome: R-HSA-5218920;Reactome: R-HSA-1257604;Reactome: R-HSA-6804757;Reactome: R-HSA-5674400;Reactome: R-HSA-389357	"VEGFR2 mediated vascular permeability";"PIP3 activates AKT signaling";"Regulation of TP53 Degradation";"Constitutive Signaling by AKT1 E17K in Cancer";"CD28 dependent PI3K/Akt signaling"
JAMg_model_12720.1	2	Reactome: R-HSA-5628897;Reactome: R-HSA-611105	"TP53 Regulates Metabolic Genes";"Respiratory electron transport"
JAMg_model_11644.2	16	Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553	"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Peptide chain elongation";"Viral mRNA Translation";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs"
JAMg_model_17061.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_822.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_5802.1	5	Reactome: R-HSA-9029558;Reactome: R-HSA-2426168;Reactome: R-HSA-75105;Reactome: R-HSA-163765;Reactome: R-HSA-199220	"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism"
JAMg_model_5220.2	1	Reactome: R-HSA-5223345	"Miscellaneous transport and binding events"
JAMg_model_731.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_2885.3	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_8875.3	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_340.3	1	Reactome: R-HSA-427652	"Sodium-coupled phosphate cotransporters"
JAMg_model_16752.1	2	Reactome: R-HSA-3108214;Reactome: R-HSA-5685938	"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)"
JAMg_model_17664.3	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_10636.1	1	Reactome: R-HSA-977606	"Regulation of Complement cascade"
JAMg_model_18315.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_14287.2	11	Reactome: R-HSA-69166;Reactome: R-HSA-5693568;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-6804756;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-174437;Reactome: R-HSA-69473;Reactome: R-HSA-5693616	"Removal of the Flap Intermediate";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Regulation of TP53 Activity through Phosphorylation";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"Removal of the Flap Intermediate from the C-strand";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange"
JAMg_model_18437.1	1	Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_14657.4	4	Reactome: R-HSA-3371497;Reactome: R-HSA-8939211;Reactome: R-HSA-3371568;Reactome: R-HSA-9018519	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"ESR-mediated signaling";"Attenuation phase";"Estrogen-dependent gene expression"
JAMg_model_2796.1	1	Reactome: R-HSA-5666185	"RHO GTPases Activate Rhotekin and Rhophilins"
JAMg_model_8550.4	14	MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7725;MetaCyc: PWY-5080;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-5972;MetaCyc: PWY-7035;Reactome: R-HSA-75876;MetaCyc: PWY-8041;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036;KEGG: 00062+2.3.1.199	"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Fatty acid elongation"
JAMg_model_12040.1	1	KEGG: 00970+6.1.1.2	"Aminoacyl-tRNA biosynthesis"
JAMg_model_8706.1	1	Reactome: R-HSA-6793080	"rRNA modification in the mitochondrion"
JAMg_model_8833.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_7014.4	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_2053.2	2	Reactome: R-HSA-71384;KEGG: 00030+1.1.1.47	"Ethanol oxidation";"Pentose phosphate pathway"
JAMg_model_20334.6	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_10230.1	2	Reactome: R-HSA-418890;Reactome: R-HSA-3295583	"Role of second messengers in netrin-1 signaling";"TRP channels"
JAMg_model_11022.1	1	Reactome: R-HSA-3000171	"Non-integrin membrane-ECM interactions"
JAMg_model_2148.1	2	Reactome: R-HSA-418555;Reactome: R-HSA-444821	"G alpha (s) signalling events";"Relaxin receptors"
JAMg_model_7890.1	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_8268.2	2	Reactome: R-HSA-429947;Reactome: R-HSA-6804115	"Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain"
JAMg_model_9600.2	2	Reactome: R-HSA-6798695;Reactome: R-HSA-6811434	"Neutrophil degranulation";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_10003.2	9	KEGG: 04070+3.1.4.11;Reactome: R-HSA-112043;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;KEGG: 00562+3.1.4.11;MetaCyc: PWY-7039;MetaCyc: PWY-6351;MetaCyc: PWY-8052;Reactome: R-HSA-416476	"Phosphatidylinositol signaling system";"PLC beta mediated events";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"Inositol phosphate metabolism";"Phosphatidate metabolism, as a signaling molecule";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"G alpha (q) signalling events"
JAMg_model_7900.3	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_10797.2	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_359.7	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_14381.1	10	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-194840;KEGG: 04926+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-1839117;Reactome: R-HSA-5655302;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Rho GTPase cycle";"Relaxin signaling pathway";"Human cytomegalovirus infection";"Signaling by cytosolic FGFR1 fusion mutants";"Signaling by FGFR1 in disease";"Human immunodeficiency virus 1 infection"
JAMg_model_12716.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_12229.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_21247.1	4	Reactome: R-HSA-6798695;Reactome: R-HSA-2132295;Reactome: R-HSA-5694530;Reactome: R-HSA-204005	"Neutrophil degranulation";"MHC class II antigen presentation";"Cargo concentration in the ER";"COPII-mediated vesicle transport"
JAMg_model_5030.4	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_15390.2	33	Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-159227;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168276;Reactome: R-HSA-4551638;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-68877;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-170822;Reactome: R-HSA-159236;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4085377	"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"Transport of the SLBP independent Mature mRNA";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"NS1 Mediated Effects on Host Pathways";"SUMOylation of chromatin organization proteins";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Mitotic Prometaphase";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins"
JAMg_model_2603.1	10	MetaCyc: PWY-7385;KEGG: 00052+2.7.1.11;KEGG: 00010+2.7.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-1861;KEGG: 00680+2.7.1.11;KEGG: 00051+2.7.1.11;Reactome: R-HSA-70171;KEGG: 00030+2.7.1.11	"1,3-propanediol biosynthesis (engineered)";"Galactose metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Methane metabolism";"Fructose and mannose metabolism";"Glycolysis";"Pentose phosphate pathway"
JAMg_model_13295.1	5	Reactome: R-HSA-5687128;KEGG: 05235+3.1.3.16;Reactome: R-HSA-176407;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"MAPK6/MAPK4 signaling";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_5978.2	1	Reactome: R-HSA-8856828	"Clathrin-mediated endocytosis"
JAMg_model_4960.1	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_2046.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-5576893	"Phase 0 - rapid depolarisation";"Phase 2 - plateau phase"
JAMg_model_2166.1	2	Reactome: R-HSA-383280;Reactome: R-HSA-983168	"Nuclear Receptor transcription pathway";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_16501.1	1	Reactome: R-HSA-1614517	"Sulfide oxidation to sulfate"
JAMg_model_18910.6	1	Reactome: R-HSA-2142789	"Ubiquinol biosynthesis"
JAMg_model_2711.1	26	Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-983189;Reactome: R-HSA-389960;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-389977;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467	"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Kinesins";"Formation of tubulin folding intermediates by CCT/TriC";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Post-chaperonin tubulin folding pathway";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs"
JAMg_model_21283.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_9226.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_7144.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_10218.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_7362.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_3237.4	13	Reactome: R-HSA-416993;Reactome: R-HSA-8866427;Reactome: R-HSA-2132295;Reactome: R-HSA-167590;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-177504;Reactome: R-HSA-8964038;Reactome: R-HSA-3928665;Reactome: R-HSA-182218;Reactome: R-HSA-8856825;Reactome: R-HSA-437239;Reactome: R-HSA-8856828	"Trafficking of GluR2-containing AMPA receptors";"VLDLR internalisation and degradation";"MHC class II antigen presentation";"Nef Mediated CD4 Down-regulation";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Retrograde neurotrophin signalling";"LDL clearance";"EPH-ephrin mediated repulsion of cells";"Nef Mediated CD8 Down-regulation";"Cargo recognition for clathrin-mediated endocytosis";"Recycling pathway of L1";"Clathrin-mediated endocytosis"
JAMg_model_6886.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_8112.2	2	KEGG: 00450+6.1.1.10;KEGG: 00970+6.1.1.10	"Selenocompound metabolism";"Aminoacyl-tRNA biosynthesis"
JAMg_model_9797.5	14	Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-191273;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Cholesterol biosynthesis";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_1758.2	6	Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-5620922;Reactome: R-HSA-6814122;Reactome: R-HSA-389957;Reactome: R-HSA-390471	"Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_13054.9	3	KEGG: 00270+5.3.1.23;MetaCyc: PWY-4361;MetaCyc: PWY-7174	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II"
JAMg_model_14533.1	13	MetaCyc: PWY-7254;KEGG: 00020+4.2.1.2;MetaCyc: PWY-5913;MetaCyc: PWY-6969;MetaCyc: PWY-8086;MetaCyc: PWY-5392;KEGG: 00720+4.2.1.2;Reactome: R-HSA-71403;MetaCyc: PWY-5690;KEGG: 00620+4.2.1.2;MetaCyc: PWY-6728;MetaCyc: PWY-7384;MetaCyc: PWY-561	"TCA cycle VII (acetate-producers)";"Citrate cycle (TCA cycle)";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Reductive TCA cycle II";"Carbon fixation pathways in prokaryotes";"Citric acid cycle (TCA cycle)";"TCA cycle II (plants and fungi)";"Pyruvate metabolism";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Superpathway of glyoxylate cycle and fatty acid degradation"
JAMg_model_4424.1	2	Reactome: R-HSA-1660662;Reactome: R-HSA-6798695	"Glycosphingolipid metabolism";"Neutrophil degranulation"
JAMg_model_20988.4	1	Reactome: R-HSA-9633012	"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_14802.1	1	Reactome: R-HSA-9609523	"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_20988.1	1	Reactome: R-HSA-9633012	"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_12379.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_13483.1	16	Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_14445.1	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_4541.13	7	Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_9186.4	6	MetaCyc: PWY-7817;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism"
JAMg_model_9782.1	1	Reactome: R-HSA-6802952	"Signaling by BRAF and RAF fusions"
JAMg_model_8920.1	7	Reactome: R-HSA-351202;KEGG: 00270+2.5.1.22;KEGG: 00330+2.5.1.22;KEGG: 00480+2.5.1.16;KEGG: 00480+2.5.1.22;KEGG: 00270+2.5.1.16;KEGG: 00330+2.5.1.16	"Metabolism of polyamines";"Cysteine and methionine metabolism";"Arginine and proline metabolism";"Glutathione metabolism";"Glutathione metabolism";"Cysteine and methionine metabolism";"Arginine and proline metabolism"
JAMg_model_12236.1	3	Reactome: R-HSA-4420097;Reactome: R-HSA-391160;KEGG: 04660+2.7.10.2	"VEGFA-VEGFR2 Pathway";"Signal regulatory protein family interactions";"T cell receptor signaling pathway"
JAMg_model_12772.4	3	Reactome: R-HSA-212436;Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"Generic Transcription Pathway";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_13165.1	13	Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_19648.2	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_10598.6	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5689880	"UCH proteinases";"Ub-specific processing proteases"
JAMg_model_7046.2	4	KEGG: 00230+2.7.4.3;Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219	"Purine metabolism";"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis"
JAMg_model_17704.1	6	Reactome: R-HSA-6798695;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"Neutrophil degranulation";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_15725.1	1	KEGG: 00450+1.8.1.9	"Selenocompound metabolism"
JAMg_model_8698.6	22	MetaCyc: PWY-5080;MetaCyc: PWY-7049;MetaCyc: PWY-7602;MetaCyc: PWY-6433;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7053;MetaCyc: PWY-5353;MetaCyc: PWY-7606;MetaCyc: PWY-6958;MetaCyc: PWY-7035;MetaCyc: PWY-7726;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7727;MetaCyc: PWY-7592;MetaCyc: PWY-7725;MetaCyc: PWY-7601;MetaCyc: PWY-7724;Reactome: R-HSA-75876;MetaCyc: PWY-7619;MetaCyc: PWY-7728;MetaCyc: PWY-8041	"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Fatty acid elongation";"Docosahexaenoate biosynthesis I (lower eukaryotes)";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"(9Z)-tricosene biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Synthesis of very long-chain fatty acyl-CoAs";"Juniperonate biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Ultra-long-chain fatty acid biosynthesis"
JAMg_model_9280.1	4	Reactome: R-HSA-3232142;Reactome: R-HSA-1234176;Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"SUMOylation of ubiquitinylation proteins";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_2408.2	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_17134.1	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_19198.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-8869496	"rRNA modification in the nucleus and cytosol";"TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation"
JAMg_model_11705.1	6	MetaCyc: PWY-7234;KEGG: 00230+4.1.1.21;Reactome: R-HSA-73817;MetaCyc: PWY-6124;KEGG: 00230+6.3.2.6;MetaCyc: PWY-6123	"Inosine-5'-phosphate biosynthesis III";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"Inosine-5'-phosphate biosynthesis II";"Purine metabolism";"Inosine-5'-phosphate biosynthesis I"
JAMg_model_21145.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_20077.1	5	KEGG: 00534+2.4.1.224+2.4.1.225;Reactome: R-HSA-2022928;MetaCyc: PWY-6558;Reactome: R-HSA-3656237;Reactome: R-HSA-3656253	"Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"HS-GAG biosynthesis";"Heparan sulfate biosynthesis (late stages)";"Defective EXT2 causes exostoses 2";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS"
JAMg_model_16195.3	56	Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870	"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins"
JAMg_model_11316.1	26	Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-6811434;Reactome: R-HSA-389977;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-983189;Reactome: R-HSA-389960;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690	"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-dependent Golgi-to-ER retrograde traffic";"Post-chaperonin tubulin folding pathway";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Kinesins";"Formation of tubulin folding intermediates by CCT/TriC";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events"
JAMg_model_20392.3	4	Reactome: R-HSA-5656121;Reactome: R-HSA-5656169;Reactome: R-HSA-5655862;Reactome: R-HSA-110312	"Translesion synthesis by POLI";"Termination of translesion DNA synthesis";"Translesion synthesis by POLK";"Translesion synthesis by REV1"
JAMg_model_4046.4	2	Reactome: R-HSA-8876198;Reactome: R-HSA-5357905	"RAB GEFs exchange GTP for GDP on RABs";"Regulation of TNFR1 signaling"
JAMg_model_2312.2	1	Reactome: R-HSA-111465	"Apoptotic cleavage of cellular proteins"
JAMg_model_20123.2	8	Reactome: R-HSA-9609690;Reactome: R-HSA-212300;Reactome: R-HSA-4551638;Reactome: R-HSA-3214841;Reactome: R-HSA-2559580;Reactome: R-HSA-8953750;Reactome: R-HSA-5617472;Reactome: R-HSA-8943724	"HCMV Early Events";"PRC2 methylates histones and DNA";"SUMOylation of chromatin organization proteins";"PKMTs methylate histone lysines";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by E2F6";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Regulation of PTEN gene transcription"
JAMg_model_2338.1	2	Reactome: R-HSA-1799339;Reactome: R-HSA-1236974	"SRP-dependent cotranslational protein targeting to membrane";"ER-Phagosome pathway"
JAMg_model_20948.1	24	Reactome: R-HSA-416482;Reactome: R-HSA-400042;Reactome: R-HSA-420092;Reactome: R-HSA-418597;Reactome: R-HSA-8964616;Reactome: R-HSA-8964315;Reactome: R-HSA-416476;Reactome: R-HSA-6814122;Reactome: R-HSA-392451;Reactome: R-HSA-418555;Reactome: R-HSA-500657;Reactome: R-HSA-202040;Reactome: R-HSA-392170;Reactome: R-HSA-4086398;Reactome: R-HSA-392851;Reactome: R-HSA-9009391;Reactome: R-HSA-163359;Reactome: R-HSA-418594;Reactome: R-HSA-432040;Reactome: R-HSA-428930;Reactome: R-HSA-381676;Reactome: R-HSA-418592;Reactome: R-HSA-456926;Reactome: R-HSA-418217	"G alpha (12/13) signalling events";"Adrenaline,noradrenaline inhibits insulin secretion";"Glucagon-type ligand receptors";"G alpha (z) signalling events";"G beta:gamma signalling through CDC42";"G beta:gamma signalling through BTK";"G alpha (q) signalling events";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"G beta:gamma signalling through PI3Kgamma";"G alpha (s) signalling events";"Presynaptic function of Kainate receptors";"G-protein activation";"ADP signalling through P2Y purinoceptor 12";"Ca2+ pathway";"Prostacyclin signalling through prostacyclin receptor";"Extra-nuclear estrogen signaling";"Glucagon signaling in metabolic regulation";"G alpha (i) signalling events";"Vasopressin regulates renal water homeostasis via Aquaporins";"Thromboxane signalling through TP receptor";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"ADP signalling through P2Y purinoceptor 1";"Thrombin signalling through proteinase activated receptors (PARs)";"G beta:gamma signalling through PLC beta"
JAMg_model_17987.2	10	Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-75953;Reactome: R-HSA-3214847;Reactome: R-HSA-73779;Reactome: R-HSA-76042	"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Transcription Initiation";"HATs acetylate histones";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation And Promoter Clearance"
JAMg_model_4185.7	2	Reactome: R-HSA-168928;Reactome: R-HSA-70350	"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"Fructose catabolism"
JAMg_model_17530.1	4	Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693554	"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_11340.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_10123.1	2	Reactome: R-HSA-5628897;Reactome: R-HSA-611105	"TP53 Regulates Metabolic Genes";"Respiratory electron transport"
JAMg_model_11629.1	2	Reactome: R-HSA-5635838;Reactome: R-HSA-5632681	"Activation of SMO";"Ligand-receptor interactions"
JAMg_model_3936.1	3	Reactome: R-HSA-6798695;Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Neutrophil degranulation";"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_17785.5	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_14337.1	5	Reactome: R-HSA-2206305;Reactome: R-HSA-2022857;Reactome: R-HSA-432720;Reactome: R-HSA-6798695;KEGG: 00531+3.1.6.14	"MPS IIID - Sanfilippo syndrome D";"Keratan sulfate degradation";"Lysosome Vesicle Biogenesis";"Neutrophil degranulation";"Glycosaminoglycan degradation"
JAMg_model_11775.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_11845.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_13980.1	1	Reactome: R-HSA-197264	"Nicotinamide salvaging"
JAMg_model_18864.1	5	Reactome: R-HSA-9615710;Reactome: R-HSA-917729;Reactome: R-HSA-162588;Reactome: R-HSA-9610379;Reactome: R-HSA-174490	"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Budding and maturation of HIV virion";"HCMV Late Events";"Membrane binding and targetting of GAG proteins"
JAMg_model_957.7	4	Reactome: R-HSA-6811434;Reactome: R-HSA-5625970;Reactome: R-HSA-2132295;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate KTN1";"MHC class II antigen presentation";"Kinesins"
JAMg_model_361.1	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_6354.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_4116.4	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_9222.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_21183.2	6	KEGG: 00520+1.1.1.22;KEGG: 00040+1.1.1.22;KEGG: 00053+1.1.1.22;MetaCyc: PWY-7346;Reactome: R-HSA-173599;MetaCyc: PWY-7820	"Amino sugar and nucleotide sugar metabolism";"Pentose and glucuronate interconversions";"Ascorbate and aldarate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)";"Formation of the active cofactor, UDP-glucuronate";"Teichuronic acid biosynthesis (B. subtilis 168)"
JAMg_model_15612.2	1	Reactome: R-HSA-433137	"Sodium-coupled sulphate, di- and tri-carboxylate transporters"
JAMg_model_13433.3	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_19568.1	3	Reactome: R-HSA-5632928;Reactome: R-HSA-5358565;Reactome: R-HSA-5632968	"Defective Mismatch Repair Associated With MSH2";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Defective Mismatch Repair Associated With MSH6"
JAMg_model_12161.1	1	Reactome: R-HSA-5389840	"Mitochondrial translation elongation"
JAMg_model_18930.1	17	Reactome: R-HSA-5693548;Reactome: R-HSA-1834949;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5685939;Reactome: R-HSA-5693568;Reactome: R-HSA-5693571;Reactome: R-HSA-3270619;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-912446;Reactome: R-HSA-5693565;Reactome: R-HSA-2559586;Reactome: R-HSA-6804756;Reactome: R-HSA-5693579	"Sensing of DNA Double Strand Breaks";"Cytosolic sensors of pathogen-associated DNA";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"HDR through MMEJ (alt-NHEJ)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Nonhomologous End-Joining (NHEJ)";"IRF3-mediated induction of type I IFN";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"Meiotic recombination";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"DNA Damage/Telomere Stress Induced Senescence";"Regulation of TP53 Activity through Phosphorylation";"Homologous DNA Pairing and Strand Exchange"
JAMg_model_156.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_1944.1	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394	"UCH proteinases";"DNA Damage Recognition in GG-NER"
JAMg_model_9932.6	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_16456.2	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_12480.1	11	MetaCyc: PWY-922;MetaCyc: PWY-6859;MetaCyc: PWY-7102;Reactome: R-HSA-191273;MetaCyc: PWY-6174;MetaCyc: PWY-5123;MetaCyc: PWY-7560;KEGG: 00900+5.3.3.2;MetaCyc: PWY-7391;MetaCyc: PWY-7524;MetaCyc: PWY-6383	"Mevalonate pathway I";"All-trans-farnesol biosynthesis";"Bisabolene biosynthesis (engineered)";"Cholesterol biosynthesis";"Mevalonate pathway II (archaea)";"Trans, trans-farnesyl diphosphate biosynthesis";"Methylerythritol phosphate pathway II";"Terpenoid backbone biosynthesis";"Isoprene biosynthesis II (engineered)";"Mevalonate pathway III (archaea)";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis"
JAMg_model_10263.3	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_17943.2	5	Reactome: R-HSA-75035;Reactome: R-HSA-1445148;Reactome: R-HSA-5628897;Reactome: R-HSA-111447;Reactome: R-HSA-5625740	"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"TP53 Regulates Metabolic Genes";"Activation of BAD and translocation to mitochondria";"RHO GTPases activate PKNs"
JAMg_model_10106.1	3	KEGG: 00480+4.3.2.9;Reactome: R-HSA-174403;MetaCyc: PWY-4041	"Glutathione metabolism";"Glutathione synthesis and recycling";"Gamma-glutamyl cycle"
JAMg_model_14261.1	3	MetaCyc: PWY-2161;KEGG: 00790+6.3.2.17;Reactome: R-HSA-196757	"Folate polyglutamylation";"Folate biosynthesis";"Metabolism of folate and pterines"
JAMg_model_8501.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_16099.1	1	Reactome: R-HSA-2514853	"Condensation of Prometaphase Chromosomes"
JAMg_model_18133.5	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_17664.5	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_13539.1	7	Reactome: R-HSA-5625886;Reactome: R-HSA-983231;Reactome: R-HSA-8943724;Reactome: R-HSA-3214815;Reactome: R-HSA-9029569;Reactome: R-HSA-3214842;Reactome: R-HSA-9018519	"Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3";"Factors involved in megakaryocyte development and platelet production";"Regulation of PTEN gene transcription";"HDACs deacetylate histones";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"HDMs demethylate histones";"Estrogen-dependent gene expression"
JAMg_model_15875.4	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_16886.4	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_7513.1	7	MetaCyc: PWY-6470;KEGG: 00510+2.7.8.15;Reactome: R-HSA-4549356;Reactome: R-HSA-446193;MetaCyc: PWY-6471;MetaCyc: PWY-5265;KEGG: 00550+2.7.8.13	"Peptidoglycan biosynthesis V (beta-lactam resistance)";"N-Glycan biosynthesis";"Defective DPAGT1 causes DPAGT1-CDG (CDG-1j) and CMSTA2";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Peptidoglycan biosynthesis IV (Enterococcus faecium)";"Peptidoglycan biosynthesis II (staphylococci)";"Peptidoglycan biosynthesis"
JAMg_model_4808.1	2	Reactome: R-HSA-5689880;Reactome: R-HSA-8949215	"Ub-specific processing proteases";"Mitochondrial calcium ion transport"
JAMg_model_20039.1	56	Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-1236978;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-180534	"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Cross-presentation of soluble exogenous antigens (endosomes)";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4"
JAMg_model_20843.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_17759.1	2	Reactome: R-HSA-1268020;Reactome: R-HSA-5205685	"Mitochondrial protein import";"Pink/Parkin Mediated Mitophagy"
JAMg_model_11168.1	4	Reactome: R-HSA-6811436;Reactome: R-HSA-2132295;Reactome: R-HSA-6807878;Reactome: R-HSA-3371497	"COPI-independent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"COPI-mediated anterograde transport";"HSP90 chaperone cycle for steroid hormone receptors (SHR)"
JAMg_model_21322.1	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226	"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_2961.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_17619.2	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_15974.2	10	Reactome: R-HSA-70263;MetaCyc: PWY-8004;MetaCyc: PWY-6886;KEGG: 00010+2.7.2.3;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-6901;KEGG: 00710+2.7.2.3;MetaCyc: PWY-7003;Reactome: R-HSA-70171	"Gluconeogenesis";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Carbon fixation in photosynthetic organisms";"Glycerol degradation to butanol";"Glycolysis"
JAMg_model_1476.1	10	MetaCyc: PWY-8001;KEGG: 00430+2.3.2.2;MetaCyc: PWY-5826;KEGG: 00480+2.3.2.2+3.4.19.13;KEGG: 00460+2.3.2.2;MetaCyc: PWY-4061;MetaCyc: PWY-7559;MetaCyc: PWY-6842;MetaCyc: PWY-4041;MetaCyc: PWY-7112	"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Taurine and hypotaurine metabolism";"Hypoglycin biosynthesis";"Glutathione metabolism";"Cyanoamino acid metabolism";"Glutathione-mediated detoxification I";"Glutathione degradation (DUG pathway";"Glutathione-mediated detoxification II";"Gamma-glutamyl cycle";"4-hydroxy-2-nonenal detoxification"
JAMg_model_4462.1	2	Reactome: R-HSA-8964539;Reactome: R-HSA-2151201	"Glutamate and glutamine metabolism";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_1565.3	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_20621.1	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_19253.1	16	Reactome: R-HSA-167246;Reactome: R-HSA-75955;Reactome: R-HSA-167152;Reactome: R-HSA-9010553;Reactome: R-HSA-167238;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-674695;Reactome: R-HSA-8951664;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-983168;Reactome: R-HSA-167200;Reactome: R-HSA-167243;Reactome: R-HSA-6796648;Reactome: R-HSA-167290	"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"Regulation of expression of SLITs and ROBOs";"Pausing and recovery of Tat-mediated HIV elongation";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"RNA Polymerase II Pre-transcription Events";"Neddylation";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Antigen processing: Ubiquitination & Proteasome degradation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Tat-mediated HIV elongation arrest and recovery";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of HIV elongation"
JAMg_model_19299.2	24	Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-983189;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833	"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Kinesins";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly"
JAMg_model_19874.3	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_8124.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_11694.1	11	Reactome: R-HSA-5685938;Reactome: R-HSA-525793;Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-428890;Reactome: R-HSA-983231;Reactome: R-HSA-5693565;KEGG: 04660+2.7.10.2;Reactome: R-HSA-69231;Reactome: R-HSA-8939236;Reactome: R-HSA-8940973	"HDR through Single Strand Annealing (SSA)";"Myogenesis";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"Role of ABL in ROBO-SLIT signaling";"Factors involved in megakaryocyte development and platelet production";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"T cell receptor signaling pathway";"Cyclin D associated events in G1";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"RUNX2 regulates osteoblast differentiation"
JAMg_model_1575.2	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_8081.1	6	Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-6791226;Reactome: R-HSA-380994;Reactome: R-HSA-450385;Reactome: R-HSA-450513	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Major pathway of rRNA processing in the nucleolus and cytosol";"ATF4 activates genes in response to endoplasmic reticulum stress";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA"
JAMg_model_616.1	1	Reactome: R-HSA-70171	"Glycolysis"
JAMg_model_9563.1	5	Reactome: R-HSA-390471;Reactome: R-HSA-389957;Reactome: R-HSA-6814122;Reactome: R-HSA-389960;Reactome: R-HSA-390450	"Association of TriC/CCT with target proteins during biosynthesis";"Prefoldin mediated transfer of substrate to CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Formation of tubulin folding intermediates by CCT/TriC";"Folding of actin by CCT/TriC"
JAMg_model_8162.1	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380284;Reactome: R-HSA-5620912	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane"
JAMg_model_17832.1	58	Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-5689901;Reactome: R-HSA-4641258;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684	"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Metalloprotease DUBs";"Degradation of DVL";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state"
JAMg_model_18188.5	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_10638.2	16	Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Peptide chain elongation";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_8160.1	12	Reactome: R-HSA-70171;MetaCyc: PWY-6142;MetaCyc: PWY-1861;MetaCyc: PWY-5484;MetaCyc: PWY-1042;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00710+4.1.2.13;KEGG: 00680+4.1.2.13;KEGG: 00030+4.1.2.13;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385	"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Methane metabolism";"Pentose phosphate pathway";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)"
JAMg_model_10840.2	11	Reactome: R-HSA-110314;Reactome: R-HSA-5656169;Reactome: R-HSA-174430;Reactome: R-HSA-5651801;Reactome: R-HSA-5685942;Reactome: R-HSA-6782210;Reactome: R-HSA-68952;Reactome: R-HSA-5696400;Reactome: R-HSA-6782135;Reactome: R-HSA-68962;Reactome: R-HSA-5696397	"Recognition of DNA damage by PCNA-containing replication complex";"Termination of translesion DNA synthesis";"Telomere C-strand synthesis initiation";"PCNA-Dependent Long Patch Base Excision Repair";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"DNA replication initiation";"Dual Incision in GG-NER";"Dual incision in TC-NER";"Activation of the pre-replicative complex";"Gap-filling DNA repair synthesis and ligation in GG-NER"
JAMg_model_513.1	8	Reactome: R-HSA-8854518;Reactome: R-HSA-5620912;Reactome: R-HSA-380259;Reactome: R-HSA-6798695;Reactome: R-HSA-380320;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"Anchoring of the basal body to the plasma membrane";"Loss of Nlp from mitotic centrosomes";"Neutrophil degranulation";"Recruitment of NuMA to mitotic centrosomes";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_6775.1	14	MetaCyc: PWY-7187;Reactome: R-HSA-74217;KEGG: 00760+3.6.1.9;MetaCyc: PWY-6545;KEGG: 00230+3.6.1.9;KEGG: 00500+3.6.1.9;MetaCyc: PWY-7206;MetaCyc: PWY-7821;KEGG: 00240+3.6.1.9;KEGG: 00740+3.6.1.9;MetaCyc: PWY-7184;KEGG: 00230+2.7.1.20;KEGG: 00770+3.6.1.9;MetaCyc: PWY-6619	"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Purine salvage";"Nicotinate and nicotinamide metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Purine metabolism";"Starch and sucrose metabolism";"Pyrimidine deoxyribonucleotides dephosphorylation";"Tunicamycin biosynthesis";"Pyrimidine metabolism";"Riboflavin metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism";"Pantothenate and CoA biosynthesis";"Adenine and adenosine salvage VI"
JAMg_model_10212.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_3570.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_1998.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_7052.1	1	Reactome: R-HSA-196108	"Pregnenolone biosynthesis"
JAMg_model_20991.1	10	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-975957;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-983189;KEGG: 05170+2.7.11.1;Reactome: R-HSA-6811434	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Human cytomegalovirus infection";"Kinesins";"Human immunodeficiency virus 1 infection";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_17580.2	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_17071.1	44	Reactome: R-HSA-1295596;Reactome: R-HSA-5663213;Reactome: R-HSA-445144;Reactome: R-HSA-5674135;Reactome: R-HSA-5673001;Reactome: R-HSA-6811558;Reactome: R-HSA-6802946;Reactome: R-HSA-6802955;Reactome: R-HSA-2029482;Reactome: R-HSA-444257;Reactome: R-HSA-170968;Reactome: R-HSA-198753;Reactome: R-HSA-74749;Reactome: R-HSA-881907;Reactome: R-HSA-982772;Reactome: R-HSA-9634638;Reactome: R-HSA-9635465;Reactome: R-HSA-8943724;Reactome: R-HSA-5654733;Reactome: R-HSA-2559585;Reactome: R-HSA-6802948;KEGG: 04150+2.7.11.24;Reactome: R-HSA-5654727;Reactome: R-HSA-162658;Reactome: R-HSA-9627069;Reactome: R-HSA-9649948;Reactome: R-HSA-5654726;Reactome: R-HSA-6802952;Reactome: R-HSA-8940973;Reactome: R-HSA-2559582;Reactome: R-HSA-5654732;Reactome: R-HSA-456926;Reactome: R-HSA-450341;Reactome: R-HSA-5668599;Reactome: R-HSA-879415;Reactome: R-HSA-8939211;Reactome: R-HSA-2559580;Reactome: R-HSA-3371453;Reactome: R-HSA-5675221;Reactome: R-HSA-2871796;Reactome: R-HSA-202670;Reactome: R-HSA-5674499;Reactome: R-HSA-112409;Reactome: R-HSA-375165	"Spry regulation of FGF signaling";"RHO GTPases Activate WASPs and WAVEs";"Signal transduction by L1";"MAP2K and MAPK activation";"RAF/MAP kinase cascade";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Signaling by moderate kinase activity BRAF mutants";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Regulation of actin dynamics for phagocytic cup formation";"RSK activation";"Frs2-mediated activation";"ERK/MAPK targets";"Signal attenuation";"Gastrin-CREB signalling pathway via PKC and MAPK";"Growth hormone receptor signaling";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"Suppression of apoptosis";"Regulation of PTEN gene transcription";"Negative regulation of FGFR4 signaling";"Oncogene Induced Senescence";"Signaling by high-kinase activity BRAF mutants";"mTOR signaling pathway";"Negative regulation of FGFR2 signaling";"Golgi Cisternae Pericentriolar Stack Reorganization";"Regulation of the apoptosome activity";"Signaling downstream of RAS mutants";"Negative regulation of FGFR1 signaling";"Signaling by BRAF and RAF fusions";"RUNX2 regulates osteoblast differentiation";"Senescence-Associated Secretory Phenotype (SASP)";"Negative regulation of FGFR3 signaling";"Thrombin signalling through proteinase activated receptors (PARs)";"Activation of the AP-1 family of transcription factors";"RHO GTPases Activate NADPH Oxidases";"Advanced glycosylation endproduct receptor signaling";"ESR-mediated signaling";"Oxidative Stress Induced Senescence";"Regulation of HSF1-mediated heat shock response";"Negative regulation of MAPK pathway";"FCERI mediated MAPK activation";"ERKs are inactivated";"Negative feedback regulation of MAPK pathway";"RAF-independent MAPK1/3 activation";"NCAM signaling for neurite out-growth"
JAMg_model_2764.2	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_18834.2	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_12502.1	3	Reactome: R-HSA-5173105;MetaCyc: PWY-7979;KEGG: 00515+2.7.1.183	"O-linked glycosylation";"Protein O-mannosylation III (mammals, core M3)";"Mannose type O-glycan biosynthesis"
JAMg_model_17849.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_11500.2	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_16474.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_13907.1	5	Reactome: R-HSA-6811438;Reactome: R-HSA-6811434;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-204005	"Intra-Golgi traffic";"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"COPII-mediated vesicle transport"
JAMg_model_8507.1	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_9417.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_18044.1	5	Reactome: R-HSA-381426;Reactome: R-HSA-8957275;Reactome: R-HSA-532668;Reactome: R-HSA-879415;Reactome: R-HSA-901042	"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Advanced glycosylation endproduct receptor signaling";"Calnexin/calreticulin cycle"
JAMg_model_19199.4	1	KEGG: 00970+6.1.1.3	"Aminoacyl-tRNA biosynthesis"
JAMg_model_14925.1	2	KEGG: 00500+3.2.1.28;Reactome: R-HSA-189085	"Starch and sucrose metabolism";"Digestion of dietary carbohydrate"
JAMg_model_3218.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-901032	"Protein ubiquitination";"ER Quality Control Compartment (ERQC)"
JAMg_model_9642.2	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_8940.4	5	KEGG: 00250+6.3.5.4;Reactome: R-HSA-9648895;Reactome: R-HSA-9633012;Reactome: R-HSA-8963693;Reactome: R-HSA-380994	"Alanine, aspartate and glutamate metabolism";"Response of EIF2AK1 (HRI) to heme deficiency";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Aspartate and asparagine metabolism";"ATF4 activates genes in response to endoplasmic reticulum stress"
JAMg_model_2759.1	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_17486.3	2	Reactome: R-HSA-1362409;Reactome: R-HSA-1268020	"Mitochondrial iron-sulfur cluster biogenesis";"Mitochondrial protein import"
JAMg_model_19491.3	4	Reactome: R-HSA-1362409;Reactome: R-HSA-947581;MetaCyc: PWY-7250;KEGG: 00730+2.8.1.7	"Mitochondrial iron-sulfur cluster biogenesis";"Molybdenum cofactor biosynthesis";"[2Fe-2S] iron-sulfur cluster biosynthesis";"Thiamine metabolism"
JAMg_model_13054.1	3	KEGG: 00270+5.3.1.23;MetaCyc: PWY-7174;MetaCyc: PWY-4361	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I"
JAMg_model_860.2	2	Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_1341.1	2	Reactome: R-HSA-5696394;Reactome: R-HSA-5689603	"DNA Damage Recognition in GG-NER";"UCH proteinases"
JAMg_model_20787.9	32	Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167238;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-73776;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-75955;Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-167158;Reactome: R-HSA-113418	"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Promoter Escape";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Elongation";"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex"
JAMg_model_8702.1	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_19983.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_579.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_6954.1	7	Reactome: R-HSA-212300;Reactome: R-HSA-9609690;Reactome: R-HSA-5617472;Reactome: R-HSA-8953750;Reactome: R-HSA-2559580;Reactome: R-HSA-3214841;Reactome: R-HSA-8943724	"PRC2 methylates histones and DNA";"HCMV Early Events";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcriptional Regulation by E2F6";"Oxidative Stress Induced Senescence";"PKMTs methylate histone lysines";"Regulation of PTEN gene transcription"
JAMg_model_7210.1	5	Reactome: R-HSA-196741;Reactome: R-HSA-3359469;Reactome: R-HSA-1614635;Reactome: R-HSA-156581;Reactome: R-HSA-3359467	"Cobalamin (Cbl, vitamin B12) transport and metabolism";"Defective MTR causes methylmalonic aciduria and homocystinuria type cblG";"Sulfur amino acid metabolism";"Methylation";"Defective MTRR causes methylmalonic aciduria and homocystinuria type cblE"
JAMg_model_10232.1	3	Reactome: R-HSA-5358565;Reactome: R-HSA-5632928;Reactome: R-HSA-5632968	"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Defective Mismatch Repair Associated With MSH2";"Defective Mismatch Repair Associated With MSH6"
JAMg_model_13339.4	1	Reactome: R-HSA-388844	"Receptor-type tyrosine-protein phosphatases"
JAMg_model_11305.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_12310.1	9	Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-1362277;Reactome: R-HSA-69205;Reactome: R-HSA-68827;Reactome: R-HSA-68867;Reactome: R-HSA-68689;Reactome: R-HSA-69017;Reactome: R-HSA-176187	"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Transcription of E2F targets under negative control by DREAM complex";"G1/S-Specific Transcription";"CDT1 association with the CDC6:ORC:origin complex";"Assembly of the pre-replicative complex";"CDC6 association with the ORC:origin complex";"CDK-mediated phosphorylation and removal of Cdc6";"Activation of ATR in response to replication stress"
JAMg_model_10270.1	10	Reactome: R-HSA-209560;MetaCyc: PWY-3341;Reactome: R-HSA-209543;MetaCyc: PWY-4981;Reactome: R-HSA-8964539;KEGG: 00330+1.5.1.2;Reactome: R-HSA-9020702;MetaCyc: PWY-6344;Reactome: R-HSA-5205685;Reactome: R-HSA-205043	"NF-kB is activated and signals survival";"L-proline biosynthesis III (from L-ornithine)";"p75NTR recruits signalling complexes";"L-proline biosynthesis II (from arginine)";"Glutamate and glutamine metabolism";"Arginine and proline metabolism";"Interleukin-1 signaling";"L-ornithine degradation II (Stickland reaction)";"Pink/Parkin Mediated Mitophagy";"NRIF signals cell death from the nucleus"
JAMg_model_7144.2	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_7801.1	1	Reactome: R-HSA-380320	"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_322.1	1	Reactome: R-HSA-156584	"Cytosolic sulfonation of small molecules"
JAMg_model_16633.1	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_13433.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_11562.3	2	Reactome: R-HSA-203927;Reactome: R-HSA-426486	"MicroRNA (miRNA) biogenesis";"Small interfering RNA (siRNA) biogenesis"
JAMg_model_13732.1	15	Reactome: R-HSA-9029569;Reactome: R-HSA-8936459;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-8948700;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884	"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX"
JAMg_model_14518.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_19431.1	13	Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_17137.1	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_615.1	5	Reactome: R-HSA-5689877;Reactome: R-HSA-983168;Reactome: R-HSA-977225;Reactome: R-HSA-5205685;Reactome: R-HSA-9646399	"Josephin domain DUBs";"Antigen processing: Ubiquitination & Proteasome degradation";"Amyloid fiber formation";"Pink/Parkin Mediated Mitophagy";"Aggrephagy"
JAMg_model_18264.1	1	Reactome: R-HSA-913709	"O-linked glycosylation of mucins"
JAMg_model_7998.2	2	Reactome: R-HSA-1296052;Reactome: R-HSA-418457	"Ca2+ activated K+ channels";"cGMP effects"
JAMg_model_12459.2	16	Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557	"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Viral mRNA Translation";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis"
JAMg_model_6324.4	10	KEGG: 00561+2.3.1.15;KEGG: 00564+2.3.1.15;Reactome: R-HSA-1483166;MetaCyc: PWY-6453;MetaCyc: PWY-7411;MetaCyc: PWY-8055;MetaCyc: PWY-8051;MetaCyc: PWY-7587;MetaCyc: PWY-5667;MetaCyc: PWY-8053	"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Synthesis of PA";"Stigma estolide biosynthesis";"Phosphatidate biosynthesis (yeast)";"Palmitoyl ethanolamide biosynthesis";"Anandamide biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"CDP-diacylglycerol biosynthesis I";"Anandamide biosynthesis II"
JAMg_model_3454.1	3	KEGG: 00230+2.7.1.20;Reactome: R-HSA-74217;MetaCyc: PWY-6619	"Purine metabolism";"Purine salvage";"Adenine and adenosine salvage VI"
JAMg_model_10058.1	2	Reactome: R-HSA-6785470;Reactome: R-HSA-6784531	"tRNA processing in the mitochondrion";"tRNA processing in the nucleus"
JAMg_model_16071.5	9	Reactome: R-HSA-9649948;Reactome: R-HSA-5674135;Reactome: R-HSA-6802948;Reactome: R-HSA-445355;Reactome: R-HSA-114608;Reactome: R-HSA-6798695;Reactome: R-HSA-6802955;Reactome: R-HSA-6802952;Reactome: R-HSA-6802946	"Signaling downstream of RAS mutants";"MAP2K and MAPK activation";"Signaling by high-kinase activity BRAF mutants";"Smooth Muscle Contraction";"Platelet degranulation";"Neutrophil degranulation";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Signaling by BRAF and RAF fusions";"Signaling by moderate kinase activity BRAF mutants"
JAMg_model_16396.2	56	Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978	"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)"
JAMg_model_12117.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_6589.5	3	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer"
JAMg_model_7186.4	18	MetaCyc: PWY-7383;MetaCyc: PWY-6643;KEGG: 00401+2.6.1.1;KEGG: 00270+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00250+2.6.1.1;KEGG: 00950+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00710+2.6.1.1;KEGG: 00400+2.6.1.1;MetaCyc: PWY-6642;KEGG: 00960+2.6.1.1;MetaCyc: PWY-7117;MetaCyc: PWY-7115;MetaCyc: PWY-6638;KEGG: 00220+2.6.1.1;KEGG: 00360+2.6.1.1	"Anaerobic energy metabolism (invertebrates, cytosol)";"Coenzyme M biosynthesis II";"Novobiocin biosynthesis";"Cysteine and methionine metabolism";"Partial TCA cycle (obligate autotrophs)";"Alanine, aspartate and glutamate metabolism";"Isoquinoline alkaloid biosynthesis";"Tyrosine metabolism";"Arginine and proline metabolism";"Carbon fixation in photosynthetic organisms";"Phenylalanine, tyrosine and tryptophan biosynthesis";"(R)-cysteate degradation";"Tropane, piperidine and pyridine alkaloid biosynthesis";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Sulfolactate degradation III";"Arginine biosynthesis";"Phenylalanine metabolism"
JAMg_model_6599.4	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_3264.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_18336.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_6026.1	3	Reactome: R-HSA-202427;Reactome: R-HSA-6798695;Reactome: R-HSA-6807004	"Phosphorylation of CD3 and TCR zeta chains";"Neutrophil degranulation";"Negative regulation of MET activity"
JAMg_model_11147.1	4	MetaCyc: PWY-6855;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00520+3.2.1.14	"Chitin degradation I (archaea)";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_13054.7	3	MetaCyc: PWY-4361;MetaCyc: PWY-7174;KEGG: 00270+5.3.1.23	"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"Cysteine and methionine metabolism"
JAMg_model_6424.2	27	Reactome: R-HSA-191859;Reactome: R-HSA-72163;Reactome: R-HSA-77588;Reactome: R-HSA-674695;Reactome: R-HSA-6807505;Reactome: R-HSA-112382;Reactome: R-HSA-167242;Reactome: R-HSA-167200;Reactome: R-HSA-159230;Reactome: R-HSA-77595;Reactome: R-HSA-159231;Reactome: R-HSA-72165;Reactome: R-HSA-72187;Reactome: R-HSA-73856;Reactome: R-HSA-8851708;Reactome: R-HSA-111367;Reactome: R-HSA-159227;Reactome: R-HSA-975957;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-975956;Reactome: R-HSA-167152;Reactome: R-HSA-72086;Reactome: R-HSA-72203;Reactome: R-HSA-159236;Reactome: R-HSA-6803529;Reactome: R-HSA-9010553	"snRNP Assembly";"mRNA Splicing - Major Pathway";"SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs";"RNA Polymerase II Pre-transcription Events";"RNA polymerase II transcribes snRNA genes";"Formation of RNA Pol II elongation complex";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Transport of the SLBP Dependant Mature mRNA";"Processing of Intronless Pre-mRNAs";"Transport of Mature mRNA Derived from an Intronless Transcript";"mRNA Splicing - Minor Pathway";"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination";"Signaling by FGFR2 IIIa TM";"SLBP independent Processing of Histone Pre-mRNAs";"Transport of the SLBP independent Mature mRNA";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Formation of HIV elongation complex in the absence of HIV Tat";"mRNA Capping";"Processing of Capped Intron-Containing Pre-mRNA";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"FGFR2 alternative splicing";"Regulation of expression of SLITs and ROBOs"
JAMg_model_4341.1	56	Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556	"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport"
JAMg_model_4058.1	2	Reactome: R-HSA-2142700;Reactome: R-HSA-2142691	"Synthesis of Lipoxins (LX)";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_5776.7	3	Reactome: R-HSA-1614603;Reactome: R-HSA-2408508;Reactome: R-HSA-1614558	"Cysteine formation from homocysteine";"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Degradation of cysteine and homocysteine"
JAMg_model_17619.1	3	Reactome: R-HSA-416482;Reactome: R-HSA-194840;Reactome: R-HSA-193648	"G alpha (12/13) signalling events";"Rho GTPase cycle";"NRAGE signals death through JNK"
JAMg_model_3319.2	22	KEGG: 00350+2.6.1.1;KEGG: 00950+2.6.1.1;KEGG: 00400+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00710+2.6.1.1;MetaCyc: PWY-6642;Reactome: R-HSA-72163;KEGG: 00960+2.6.1.1;MetaCyc: PWY-7117;MetaCyc: PWY-7115;MetaCyc: PWY-6638;KEGG: 00360+2.6.1.1;KEGG: 00220+2.6.1.1;Reactome: R-HSA-73856;MetaCyc: PWY-7383;MetaCyc: PWY-6643;Reactome: R-HSA-72187;KEGG: 00401+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00270+2.6.1.1;KEGG: 00250+2.6.1.1;Reactome: R-HSA-159236	"Tyrosine metabolism";"Isoquinoline alkaloid biosynthesis";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Arginine and proline metabolism";"Carbon fixation in photosynthetic organisms";"(R)-cysteate degradation";"mRNA Splicing - Major Pathway";"Tropane, piperidine and pyridine alkaloid biosynthesis";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Sulfolactate degradation III";"Phenylalanine metabolism";"Arginine biosynthesis";"RNA Polymerase II Transcription Termination";"Anaerobic energy metabolism (invertebrates, cytosol)";"Coenzyme M biosynthesis II";"mRNA 3'-end processing";"Novobiocin biosynthesis";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism";"Alanine, aspartate and glutamate metabolism";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_8083.1	12	Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-6804756;Reactome: R-HSA-167200;Reactome: R-HSA-167290;Reactome: R-HSA-6796648;Reactome: R-HSA-167243;Reactome: R-HSA-167238;Reactome: R-HSA-167152;Reactome: R-HSA-112382;Reactome: R-HSA-167287	"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Regulation of TP53 Activity through Phosphorylation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Pausing and recovery of HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery"
JAMg_model_10824.1	12	KEGG: 00230+2.7.1.25;KEGG: 00920+2.7.7.4;MetaCyc: PWY-5278;KEGG: 00450+2.7.7.4;Reactome: R-HSA-174362;Reactome: R-HSA-2408550;KEGG: 00261+2.7.7.4;MetaCyc: PWY-5340;MetaCyc: PWY-6683;KEGG: 00920+2.7.1.25;KEGG: 00230+2.7.7.4;MetaCyc: PWY-6932	"Purine metabolism";"Sulfur metabolism";"Sulfite oxidation III";"Selenocompound metabolism";"Transport and synthesis of PAPS";"Metabolism of ingested H2SeO4 and H2SeO3 into H2Se";"Monobactam biosynthesis";"Sulfate activation for sulfonation";"Assimilatory sulfate reduction III";"Sulfur metabolism";"Purine metabolism";"Selenate reduction"
JAMg_model_1776.1	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_12537.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_12919.3	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_6601.5	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_3999.1	2	Reactome: R-HSA-3065676;Reactome: R-HSA-3065678	"SUMO is conjugated to E1 (UBA2:SAE1)";"SUMO is transferred from E1 to E2 (UBE2I, UBC9)"
JAMg_model_13521.2	8	Reactome: R-HSA-180024;Reactome: R-HSA-5610787;Reactome: R-HSA-163615;Reactome: R-HSA-381676;Reactome: R-HSA-164378;Reactome: R-HSA-983231;Reactome: R-HSA-442720;Reactome: R-HSA-432040	"DARPP-32 events";"Hedgehog 'off' state";"PKA activation";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"PKA activation in glucagon signalling";"Factors involved in megakaryocyte development and platelet production";"CREB1 phosphorylation through the activation of Adenylate Cyclase";"Vasopressin regulates renal water homeostasis via Aquaporins"
JAMg_model_12887.3	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_20524.2	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_2764.6	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_9921.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_2017.5	5	Reactome: R-HSA-6798695;KEGG: 00760+6.3.4.21;Reactome: R-HSA-197264;MetaCyc: PWY-5381;Reactome: R-HSA-1368108	"Neutrophil degranulation";"Nicotinate and nicotinamide metabolism";"Nicotinamide salvaging";"Pyridine nucleotide cycling (plants)";"BMAL1:CLOCK,NPAS2 activates circadian gene expression"
JAMg_model_17734.7	5	Reactome: R-HSA-189451;MetaCyc: PWY-5189;Reactome: R-HSA-6798695;MetaCyc: PWY-5188;KEGG: 00860+4.2.1.24	"Heme biosynthesis";"Tetrapyrrole biosynthesis II (from glycine)";"Neutrophil degranulation";"Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism"
JAMg_model_6938.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_13537.1	5	Reactome: R-HSA-6798695;MetaCyc: PWY-7282;Reactome: R-HSA-964975;KEGG: 00750+2.7.1.35;MetaCyc: PWY-7204	"Neutrophil degranulation";"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"Vitamins B6 activation to pyridoxal phosphate";"Vitamin B6 metabolism";"Pyridoxal 5'-phosphate salvage II (plants)"
JAMg_model_18156.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_7357.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_9047.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_4828.1	3	Reactome: R-HSA-9634638;Reactome: R-HSA-5663220;Reactome: R-HSA-525793	"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"RHO GTPases Activate Formins";"Myogenesis"
JAMg_model_3293.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_21027.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_5317.2	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_16086.1	2	Reactome: R-HSA-71240;KEGG: 00380+1.13.11.11	"Tryptophan catabolism";"Tryptophan metabolism"
JAMg_model_16807.1	3	Reactome: R-HSA-8963693;KEGG: 00250+3.5.1.1;KEGG: 00460+3.5.1.1	"Aspartate and asparagine metabolism";"Alanine, aspartate and glutamate metabolism";"Cyanoamino acid metabolism"
JAMg_model_6324.3	10	MetaCyc: PWY-8053;MetaCyc: PWY-5667;MetaCyc: PWY-7587;MetaCyc: PWY-8051;MetaCyc: PWY-6453;Reactome: R-HSA-1483166;MetaCyc: PWY-7411;MetaCyc: PWY-8055;KEGG: 00564+2.3.1.15;KEGG: 00561+2.3.1.15	"Anandamide biosynthesis II";"CDP-diacylglycerol biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"Anandamide biosynthesis I";"Stigma estolide biosynthesis";"Synthesis of PA";"Phosphatidate biosynthesis (yeast)";"Palmitoyl ethanolamide biosynthesis";"Glycerophospholipid metabolism";"Glycerolipid metabolism"
JAMg_model_18697.1	1	Reactome: R-HSA-1614635	"Sulfur amino acid metabolism"
JAMg_model_12498.1	3	Reactome: R-HSA-5083627;Reactome: R-HSA-5173105;Reactome: R-HSA-2022854	"Defective LARGE causes MDDGA6 and MDDGB6";"O-linked glycosylation";"Keratan sulfate biosynthesis"
JAMg_model_5847.1	2	Reactome: R-HSA-5610787;Reactome: R-HSA-5620924	"Hedgehog 'off' state";"Intraflagellar transport"
JAMg_model_6932.2	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_9009.1	4	MetaCyc: PWY-7219;KEGG: 00730+2.7.4.3;Reactome: R-HSA-499943;KEGG: 00230+2.7.4.3	"Adenosine ribonucleotides de novo biosynthesis";"Thiamine metabolism";"Interconversion of nucleotide di- and triphosphates";"Purine metabolism"
JAMg_model_20979.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_20927.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_16961.3	3	Reactome: R-HSA-6807505;Reactome: R-HSA-749476;Reactome: R-HSA-76071	"RNA polymerase II transcribes snRNA genes";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 3 Promoter"
JAMg_model_2104.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_13747.2	29	Reactome: R-HSA-427413;Reactome: R-HSA-167160;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-5696400;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-73772;Reactome: R-HSA-674695;Reactome: R-HSA-75953;Reactome: R-HSA-112382;Reactome: R-HSA-73762;Reactome: R-HSA-167200;Reactome: R-HSA-5696395;Reactome: R-HSA-6796648;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-167246;Reactome: R-HSA-77075;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-72086;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-73863;Reactome: R-HSA-76042;Reactome: R-HSA-6781823	"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual Incision in GG-NER";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Initiation";"Formation of RNA Pol II elongation complex";"RNA Polymerase I Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Formation of Incision Complex in GG-NER";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"Tat-mediated elongation of the HIV-1 transcript";"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"mRNA Capping";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase I Transcription Termination";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_13433.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_7069.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_10771.1	1	Reactome: R-HSA-912446	"Meiotic recombination"
JAMg_model_20773.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_20334.12	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_11657.3	2	Reactome: R-HSA-1169408;Reactome: R-HSA-168276	"ISG15 antiviral mechanism";"NS1 Mediated Effects on Host Pathways"
JAMg_model_2904.1	3	Reactome: R-HSA-3899300;Reactome: R-HSA-3232118;Reactome: R-HSA-4090294	"SUMOylation of transcription cofactors";"SUMOylation of transcription factors";"SUMOylation of intracellular receptors"
JAMg_model_18860.1	2	Reactome: R-HSA-8854214;Reactome: R-HSA-8873719	"TBC/RABGAPs";"RAB geranylgeranylation"
JAMg_model_11805.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_6815.3	6	Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444	"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_16827.1	6	Reactome: R-HSA-6803204;Reactome: R-HSA-6803205;Reactome: R-HSA-6804759;Reactome: R-HSA-6803211;Reactome: R-HSA-139915;Reactome: R-HSA-6803207	"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain";"Regulation of TP53 Activity through Association with Co-factors";"TP53 Regulates Transcription of Death Receptors and Ligands";"Activation of PUMA and translocation to mitochondria";"TP53 Regulates Transcription of Caspase Activators and Caspases"
JAMg_model_12166.1	1	Reactome: R-HSA-8854214	"TBC/RABGAPs"
JAMg_model_13508.2	3	Reactome: R-HSA-975577;Reactome: R-HSA-2022854;Reactome: R-HSA-913709	"N-Glycan antennae elongation";"Keratan sulfate biosynthesis";"O-linked glycosylation of mucins"
JAMg_model_9982.1	19	MetaCyc: PWY-7291;MetaCyc: PWY-735;MetaCyc: PWY-7854;MetaCyc: PWY-7288;MetaCyc: PWY-7338;KEGG: 00592+1.3.3.6;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7858;MetaCyc: PWY-7337;MetaCyc: PWY-7574;KEGG: 00410+1.3.3.6;MetaCyc: PWY-6837;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-5136;MetaCyc: PWY-7007;MetaCyc: PWY-7726;MetaCyc: PWY-7606;KEGG: 00640+1.3.3.6	"Oleate beta-oxidation (isomerase-dependent, yeast)";"Jasmonic acid biosynthesis";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"alpha-Linolenic acid metabolism";"Fatty acid degradation";"(5Z)-dodecenoate biosynthesis II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Propanoyl-coa degradation II";"beta-Alanine metabolism";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Fatty acid beta-oxidation II (plant peroxisome)";"Methyl ketone biosynthesis (engineered)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Propanoate metabolism"
JAMg_model_8756.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_4623.1	1	Reactome: R-HSA-2559584	"Formation of Senescence-Associated Heterochromatin Foci (SAHF)"
JAMg_model_12325.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_21281.1	6	KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463	"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis"
JAMg_model_9858.2	5	Reactome: R-HSA-9614657;Reactome: R-HSA-2426168;Reactome: R-HSA-1989781;Reactome: R-HSA-381183;Reactome: R-HSA-380994	"FOXO-mediated transcription of cell death genes";"Activation of gene expression by SREBF (SREBP)";"PPARA activates gene expression";"ATF6 (ATF6-alpha) activates chaperone genes";"ATF4 activates genes in response to endoplasmic reticulum stress"
JAMg_model_12554.1	1	Reactome: R-HSA-420499	"Class C/3 (Metabotropic glutamate/pheromone receptors)"
JAMg_model_980.2	1	Reactome: R-HSA-8856828	"Clathrin-mediated endocytosis"
JAMg_model_3950.1	20	MetaCyc: PWY-7007;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7606;MetaCyc: PWY-7726;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7858;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7288;MetaCyc: PWY-7338;MetaCyc: PWY-7291;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-5136;Reactome: R-HSA-9033241;MetaCyc: PWY-7574;MetaCyc: PWY-7337;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6	"Methyl ketone biosynthesis (engineered)";"Propanoate metabolism";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"alpha-Linolenic acid metabolism";"(5Z)-dodecenoate biosynthesis II";"Fatty acid degradation";"Fatty acid beta-oxidation VII (yeast peroxisome)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Oleate beta-oxidation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Fatty acid beta-oxidation II (plant peroxisome)";"Peroxisomal protein import";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism"
JAMg_model_6825.1	2	Reactome: R-HSA-5683371;Reactome: R-HSA-1369007	"Defective ABCB6 causes isolated colobomatous microphthalmia 7 (MCOPCB7)";"Mitochondrial ABC transporters"
JAMg_model_2059.6	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_10024.4	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_19425.2	1	Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_15672.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_16666.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_7013.2	2	Reactome: R-HSA-5578998;Reactome: R-HSA-174403	"Defective OPLAH causes 5-oxoprolinase deficiency (OPLAHD)";"Glutathione synthesis and recycling"
JAMg_model_6018.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_13504.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_9755.3	2	Reactome: R-HSA-1483191;Reactome: R-HSA-425366	"Synthesis of PC";"Transport of bile salts and organic acids, metal ions and amine compounds"
JAMg_model_14641.1	1	Reactome: R-HSA-1614517	"Sulfide oxidation to sulfate"
JAMg_model_21260.4	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_8637.4	4	Reactome: R-HSA-4720454;KEGG: 00513+2.4.1.261;KEGG: 00510+2.4.1.259+2.4.1.261;Reactome: R-HSA-446193	"Defective ALG9 causes ALG9-CDG (CDG-1l)";"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein"
JAMg_model_8288.3	4	Reactome: R-HSA-9020702;Reactome: R-HSA-937039;MetaCyc: PWY-7511;Reactome: R-HSA-975144	"Interleukin-1 signaling";"IRAK1 recruits IKK complex";"Protein ubiquitination";"IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation"
JAMg_model_390.2	3	Reactome: R-HSA-72165;Reactome: R-HSA-72163;Reactome: R-HSA-5250924	"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway";"B-WICH complex positively regulates rRNA expression"
JAMg_model_14078.1	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_1257.1	3	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer"
JAMg_model_12633.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_18090.4	3	MetaCyc: PWY-6823;KEGG: 00790+4.1.99.22;Reactome: R-HSA-947581	"Molybdenum cofactor biosynthesis";"Folate biosynthesis";"Molybdenum cofactor biosynthesis"
JAMg_model_14676.1	1	Reactome: R-HSA-112126	"ALKBH3 mediated reversal of alkylation damage"
JAMg_model_5359.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_14764.1	1	Reactome: R-HSA-6811434	"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_13321.1	2	Reactome: R-HSA-379726;KEGG: 00970+6.1.1.1	"Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_10975.2	2	Reactome: R-HSA-6811436;Reactome: R-HSA-8876198	"COPI-independent Golgi-to-ER retrograde traffic";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_5197.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_15796.1	2	MetaCyc: PWY-6749;KEGG: 00520+5.4.2.10	"CMP-legionaminate biosynthesis I";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_12523.2	3	Reactome: R-HSA-1237112;MetaCyc: PWY-4361;KEGG: 00270+1.13.11.54	"Methionine salvage pathway";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism"
JAMg_model_19791.1	7	KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1	"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"mTOR signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway"
JAMg_model_12111.2	2	Reactome: R-HSA-1483115;Reactome: R-HSA-1483152	"Hydrolysis of LPC";"Hydrolysis of LPE"
JAMg_model_16889.1	6	Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733	"Wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis"
JAMg_model_7356.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_18024.2	2	Reactome: R-HSA-380270;Reactome: R-HSA-380320	"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_1117.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_14654.7	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_16845.1	3	Reactome: R-HSA-193648;Reactome: R-HSA-194840;Reactome: R-HSA-416482	"NRAGE signals death through JNK";"Rho GTPase cycle";"G alpha (12/13) signalling events"
JAMg_model_6375.4	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_8807.1	7	KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1	"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Thermogenesis";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection"
JAMg_model_9948.3	3	Reactome: R-HSA-5663213;Reactome: R-HSA-2029482;Reactome: R-HSA-4420097	"RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation";"VEGFA-VEGFR2 Pathway"
JAMg_model_12968.1	4	KEGG: 00600+3.5.1.23;MetaCyc: PWY-7119;MetaCyc: PWY-6483;Reactome: R-HSA-1660662	"Sphingolipid metabolism";"Ceramide and sphingolipid recycling and degradation (yeast)";"Ceramide degradation (generic)";"Glycosphingolipid metabolism"
JAMg_model_2588.1	2	Reactome: R-HSA-8949664;Reactome: R-HSA-8949215	"Processing of SMDT1";"Mitochondrial calcium ion transport"
JAMg_model_6941.2	1	Reactome: R-HSA-499943	"Interconversion of nucleotide di- and triphosphates"
JAMg_model_9194.1	6	KEGG: 00670+2.1.2.3;MetaCyc: PWY-7234;KEGG: 00230+3.5.4.10+2.1.2.3;Reactome: R-HSA-73817;MetaCyc: PWY-6123;MetaCyc: PWY-6124	"One carbon pool by folate";"Inosine-5'-phosphate biosynthesis III";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"Inosine-5'-phosphate biosynthesis I";"Inosine-5'-phosphate biosynthesis II"
JAMg_model_12727.1	1	Reactome: R-HSA-9609523	"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_1687.2	16	Reactome: R-HSA-141430;Reactome: R-HSA-2559582;Reactome: R-HSA-69017;Reactome: R-HSA-176412;Reactome: R-HSA-174084;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-176409;Reactome: R-HSA-174184;Reactome: R-HSA-174154;Reactome: R-HSA-8853884;Reactome: R-HSA-174178;Reactome: R-HSA-176408;Reactome: R-HSA-2467813;Reactome: R-HSA-179409;Reactome: R-HSA-983168	"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)";"CDK-mediated phosphorylation and removal of Cdc6";"Phosphorylation of the APC/C";"Autodegradation of Cdh1 by Cdh1:APC/C";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of Securin";"Transcriptional Regulation by VENTX";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Regulation of APC/C activators between G1/S and early anaphase";"Separation of Sister Chromatids";"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4517.1	10	Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-6807505;Reactome: R-HSA-6804756;Reactome: R-HSA-167162;Reactome: R-HSA-167172	"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA polymerase II transcribes snRNA genes";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome"
JAMg_model_5776.6	3	Reactome: R-HSA-1614603;Reactome: R-HSA-1614558;Reactome: R-HSA-2408508	"Cysteine formation from homocysteine";"Degradation of cysteine and homocysteine";"Metabolism of ingested SeMet, Sec, MeSec into H2Se"
JAMg_model_4565.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_2597.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_4900.1	24	Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-983189;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434	"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Kinesins";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_10920.1	28	Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-5358606;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-6782210;Reactome: R-HSA-69166;Reactome: R-HSA-176187;Reactome: R-HSA-912446;Reactome: R-HSA-3371511;Reactome: R-HSA-5696395;Reactome: R-HSA-5685938;Reactome: R-HSA-3371453;Reactome: R-HSA-110314;Reactome: R-HSA-6804756;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-6782135;Reactome: R-HSA-6783310;Reactome: R-HSA-5655862	"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Removal of the Flap Intermediate";"Activation of ATR in response to replication stress";"Meiotic recombination";"HSF1 activation";"Formation of Incision Complex in GG-NER";"HDR through Single Strand Annealing (SSA)";"Regulation of HSF1-mediated heat shock response";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Dual incision in TC-NER";"Fanconi Anemia Pathway";"Translesion synthesis by POLK"
JAMg_model_7189.1	12	Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648	"DCC mediated attractive signaling";"Human cytomegalovirus infection";"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Thermogenesis";"Rho GTPase cycle";"Human papillomavirus infection";"Relaxin signaling pathway";"G alpha (q) signalling events";"NRAGE signals death through JNK"
JAMg_model_7461.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_11757.3	6	Reactome: R-HSA-8874211;Reactome: R-HSA-381033;Reactome: R-HSA-381426;Reactome: R-HSA-8957275;Reactome: R-HSA-1655829;Reactome: R-HSA-8963889	"CREB3 factors activate genes";"ATF6 (ATF6-alpha) activates chaperones";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"Assembly of active LPL and LIPC lipase complexes"
JAMg_model_21191.1	1	Reactome: R-HSA-6811438	"Intra-Golgi traffic"
JAMg_model_11795.2	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_3952.1	16	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956	"Peptide chain elongation";"Viral mRNA Translation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_12326.1	24	Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-983189;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148	"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Kinesins";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_8298.7	4	Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-936837;Reactome: R-HSA-1912420	"Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Ion transport by P-type ATPases";"Pre-NOTCH Processing in Golgi"
JAMg_model_7624.2	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_8098.2	1	Reactome: R-HSA-163841	"Gamma carboxylation, hypusine formation and arylsulfatase activation"
JAMg_model_6375.6	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_15014.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_8375.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_7052.4	1	Reactome: R-HSA-196108	"Pregnenolone biosynthesis"
JAMg_model_3237.6	13	Reactome: R-HSA-167590;Reactome: R-HSA-2132295;Reactome: R-HSA-416993;Reactome: R-HSA-8866427;Reactome: R-HSA-182218;Reactome: R-HSA-8964038;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-177504;Reactome: R-HSA-5099900;Reactome: R-HSA-437239;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828	"Nef Mediated CD4 Down-regulation";"MHC class II antigen presentation";"Trafficking of GluR2-containing AMPA receptors";"VLDLR internalisation and degradation";"Nef Mediated CD8 Down-regulation";"LDL clearance";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Retrograde neurotrophin signalling";"WNT5A-dependent internalization of FZD4";"Recycling pathway of L1";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis"
JAMg_model_19167.2	11	MetaCyc: PWY-8051;KEGG: 00565+3.1.3.4;KEGG: 00561+3.1.3.4;Reactome: R-HSA-2029485;KEGG: 00600+3.1.3.4;MetaCyc: PWY-7782;MetaCyc: PWY-8053;MetaCyc: PWY-8052;KEGG: 00564+3.1.3.4;MetaCyc: PWY-8055;MetaCyc: PWY-6453	"Anandamide biosynthesis I";"Ether lipid metabolism";"Glycerolipid metabolism";"Role of phospholipids in phagocytosis";"Sphingolipid metabolism";"Plasmalogen biosynthesis";"Anandamide biosynthesis II";"2-arachidonoylglycerol biosynthesis";"Glycerophospholipid metabolism";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis"
JAMg_model_14335.1	19	MetaCyc: PWY-7726;MetaCyc: PWY-7606;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7007;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6;MetaCyc: PWY-7337;MetaCyc: PWY-7574;MetaCyc: PWY-5136;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-7291;MetaCyc: PWY-7338;MetaCyc: PWY-7288;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7858;KEGG: 00592+1.3.3.6	"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Propanoate metabolism";"Methyl ketone biosynthesis (engineered)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Propanoyl-coa degradation II";"Fatty acid beta-oxidation II (plant peroxisome)";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"Oleate beta-oxidation (isomerase-dependent, yeast)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Fatty acid degradation";"(5Z)-dodecenoate biosynthesis II";"alpha-Linolenic acid metabolism"
JAMg_model_12018.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_19244.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_7425.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_17851.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_15812.2	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_7862.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_7222.2	16	Reactome: R-HSA-9010553;Reactome: R-HSA-167238;Reactome: R-HSA-167152;Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-167200;Reactome: R-HSA-983168;Reactome: R-HSA-6796648;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-674695;Reactome: R-HSA-8951664	"Regulation of expression of SLITs and ROBOs";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Antigen processing: Ubiquitination & Proteasome degradation";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"RNA Polymerase II Pre-transcription Events";"Neddylation"
JAMg_model_18188.2	2	Reactome: R-HSA-204005;Reactome: R-HSA-8876198	"COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_7499.1	11	KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-3270619;KEGG: 05165+2.7.11.1;Reactome: R-HSA-8866654;KEGG: 04151+2.7.11.1;Reactome: R-HSA-5693571;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-1834949;KEGG: 05163+2.7.11.1	"Relaxin signaling pathway";"Thermogenesis";"IRF3-mediated induction of type I IFN";"Human papillomavirus infection";"E3 ubiquitin ligases ubiquitinate target proteins";"PI3K-Akt signaling pathway";"Nonhomologous End-Joining (NHEJ)";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Cytosolic sensors of pathogen-associated DNA";"Human cytomegalovirus infection"
JAMg_model_1263.1	5	Reactome: R-HSA-918233;Reactome: R-HSA-9013973;Reactome: R-HSA-936964;Reactome: R-HSA-936440;Reactome: R-HSA-933541	"TRAF3-dependent IRF activation pathway";"TICAM1-dependent activation of IRF3/IRF7";"Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon";"Negative regulators of DDX58/IFIH1 signaling";"TRAF6 mediated IRF7 activation"
JAMg_model_16739.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_5049.1	17	Reactome: R-HSA-5358565;Reactome: R-HSA-5696397;Reactome: R-HSA-174437;Reactome: R-HSA-5358606;Reactome: R-HSA-69183;Reactome: R-HSA-6782210;Reactome: R-HSA-174417;Reactome: R-HSA-69166;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-5696400;Reactome: R-HSA-6782135;Reactome: R-HSA-69091;Reactome: R-HSA-174414;Reactome: R-HSA-110314;Reactome: R-HSA-174411;Reactome: R-HSA-5651801	"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Processive synthesis on the lagging strand";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Telomere C-strand (Lagging Strand) Synthesis";"Removal of the Flap Intermediate";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Dual Incision in GG-NER";"Dual incision in TC-NER";"Polymerase switching";"Processive synthesis on the C-strand of the telomere";"Recognition of DNA damage by PCNA-containing replication complex";"Polymerase switching on the C-strand of the telomere";"PCNA-Dependent Long Patch Base Excision Repair"
JAMg_model_957.8	4	Reactome: R-HSA-983189;Reactome: R-HSA-5625970;Reactome: R-HSA-2132295;Reactome: R-HSA-6811434	"Kinesins";"RHO GTPases activate KTN1";"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_8168.1	1	KEGG: 00970+6.1.1.21	"Aminoacyl-tRNA biosynthesis"
JAMg_model_12301.1	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_583.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_3063.2	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_18058.1	1	Reactome: R-HSA-3238698	"WNT ligand biogenesis and trafficking"
JAMg_model_15662.1	13	MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;MetaCyc: PWY-6902;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-1660662;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2022857;Reactome: R-HSA-2024101	"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Chitin degradation II (Vibrio)";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Hyaluronan uptake and degradation";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation";"Anhydromuropeptides recycling II";"Glycosphingolipid metabolism";"Various types of N-glycan biosynthesis";"Keratan sulfate degradation";"CS/DS degradation"
JAMg_model_6542.1	2	Reactome: R-HSA-1296072;Reactome: R-HSA-5576894	"Voltage gated Potassium channels";"Phase 1 - inactivation of fast Na+ channels"
JAMg_model_16905.2	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_19962.2	16	Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553	"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Peptide chain elongation";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs"
JAMg_model_16243.3	1	Reactome: R-HSA-1483148	"Synthesis of PG"
JAMg_model_9520.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_17987.1	10	Reactome: R-HSA-73779;Reactome: R-HSA-3214847;Reactome: R-HSA-75953;Reactome: R-HSA-76042;Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-674695	"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"HATs acetylate histones";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_20213.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_8852.2	1	Reactome: R-HSA-8849932	"Synaptic adhesion-like molecules"
JAMg_model_6178.1	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_3952.2	16	Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695	"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Viral mRNA Translation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex"
JAMg_model_17739.2	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226	"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_9781.2	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_6589.2	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_13194.2	4	Reactome: R-HSA-70895;MetaCyc: PWY-5642;KEGG: 00640+1.2.1.27;KEGG: 00280+1.2.1.27	"Branched-chain amino acid catabolism";"2,4-dinitrotoluene degradation";"Propanoate metabolism";"Valine, leucine and isoleucine degradation"
JAMg_model_2672.1	5	Reactome: R-HSA-1834941;Reactome: R-HSA-6798695;Reactome: R-HSA-3270619;Reactome: R-HSA-3249367;Reactome: R-HSA-3134975	"STING mediated induction of host immune responses";"Neutrophil degranulation";"IRF3-mediated induction of type I IFN";"STAT6-mediated induction of chemokines";"Regulation of innate immune responses to cytosolic DNA"
JAMg_model_13056.4	13	Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764	"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"Viral mRNA Translation";"Peptide chain elongation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination"
JAMg_model_1575.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_3662.2	16	Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689	"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits"
JAMg_model_13391.1	13	Reactome: R-HSA-983695;Reactome: R-HSA-139853;Reactome: R-HSA-114508;Reactome: R-HSA-112043;Reactome: R-HSA-5607763;Reactome: R-HSA-4086398;Reactome: R-HSA-2029485;Reactome: R-HSA-5578775;Reactome: R-HSA-2871809;Reactome: R-HSA-381676;Reactome: R-HSA-422356;Reactome: R-HSA-5218921;Reactome: R-HSA-1489509	"Antigen activates B Cell Receptor (BCR) leading to generation of second messengers";"Elevation of cytosolic Ca2+ levels";"Effects of PIP2 hydrolysis";"PLC beta mediated events";"CLEC7A (Dectin-1) induces NFAT activation";"Ca2+ pathway";"Role of phospholipids in phagocytosis";"Ion homeostasis";"FCERI mediated Ca+2 mobilization";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Regulation of insulin secretion";"VEGFR2 mediated cell proliferation";"DAG and IP3 signaling"
JAMg_model_20907.1	9	Reactome: R-HSA-2022928;Reactome: R-HSA-2024096;Reactome: R-HSA-1971475;Reactome: R-HSA-3560783;Reactome: R-HSA-975634;Reactome: R-HSA-3656237;Reactome: R-HSA-4420332;Reactome: R-HSA-3656253;Reactome: R-HSA-3560801	"HS-GAG biosynthesis";"HS-GAG degradation";"A tetrasaccharide linker sequence is required for GAG synthesis";"Defective B4GALT7 causes EDS, progeroid type";"Retinoid metabolism and transport";"Defective EXT2 causes exostoses 2";"Defective B3GALT6 causes EDSP2 and SEMDJL1";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"Defective B3GAT3 causes JDSSDHD"
JAMg_model_14769.2	2	Reactome: R-HSA-212676;Reactome: R-HSA-181429	"Dopamine Neurotransmitter Release Cycle";"Serotonin Neurotransmitter Release Cycle"
JAMg_model_7883.1	1	Reactome: R-HSA-2565942	"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_7193.2	4	Reactome: R-HSA-5688399;Reactome: R-HSA-5683826;Reactome: R-HSA-1369062;Reactome: R-HSA-5683678	"Defective ABCA3 causes pulmonary surfactant metabolism dysfunction 3 (SMDP3)";"Surfactant metabolism";"ABC transporters in lipid homeostasis";"Defective ABCA3 causes pulmonary surfactant metabolism dysfunction type 3 (SMDP3)"
JAMg_model_5764.3	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_10656.1	3	Reactome: R-HSA-9645722;Reactome: R-HSA-111471;Reactome: R-HSA-140837	"Defective Intrinsic Pathway for Apoptosis Due to p14ARF Loss of Function";"Apoptotic factor-mediated response";"Intrinsic Pathway of Fibrin Clot Formation"
JAMg_model_21255.1	25	Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-983189;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-380270;Reactome: R-HSA-8955332;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497	"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"Kinesins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Recruitment of mitotic centrosome proteins and complexes";"Carboxyterminal post-translational modifications of tubulin";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)"
JAMg_model_11252.1	9	KEGG: 00564+1.1.1.94;KEGG: 00564+1.1.1.8;MetaCyc: PWY-7385;MetaCyc: PWY-7411;Reactome: R-HSA-1483166;MetaCyc: PWY-7902;MetaCyc: PWY-5667;MetaCyc: PWY-6118;MetaCyc: PWY-5981	"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"1,3-propanediol biosynthesis (engineered)";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"Glucosylglycerol biosynthesis";"CDP-diacylglycerol biosynthesis I";"Glycerol-3-phosphate shuttle";"CDP-diacylglycerol biosynthesis III"
JAMg_model_21285.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_10868.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_9533.1	8	MetaCyc: PWY-6372;MetaCyc: PWY-6664;KEGG: 00562+5.5.1.4;KEGG: 00521+5.5.1.4;Reactome: R-HSA-1855183;MetaCyc: PWY-4661;MetaCyc: PWY-6580;MetaCyc: PWY-2301	"1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)";"Di-myo-inositol phosphate biosynthesis";"Inositol phosphate metabolism";"Streptomycin biosynthesis";"Synthesis of IP2, IP, and Ins in the cytosol";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)";"Phosphatidylinositol biosynthesis I (bacteria)";"Myo-inositol biosynthesis"
JAMg_model_19003.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_2802.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_3407.1	6	Reactome: R-HSA-5693607;Reactome: R-HSA-6804756;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-176187;Reactome: R-HSA-5685938	"Processing of DNA double-strand break ends";"Regulation of TP53 Activity through Phosphorylation";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Activation of ATR in response to replication stress";"HDR through Single Strand Annealing (SSA)"
JAMg_model_5369.1	1	Reactome: R-HSA-3214815	"HDACs deacetylate histones"
JAMg_model_10724.1	1	Reactome: R-HSA-70921	"Histidine catabolism"
JAMg_model_19743.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_18933.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_12573.6	18	KEGG: 00630+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-5392;MetaCyc: PWY-7115;KEGG: 00680+1.1.1.37;KEGG: 00620+1.1.1.37;MetaCyc: PWY-6728;MetaCyc: PWY-5913;MetaCyc: PWY-6969;KEGG: 00270+1.1.1.37;KEGG: 00720+1.1.1.37;Reactome: R-HSA-70263;MetaCyc: PWY-5690;KEGG: 00710+1.1.1.37;MetaCyc: PWY-1622;KEGG: 00020+1.1.1.37;MetaCyc: PWY-561;MetaCyc: PWY-7383	"Glyoxylate and dicarboxylate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Reductive TCA cycle II";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Methane metabolism";"Pyruvate metabolism";"Methylaspartate cycle";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Cysteine and methionine metabolism";"Carbon fixation pathways in prokaryotes";"Gluconeogenesis";"TCA cycle II (plants and fungi)";"Carbon fixation in photosynthetic organisms";"Formaldehyde assimilation I (serine pathway)";"Citrate cycle (TCA cycle)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Anaerobic energy metabolism (invertebrates, cytosol)"
JAMg_model_11794.1	2	Reactome: R-HSA-6807878;Reactome: R-HSA-445095	"COPI-mediated anterograde transport";"Interaction between L1 and Ankyrins"
JAMg_model_17015.1	1	Reactome: R-HSA-5689880	"Ub-specific processing proteases"
JAMg_model_8709.2	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_1642.1	3	Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing"
JAMg_model_13545.5	1	Reactome: R-HSA-381753	"Olfactory Signaling Pathway"
JAMg_model_7836.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_14430.1	5	KEGG: 00520+3.2.1.14;MetaCyc: PWY-7822;MetaCyc: PWY-6902;Reactome: R-HSA-189085;MetaCyc: PWY-6855	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Digestion of dietary carbohydrate";"Chitin degradation I (archaea)"
JAMg_model_12909.2	6	MetaCyc: PWY-5530;KEGG: 00053+3.1.1.17;KEGG: 00930+3.1.1.17;KEGG: 00030+3.1.1.17;MetaCyc: PWY-7165;MetaCyc: PWY-2221	"Sorbitol biosynthesis II";"Ascorbate and aldarate metabolism";"Caprolactam degradation";"Pentose phosphate pathway";"L-ascorbate biosynthesis VI (engineered pathway)";"Entner-Doudoroff pathway III (semi-phosphorylative)"
JAMg_model_8940.3	5	Reactome: R-HSA-9633012;Reactome: R-HSA-9648895;KEGG: 00250+6.3.5.4;Reactome: R-HSA-380994;Reactome: R-HSA-8963693	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Response of EIF2AK1 (HRI) to heme deficiency";"Alanine, aspartate and glutamate metabolism";"ATF4 activates genes in response to endoplasmic reticulum stress";"Aspartate and asparagine metabolism"
JAMg_model_11256.1	1	Reactome: R-HSA-110320	"Translesion Synthesis by POLH"
JAMg_model_2162.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_3981.3	2	KEGG: 00627+3.6.1.7;KEGG: 00620+3.6.1.7	"Aminobenzoate degradation";"Pyruvate metabolism"
JAMg_model_9797.8	1	Reactome: R-HSA-191273	"Cholesterol biosynthesis"
JAMg_model_8132.1	6	MetaCyc: PWY-6906;MetaCyc: PWY-5514;KEGG: 00520+5.4.2.3;KEGG: 00520+5.4.2.10;Reactome: R-HSA-446210;MetaCyc: PWY-6749	"Chitin derivatives degradation";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Amino sugar and nucleotide sugar metabolism";"Amino sugar and nucleotide sugar metabolism";"Synthesis of UDP-N-acetyl-glucosamine";"CMP-legionaminate biosynthesis I"
JAMg_model_3210.2	1	Reactome: R-HSA-69231	"Cyclin D associated events in G1"
JAMg_model_16126.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_19491.7	4	Reactome: R-HSA-1362409;Reactome: R-HSA-947581;MetaCyc: PWY-7250;KEGG: 00730+2.8.1.7	"Mitochondrial iron-sulfur cluster biogenesis";"Molybdenum cofactor biosynthesis";"[2Fe-2S] iron-sulfur cluster biosynthesis";"Thiamine metabolism"
JAMg_model_10021.6	4	Reactome: R-HSA-1855183;KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;KEGG: 00053+1.13.99.1	"Synthesis of IP2, IP, and Ins in the cytosol";"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Ascorbate and aldarate metabolism"
JAMg_model_6941.4	1	Reactome: R-HSA-499943	"Interconversion of nucleotide di- and triphosphates"
JAMg_model_12861.1	2	Reactome: R-HSA-5610787;Reactome: R-HSA-5620924	"Hedgehog 'off' state";"Intraflagellar transport"
JAMg_model_7514.1	4	Reactome: R-HSA-112382;Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-8866654	"Formation of RNA Pol II elongation complex";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_1151.1	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_17694.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_5267.1	4	KEGG: 00230+2.7.4.3;Reactome: R-HSA-499943;KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219	"Purine metabolism";"Interconversion of nucleotide di- and triphosphates";"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis"
JAMg_model_18122.1	7	KEGG: 04070+3.1.4.11;MetaCyc: PWY-7039;MetaCyc: PWY-6351;MetaCyc: PWY-8052;MetaCyc: PWY-6367;Reactome: R-HSA-1855204;KEGG: 00562+3.1.4.11	"Phosphatidylinositol signaling system";"Phosphatidate metabolism, as a signaling molecule";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"D-myo-inositol-5-phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"Inositol phosphate metabolism"
JAMg_model_17468.1	1	Reactome: R-HSA-6785631	"ERBB2 Regulates Cell Motility"
JAMg_model_8693.1	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_14158.3	6	Reactome: R-HSA-975634;Reactome: R-HSA-6798695;Reactome: R-HSA-3000171;Reactome: R-HSA-2453864;Reactome: R-HSA-2453902;Reactome: R-HSA-977225	"Retinoid metabolism and transport";"Neutrophil degranulation";"Non-integrin membrane-ECM interactions";"Retinoid cycle disease events";"The canonical retinoid cycle in rods (twilight vision)";"Amyloid fiber formation"
JAMg_model_10817.5	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_4961.4	5	Reactome: R-HSA-6807004;Reactome: R-HSA-8856828;Reactome: R-HSA-8875360;Reactome: R-HSA-8856825;Reactome: R-HSA-182971	"Negative regulation of MET activity";"Clathrin-mediated endocytosis";"InlB-mediated entry of Listeria monocytogenes into host cell";"Cargo recognition for clathrin-mediated endocytosis";"EGFR downregulation"
JAMg_model_15016.1	1	Reactome: R-HSA-9603798	"Class I peroxisomal membrane protein import"
JAMg_model_10409.1	3	Reactome: R-HSA-6811440;Reactome: R-HSA-8876198;Reactome: R-HSA-6811438	"Retrograde transport at the Trans-Golgi-Network";"RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic"
JAMg_model_7182.1	1	Reactome: R-HSA-389977	"Post-chaperonin tubulin folding pathway"
JAMg_model_17337.1	1	Reactome: R-HSA-6811438	"Intra-Golgi traffic"
JAMg_model_2063.1	30	Reactome: R-HSA-75953;Reactome: R-HSA-112382;Reactome: R-HSA-73762;Reactome: R-HSA-6796648;Reactome: R-HSA-5696395;Reactome: R-HSA-167200;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-6782135;Reactome: R-HSA-2564830;Reactome: R-HSA-6781827;Reactome: R-HSA-674695;Reactome: R-HSA-73772;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-5696400;Reactome: R-HSA-72086;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-73863;Reactome: R-HSA-76042;Reactome: R-HSA-6781823;Reactome: R-HSA-167162;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167172;Reactome: R-HSA-167246;Reactome: R-HSA-75955;Reactome: R-HSA-77075;Reactome: R-HSA-6782210	"RNA Polymerase II Transcription Initiation";"Formation of RNA Pol II elongation complex";"RNA Polymerase I Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of Incision Complex in GG-NER";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"Dual incision in TC-NER";"Cytosolic iron-sulfur cluster assembly";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"Dual Incision in GG-NER";"mRNA Capping";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase I Transcription Termination";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase II HIV Promoter Escape";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Transcription of the HIV genome";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Elongation";"RNA Pol II CTD phosphorylation and interaction with CE";"Gap-filling DNA repair synthesis and ligation in TC-NER"
JAMg_model_18526.1	1	Reactome: R-HSA-429958	"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_14123.1	6	Reactome: R-HSA-5609978;MetaCyc: PWY-6527;KEGG: 00520+2.7.7.12;KEGG: 00052+2.7.7.12;MetaCyc: PWY-6317;Reactome: R-HSA-70370	"Defective GALT can cause Galactosemia";"Stachyose degradation";"Amino sugar and nucleotide sugar metabolism";"Galactose metabolism";"D-galactose degradation I (Leloir pathway)";"Galactose catabolism"
JAMg_model_4350.2	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_9015.1	13	Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Viral mRNA Translation";"Peptide chain elongation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_3471.1	3	MetaCyc: PWY-6987;MetaCyc: PWY-7382;KEGG: 00785+2.3.1.181	"Lipoate biosynthesis and incorporation III (Bacillus)";"Lipoate biosynthesis and incorporation IV (yeast)";"Lipoic acid metabolism"
JAMg_model_16125.2	3	Reactome: R-HSA-6784531;Reactome: R-HSA-8868766;Reactome: R-HSA-6785470	"tRNA processing in the nucleus";"rRNA processing in the mitochondrion";"tRNA processing in the mitochondrion"
JAMg_model_8098.4	1	Reactome: R-HSA-163841	"Gamma carboxylation, hypusine formation and arylsulfatase activation"
JAMg_model_3665.1	7	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection"
JAMg_model_20393.1	7	Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_6806.1	1	Reactome: R-HSA-5635838	"Activation of SMO"
JAMg_model_9236.1	1	Reactome: R-HSA-352230	"Amino acid transport across the plasma membrane"
JAMg_model_8834.1	10	MetaCyc: PWY-7511;Reactome: R-HSA-76042;Reactome: R-HSA-75953;Reactome: R-HSA-73779;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756	"Protein ubiquitination";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_20695.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_16208.2	5	Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-75105;Reactome: R-HSA-2426168;Reactome: R-HSA-9029558	"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"Fatty acyl-CoA biosynthesis";"Activation of gene expression by SREBF (SREBP)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_2273.5	2	KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981	"Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis"
JAMg_model_11335.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_3430.1	1	Reactome: R-HSA-381038	"XBP1(S) activates chaperone genes"
JAMg_model_2846.1	1	Reactome: R-HSA-5658442	"Regulation of RAS by GAPs"
JAMg_model_18048.4	5	Reactome: R-HSA-70171;MetaCyc: PWY-6906;MetaCyc: PWY-5514;MetaCyc: PWY-6855;KEGG: 00520+3.5.99.6	"Glycolysis";"Chitin derivatives degradation";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Chitin degradation I (archaea)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_16516.1	10	MetaCyc: PWY-6807;Reactome: R-HSA-2160916;Reactome: R-HSA-2206292;Reactome: R-HSA-2024096;KEGG: 00511+3.2.1.23;KEGG: 00052+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00531+3.2.1.23	"Xyloglucan degradation II (exoglucanase)";"Hyaluronan uptake and degradation";"MPS VII - Sly syndrome";"HS-GAG degradation";"Other glycan degradation";"Galactose metabolism";"Neutrophil degranulation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Glycosaminoglycan degradation"
JAMg_model_16624.2	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_4554.1	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_7757.1	1	Reactome: R-HSA-418594	"G alpha (i) signalling events"
JAMg_model_14715.1	2	Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_17786.1	2	Reactome: R-HSA-389661;KEGG: 00785+6.3.1.20	"Glyoxylate metabolism and glycine degradation";"Lipoic acid metabolism"
JAMg_model_12587.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_14896.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_7638.2	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_3815.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_6484.3	10	Reactome: R-HSA-5685938;Reactome: R-HSA-5693554;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-3108214;Reactome: R-HSA-5693568;Reactome: R-HSA-6804756;Reactome: R-HSA-5693607;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942	"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"SUMOylation of DNA damage response and repair proteins";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)"
JAMg_model_872.1	4	MetaCyc: PWY-7805;KEGG: 00190+3.6.1.1;Reactome: R-HSA-71737;MetaCyc: PWY-7807	"(aminomethyl)phosphonate degradation";"Oxidative phosphorylation";"Pyrophosphate hydrolysis";"Glyphosate degradation III"
JAMg_model_13215.1	32	Reactome: R-HSA-174437;Reactome: R-HSA-68962;Reactome: R-HSA-5693616;Reactome: R-HSA-5358565;Reactome: R-HSA-110320;Reactome: R-HSA-5685942;Reactome: R-HSA-69166;Reactome: R-HSA-912446;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-3371453;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-5655862;Reactome: R-HSA-69473;Reactome: R-HSA-5358606;Reactome: R-HSA-201722;Reactome: R-HSA-5696397;Reactome: R-HSA-5656169;Reactome: R-HSA-5693607;Reactome: R-HSA-5689880;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-3214847;Reactome: R-HSA-3371511;Reactome: R-HSA-5696395;Reactome: R-HSA-6804756;Reactome: R-HSA-110314;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-6782135;Reactome: R-HSA-6783310	"Removal of the Flap Intermediate from the C-strand";"Activation of the pre-replicative complex";"Presynaptic phase of homologous DNA pairing and strand exchange";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Translesion Synthesis by POLH";"HDR through Homologous Recombination (HRR)";"Removal of the Flap Intermediate";"Meiotic recombination";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Regulation of HSF1-mediated heat shock response";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Translesion synthesis by POLK";"G2/M DNA damage checkpoint";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Formation of the beta-catenin:TCF transactivating complex";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Termination of translesion DNA synthesis";"Processing of DNA double-strand break ends";"Ub-specific processing proteases";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"HATs acetylate histones";"HSF1 activation";"Formation of Incision Complex in GG-NER";"Regulation of TP53 Activity through Phosphorylation";"Recognition of DNA damage by PCNA-containing replication complex";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"Dual incision in TC-NER";"Fanconi Anemia Pathway"
JAMg_model_19224.2	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_3197.2	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_11151.1	13	Reactome: R-HSA-9649948;KEGG: 05163+2.7.11.1;Reactome: R-HSA-5674135;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-6802948;Reactome: R-HSA-6802952;Reactome: R-HSA-6802946;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-6802955	"Signaling downstream of RAS mutants";"Human cytomegalovirus infection";"MAP2K and MAPK activation";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Signaling by high-kinase activity BRAF mutants";"Signaling by BRAF and RAF fusions";"Signaling by moderate kinase activity BRAF mutants";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"Paradoxical activation of RAF signaling by kinase inactive BRAF"
JAMg_model_15093.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_8515.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_21355.3	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_4734.1	1	Reactome: R-HSA-211945	"Phase I - Functionalization of compounds"
JAMg_model_1096.4	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_3438.2	3	Reactome: R-HSA-2129379;Reactome: R-HSA-1566948;Reactome: R-HSA-1474228	"Molecules associated with elastic fibres";"Elastic fibre formation";"Degradation of the extracellular matrix"
JAMg_model_21179.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_14961.6	4	Reactome: R-HSA-389661;KEGG: 00785+2.8.1.8;MetaCyc: PWY-6987;MetaCyc: PWY-7382	"Glyoxylate metabolism and glycine degradation";"Lipoic acid metabolism";"Lipoate biosynthesis and incorporation III (Bacillus)";"Lipoate biosynthesis and incorporation IV (yeast)"
JAMg_model_1646.1	6	MetaCyc: PWY-6807;KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23	"Xyloglucan degradation II (exoglucanase)";"Galactose metabolism";"Other glycan degradation";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism"
JAMg_model_1150.1	5	Reactome: R-HSA-389661;KEGG: 00020+1.2.4.2;KEGG: 00380+1.2.4.2;KEGG: 00310+1.2.4.2;MetaCyc: PWY-5084	"Glyoxylate metabolism and glycine degradation";"Citrate cycle (TCA cycle)";"Tryptophan metabolism";"Lysine degradation";"2-oxoglutarate decarboxylation to succinyl-CoA"
JAMg_model_13393.2	13	Reactome: R-HSA-381676;Reactome: R-HSA-422356;Reactome: R-HSA-5218921;Reactome: R-HSA-1489509;Reactome: R-HSA-983695;Reactome: R-HSA-139853;Reactome: R-HSA-114508;Reactome: R-HSA-112043;Reactome: R-HSA-5607763;Reactome: R-HSA-4086398;Reactome: R-HSA-2029485;Reactome: R-HSA-5578775;Reactome: R-HSA-2871809	"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Regulation of insulin secretion";"VEGFR2 mediated cell proliferation";"DAG and IP3 signaling";"Antigen activates B Cell Receptor (BCR) leading to generation of second messengers";"Elevation of cytosolic Ca2+ levels";"Effects of PIP2 hydrolysis";"PLC beta mediated events";"CLEC7A (Dectin-1) induces NFAT activation";"Ca2+ pathway";"Role of phospholipids in phagocytosis";"Ion homeostasis";"FCERI mediated Ca+2 mobilization"
JAMg_model_13503.1	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_7371.1	2	Reactome: R-HSA-1369062;Reactome: R-HSA-9603798	"ABC transporters in lipid homeostasis";"Class I peroxisomal membrane protein import"
JAMg_model_2708.1	1	Reactome: R-HSA-2995383	"Initiation of Nuclear Envelope Reformation"
JAMg_model_8550.3	14	MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7725;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-5080;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036;MetaCyc: PWY-7035;MetaCyc: PWY-5972;Reactome: R-HSA-75876	"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Synthesis of very long-chain fatty acyl-CoAs"
JAMg_model_15441.8	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_16767.1	2	KEGG: 00710+2.7.1.14;Reactome: R-HSA-71336	"Carbon fixation in photosynthetic organisms";"Pentose phosphate pathway"
JAMg_model_17246.1	4	Reactome: R-HSA-70263;KEGG: 00010+3.1.3.9;KEGG: 00500+3.1.3.9;KEGG: 00052+3.1.3.9	"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Starch and sucrose metabolism";"Galactose metabolism"
JAMg_model_18299.3	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_12370.1	6	MetaCyc: PWY-5743;MetaCyc: PWY-6722;Reactome: R-HSA-196780;MetaCyc: PWY-4381;MetaCyc: PWY-5744;MetaCyc: PWY-5789	"3-hydroxypropanoate cycle";"Candicidin biosynthesis";"Biotin transport and metabolism";"Fatty acid biosynthesis initiation (bacteria and plants)";"Glyoxylate assimilation";"3-hydroxypropanoate/4-hydroxybutanate cycle"
JAMg_model_20442.1	4	Reactome: R-HSA-2467813;Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Resolution of Sister Chromatid Cohesion"
JAMg_model_12391.5	7	KEGG: 00562+2.7.8.11;KEGG: 04070+2.7.8.11;MetaCyc: PWY-6352;Reactome: R-HSA-1483226;KEGG: 00564+2.7.8.11;MetaCyc: PWY-7625;MetaCyc: PWY-6351	"Inositol phosphate metabolism";"Phosphatidylinositol signaling system";"3-phosphoinositide biosynthesis";"Synthesis of PI";"Glycerophospholipid metabolism";"Phosphatidylinositol biosynthesis II (eukaryotes)";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis"
JAMg_model_9141.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_897.1	3	Reactome: R-HSA-2142691;MetaCyc: PWY-7533;Reactome: R-HSA-5423646	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification"
JAMg_model_17450.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_8092.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_14518.4	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_293.1	3	KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16	"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway"
JAMg_model_10609.1	5	KEGG: 00520+2.6.1.16;MetaCyc: PWY-6749;Reactome: R-HSA-446210;KEGG: 00250+2.6.1.16;MetaCyc: PWY-8013	"Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I";"Synthesis of UDP-N-acetyl-glucosamine";"Alanine, aspartate and glutamate metabolism";"UDP-N-acetyl-D-galactosamine biosynthesis III"
JAMg_model_1329.1	1	Reactome: R-HSA-420499	"Class C/3 (Metabotropic glutamate/pheromone receptors)"
JAMg_model_17299.1	11	MetaCyc: PWY-6992;MetaCyc: PWY-7586;Reactome: R-HSA-4043916;KEGG: 00051+5.3.1.8;KEGG: 00520+5.3.1.8;Reactome: R-HSA-446205;MetaCyc: PWY-3881;MetaCyc: PWY-7456;MetaCyc: PWY-5659;MetaCyc: PWY-3861;MetaCyc: PWY-882	"1,5-anhydrofructose degradation";"Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation";"Defective MPI causes MPI-CDG (CDG-1b)";"Fructose and mannose metabolism";"Amino sugar and nucleotide sugar metabolism";"Synthesis of GDP-mannose";"Mannitol biosynthesis";"Beta-(1,4)-mannan degradation";"GDP-mannose biosynthesis";"Mannitol degradation II";"L-ascorbate biosynthesis I (L-galactose pathway)"
JAMg_model_480.2	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_5030.3	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_1733.1	1	KEGG: 00970+6.1.1.16	"Aminoacyl-tRNA biosynthesis"
JAMg_model_18904.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_21214.1	40	MetaCyc: PWY-6946;MetaCyc: PWY-7094;MetaCyc: PWY-6863;MetaCyc: PWY-7654;KEGG: 00062+4.2.1.17+1.1.1.35;MetaCyc: PWY-5136;MetaCyc: PWY-6435;KEGG: 00650+4.2.1.17+1.1.1.35;MetaCyc: PWY-6945;MetaCyc: PWY-7778;MetaCyc: PWY-1361;KEGG: 00623+1.1.1.35;KEGG: 00640+4.2.1.17;KEGG: 00281+4.2.1.17+1.1.1.35;KEGG: 00930+4.2.1.17+1.1.1.35;MetaCyc: PWY-7606;MetaCyc: PWY-7779;MetaCyc: PWY-7216;KEGG: 00720+4.2.1.17+1.1.1.35;MetaCyc: PWY-7656;MetaCyc: PWY-6883;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-5789;KEGG: 00310+4.2.1.17+1.1.1.35;KEGG: 00360+4.2.1.17;KEGG: 00627+4.2.1.17;KEGG: 00410+4.2.1.17;MetaCyc: PWY-5177;MetaCyc: PWY-6583;MetaCyc: PWY-5138;MetaCyc: PWY-6944;KEGG: 00903+4.2.1.17;MetaCyc: PWY-7007;KEGG: 00362+4.2.1.17+1.1.1.35;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-5109;MetaCyc: PWY-7726;MetaCyc: PWY-7401;KEGG: 00071+4.2.1.17+1.1.1.35;KEGG: 00592+4.2.1.17	"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Fatty acid salvage";"Pyruvate fermentation to hexanol (engineered)";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Fatty acid elongation";"Fatty acid beta-oxidation II (plant peroxisome)";"4-hydroxybenzoate biosynthesis III (plants)";"Butanoate metabolism";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"2-methylpropene degradation";"Benzoyl-coa degradation I (aerobic)";"Toluene degradation";"Propanoate metabolism";"Geraniol degradation";"Caprolactam degradation";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Methyl tert-butyl ether degradation";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Carbon fixation pathways in prokaryotes";"Spodoptera littoralis pheromone biosynthesis";"Pyruvate fermentation to butanol II (engineered)";"Valine, leucine and isoleucine degradation";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Lysine degradation";"Phenylalanine metabolism";"Aminobenzoate degradation";"beta-Alanine metabolism";"Glutaryl-coa degradation";"Pyruvate fermentation to butanol I";"Fatty acid beta-oxidation IV (unsaturated, even number)";"Androstenedione degradation";"Limonene and pinene degradation";"Methyl ketone biosynthesis (engineered)";"Benzoate degradation";"Tryptophan metabolism";"Fermentation to 2-methylbutanoate";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"Fatty acid degradation";"alpha-Linolenic acid metabolism"
JAMg_model_3397.1	11	Reactome: R-HSA-9018519;Reactome: R-HSA-1989781;Reactome: R-HSA-212436;Reactome: R-HSA-400253;Reactome: R-HSA-383280;Reactome: R-HSA-1368082;Reactome: R-HSA-2426168;Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-2151201;Reactome: R-HSA-1368108	"Estrogen-dependent gene expression";"PPARA activates gene expression";"Generic Transcription Pathway";"Circadian Clock";"Nuclear Receptor transcription pathway";"RORA activates gene expression";"Activation of gene expression by SREBF (SREBP)";"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"Transcriptional activation of mitochondrial biogenesis";"BMAL1:CLOCK,NPAS2 activates circadian gene expression"
JAMg_model_19237.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_12827.2	2	Reactome: R-HSA-6783310;Reactome: R-HSA-5693568	"Fanconi Anemia Pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_11835.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_20334.2	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_14802.2	1	Reactome: R-HSA-9609523	"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_12677.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_5587.3	2	Reactome: R-HSA-445095;Reactome: R-HSA-6807878	"Interaction between L1 and Ankyrins";"COPI-mediated anterograde transport"
JAMg_model_16474.5	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_6052.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_10684.1	1	Reactome: R-HSA-913709	"O-linked glycosylation of mucins"
JAMg_model_9299.1	1	Reactome: R-HSA-5689603	"UCH proteinases"
JAMg_model_11352.3	2	KEGG: 00670+2.1.2.10;KEGG: 00260+2.1.2.10	"One carbon pool by folate";"Glycine, serine and threonine metabolism"
JAMg_model_9900.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_20006.2	5	Reactome: R-HSA-6811434;Reactome: R-HSA-6811438;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-204005	"COPI-dependent Golgi-to-ER retrograde traffic";"Intra-Golgi traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"COPII-mediated vesicle transport"
JAMg_model_6941.1	1	Reactome: R-HSA-499943	"Interconversion of nucleotide di- and triphosphates"
JAMg_model_15526.2	7	KEGG: 00230+3.6.1.15;MetaCyc: PWY-7198;MetaCyc: PWY-7184;KEGG: 00730+3.6.1.15;MetaCyc: PWY-7185;MetaCyc: PWY-6545;MetaCyc: PWY-7210	"Purine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Thiamine metabolism";"UTP and CTP dephosphorylation I";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotides biosynthesis from CTP"
JAMg_model_14998.1	3	KEGG: 00230+3.6.1.17;KEGG: 00240+3.6.1.17;Reactome: R-HSA-3299685	"Purine metabolism";"Pyrimidine metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_2105.1	1	Reactome: R-HSA-419771	"Opsins"
JAMg_model_4998.3	1	Reactome: R-HSA-162658	"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_20961.1	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_1674.1	2	Reactome: R-HSA-72163;Reactome: R-HSA-72165	"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_13671.2	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_10817.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_18119.1	7	MetaCyc: PWY-7221;MetaCyc: PWY-5695;KEGG: 00230+1.1.1.205;Reactome: R-HSA-73817;Reactome: R-HSA-6798695;MetaCyc: PWY-6596;KEGG: 00983+1.1.1.205	"Guanosine ribonucleotides de novo biosynthesis";"Inosine 5'-phosphate degradation";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"Neutrophil degranulation";"Adenosine nucleotides degradation I";"Drug metabolism - other enzymes"
JAMg_model_2182.1	4	Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-350054;Reactome: R-HSA-2644606	"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_16589.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_2602.2	1	Reactome: R-HSA-1971475	"A tetrasaccharide linker sequence is required for GAG synthesis"
JAMg_model_19272.5	2	Reactome: R-HSA-70921;KEGG: 00340+2.1.1.22	"Histidine catabolism";"Histidine metabolism"
JAMg_model_5689.5	2	Reactome: R-HSA-191859;Reactome: R-HSA-6807505	"snRNP Assembly";"RNA polymerase II transcribes snRNA genes"
JAMg_model_14338.5	5	Reactome: R-HSA-2022857;Reactome: R-HSA-2206305;Reactome: R-HSA-432720;KEGG: 00531+3.1.6.14;Reactome: R-HSA-6798695	"Keratan sulfate degradation";"MPS IIID - Sanfilippo syndrome D";"Lysosome Vesicle Biogenesis";"Glycosaminoglycan degradation";"Neutrophil degranulation"
JAMg_model_16329.2	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_15707.1	6	MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733	"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis"
JAMg_model_16460.1	2	KEGG: 00500+2.4.1.15;Reactome: R-HSA-446205	"Starch and sucrose metabolism";"Synthesis of GDP-mannose"
JAMg_model_7190.4	12	Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1	"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection";"DCC mediated attractive signaling";"Human cytomegalovirus infection";"Rho GTPase cycle";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"G alpha (q) signalling events";"NRAGE signals death through JNK";"PI3K-Akt signaling pathway";"mTOR signaling pathway"
JAMg_model_1025.1	5	KEGG: 00380+1.2.4.2;KEGG: 00020+1.2.4.2;KEGG: 00310+1.2.4.2;MetaCyc: PWY-5084;Reactome: R-HSA-389661	"Tryptophan metabolism";"Citrate cycle (TCA cycle)";"Lysine degradation";"2-oxoglutarate decarboxylation to succinyl-CoA";"Glyoxylate metabolism and glycine degradation"
JAMg_model_15869.1	1	Reactome: R-HSA-1483191	"Synthesis of PC"
JAMg_model_6484.1	10	Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693607;Reactome: R-HSA-6804756;Reactome: R-HSA-5693568;Reactome: R-HSA-3108214;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938	"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Processing of DNA double-strand break ends";"Regulation of TP53 Activity through Phosphorylation";"Resolution of D-loop Structures through Holliday Junction Intermediates";"SUMOylation of DNA damage response and repair proteins";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)"
JAMg_model_4116.9	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_1216.4	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_16533.1	2	Reactome: R-HSA-5694530;Reactome: R-HSA-204005	"Cargo concentration in the ER";"COPII-mediated vesicle transport"
JAMg_model_4151.1	2	Reactome: R-HSA-499943;KEGG: 00450+1.8.1.9	"Interconversion of nucleotide di- and triphosphates";"Selenocompound metabolism"
JAMg_model_8803.3	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_1335.2	7	MetaCyc: PWY-7511;Reactome: R-HSA-9013507;Reactome: R-HSA-2894862;Reactome: R-HSA-2979096;Reactome: R-HSA-2122948;Reactome: R-HSA-2691232;Reactome: R-HSA-2644606	"Protein ubiquitination";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_4004.1	17	MetaCyc: PWY-7224;MetaCyc: PWY-7222;MetaCyc: PWY-7176;MetaCyc: PWY-7227;MetaCyc: PWY-7187;MetaCyc: PWY-7221;MetaCyc: PWY-6545;MetaCyc: PWY-7205;MetaCyc: PWY-7184;MetaCyc: PWY-7197;KEGG: 00983+2.7.4.6;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7226;MetaCyc: PWY-7220;MetaCyc: PWY-7198;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7210	"Purine deoxyribonucleosides salvage";"Guanosine deoxyribonucleotides de novo biosynthesis II";"UTP and CTP de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"CMP phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Drug metabolism - other enzymes";"Purine metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP"
JAMg_model_2741.1	24	Reactome: R-HSA-114604;Reactome: R-HSA-5607764;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-5625740;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-5218921;Reactome: R-HSA-1257604;Reactome: R-HSA-9634635;Reactome: R-HSA-165158;Reactome: R-HSA-2730905;Reactome: R-HSA-392451;Reactome: R-HSA-2871837;Reactome: R-HSA-5218920;Reactome: R-HSA-5674400;KEGG: 04714+2.7.11.1;Reactome: R-HSA-6804757;KEGG: 05163+2.7.11.1;Reactome: R-HSA-389357;Reactome: R-HSA-202424;KEGG: 05170+2.7.11.1;Reactome: R-HSA-444257;Reactome: R-HSA-354192	"GPVI-mediated activation cascade";"CLEC7A (Dectin-1) signaling";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"RHO GTPases activate PKNs";"Relaxin signaling pathway";"Human papillomavirus infection";"VEGFR2 mediated cell proliferation";"PIP3 activates AKT signaling";"Estrogen-stimulated signaling through PRKCZ";"Activation of AKT2";"Role of LAT2/NTAL/LAB on calcium mobilization";"G beta:gamma signalling through PI3Kgamma";"FCERI mediated NF-kB activation";"VEGFR2 mediated vascular permeability";"Constitutive Signaling by AKT1 E17K in Cancer";"Thermogenesis";"Regulation of TP53 Degradation";"Human cytomegalovirus infection";"CD28 dependent PI3K/Akt signaling";"Downstream TCR signaling";"Human immunodeficiency virus 1 infection";"RSK activation";"Integrin signaling"
JAMg_model_7952.1	1	Reactome: R-HSA-350562	"Regulation of ornithine decarboxylase (ODC)"
JAMg_model_395.2	1	Reactome: R-HSA-430039	"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_4185.4	2	Reactome: R-HSA-70350;Reactome: R-HSA-168928	"Fructose catabolism";"DDX58/IFIH1-mediated induction of interferon-alpha/beta"
JAMg_model_14657.3	4	Reactome: R-HSA-8939211;Reactome: R-HSA-3371497;Reactome: R-HSA-9018519;Reactome: R-HSA-3371568	"ESR-mediated signaling";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Estrogen-dependent gene expression";"Attenuation phase"
JAMg_model_21070.1	16	Reactome: R-HSA-141430;Reactome: R-HSA-2559582;Reactome: R-HSA-69017;Reactome: R-HSA-176412;Reactome: R-HSA-174084;Reactome: R-HSA-174048;Reactome: R-HSA-176407;Reactome: R-HSA-176409;Reactome: R-HSA-174184;Reactome: R-HSA-174154;Reactome: R-HSA-8853884;Reactome: R-HSA-174178;Reactome: R-HSA-176408;Reactome: R-HSA-2467813;Reactome: R-HSA-179409;Reactome: R-HSA-983168	"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)";"CDK-mediated phosphorylation and removal of Cdc6";"Phosphorylation of the APC/C";"Autodegradation of Cdh1 by Cdh1:APC/C";"APC/C:Cdc20 mediated degradation of Cyclin B";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of Securin";"Transcriptional Regulation by VENTX";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Regulation of APC/C activators between G1/S and early anaphase";"Separation of Sister Chromatids";"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_39.1	12	Reactome: R-HSA-73980;Reactome: R-HSA-749476;Reactome: R-HSA-427413;Reactome: R-HSA-73772;Reactome: R-HSA-76061;Reactome: R-HSA-5250924;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-73762;Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-73863	"RNA Polymerase III Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation";"NoRC negatively regulates rRNA expression";"RNA Polymerase I Promoter Escape";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase I Transcription Initiation";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase I Transcription Termination"
JAMg_model_15923.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_18090.2	3	Reactome: R-HSA-947581;KEGG: 00790+4.1.99.22;MetaCyc: PWY-6823	"Molybdenum cofactor biosynthesis";"Folate biosynthesis";"Molybdenum cofactor biosynthesis"
JAMg_model_11644.1	16	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012	"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_1964.4	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_10546.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_11895.2	5	MetaCyc: PWY-7159;MetaCyc: PWY-5531;KEGG: 00860+4.1.1.37;MetaCyc: PWY-7766;Reactome: R-HSA-189451	"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)";"Porphyrin and chlorophyll metabolism";"Heme b biosynthesis IV (Gram-positive bacteria)";"Heme biosynthesis"
JAMg_model_21315.5	15	KEGG: 00620+2.7.1.40;MetaCyc: PWY-6142;Reactome: R-HSA-70171;MetaCyc: PWY-7003;MetaCyc: PWY-2221;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-5723;KEGG: 00010+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-7383;MetaCyc: PWY-5484;MetaCyc: PWY-1042;KEGG: 00230+2.7.1.40;MetaCyc: PWY-7218	"Pyruvate metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Glycerol degradation to butanol";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Rubisco shunt";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Anaerobic energy metabolism (invertebrates, cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Purine metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)"
JAMg_model_8494.1	1	Reactome: R-HSA-176974	"Unwinding of DNA"
JAMg_model_1364.1	1	Reactome: R-HSA-1483101	"Synthesis of PS"
JAMg_model_9277.4	3	Reactome: R-HSA-9603798;Reactome: R-HSA-8866654;Reactome: R-HSA-9033241	"Class I peroxisomal membrane protein import";"E3 ubiquitin ligases ubiquitinate target proteins";"Peroxisomal protein import"
JAMg_model_10767.3	13	Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_4682.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_14837.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_12468.3	1	Reactome: R-HSA-8850843	"Phosphate bond hydrolysis by NTPDase proteins"
JAMg_model_19874.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_9288.1	3	Reactome: R-HSA-6794361;Reactome: R-HSA-6798695;Reactome: R-HSA-264870	"Neurexins and neuroligins";"Neutrophil degranulation";"Caspase-mediated cleavage of cytoskeletal proteins"
JAMg_model_5495.1	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_20524.3	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_16232.3	4	KEGG: 00270+2.5.1.6;MetaCyc: PWY-5041;MetaCyc: PWY-5912;Reactome: R-HSA-156581	"Cysteine and methionine metabolism";"S-adenosyl-L-methionine cycle II";"2'-deoxymugineic acid phytosiderophore biosynthesis";"Methylation"
JAMg_model_19081.5	2	KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1	"Pentose phosphate pathway";"Purine metabolism"
JAMg_model_21022.1	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_17561.2	6	Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion"
JAMg_model_14336.1	3	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394;Reactome: R-HSA-3214847	"UCH proteinases";"DNA Damage Recognition in GG-NER";"HATs acetylate histones"
JAMg_model_20787.1	32	Reactome: R-HSA-73776;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-75955;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-76042;Reactome: R-HSA-6803529;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-77075;Reactome: R-HSA-72086;Reactome: R-HSA-167238	"RNA Polymerase II Promoter Escape";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation"
JAMg_model_12121.4	6	MetaCyc: PWY-6118;Reactome: R-HSA-1483166;MetaCyc: PWY-6952;KEGG: 00564+1.1.5.3;MetaCyc: PWY-4261;Reactome: R-HSA-163560	"Glycerol-3-phosphate shuttle";"Synthesis of PA";"Glycerophosphodiester degradation";"Glycerophospholipid metabolism";"Glycerol degradation I";"Triglyceride catabolism"
JAMg_model_16024.2	4	KEGG: 00260+4.2.1.22;MetaCyc: PWY-801;Reactome: R-HSA-1614603;KEGG: 00270+4.2.1.22	"Glycine, serine and threonine metabolism";"Homocysteine and cysteine interconversion";"Cysteine formation from homocysteine";"Cysteine and methionine metabolism"
JAMg_model_10403.1	12	Reactome: R-HSA-9013508;Reactome: R-HSA-9013695;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-350054;Reactome: R-HSA-2644606;Reactome: R-HSA-210744;Reactome: R-HSA-73762;Reactome: R-HSA-1912408;Reactome: R-HSA-5250924;Reactome: R-HSA-3214847;Reactome: R-HSA-8941856	"NOTCH3 Intracellular Domain Regulates Transcription";"NOTCH4 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"RNA Polymerase I Transcription Initiation";"Pre-NOTCH Transcription and Translation";"B-WICH complex positively regulates rRNA expression";"HATs acetylate histones";"RUNX3 regulates NOTCH signaling"
JAMg_model_7510.1	3	MetaCyc: PWY-7426;Reactome: R-HSA-975574;KEGG: 00510+2.4.1.144	"Complex N-linked glycan biosynthesis (vertebrates)";"Reactions specific to the hybrid N-glycan synthesis pathway";"N-Glycan biosynthesis"
JAMg_model_7098.2	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_15014.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_17939.1	3	Reactome: R-HSA-2142691;MetaCyc: PWY-7533;Reactome: R-HSA-5423646	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification"
JAMg_model_19228.1	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_359.8	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_3148.1	8	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Signaling by Hippo";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway"
JAMg_model_20977.1	3	Reactome: R-HSA-193648;Reactome: R-HSA-416482;Reactome: R-HSA-194840	"NRAGE signals death through JNK";"G alpha (12/13) signalling events";"Rho GTPase cycle"
JAMg_model_8960.1	1	Reactome: R-HSA-3295583	"TRP channels"
JAMg_model_18299.2	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_6703.1	5	KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219;Reactome: R-HSA-499943;KEGG: 00230+2.7.4.10;KEGG: 00230+2.7.4.3	"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Interconversion of nucleotide di- and triphosphates";"Purine metabolism";"Purine metabolism"
JAMg_model_16063.1	2	Reactome: R-HSA-3214847;Reactome: R-HSA-6804758	"HATs acetylate histones";"Regulation of TP53 Activity through Acetylation"
JAMg_model_17598.1	11	Reactome: R-HSA-1368108;Reactome: R-HSA-2151201;Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-2426168;Reactome: R-HSA-3214858;Reactome: R-HSA-1368082;Reactome: R-HSA-6804114;Reactome: R-HSA-400253;Reactome: R-HSA-9018519;Reactome: R-HSA-1989781	"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Transcriptional activation of mitochondrial biogenesis";"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"Activation of gene expression by SREBF (SREBP)";"RMTs methylate histone arginines";"RORA activates gene expression";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Circadian Clock";"Estrogen-dependent gene expression";"PPARA activates gene expression"
JAMg_model_5876.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_186.1	16	Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_2561.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_8725.3	2	Reactome: R-HSA-877300;Reactome: R-HSA-2132295	"Interferon gamma signaling";"MHC class II antigen presentation"
JAMg_model_4701.1	4	KEGG: 00860+1.14.14.18;MetaCyc: PWY-5874;Reactome: R-HSA-189483;Reactome: R-HSA-917937	"Porphyrin and chlorophyll metabolism";"Heme degradation I";"Heme degradation";"Iron uptake and transport"
JAMg_model_2725.1	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_9196.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_17901.3	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_10328.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_21338.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_20117.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_20341.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-6798695	"Protein ubiquitination";"Neutrophil degranulation"
JAMg_model_10744.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_3419.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_13298.1	2	KEGG: 00240+4.2.1.70;MetaCyc: PWY-6019	"Pyrimidine metabolism";"Pseudouridine degradation"
JAMg_model_17987.3	10	Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-75953;Reactome: R-HSA-3214847;Reactome: R-HSA-73779;Reactome: R-HSA-76042	"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Initiation";"HATs acetylate histones";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation And Promoter Clearance"
JAMg_model_15729.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_589.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4016.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_357.2	9	Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-6804756;Reactome: R-HSA-167162;Reactome: R-HSA-167172	"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome"
JAMg_model_6525.1	1	Reactome: R-HSA-435368	"Zinc efflux and compartmentalization by the SLC30 family"
JAMg_model_7796.2	15	Reactome: R-HSA-1912408;Reactome: R-HSA-4086398;Reactome: R-HSA-8934593;Reactome: R-HSA-9029569;Reactome: R-HSA-8936459;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-8948700;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-8853884;Reactome: R-HSA-2559585	"Pre-NOTCH Transcription and Translation";"Ca2+ pathway";"Regulation of RUNX1 Expression and Activity";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence"
JAMg_model_8291.1	33	Reactome: R-HSA-73762;Reactome: R-HSA-5696395;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-75953;Reactome: R-HSA-6782135;Reactome: R-HSA-73772;Reactome: R-HSA-73776;Reactome: R-HSA-69656;Reactome: R-HSA-76042;Reactome: R-HSA-69202;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-167162;Reactome: R-HSA-69231;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-112382;Reactome: R-HSA-6781827;Reactome: R-HSA-69273;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-73863;Reactome: R-HSA-6781823;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-167172;Reactome: R-HSA-8939236;Reactome: R-HSA-167246	"RNA Polymerase I Transcription Initiation";"Formation of Incision Complex in GG-NER";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Transcription Initiation";"Dual incision in TC-NER";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Promoter Escape";"Cyclin A:Cdk2-associated events at S phase entry";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Cyclin E associated events during G1/S transition";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II HIV Promoter Escape";"Cyclin D associated events in G1";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Formation of RNA Pol II elongation complex";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Cyclin A/B1/B2 associated events during G2/M transition";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"RNA Polymerase I Transcription Termination";"Formation of TC-NER Pre-Incision Complex";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"Transcription of the HIV genome";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Tat-mediated elongation of the HIV-1 transcript"
JAMg_model_18440.8	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_8897.3	3	Reactome: R-HSA-1268020;Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Mitochondrial protein import";"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_5876.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_5282.1	1	MetaCyc: PWY-6308	"L-cysteine biosynthesis II (tRNA-dependent)"
JAMg_model_2174.1	1	KEGG: 00565+3.1.1.47	"Ether lipid metabolism"
JAMg_model_21343.1	1	Reactome: R-HSA-162791	"Attachment of GPI anchor to uPAR"
JAMg_model_2351.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_14402.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_10839.1	11	Reactome: R-HSA-5696397;Reactome: R-HSA-68962;Reactome: R-HSA-5696400;Reactome: R-HSA-6782210;Reactome: R-HSA-68952;Reactome: R-HSA-6782135;Reactome: R-HSA-174430;Reactome: R-HSA-5656169;Reactome: R-HSA-110314;Reactome: R-HSA-5685942;Reactome: R-HSA-5651801	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Activation of the pre-replicative complex";"Dual Incision in GG-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"DNA replication initiation";"Dual incision in TC-NER";"Telomere C-strand synthesis initiation";"Termination of translesion DNA synthesis";"Recognition of DNA damage by PCNA-containing replication complex";"HDR through Homologous Recombination (HRR)";"PCNA-Dependent Long Patch Base Excision Repair"
JAMg_model_18391.1	5	Reactome: R-HSA-9029558;Reactome: R-HSA-2426168;Reactome: R-HSA-75105;Reactome: R-HSA-199220;Reactome: R-HSA-163765	"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression"
JAMg_model_3475.2	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_18117.1	12	MetaCyc: PWY-1187;MetaCyc: PWY-6936;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6309;MetaCyc: PWY-601;KEGG: 00380+2.6.1.7;MetaCyc: PWY-6842;MetaCyc: PWY-2821;Reactome: R-HSA-71240;MetaCyc: PWY-7901;MetaCyc: PWY-801;KEGG: 00270+4.4.1.13	"Glucosinolate biosynthesis from homomethionine";"Seleno-amino acid biosynthesis (plants)";"Selenocompound metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Glucosinolate biosynthesis from tryptophan";"Tryptophan metabolism";"Glutathione-mediated detoxification II";"Glucosinolate biosynthesis from phenylalanine";"Tryptophan catabolism";"Glucosinolate biosynthesis from tyrosine";"Homocysteine and cysteine interconversion";"Cysteine and methionine metabolism"
JAMg_model_21161.7	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-380284	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome"
JAMg_model_3093.1	6	Reactome: R-HSA-69052;Reactome: R-HSA-176187;Reactome: R-HSA-68962;Reactome: R-HSA-176974;Reactome: R-HSA-68949;Reactome: R-HSA-68867	"Switching of origins to a post-replicative state";"Activation of ATR in response to replication stress";"Activation of the pre-replicative complex";"Unwinding of DNA";"Orc1 removal from chromatin";"Assembly of the pre-replicative complex"
JAMg_model_8948.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_21066.3	15	Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-176034;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-167200;Reactome: R-HSA-2173796;Reactome: R-HSA-9018519;Reactome: R-HSA-167246;Reactome: R-HSA-6807505;Reactome: R-HSA-75955;Reactome: R-HSA-674695	"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"Interactions of Tat with host cellular proteins";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Estrogen-dependent gene expression";"Tat-mediated elongation of the HIV-1 transcript";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_13410.2	4	MetaCyc: PWY-7268;KEGG: 00480+1.1.1.49;MetaCyc: PWY-8004;KEGG: 00030+1.1.1.49	"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Glutathione metabolism";"Entner-Doudoroff pathway I";"Pentose phosphate pathway"
JAMg_model_5030.5	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_6318.3	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_419.1	1	Reactome: R-HSA-5689901	"Metalloprotease DUBs"
JAMg_model_18117.2	12	KEGG: 00380+2.6.1.7;MetaCyc: PWY-601;MetaCyc: PWY-6309;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6936;MetaCyc: PWY-1187;KEGG: 00270+4.4.1.13;MetaCyc: PWY-801;MetaCyc: PWY-7901;Reactome: R-HSA-71240;MetaCyc: PWY-2821;MetaCyc: PWY-6842	"Tryptophan metabolism";"Glucosinolate biosynthesis from tryptophan";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Selenocompound metabolism";"Seleno-amino acid biosynthesis (plants)";"Glucosinolate biosynthesis from homomethionine";"Cysteine and methionine metabolism";"Homocysteine and cysteine interconversion";"Glucosinolate biosynthesis from tyrosine";"Tryptophan catabolism";"Glucosinolate biosynthesis from phenylalanine";"Glutathione-mediated detoxification II"
JAMg_model_14563.3	1	Reactome: R-HSA-2428928	"IRS-related events triggered by IGF1R"
JAMg_model_13685.1	11	MetaCyc: PWY-6608;MetaCyc: PWY-5695;KEGG: 00983+1.17.3.2;MetaCyc: PWY-6606;MetaCyc: PWY-6596;MetaCyc: PWY-5497;KEGG: 00230+1.17.1.4+1.17.3.2;MetaCyc: PWY-6999;MetaCyc: PWY-6607;KEGG: 00232+1.17.3.2;MetaCyc: PWY-6538	"Guanosine nucleotides degradation III";"Inosine 5'-phosphate degradation";"Drug metabolism - other enzymes";"Guanosine nucleotides degradation II";"Adenosine nucleotides degradation I";"Purine nucleobases degradation II (anaerobic)";"Purine metabolism";"Theophylline degradation";"Guanosine nucleotides degradation I";"Caffeine metabolism";"Caffeine degradation III (bacteria, via demethylation)"
JAMg_model_2662.1	1	Reactome: R-HSA-373080	"Class B/2 (Secretin family receptors)"
JAMg_model_11244.1	2	Reactome: R-HSA-8963888;Reactome: R-HSA-8866423	"Chylomicron assembly";"VLDL assembly"
JAMg_model_17785.3	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_11774.1	2	Reactome: R-HSA-380095;Reactome: R-HSA-416476	"Tachykinin receptors bind tachykinins";"G alpha (q) signalling events"
JAMg_model_6339.1	1	Reactome: R-HSA-6804756	"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_326.3	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_16808.1	2	Reactome: R-HSA-380270;Reactome: R-HSA-380320	"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_6705.1	5	Reactome: R-HSA-389357;Reactome: R-HSA-5674400;Reactome: R-HSA-6804757;Reactome: R-HSA-5218920;Reactome: R-HSA-1257604	"CD28 dependent PI3K/Akt signaling";"Constitutive Signaling by AKT1 E17K in Cancer";"Regulation of TP53 Degradation";"VEGFR2 mediated vascular permeability";"PIP3 activates AKT signaling"
JAMg_model_20509.1	2	Reactome: R-HSA-1169408;Reactome: R-HSA-168276	"ISG15 antiviral mechanism";"NS1 Mediated Effects on Host Pathways"
JAMg_model_15438.1	17	Reactome: R-HSA-202424;Reactome: R-HSA-9020702;Reactome: R-HSA-5357956;Reactome: R-HSA-2871837;Reactome: R-HSA-1169091;Reactome: R-HSA-9014325;Reactome: R-HSA-450302;Reactome: R-HSA-937042;Reactome: R-HSA-445989;Reactome: R-HSA-4086398;Reactome: R-HSA-5607764;Reactome: R-HSA-937072;Reactome: R-HSA-168638;Reactome: R-HSA-5689880;Reactome: R-HSA-450321;Reactome: R-HSA-9645460;Reactome: R-HSA-975163	"Downstream TCR signaling";"Interleukin-1 signaling";"TNFR1-induced NFkappaB signaling pathway";"FCERI mediated NF-kB activation";"Activation of NF-kappaB in B cells";"TICAM1,TRAF6-dependent induction of TAK1 complex";"activated TAK1 mediates p38 MAPK activation";"IRAK2 mediated activation of TAK1 complex";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"Ca2+ pathway";"CLEC7A (Dectin-1) signaling";"TRAF6-mediated induction of TAK1 complex within TLR4 complex";"NOD1/2 Signaling Pathway";"Ub-specific processing proteases";"JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1";"Alpha-protein kinase 1 signaling pathway";"IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation"
JAMg_model_3693.1	3	Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_19162.7	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_20871.1	2	KEGG: 00970+6.1.1.20;Reactome: R-HSA-379726	"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation"
JAMg_model_7979.2	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_18525.1	2	KEGG: 00970+6.1.1.15;Reactome: R-HSA-379726	"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation"
JAMg_model_2979.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_19141.2	1	Reactome: R-HSA-6814848	"Glycerophospholipid catabolism"
JAMg_model_20317.1	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_11757.1	6	Reactome: R-HSA-8874211;Reactome: R-HSA-381033;Reactome: R-HSA-381426;Reactome: R-HSA-8957275;Reactome: R-HSA-8963889;Reactome: R-HSA-1655829	"CREB3 factors activate genes";"ATF6 (ATF6-alpha) activates chaperones";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation";"Assembly of active LPL and LIPC lipase complexes";"Regulation of cholesterol biosynthesis by SREBP (SREBF)"
JAMg_model_9168.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_13025.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_7052.2	1	Reactome: R-HSA-196108	"Pregnenolone biosynthesis"
JAMg_model_19028.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_4356.3	3	KEGG: 00510+2.4.1.265;Reactome: R-HSA-446193;Reactome: R-HSA-4724325	"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG8 causes ALG8-CDG (CDG-1h)"
JAMg_model_17459.4	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_13913.1	2	MetaCyc: PWY-5041;KEGG: 00270+3.3.1.1	"S-adenosyl-L-methionine cycle II";"Cysteine and methionine metabolism"
JAMg_model_11429.2	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_20787.12	32	Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167162;Reactome: R-HSA-9018519;Reactome: R-HSA-75955;Reactome: R-HSA-72203;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-73776;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-77075;Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-167160;Reactome: R-HSA-72163;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167290;Reactome: R-HSA-167243	"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Estrogen-dependent gene expression";"RNA Polymerase II Transcription Elongation";"Processing of Capped Intron-Containing Pre-mRNA";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Promoter Escape";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"mRNA Splicing - Major Pathway";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery"
JAMg_model_11882.1	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_8140.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_6310.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_3319.1	22	KEGG: 00400+2.6.1.1;KEGG: 00710+2.6.1.1;KEGG: 00330+2.6.1.1;MetaCyc: PWY-6642;Reactome: R-HSA-72163;KEGG: 00350+2.6.1.1;KEGG: 00950+2.6.1.1;MetaCyc: PWY-7115;MetaCyc: PWY-6638;KEGG: 00360+2.6.1.1;KEGG: 00220+2.6.1.1;KEGG: 00960+2.6.1.1;MetaCyc: PWY-7117;MetaCyc: PWY-7383;Reactome: R-HSA-73856;MetaCyc: PWY-6643;Reactome: R-HSA-72187;KEGG: 00250+2.6.1.1;Reactome: R-HSA-159236;KEGG: 00401+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00270+2.6.1.1	"Phenylalanine, tyrosine and tryptophan biosynthesis";"Carbon fixation in photosynthetic organisms";"Arginine and proline metabolism";"(R)-cysteate degradation";"mRNA Splicing - Major Pathway";"Tyrosine metabolism";"Isoquinoline alkaloid biosynthesis";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Sulfolactate degradation III";"Phenylalanine metabolism";"Arginine biosynthesis";"Tropane, piperidine and pyridine alkaloid biosynthesis";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Anaerobic energy metabolism (invertebrates, cytosol)";"RNA Polymerase II Transcription Termination";"Coenzyme M biosynthesis II";"mRNA 3'-end processing";"Alanine, aspartate and glutamate metabolism";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Novobiocin biosynthesis";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism"
JAMg_model_10932.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_5018.1	6	MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733	"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis"
JAMg_model_14613.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_5107.2	6	Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-141444	"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_11411.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_13705.1	1	Reactome: R-HSA-373080	"Class B/2 (Secretin family receptors)"
JAMg_model_9186.1	6	MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107;KEGG: 00561+2.7.1.107;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism";"Glycerolipid metabolism";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis"
JAMg_model_19084.3	5	Reactome: R-HSA-73856;Reactome: R-HSA-77595;Reactome: R-HSA-159231;Reactome: R-HSA-72187;Reactome: R-HSA-72163	"RNA Polymerase II Transcription Termination";"Processing of Intronless Pre-mRNAs";"Transport of Mature mRNA Derived from an Intronless Transcript";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway"
JAMg_model_5103.1	6	MetaCyc: PWY-7817;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism"
JAMg_model_9279.1	10	Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-382556;Reactome: R-HSA-72702;Reactome: R-HSA-9648895;Reactome: R-HSA-72649;Reactome: R-HSA-381042;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-72731	"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"ABC-family proteins mediated transport";"Ribosomal scanning and start codon recognition";"Response of EIF2AK1 (HRI) to heme deficiency";"Translation initiation complex formation";"PERK regulates gene expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Recycling of eIF2:GDP"
JAMg_model_1237.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_4772.2	2	Reactome: R-HSA-3769402;Reactome: R-HSA-201722	"Deactivation of the beta-catenin transactivating complex";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_5272.1	1	Reactome: R-HSA-435368	"Zinc efflux and compartmentalization by the SLC30 family"
JAMg_model_1382.1	57	Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-5610785;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-174084;Reactome: R-HSA-4641257	"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"GLI3 is processed to GLI3R by the proteasome";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN"
JAMg_model_13620.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-8849473	"Major pathway of rRNA processing in the nucleolus and cytosol";"PTK6 Expression"
JAMg_model_5978.1	1	Reactome: R-HSA-8856828	"Clathrin-mediated endocytosis"
JAMg_model_9895.1	10	MetaCyc: PWY-6317;MetaCyc: PWY-7344;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6527;MetaCyc: PWY-3821;MetaCyc: PWY-6397;Reactome: R-HSA-70370;MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2;Reactome: R-HSA-5609977	"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis";"Galactose metabolism";"Stachyose degradation";"D-galactose detoxification";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Galactose catabolism";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)"
JAMg_model_3026.1	1	Reactome: R-HSA-6790901	"rRNA modification in the nucleus and cytosol"
JAMg_model_583.4	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_19542.1	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_13323.1	3	Reactome: R-HSA-110330;Reactome: R-HSA-110331;Reactome: R-HSA-110357	"Recognition and association of DNA glycosylase with site containing an affected purine";"Cleavage of the damaged purine";"Displacement of DNA glycosylase by APEX1"
JAMg_model_8265.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_20586.3	3	Reactome: R-HSA-72187;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_3753.1	16	Reactome: R-HSA-174178;Reactome: R-HSA-8853884;Reactome: R-HSA-176408;Reactome: R-HSA-2467813;Reactome: R-HSA-174154;Reactome: R-HSA-983168;Reactome: R-HSA-179409;Reactome: R-HSA-141430;Reactome: R-HSA-2559582;Reactome: R-HSA-69017;Reactome: R-HSA-176412;Reactome: R-HSA-174184;Reactome: R-HSA-176409;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-174084	"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Transcriptional Regulation by VENTX";"Regulation of APC/C activators between G1/S and early anaphase";"Separation of Sister Chromatids";"APC/C:Cdc20 mediated degradation of Securin";"Antigen processing: Ubiquitination & Proteasome degradation";"APC-Cdc20 mediated degradation of Nek2A";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)";"CDK-mediated phosphorylation and removal of Cdc6";"Phosphorylation of the APC/C";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"Autodegradation of Cdh1 by Cdh1:APC/C"
JAMg_model_17980.1	1	Reactome: R-HSA-389661	"Glyoxylate metabolism and glycine degradation"
JAMg_model_13044.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_16432.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_20399.2	8	Reactome: R-HSA-6791226;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1	"Major pathway of rRNA processing in the nucleolus and cytosol";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection"
JAMg_model_2620.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_361.4	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_14757.2	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_6045.1	4	Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_16110.1	3	Reactome: R-HSA-1989781;Reactome: R-HSA-5678771;Reactome: R-HSA-382556	"PPARA activates gene expression";"Defective ABCB4 causes progressive familial intrahepatic cholestasis 3, intrahepatic cholestasis of pregnancy 3 and gallbladder disease 1";"ABC-family proteins mediated transport"
JAMg_model_9134.1	2	Reactome: R-HSA-446203;Reactome: R-HSA-1799339	"Asparagine N-linked glycosylation";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_5830.1	7	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76071	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 3 Promoter"
JAMg_model_907.11	8	Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-5099900;Reactome: R-HSA-8856825;Reactome: R-HSA-196025;Reactome: R-HSA-8856828	"Gap junction degradation";"Lysosome Vesicle Biogenesis";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4";"Cargo recognition for clathrin-mediated endocytosis";"Formation of annular gap junctions";"Clathrin-mediated endocytosis"
JAMg_model_2280.5	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_17245.1	1	Reactome: R-HSA-8854214	"TBC/RABGAPs"
JAMg_model_15170.1	7	Reactome: R-HSA-2660826;Reactome: R-HSA-2122948;Reactome: R-HSA-2979096;Reactome: R-HSA-9013507;Reactome: R-HSA-2894862;Reactome: R-HSA-2644606;Reactome: R-HSA-2691232	"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD Domain Mutants"
JAMg_model_17797.1	6	Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72689;Reactome: R-HSA-72649	"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of a pool of free 40S subunits";"Translation initiation complex formation"
JAMg_model_15420.2	3	KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348;KEGG: 00730+3.1.3.2	"Riboflavin metabolism";"Phosphate acquisition";"Thiamine metabolism"
JAMg_model_5690.1	2	Reactome: R-HSA-6783310;Reactome: R-HSA-606279	"Fanconi Anemia Pathway";"Deposition of new CENPA-containing nucleosomes at the centromere"
JAMg_model_11867.2	5	Reactome: R-HSA-69473;Reactome: R-HSA-3232118;Reactome: R-HSA-5693607;Reactome: R-HSA-5693565;Reactome: R-HSA-5693571	"G2/M DNA damage checkpoint";"SUMOylation of transcription factors";"Processing of DNA double-strand break ends";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Nonhomologous End-Joining (NHEJ)"
JAMg_model_20043.1	1	Reactome: R-HSA-1445148	"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_13456.2	2	Reactome: R-HSA-442982;Reactome: R-HSA-5673001	"Ras activation upon Ca2+ influx through NMDA receptor";"RAF/MAP kinase cascade"
JAMg_model_12710.2	6	MetaCyc: PWY-6908;KEGG: 00730+2.7.6.2;MetaCyc: PWY-7356;MetaCyc: PWY-6907;MetaCyc: PWY-6898;Reactome: R-HSA-196819	"Thiamine diphosphate biosynthesis IV (eukaryotes)";"Thiamine metabolism";"Thiamine salvage IV (yeast)";"Thiamine diphosphate biosynthesis III (Staphylococcus)";"Thiamine salvage III";"Vitamin B1 (thiamin) metabolism"
JAMg_model_10005.1	4	KEGG: 00473+5.1.1.1;MetaCyc: PWY-7383;MetaCyc: PWY-8072;MetaCyc: PWY-8040	"D-Alanine metabolism";"Anaerobic energy metabolism (invertebrates, cytosol)";"Alanine racemization";"Ansatrienin biosynthesis"
JAMg_model_399.1	4	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-430039;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"mRNA decay by 5' to 3' exoribonuclease";"Mitochondrial translation initiation"
JAMg_model_7791.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_11258.1	1	Reactome: R-HSA-110320	"Translesion Synthesis by POLH"
JAMg_model_20929.1	6	Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444	"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_68.1	3	Reactome: R-HSA-426048;MetaCyc: PWY-7420;KEGG: 00561+3.1.1.23	"Arachidonate production from DAG";"Monoacylglycerol metabolism (yeast)";"Glycerolipid metabolism"
JAMg_model_443.1	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_11842.3	17	Reactome: R-HSA-9633012;Reactome: R-HSA-6790901;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"rRNA modification in the nucleus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_14810.1	1	Reactome: R-HSA-6811434	"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_2146.1	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_2777.5	14	Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-203927;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-426486;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-426496;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723	"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"MicroRNA (miRNA) biogenesis";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Small interfering RNA (siRNA) biogenesis";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Post-transcriptional silencing by small RNAs";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation"
JAMg_model_4467.1	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_13539.2	7	Reactome: R-HSA-3214815;Reactome: R-HSA-5625886;Reactome: R-HSA-983231;Reactome: R-HSA-8943724;Reactome: R-HSA-9018519;Reactome: R-HSA-3214842;Reactome: R-HSA-9029569	"HDACs deacetylate histones";"Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3";"Factors involved in megakaryocyte development and platelet production";"Regulation of PTEN gene transcription";"Estrogen-dependent gene expression";"HDMs demethylate histones";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux"
JAMg_model_3554.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_5266.3	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_12385.2	1	Reactome: R-HSA-435368	"Zinc efflux and compartmentalization by the SLC30 family"
JAMg_model_2059.4	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_589.2	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_21104.2	57	Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-6798695;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895	"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Neutrophil degranulation";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis"
JAMg_model_242.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_9054.2	3	MetaCyc: PWY-0;KEGG: 00330+2.3.1.57;MetaCyc: PWY-6117	"Putrescine degradation III";"Arginine and proline metabolism";"Spermine and spermidine degradation I"
JAMg_model_2053.5	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_21066.1	15	Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-167287;Reactome: R-HSA-6796648;Reactome: R-HSA-167238;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-167200;Reactome: R-HSA-176034;Reactome: R-HSA-167246;Reactome: R-HSA-9018519;Reactome: R-HSA-2173796;Reactome: R-HSA-674695;Reactome: R-HSA-6807505;Reactome: R-HSA-75955	"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"HIV elongation arrest and recovery";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of Tat-mediated HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Interactions of Tat with host cellular proteins";"Tat-mediated elongation of the HIV-1 transcript";"Estrogen-dependent gene expression";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"RNA Polymerase II Pre-transcription Events";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Elongation"
JAMg_model_4236.1	1	Reactome: R-HSA-6804754	"Regulation of TP53 Expression"
JAMg_model_10547.1	6	Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase"
JAMg_model_8709.1	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_3495.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_5289.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_6819.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_20244.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_2840.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_1091.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_3376.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_3822.2	4	Reactome: R-HSA-5693607;Reactome: R-HSA-111465;Reactome: R-HSA-5689880;Reactome: R-HSA-176187	"Processing of DNA double-strand break ends";"Apoptotic cleavage of cellular proteins";"Ub-specific processing proteases";"Activation of ATR in response to replication stress"
JAMg_model_859.4	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_470.1	5	MetaCyc: PWY-5497;KEGG: 00670+4.3.1.4+2.1.2.5;MetaCyc: PWY-5030;KEGG: 00340+2.1.2.5;Reactome: R-HSA-70921	"Purine nucleobases degradation II (anaerobic)";"One carbon pool by folate";"L-histidine degradation III";"Histidine metabolism";"Histidine catabolism"
JAMg_model_15322.1	5	Reactome: R-HSA-73856;Reactome: R-HSA-6784531;Reactome: R-HSA-77595;Reactome: R-HSA-72163;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"tRNA processing in the nucleus";"Processing of Intronless Pre-mRNAs";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing"
JAMg_model_12876.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_15441.5	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_5673.1	2	Reactome: R-HSA-430039;MetaCyc: PWY-6938	"mRNA decay by 5' to 3' exoribonuclease";"NADH repair"
JAMg_model_19035.1	3	Reactome: R-HSA-196783;KEGG: 00770+2.7.1.33;MetaCyc: PWY-3961	"Coenzyme A biosynthesis";"Pantothenate and CoA biosynthesis";"Phosphopantothenate biosynthesis II"
JAMg_model_19272.8	2	Reactome: R-HSA-70921;KEGG: 00340+2.1.1.22	"Histidine catabolism";"Histidine metabolism"
JAMg_model_6728.1	57	Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-1236978;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-174154;Reactome: R-HSA-187577	"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"Cross-presentation of soluble exogenous antigens (endosomes)";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21"
JAMg_model_10992.5	2	MetaCyc: PWY-6854;Reactome: R-HSA-3299685	"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species"
JAMg_model_1080.1	5	KEGG: 00380+1.2.4.2;KEGG: 00020+1.2.4.2;KEGG: 00310+1.2.4.2;MetaCyc: PWY-5084;Reactome: R-HSA-389661	"Tryptophan metabolism";"Citrate cycle (TCA cycle)";"Lysine degradation";"2-oxoglutarate decarboxylation to succinyl-CoA";"Glyoxylate metabolism and glycine degradation"
JAMg_model_3326.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_20479.1	7	Reactome: R-HSA-76071;Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-76066	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_6456.1	22	Reactome: R-HSA-70263;MetaCyc: PWY-621;MetaCyc: PWY-7385;MetaCyc: PWY-5659;KEGG: 00030+5.3.1.9;MetaCyc: PWY-3801;MetaCyc: PWY-6992;KEGG: 00500+5.3.1.9;MetaCyc: PWY-5384;MetaCyc: PWY-8013;Reactome: R-HSA-70171;KEGG: 00520+5.3.1.9;MetaCyc: PWY-7238;MetaCyc: PWY-5514;MetaCyc: PWY-6981;MetaCyc: PWY-622;Reactome: R-HSA-6798695;MetaCyc: PWY-7347;Reactome: R-HSA-5628897;MetaCyc: PWY-6142;KEGG: 00010+5.3.1.9;MetaCyc: PWY-5054	"Gluconeogenesis";"Sucrose degradation III (sucrose invertase)";"1,3-propanediol biosynthesis (engineered)";"GDP-mannose biosynthesis";"Pentose phosphate pathway";"Sucrose degradation II (sucrose synthase)";"1,5-anhydrofructose degradation";"Starch and sucrose metabolism";"Sucrose degradation IV (sucrose phosphorylase)";"UDP-N-acetyl-D-galactosamine biosynthesis III";"Glycolysis";"Amino sugar and nucleotide sugar metabolism";"Sucrose biosynthesis II";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Chitin biosynthesis";"Starch biosynthesis";"Neutrophil degranulation";"Sucrose biosynthesis III";"TP53 Regulates Metabolic Genes";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis / Gluconeogenesis";"D-sorbitol biosynthesis I"
JAMg_model_938.2	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_11741.1	24	Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Kinesins";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion"
JAMg_model_18210.4	5	KEGG: 00730+2.2.1.7;MetaCyc: PWY-6892;KEGG: 00900+2.2.1.7;MetaCyc: PWY-6891;MetaCyc: PWY-7560	"Thiamine metabolism";"Thiazole biosynthesis I (facultative anaerobic bacteria)";"Terpenoid backbone biosynthesis";"Thiazole biosynthesis II (aerobic bacteria)";"Methylerythritol phosphate pathway II"
JAMg_model_20036.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_4767.1	6	Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-141444	"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_1379.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_14120.4	11	KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-450302;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-4420097;KEGG: 05163+2.7.11.1;Reactome: R-HSA-2559580;Reactome: R-HSA-171007	"Relaxin signaling pathway";"Human papillomavirus infection";"activated TAK1 mediates p38 MAPK activation";"Thermogenesis";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"VEGFA-VEGFR2 Pathway";"Human cytomegalovirus infection";"Oxidative Stress Induced Senescence";"p38MAPK events"
JAMg_model_19794.1	5	Reactome: R-HSA-3769402;Reactome: R-HSA-2122947;Reactome: R-HSA-4641265;Reactome: R-HSA-201722;Reactome: R-HSA-194840	"Deactivation of the beta-catenin transactivating complex";"NOTCH1 Intracellular Domain Regulates Transcription";"Repression of WNT target genes";"Formation of the beta-catenin:TCF transactivating complex";"Rho GTPase cycle"
JAMg_model_9736.2	2	Reactome: R-HSA-9033241;Reactome: R-HSA-8866654	"Peroxisomal protein import";"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_4541.4	7	Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_9669.1	4	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5628897	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination";"TP53 Regulates Metabolic Genes"
JAMg_model_14694.3	5	Reactome: R-HSA-5334118;Reactome: R-HSA-212300;KEGG: 00270+2.1.1.37;Reactome: R-HSA-4655427;Reactome: R-HSA-427413	"DNA methylation";"PRC2 methylates histones and DNA";"Cysteine and methionine metabolism";"SUMOylation of DNA methylation proteins";"NoRC negatively regulates rRNA expression"
JAMg_model_10058.2	2	Reactome: R-HSA-6785470;Reactome: R-HSA-6784531	"tRNA processing in the mitochondrion";"tRNA processing in the nucleus"
JAMg_model_4541.1	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_10328.8	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_17811.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_2615.1	33	MetaCyc: PWY-6871;Reactome: R-HSA-71384;KEGG: 00626+1.1.1.1;MetaCyc: PWY-6313;KEGG: 00625+1.1.1.1;MetaCyc: PWY-5751;MetaCyc: PWY-6333;MetaCyc: PWY-1801;MetaCyc: PWY-6587;MetaCyc: PWY-7396;MetaCyc: PWY-7118;MetaCyc: PWY-5076;MetaCyc: PWY-5057;KEGG: 00350+1.1.1.1;MetaCyc: PWY-5082;KEGG: 00010+1.1.1.1;KEGG: 00680+1.1.1.284;MetaCyc: PWY-7798;MetaCyc: PWY-5486;MetaCyc: PWY-6342;KEGG: 00830+1.1.1.1;KEGG: 00980+1.1.1.1;KEGG: 00982+1.1.1.1;MetaCyc: PWY-5480;MetaCyc: PWY-5079;MetaCyc: PWY-7013;MetaCyc: PWY-7111;KEGG: 00260+1.1.1.1;MetaCyc: PWY-3162;KEGG: 00071+1.1.1.1;KEGG: 00592+1.1.1.1;MetaCyc: PWY-6802;MetaCyc: PWY-5078	"3-methylbutanol biosynthesis (engineered)";"Ethanol oxidation";"Naphthalene degradation";"Serotonin degradation";"Chloroalkane and chloroalkene degradation";"Phenylethanol biosynthesis";"Acetaldehyde biosynthesis I";"Formaldehyde oxidation II (glutathione-dependent)";"Pyruvate fermentation to ethanol III";"Butanol and isobutanol biosynthesis (engineered)";"Chitin degradation to ethanol";"L-leucine degradation III";"L-valine degradation II";"Tyrosine metabolism";"L-methionine degradation III";"Glycolysis / Gluconeogenesis";"Methane metabolism";"Protein S-nitrosylation and denitrosylation";"Pyruvate fermentation to ethanol II";"Noradrenaline and adrenaline degradation";"Retinol metabolism";"Metabolism of xenobiotics by cytochrome P450";"Drug metabolism - cytochrome P450";"Pyruvate fermentation to ethanol I";"L-phenylalanine degradation III";"(S)-propane-1,2-diol degradation";"Pyruvate fermentation to isobutanol (engineered)";"Glycine, serine and threonine metabolism";"L-tryptophan degradation V (side chain pathway)";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"Salidroside biosynthesis";"L-isoleucine degradation II"
JAMg_model_570.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_18830.2	10	MetaCyc: PWY-5757;KEGG: 00440+5.4.2.9;MetaCyc: PWY-6682;MetaCyc: PWY-7510;MetaCyc: PWY-6322;MetaCyc: PWY-7419;MetaCyc: PWY-6839;MetaCyc: PWY-7769;KEGG: 00998+5.4.2.9;MetaCyc: PWY-8067	"Fosfomycin biosynthesis";"Phosphonate and phosphinate metabolism";"Dehydrophos biosynthesis";"Rhizocticin A and B biosynthesis";"Phosphinothricin tripeptide biosynthesis";"FR-900098 and FR-33289 antibiotics biosynthesis";"2-aminoethylphosphonate biosynthesis";"Phosalacine biosynthesis";"Biosynthesis of various secondary metabolites - part 2";"Methylphosphonate biosynthesis"
JAMg_model_12827.4	2	Reactome: R-HSA-6783310;Reactome: R-HSA-5693568	"Fanconi Anemia Pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_15632.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_2263.1	26	Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-389960;Reactome: R-HSA-983189;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-8955332;Reactome: R-HSA-389977;Reactome: R-HSA-6811434;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399	"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Formation of tubulin folding intermediates by CCT/TriC";"Kinesins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Carboxyterminal post-translational modifications of tubulin";"Post-chaperonin tubulin folding pathway";"COPI-dependent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy"
JAMg_model_6424.1	27	Reactome: R-HSA-159236;Reactome: R-HSA-72203;Reactome: R-HSA-72086;Reactome: R-HSA-167152;Reactome: R-HSA-9010553;Reactome: R-HSA-6803529;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-73856;Reactome: R-HSA-111367;Reactome: R-HSA-8851708;Reactome: R-HSA-975957;Reactome: R-HSA-159227;Reactome: R-HSA-72187;Reactome: R-HSA-72165;Reactome: R-HSA-77595;Reactome: R-HSA-159231;Reactome: R-HSA-975956;Reactome: R-HSA-167242;Reactome: R-HSA-112382;Reactome: R-HSA-159230;Reactome: R-HSA-167200;Reactome: R-HSA-77588;Reactome: R-HSA-72163;Reactome: R-HSA-191859;Reactome: R-HSA-6807505;Reactome: R-HSA-674695	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Processing of Capped Intron-Containing Pre-mRNA";"mRNA Capping";"Formation of HIV elongation complex in the absence of HIV Tat";"Regulation of expression of SLITs and ROBOs";"FGFR2 alternative splicing";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II Transcription Termination";"SLBP independent Processing of Histone Pre-mRNAs";"Signaling by FGFR2 IIIa TM";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Transport of the SLBP independent Mature mRNA";"mRNA 3'-end processing";"mRNA Splicing - Minor Pathway";"Processing of Intronless Pre-mRNAs";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of RNA Pol II elongation complex";"Transport of the SLBP Dependant Mature mRNA";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs";"mRNA Splicing - Major Pathway";"snRNP Assembly";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events"
JAMg_model_8160.2	12	MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385;KEGG: 00030+4.1.2.13;KEGG: 00680+4.1.2.13;KEGG: 00710+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70171;MetaCyc: PWY-1861;MetaCyc: PWY-6142	"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Pentose phosphate pathway";"Methane metabolism";"Carbon fixation in photosynthetic organisms";"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Glycolysis";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)"
JAMg_model_18117.10	12	KEGG: 00270+4.4.1.13;MetaCyc: PWY-2821;MetaCyc: PWY-801;Reactome: R-HSA-71240;MetaCyc: PWY-7901;MetaCyc: PWY-6842;MetaCyc: PWY-601;KEGG: 00380+2.6.1.7;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6309;MetaCyc: PWY-6936;MetaCyc: PWY-1187	"Cysteine and methionine metabolism";"Glucosinolate biosynthesis from phenylalanine";"Homocysteine and cysteine interconversion";"Tryptophan catabolism";"Glucosinolate biosynthesis from tyrosine";"Glutathione-mediated detoxification II";"Glucosinolate biosynthesis from tryptophan";"Tryptophan metabolism";"Selenocompound metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Seleno-amino acid biosynthesis (plants)";"Glucosinolate biosynthesis from homomethionine"
JAMg_model_15205.1	4	KEGG: 00513+2.4.1.260;Reactome: R-HSA-4720489;KEGG: 00510+2.4.1.260;Reactome: R-HSA-446193	"Various types of N-glycan biosynthesis";"Defective ALG12 causes ALG12-CDG (CDG-1g)";"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein"
JAMg_model_4360.1	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394	"UCH proteinases";"DNA Damage Recognition in GG-NER"
JAMg_model_5403.1	13	Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_18534.2	5	Reactome: R-HSA-1266695;Reactome: R-HSA-3214858;Reactome: R-HSA-201722;Reactome: R-HSA-3247509;Reactome: R-HSA-8939243	"Interleukin-7 signaling";"RMTs methylate histone arginines";"Formation of the beta-catenin:TCF transactivating complex";"Chromatin modifying enzymes";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_2.1	1	KEGG: 00860+4.4.1.17	"Porphyrin and chlorophyll metabolism"
JAMg_model_10351.1	3	Reactome: R-HSA-381426;Reactome: R-HSA-8957275;Reactome: R-HSA-5362798	"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation";"Release of Hh-Np from the secreting cell"
JAMg_model_1852.1	2	Reactome: R-HSA-1169408;Reactome: R-HSA-168276	"ISG15 antiviral mechanism";"NS1 Mediated Effects on Host Pathways"
JAMg_model_21315.7	15	Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00620+2.7.1.40;MetaCyc: PWY-6142;KEGG: 00230+2.7.1.40;MetaCyc: PWY-6901;KEGG: 00010+2.7.1.40;MetaCyc: PWY-1042;MetaCyc: PWY-5484;MetaCyc: PWY-7383;MetaCyc: PWY-7218;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-2221;MetaCyc: PWY-5723	"Glycolysis";"Glycerol degradation to butanol";"Pyruvate metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Purine metabolism";"Superpathway of glucose and xylose degradation";"Glycolysis / Gluconeogenesis";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Rubisco shunt"
JAMg_model_20989.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_1629.1	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_5776.5	3	Reactome: R-HSA-1614603;Reactome: R-HSA-1614558;Reactome: R-HSA-2408508	"Cysteine formation from homocysteine";"Degradation of cysteine and homocysteine";"Metabolism of ingested SeMet, Sec, MeSec into H2Se"
JAMg_model_886.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_20250.1	1	Reactome: R-HSA-9609523	"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_15441.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_7685.1	4	MetaCyc: PWY-6855;MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00520+3.2.1.14	"Chitin degradation I (archaea)";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_387.1	2	KEGG: 00030+2.7.1.15;Reactome: R-HSA-71336	"Pentose phosphate pathway";"Pentose phosphate pathway"
JAMg_model_10600.3	14	Reactome: R-HSA-426486;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593;Reactome: R-HSA-9029569;Reactome: R-HSA-5628897;Reactome: R-HSA-203927;Reactome: R-HSA-5687128;Reactome: R-HSA-8948700;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-426496	"Small interfering RNA (siRNA) biogenesis";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"TP53 Regulates Metabolic Genes";"MicroRNA (miRNA) biogenesis";"MAPK6/MAPK4 signaling";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Post-transcriptional silencing by small RNAs"
JAMg_model_17561.3	6	Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion"
JAMg_model_7441.1	1	Reactome: R-HSA-5617833	"Cilium Assembly"
JAMg_model_19399.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11756.1	2	Reactome: R-HSA-9033241;Reactome: R-HSA-390918	"Peroxisomal protein import";"Peroxisomal lipid metabolism"
JAMg_model_3438.7	3	Reactome: R-HSA-2129379;Reactome: R-HSA-1474228;Reactome: R-HSA-1566948	"Molecules associated with elastic fibres";"Degradation of the extracellular matrix";"Elastic fibre formation"
JAMg_model_1031.1	8	Reactome: R-HSA-432040;Reactome: R-HSA-381676;Reactome: R-HSA-164378;Reactome: R-HSA-983231;Reactome: R-HSA-442720;Reactome: R-HSA-180024;Reactome: R-HSA-5610787;Reactome: R-HSA-163615	"Vasopressin regulates renal water homeostasis via Aquaporins";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"PKA activation in glucagon signalling";"Factors involved in megakaryocyte development and platelet production";"CREB1 phosphorylation through the activation of Adenylate Cyclase";"DARPP-32 events";"Hedgehog 'off' state";"PKA activation"
JAMg_model_1931.1	1	Reactome: R-HSA-373080	"Class B/2 (Secretin family receptors)"
JAMg_model_1565.2	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_18624.3	13	Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_19211.1	56	Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-4641258;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128	"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"UCH proteinases";"Degradation of DVL";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling"
JAMg_model_1696.1	9	Reactome: R-HSA-69205;Reactome: R-HSA-113501;Reactome: R-HSA-69183;Reactome: R-HSA-68962;Reactome: R-HSA-174411;Reactome: R-HSA-174430;Reactome: R-HSA-69091;Reactome: R-HSA-69166;Reactome: R-HSA-68952	"G1/S-Specific Transcription";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Processive synthesis on the lagging strand";"Activation of the pre-replicative complex";"Polymerase switching on the C-strand of the telomere";"Telomere C-strand synthesis initiation";"Polymerase switching";"Removal of the Flap Intermediate";"DNA replication initiation"
JAMg_model_13413.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-8873719	"RAB GEFs exchange GTP for GDP on RABs";"RAB geranylgeranylation"
JAMg_model_21022.6	13	Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957	"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_4290.1	1	Reactome: R-HSA-913709	"O-linked glycosylation of mucins"
JAMg_model_19116.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_12320.2	18	MetaCyc: PWY-7205;Reactome: R-HSA-499943;MetaCyc: PWY-6545;MetaCyc: PWY-7221;MetaCyc: PWY-7187;MetaCyc: PWY-7227;MetaCyc: PWY-7176;MetaCyc: PWY-7224;MetaCyc: PWY-7222;MetaCyc: PWY-7210;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7220;MetaCyc: PWY-7198;MetaCyc: PWY-7226;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7197;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7184	"CMP phosphorylation";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Adenosine deoxyribonucleotides de novo biosynthesis";"UTP and CTP de novo biosynthesis";"Purine deoxyribonucleosides salvage";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine metabolism";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism";"Pyrimidine deoxyribonucleotide phosphorylation";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotides de novo biosynthesis I"
JAMg_model_14736.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_8311.1	2	Reactome: R-HSA-180024;KEGG: 00230+3.1.4.53	"DARPP-32 events";"Purine metabolism"
JAMg_model_21148.1	1	Reactome: R-HSA-110362	"POLB-Dependent Long Patch Base Excision Repair"
JAMg_model_15277.3	10	MetaCyc: PWY-1722;MetaCyc: PWY-2201;MetaCyc: PWY-5497;KEGG: 00670+1.5.1.5+3.5.4.9;KEGG: 00720+1.5.1.5+3.5.4.9;MetaCyc: PWY-7909;MetaCyc: PWY-6613;MetaCyc: PWY-3841;MetaCyc: PWY-5030;Reactome: R-HSA-196757	"Formate assimilation into 5,10-methylenetetrahydrofolate";"Folate transformations I";"Purine nucleobases degradation II (anaerobic)";"One carbon pool by folate";"Carbon fixation pathways in prokaryotes";"Formaldehyde oxidation VII (THF pathway)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Folate transformations II (plants)";"L-histidine degradation III";"Metabolism of folate and pterines"
JAMg_model_322.2	1	Reactome: R-HSA-156584	"Cytosolic sulfonation of small molecules"
JAMg_model_5494.1	13	Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_13226.4	3	KEGG: 00561+2.7.1.30;MetaCyc: PWY-4261;Reactome: R-HSA-75109	"Glycerolipid metabolism";"Glycerol degradation I";"Triglyceride biosynthesis"
JAMg_model_12772.2	3	Reactome: R-HSA-212436;Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"Generic Transcription Pathway";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_17867.1	10	MetaCyc: PWY-5826;KEGG: 00430+2.3.2.2;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-8001;MetaCyc: PWY-6842;MetaCyc: PWY-7559;MetaCyc: PWY-4041;MetaCyc: PWY-7112;KEGG: 00460+2.3.2.2;MetaCyc: PWY-4061	"Hypoglycin biosynthesis";"Taurine and hypotaurine metabolism";"Glutathione metabolism";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Glutathione-mediated detoxification II";"Glutathione degradation (DUG pathway";"Gamma-glutamyl cycle";"4-hydroxy-2-nonenal detoxification";"Cyanoamino acid metabolism";"Glutathione-mediated detoxification I"
JAMg_model_9881.4	5	KEGG: 00260+2.3.1.37;KEGG: 00860+2.3.1.37;MetaCyc: PWY-5189;MetaCyc: PWY-7536;Reactome: R-HSA-189451	"Glycine, serine and threonine metabolism";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis II (from glycine)";"2-amino-3-hydroxycyclopent-2-enone biosynthesis";"Heme biosynthesis"
JAMg_model_88.1	6	KEGG: 00561+2.7.1.107;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7817	"Glycerolipid metabolism";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_878.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_17386.1	3	Reactome: R-HSA-8963684;KEGG: 00643+3.7.1.2;KEGG: 00350+3.7.1.2	"Tyrosine catabolism";"Styrene degradation";"Tyrosine metabolism"
JAMg_model_5636.1	4	Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-350054;Reactome: R-HSA-2644606	"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_19319.1	18	Reactome: R-HSA-72086;Reactome: R-HSA-167152;Reactome: R-HSA-167238;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167246;Reactome: R-HSA-77075;Reactome: R-HSA-75955;Reactome: R-HSA-167287;Reactome: R-HSA-167242;Reactome: R-HSA-112382;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-167160;Reactome: R-HSA-6807505;Reactome: R-HSA-674695	"mRNA Capping";"Formation of HIV elongation complex in the absence of HIV Tat";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript";"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Elongation";"HIV elongation arrest and recovery";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of RNA Pol II elongation complex";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events"
JAMg_model_13040.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-6803157	"Neutrophil degranulation";"Antimicrobial peptides"
JAMg_model_16891.3	1	Reactome: R-HSA-74217	"Purine salvage"
JAMg_model_8885.2	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_13706.1	1	Reactome: R-HSA-9037629	"Lewis blood group biosynthesis"
JAMg_model_9991.2	1	Reactome: R-HSA-196819	"Vitamin B1 (thiamin) metabolism"
JAMg_model_6002.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_10017.2	1	Reactome: R-HSA-8874211	"CREB3 factors activate genes"
JAMg_model_12173.1	4	Reactome: R-HSA-499943;Reactome: R-HSA-6798695;Reactome: R-HSA-2162123;KEGG: 00590+5.3.99.3	"Interconversion of nucleotide di- and triphosphates";"Neutrophil degranulation";"Synthesis of Prostaglandins (PG) and Thromboxanes (TX)";"Arachidonic acid metabolism"
JAMg_model_2125.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_4485.5	4	Reactome: R-HSA-5689603;MetaCyc: PWY-7437;Reactome: R-HSA-3214847;KEGG: 00514+2.4.1.255	"UCH proteinases";"Protein O-[N-acetyl]-glucosylation";"HATs acetylate histones";"Other types of O-glycan biosynthesis"
JAMg_model_8611.1	7	Reactome: R-HSA-8964208;KEGG: 00790+1.14.16.1;Reactome: R-HSA-2160456;KEGG: 00400+1.14.16.1;MetaCyc: PWY-7158;MetaCyc: PWY-6134;KEGG: 00360+1.14.16.1	"Phenylalanine metabolism";"Folate biosynthesis";"Phenylketonuria";"Phenylalanine, tyrosine and tryptophan biosynthesis";"L-phenylalanine degradation V";"L-tyrosine biosynthesis IV";"Phenylalanine metabolism"
JAMg_model_19116.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_13068.2	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_19983.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_602.2	13	Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_10947.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_16886.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_12703.2	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_3132.2	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_13315.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_19039.2	3	Reactome: R-HSA-110314;MetaCyc: PWY-7511;Reactome: R-HSA-8866654	"Recognition of DNA damage by PCNA-containing replication complex";"Protein ubiquitination";"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_17000.3	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_4994.1	2	Reactome: R-HSA-2142850;Reactome: R-HSA-382556	"Hyaluronan biosynthesis and export";"ABC-family proteins mediated transport"
JAMg_model_18100.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_997.1	2	Reactome: R-HSA-6782315;MetaCyc: PWY-6829	"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)"
JAMg_model_19199.3	1	KEGG: 00970+6.1.1.3	"Aminoacyl-tRNA biosynthesis"
JAMg_model_9481.2	8	Reactome: R-HSA-1222556;Reactome: R-HSA-9636467;Reactome: R-HSA-167590;Reactome: R-HSA-983712;Reactome: R-HSA-182218;Reactome: R-HSA-9639288;Reactome: R-HSA-77387;Reactome: R-HSA-917977	"ROS and RNS production in phagocytes";"Blockage of phagosome acidification";"Nef Mediated CD4 Down-regulation";"Ion channel transport";"Nef Mediated CD8 Down-regulation";"Amino acids regulate mTORC1";"Insulin receptor recycling";"Transferrin endocytosis and recycling"
JAMg_model_6329.1	1	MetaCyc: PWY-7379	"Mrna capping II"
JAMg_model_3935.1	1	Reactome: R-HSA-379716	"Cytosolic tRNA aminoacylation"
JAMg_model_3475.1	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_11878.1	6	Reactome: R-HSA-189085;MetaCyc: PWY-5067;MetaCyc: PWY-622;KEGG: 00500+2.4.1.18;KEGG: 00500+3.2.1.1;MetaCyc: PWY-7900	"Digestion of dietary carbohydrate";"Glycogen biosynthesis II (from UDP-D-Glucose)";"Starch biosynthesis";"Starch and sucrose metabolism";"Starch and sucrose metabolism";"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)"
JAMg_model_3961.1	3	KEGG: 00310+1.14.11.8;MetaCyc: PWY-6100;Reactome: R-HSA-71262	"Lysine degradation";"L-carnitine biosynthesis";"Carnitine synthesis"
JAMg_model_4185.5	2	Reactome: R-HSA-168928;Reactome: R-HSA-70350	"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"Fructose catabolism"
JAMg_model_18825.1	5	Reactome: R-HSA-8866654;Reactome: R-HSA-75955;Reactome: R-HSA-674695;Reactome: R-HSA-201722;Reactome: R-HSA-112382	"E3 ubiquitin ligases ubiquitinate target proteins";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events";"Formation of the beta-catenin:TCF transactivating complex";"Formation of RNA Pol II elongation complex"
JAMg_model_20006.1	5	Reactome: R-HSA-6811438;Reactome: R-HSA-6811434;Reactome: R-HSA-204005;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"COPI-dependent Golgi-to-ER retrograde traffic";"COPII-mediated vesicle transport";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_8699.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_10223.1	2	Reactome: R-HSA-5620924;Reactome: R-HSA-5610787	"Intraflagellar transport";"Hedgehog 'off' state"
JAMg_model_16405.1	2	Reactome: R-HSA-877300;Reactome: R-HSA-2132295	"Interferon gamma signaling";"MHC class II antigen presentation"
JAMg_model_17921.1	1	Reactome: R-HSA-209968	"Thyroxine biosynthesis"
JAMg_model_10021.8	4	KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;KEGG: 00053+1.13.99.1;Reactome: R-HSA-1855183	"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Ascorbate and aldarate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol"
JAMg_model_18551.1	2	Reactome: R-HSA-5628897;Reactome: R-HSA-611105	"TP53 Regulates Metabolic Genes";"Respiratory electron transport"
JAMg_model_5070.3	17	MetaCyc: PWY-6608;KEGG: 00760+2.4.2.1;MetaCyc: PWY-6627;MetaCyc: PWY-5695;MetaCyc: PWY-6644;MetaCyc: PWY-7179;Reactome: R-HSA-74259;MetaCyc: PWY-6611;KEGG: 00240+2.4.2.1;MetaCyc: PWY-7179-1;MetaCyc: PWY-6609;MetaCyc: PWY-4202;MetaCyc: PWY-6620;Reactome: R-HSA-74217;MetaCyc: PWY-5532;Reactome: R-HSA-6798695;KEGG: 00230+2.4.2.1	"Guanosine nucleotides degradation III";"Nicotinate and nicotinamide metabolism";"Salinosporamide A biosynthesis";"Inosine 5'-phosphate degradation";"Fluoroacetate and fluorothreonine biosynthesis";"Purine deoxyribonucleosides degradation I";"Purine catabolism";"Adenine and adenosine salvage V";"Pyrimidine metabolism";"Purine deoxyribonucleosides degradation II";"Adenine and adenosine salvage III";"Arsenate detoxification I (mammalian)";"Guanine and guanosine salvage";"Purine salvage";"Nucleoside and nucleotide degradation (archaea)";"Neutrophil degranulation";"Purine metabolism"
JAMg_model_393.2	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_3598.1	1	Reactome: R-HSA-70350	"Fructose catabolism"
JAMg_model_14545.1	70	KEGG: 00564+2.3.1.51;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-5676590;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-174154;MetaCyc: PWY-5667;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;MetaCyc: PWY-8053;MetaCyc: PWY-7589;MetaCyc: PWY-7411;Reactome: R-HSA-69481;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;MetaCyc: PWY-7782;Reactome: R-HSA-4641258;MetaCyc: PWY-7587;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-1483166;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;MetaCyc: PWY-5981;Reactome: R-HSA-5668541;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-68949;MetaCyc: PWY-8051;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-187577;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-382556;MetaCyc: PWY-8055;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;MetaCyc: PWY-6453;Reactome: R-HSA-1234176;MetaCyc: PWY-7417;Reactome: R-HSA-5689603;KEGG: 00561+2.3.1.51;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-69017	"Glycerophospholipid metabolism";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"NIK-->noncanonical NF-kB signaling";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"APC/C:Cdc20 mediated degradation of Securin";"CDP-diacylglycerol biosynthesis I";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Anandamide biosynthesis II";"Palmitoleate biosynthesis III (cyanobacteria)";"Phosphatidate biosynthesis (yeast)";"G2/M Checkpoints";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Plasmalogen biosynthesis";"Degradation of DVL";"Oleate biosynthesis III (cyanobacteria)";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"Synthesis of PA";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"CDP-diacylglycerol biosynthesis III";"TNFR2 non-canonical NF-kB pathway";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Orc1 removal from chromatin";"Anandamide biosynthesis I";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"Palmitoyl ethanolamide biosynthesis";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Stigma estolide biosynthesis";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Phospholipid remodeling (phosphatidate, yeast)";"UCH proteinases";"Glycerolipid metabolism";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6"
JAMg_model_17255.1	3	MetaCyc: PWY-7833;Reactome: R-HSA-9033807;MetaCyc: PWY-7831	"Biosynthesis of Lewis epitopes (H. pylori)";"ABO blood group biosynthesis";"ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide"
JAMg_model_18152.3	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_14135.1	27	Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-3371453;Reactome: R-HSA-1169408;Reactome: R-HSA-159230;Reactome: R-HSA-5619107;Reactome: R-HSA-4615885;Reactome: R-HSA-9609690;Reactome: R-HSA-3108214;Reactome: R-HSA-168333	"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Regulation of HSF1-mediated heat shock response";"ISG15 antiviral mechanism";"Transport of the SLBP Dependant Mature mRNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA replication proteins";"HCMV Early Events";"SUMOylation of DNA damage response and repair proteins";"NEP/NS2 Interacts with the Cellular Export Machinery"
JAMg_model_21100.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_7657.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_14961.3	4	MetaCyc: PWY-6987;MetaCyc: PWY-7382;Reactome: R-HSA-389661;KEGG: 00785+2.8.1.8	"Lipoate biosynthesis and incorporation III (Bacillus)";"Lipoate biosynthesis and incorporation IV (yeast)";"Glyoxylate metabolism and glycine degradation";"Lipoic acid metabolism"
JAMg_model_15505.4	2	Reactome: R-HSA-418457;Reactome: R-HSA-4086398	"cGMP effects";"Ca2+ pathway"
JAMg_model_19885.2	2	Reactome: R-HSA-1236974;Reactome: R-HSA-1799339	"ER-Phagosome pathway";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_5588.3	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_19533.1	2	Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_6438.1	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_13400.1	10	Reactome: R-HSA-2565942;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-5684264;Reactome: R-HSA-202424;Reactome: R-HSA-5607764;Reactome: R-HSA-5676590;Reactome: R-HSA-2871837;Reactome: R-HSA-8951664;Reactome: R-HSA-1169091	"Regulation of PLK1 Activity at G2/M Transition";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"Downstream TCR signaling";"CLEC7A (Dectin-1) signaling";"NIK-->noncanonical NF-kB signaling";"FCERI mediated NF-kB activation";"Neddylation";"Activation of NF-kappaB in B cells"
JAMg_model_8065.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_5232.2	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_8445.1	5	Reactome: R-HSA-5696397;Reactome: R-HSA-110381;Reactome: R-HSA-6782210;Reactome: R-HSA-5685939;Reactome: R-HSA-5649702	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Resolution of AP sites via the single-nucleotide replacement pathway";"Gap-filling DNA repair synthesis and ligation in TC-NER";"HDR through MMEJ (alt-NHEJ)";"APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway"
JAMg_model_18999.1	16	Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226	"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_2770.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_14956.1	2	Reactome: R-HSA-380320;Reactome: R-HSA-68875	"Recruitment of NuMA to mitotic centrosomes";"Mitotic Prophase"
JAMg_model_15097.4	8	Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-9639288;Reactome: R-HSA-983712;Reactome: R-HSA-182218;Reactome: R-HSA-9636467;Reactome: R-HSA-1222556;Reactome: R-HSA-167590	"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Amino acids regulate mTORC1";"Ion channel transport";"Nef Mediated CD8 Down-regulation";"Blockage of phagosome acidification";"ROS and RNS production in phagocytes";"Nef Mediated CD4 Down-regulation"
JAMg_model_5262.4	2	Reactome: R-HSA-379716;KEGG: 00970+6.1.1.1	"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_10182.3	5	Reactome: R-HSA-3371497;Reactome: R-HSA-6807878;Reactome: R-HSA-983231;Reactome: R-HSA-2132295;Reactome: R-HSA-6811436	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-mediated anterograde transport";"Factors involved in megakaryocyte development and platelet production";"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_8068.1	3	Reactome: R-HSA-6798695;KEGG: 00511+3.2.1.25;Reactome: R-HSA-8853383	"Neutrophil degranulation";"Other glycan degradation";"Lysosomal oligosaccharide catabolism"
JAMg_model_13201.1	9	Reactome: R-HSA-2022928;Reactome: R-HSA-2024096;Reactome: R-HSA-3560783;Reactome: R-HSA-1971475;Reactome: R-HSA-975634;Reactome: R-HSA-3656237;Reactome: R-HSA-3560801;Reactome: R-HSA-4420332;Reactome: R-HSA-3656253	"HS-GAG biosynthesis";"HS-GAG degradation";"Defective B4GALT7 causes EDS, progeroid type";"A tetrasaccharide linker sequence is required for GAG synthesis";"Retinoid metabolism and transport";"Defective EXT2 causes exostoses 2";"Defective B3GAT3 causes JDSSDHD";"Defective B3GALT6 causes EDSP2 and SEMDJL1";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS"
JAMg_model_20559.1	1	Reactome: R-HSA-1368108	"BMAL1:CLOCK,NPAS2 activates circadian gene expression"
JAMg_model_2154.1	1	Reactome: R-HSA-9603798	"Class I peroxisomal membrane protein import"
JAMg_model_12643.1	14	Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-203927;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-426486;Reactome: R-HSA-1912408;Reactome: R-HSA-426496;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723	"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MicroRNA (miRNA) biogenesis";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Small interfering RNA (siRNA) biogenesis";"Pre-NOTCH Transcription and Translation";"Post-transcriptional silencing by small RNAs";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation"
JAMg_model_9895.4	10	MetaCyc: PWY-3821;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6527;MetaCyc: PWY-7344;MetaCyc: PWY-6317;Reactome: R-HSA-5609977;KEGG: 00520+5.1.3.2;MetaCyc: PWY-7328;Reactome: R-HSA-70370;MetaCyc: PWY-6397	"D-galactose detoxification";"Galactose metabolism";"Stachyose degradation";"UDP-alpha-D-galactose biosynthesis";"D-galactose degradation I (Leloir pathway)";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Amino sugar and nucleotide sugar metabolism";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Galactose catabolism";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis"
JAMg_model_17785.9	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_6816.2	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_10096.2	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_3209.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_11689.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_10417.5	1	Reactome: R-HSA-2470946	"Cohesin Loading onto Chromatin"
JAMg_model_6324.1	10	MetaCyc: PWY-8051;MetaCyc: PWY-7587;MetaCyc: PWY-8053;MetaCyc: PWY-5667;KEGG: 00561+2.3.1.15;KEGG: 00564+2.3.1.15;Reactome: R-HSA-1483166;MetaCyc: PWY-6453;MetaCyc: PWY-7411;MetaCyc: PWY-8055	"Anandamide biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"Anandamide biosynthesis II";"CDP-diacylglycerol biosynthesis I";"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Synthesis of PA";"Stigma estolide biosynthesis";"Phosphatidate biosynthesis (yeast)";"Palmitoyl ethanolamide biosynthesis"
JAMg_model_8151.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_2091.1	5	Reactome: R-HSA-73817;KEGG: 00230+6.3.5.3;MetaCyc: PWY-6277;MetaCyc: PWY-6122;MetaCyc: PWY-6121	"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis II";"5-aminoimidazole ribonucleotide biosynthesis I"
JAMg_model_12979.2	18	MetaCyc: PWY-7226;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7184;MetaCyc: PWY-7197;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7210;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7220;MetaCyc: PWY-7198;MetaCyc: PWY-7227;MetaCyc: PWY-7222;MetaCyc: PWY-7224;MetaCyc: PWY-7176;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7205;MetaCyc: PWY-7221;MetaCyc: PWY-7187	"Guanosine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine metabolism";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Adenosine deoxyribonucleotides de novo biosynthesis";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Purine deoxyribonucleosides salvage";"UTP and CTP de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"CMP phosphorylation";"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II"
JAMg_model_9696.2	27	Reactome: R-HSA-3232142;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-4570464;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-5619107;Reactome: R-HSA-168333;Reactome: R-HSA-3371453;Reactome: R-HSA-1169408;Reactome: R-HSA-159230;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-170822;Reactome: R-HSA-168276;Reactome: R-HSA-159236;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377	"SUMOylation of ubiquitinylation proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"SUMOylation of RNA binding proteins";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"SUMOylation of DNA replication proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"NEP/NS2 Interacts with the Cellular Export Machinery";"Regulation of HSF1-mediated heat shock response";"ISG15 antiviral mechanism";"Transport of the SLBP Dependant Mature mRNA";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NS1 Mediated Effects on Host Pathways";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins"
JAMg_model_7088.3	3	Reactome: R-HSA-1855167;KEGG: 04070+2.7.4.24+2.7.4.21;MetaCyc: PWY-6369	"Synthesis of pyrophosphates in the cytosol";"Phosphatidylinositol signaling system";"Inositol diphosphates biosynthesis"
JAMg_model_2984.1	9	Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693607;Reactome: R-HSA-6804756;Reactome: R-HSA-5693568	"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Processing of DNA double-strand break ends";"Regulation of TP53 Activity through Phosphorylation";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_19820.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_15011.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_8896.1	12	Reactome: R-HSA-2644606;Reactome: R-HSA-982772;Reactome: R-HSA-5362798;Reactome: R-HSA-75893;Reactome: R-HSA-2691232;Reactome: R-HSA-177929;Reactome: R-HSA-2122948;Reactome: R-HSA-2894862;Reactome: R-HSA-193692;Reactome: R-HSA-1251985;Reactome: R-HSA-2660826;Reactome: R-HSA-1442490	"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Growth hormone receptor signaling";"Release of Hh-Np from the secreting cell";"TNF signaling";"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Signaling by EGFR";"Activated NOTCH1 Transmits Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Regulated proteolysis of p75NTR";"Nuclear signaling by ERBB4";"Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant";"Collagen degradation"
JAMg_model_1523.7	2	Reactome: R-HSA-1268020;Reactome: R-HSA-8949613	"Mitochondrial protein import";"Cristae formation"
JAMg_model_3539.1	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_21022.7	13	Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_14776.2	2	Reactome: R-HSA-8983711;Reactome: R-HSA-909733	"OAS antiviral response";"Interferon alpha/beta signaling"
JAMg_model_2380.1	19	Reactome: R-HSA-9649948;Reactome: R-HSA-5673001;Reactome: R-HSA-9620244;Reactome: R-HSA-399719;Reactome: R-HSA-6802955;Reactome: R-HSA-6802946;Reactome: R-HSA-6802952;Reactome: R-HSA-5673000;Reactome: R-HSA-9022692;Reactome: R-HSA-877300;Reactome: R-HSA-5578775;Reactome: R-HSA-936837;Reactome: R-HSA-5576892;Reactome: R-HSA-9609736;Reactome: R-HSA-438066;Reactome: R-HSA-3371571;Reactome: R-HSA-111932;Reactome: R-HSA-9617324;Reactome: R-HSA-442982	"Signaling downstream of RAS mutants";"RAF/MAP kinase cascade";"Long-term potentiation";"Trafficking of AMPA receptors";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Signaling by moderate kinase activity BRAF mutants";"Signaling by BRAF and RAF fusions";"RAF activation";"Regulation of MECP2 expression and activity";"Interferon gamma signaling";"Ion homeostasis";"Ion transport by P-type ATPases";"Phase 0 - rapid depolarisation";"Assembly and cell surface presentation of NMDA receptors";"Unblocking of NMDA receptors, glutamate binding and activation";"HSF1-dependent transactivation";"CaMK IV-mediated phosphorylation of CREB";"Negative regulation of NMDA receptor-mediated neuronal transmission";"Ras activation upon Ca2+ influx through NMDA receptor"
JAMg_model_7159.1	2	Reactome: R-HSA-8866907;Reactome: R-HSA-8866904	"Activation of the TFAP2 (AP-2) family of transcription factors";"Negative regulation of activity of TFAP2 (AP-2) family transcription factors"
JAMg_model_20443.2	5	KEGG: 00270+6.3.2.3;Reactome: R-HSA-5579006;MetaCyc: PWY-8043;KEGG: 00480+6.3.2.3;Reactome: R-HSA-174403	"Cysteine and methionine metabolism";"Defective GSS causes Glutathione synthetase deficiency (GSS deficiency)";"Ophthalmate biosynthesis";"Glutathione metabolism";"Glutathione synthesis and recycling"
JAMg_model_21253.1	7	Reactome: R-HSA-72702;Reactome: R-HSA-72662;Reactome: R-HSA-429947;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-166208;Reactome: R-HSA-72649	"Ribosomal scanning and start codon recognition";"Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S";"Deadenylation of mRNA";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"mTORC1-mediated signalling";"Translation initiation complex formation"
JAMg_model_340.4	1	Reactome: R-HSA-427652	"Sodium-coupled phosphate cotransporters"
JAMg_model_13230.4	2	KEGG: 00561+2.7.1.30;MetaCyc: PWY-4261	"Glycerolipid metabolism";"Glycerol degradation I"
JAMg_model_21260.3	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_5070.1	17	MetaCyc: PWY-5695;MetaCyc: PWY-6608;KEGG: 00760+2.4.2.1;MetaCyc: PWY-6627;MetaCyc: PWY-6644;Reactome: R-HSA-74259;MetaCyc: PWY-7179;KEGG: 00240+2.4.2.1;MetaCyc: PWY-6611;MetaCyc: PWY-7179-1;MetaCyc: PWY-4202;MetaCyc: PWY-6609;MetaCyc: PWY-6620;MetaCyc: PWY-5532;Reactome: R-HSA-74217;KEGG: 00230+2.4.2.1;Reactome: R-HSA-6798695	"Inosine 5'-phosphate degradation";"Guanosine nucleotides degradation III";"Nicotinate and nicotinamide metabolism";"Salinosporamide A biosynthesis";"Fluoroacetate and fluorothreonine biosynthesis";"Purine catabolism";"Purine deoxyribonucleosides degradation I";"Pyrimidine metabolism";"Adenine and adenosine salvage V";"Purine deoxyribonucleosides degradation II";"Arsenate detoxification I (mammalian)";"Adenine and adenosine salvage III";"Guanine and guanosine salvage";"Nucleoside and nucleotide degradation (archaea)";"Purine salvage";"Purine metabolism";"Neutrophil degranulation"
JAMg_model_18309.1	18	MetaCyc: PWY-7221;MetaCyc: PWY-7187;MetaCyc: PWY-7205;Reactome: R-HSA-499943;MetaCyc: PWY-6545;MetaCyc: PWY-7176;MetaCyc: PWY-7222;MetaCyc: PWY-7224;MetaCyc: PWY-7227;MetaCyc: PWY-7220;MetaCyc: PWY-7198;MetaCyc: PWY-7210;KEGG: 00240+2.7.4.6;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7197;MetaCyc: PWY-7184;MetaCyc: PWY-7226;KEGG: 00230+2.7.4.6	"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"CMP phosphorylation";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"UTP and CTP de novo biosynthesis";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Purine deoxyribonucleosides salvage";"Adenosine deoxyribonucleotides de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine metabolism";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotide phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism"
JAMg_model_4966.1	1	Reactome: R-HSA-77108	"Utilization of Ketone Bodies"
JAMg_model_11819.1	2	Reactome: R-HSA-3295583;Reactome: R-HSA-418890	"TRP channels";"Role of second messengers in netrin-1 signaling"
JAMg_model_11200.2	1	KEGG: 00970+6.1.1.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_2700.1	14	Reactome: R-HSA-5696397;Reactome: R-HSA-6782210;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-5655862;Reactome: R-HSA-6782135;Reactome: R-HSA-69091;Reactome: R-HSA-5656169;Reactome: R-HSA-110314;Reactome: R-HSA-110320;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-5685942;Reactome: R-HSA-174411	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Translesion synthesis by POLK";"Dual incision in TC-NER";"Polymerase switching";"Termination of translesion DNA synthesis";"Recognition of DNA damage by PCNA-containing replication complex";"Translesion Synthesis by POLH";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"HDR through Homologous Recombination (HRR)";"Polymerase switching on the C-strand of the telomere"
JAMg_model_317.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_12319.1	19	MetaCyc: PWY-6545;MetaCyc: PWY-7205;MetaCyc: PWY-7221;MetaCyc: PWY-7187;Reactome: R-HSA-380270;MetaCyc: PWY-7227;MetaCyc: PWY-7224;MetaCyc: PWY-7222;MetaCyc: PWY-7176;MetaCyc: PWY-7210;KEGG: 00240+2.7.4.6;Reactome: R-HSA-380320;MetaCyc: PWY-7198;MetaCyc: PWY-7220;MetaCyc: PWY-7226;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7184;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7197	"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"CMP phosphorylation";"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Recruitment of mitotic centrosome proteins and complexes";"Adenosine deoxyribonucleotides de novo biosynthesis";"Purine deoxyribonucleosides salvage";"Guanosine deoxyribonucleotides de novo biosynthesis II";"UTP and CTP de novo biosynthesis";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine metabolism";"Recruitment of NuMA to mitotic centrosomes";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotide phosphorylation"
JAMg_model_3080.2	7	KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1	"Human papillomavirus infection";"Thermogenesis";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human cytomegalovirus infection"
JAMg_model_14261.4	3	MetaCyc: PWY-2161;Reactome: R-HSA-196757;KEGG: 00790+6.3.2.17	"Folate polyglutamylation";"Metabolism of folate and pterines";"Folate biosynthesis"
JAMg_model_9755.2	2	Reactome: R-HSA-1483191;Reactome: R-HSA-425366	"Synthesis of PC";"Transport of bile salts and organic acids, metal ions and amine compounds"
JAMg_model_4464.1	2	Reactome: R-HSA-5696394;Reactome: R-HSA-5689603	"DNA Damage Recognition in GG-NER";"UCH proteinases"
JAMg_model_11978.3	2	Reactome: R-HSA-5689880;MetaCyc: PWY-7511	"Ub-specific processing proteases";"Protein ubiquitination"
JAMg_model_18221.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_5394.1	7	Reactome: R-HSA-76071;Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-73780;Reactome: R-HSA-1834949;Reactome: R-HSA-76061;Reactome: R-HSA-76066	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Chain Elongation";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_17281.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_8164.1	6	MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7656;Reactome: R-HSA-9640463;MetaCyc: PWY-7782	"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis"
JAMg_model_15470.1	57	Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4641258;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178	"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Degradation of DVL";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1"
JAMg_model_15595.1	1	Reactome: R-HSA-5625900	"RHO GTPases activate CIT"
JAMg_model_16400.2	3	Reactome: R-HSA-212436;Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"Generic Transcription Pathway";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_16169.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_11779.1	1	KEGG: 00531+3.2.1.35	"Glycosaminoglycan degradation"
JAMg_model_9063.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_19661.1	13	Reactome: R-HSA-156590;MetaCyc: PWY-6842;MetaCyc: PWY-7112;KEGG: 00053+1.8.5.1;KEGG: 00983+2.5.1.18;MetaCyc: PWY-2261;MetaCyc: PWY-4061;MetaCyc: PWY-7533;KEGG: 00480+2.5.1.18+1.8.5.1;Reactome: R-HSA-196836;KEGG: 00980+2.5.1.18;KEGG: 00982+2.5.1.18;MetaCyc: PWY-6370	"Glutathione conjugation";"Glutathione-mediated detoxification II";"4-hydroxy-2-nonenal detoxification";"Ascorbate and aldarate metabolism";"Drug metabolism - other enzymes";"Ascorbate glutathione cycle";"Glutathione-mediated detoxification I";"Gliotoxin biosynthesis";"Glutathione metabolism";"Vitamin C (ascorbate) metabolism";"Metabolism of xenobiotics by cytochrome P450";"Drug metabolism - cytochrome P450";"Ascorbate recycling (cytosolic)"
JAMg_model_8702.4	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_1113.1	1	MetaCyc: PWY-6829	"Trna methylation (yeast)"
JAMg_model_20392.1	4	Reactome: R-HSA-5655862;Reactome: R-HSA-110312;Reactome: R-HSA-5656121;Reactome: R-HSA-5656169	"Translesion synthesis by POLK";"Translesion synthesis by REV1";"Translesion synthesis by POLI";"Termination of translesion DNA synthesis"
JAMg_model_13475.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_7757.2	1	Reactome: R-HSA-418594	"G alpha (i) signalling events"
JAMg_model_4116.1	3	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer"
JAMg_model_9047.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_16767.2	2	Reactome: R-HSA-71336;KEGG: 00710+2.7.1.14	"Pentose phosphate pathway";"Carbon fixation in photosynthetic organisms"
JAMg_model_12880.2	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_2301.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_9243.2	1	Reactome: R-HSA-6785631	"ERBB2 Regulates Cell Motility"
JAMg_model_15097.5	8	Reactome: R-HSA-9639288;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-167590;Reactome: R-HSA-9636467;Reactome: R-HSA-1222556;Reactome: R-HSA-182218;Reactome: R-HSA-983712	"Amino acids regulate mTORC1";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Nef Mediated CD4 Down-regulation";"Blockage of phagosome acidification";"ROS and RNS production in phagocytes";"Nef Mediated CD8 Down-regulation";"Ion channel transport"
JAMg_model_17901.2	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_2842.3	17	Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-983168;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Antigen processing: Ubiquitination & Proteasome degradation";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_8006.1	10	Reactome: R-HSA-4719360;KEGG: 00510+2.4.1.83;MetaCyc: PWY-7922;Reactome: R-HSA-162699;MetaCyc: PWY-7661;Reactome: R-HSA-4719377;Reactome: R-HSA-4717374;MetaCyc: PWY-7921;Reactome: R-HSA-913709;MetaCyc: PWY-7979	"Defective DPM3 causes DPM3-CDG (CDG-1o)";"N-Glycan biosynthesis";"Protein O-mannosylation II (mammals, core M1 and core M2)";"Synthesis of dolichyl-phosphate mannose";"Protein N-glycosylation (Haloferax volcanii)";"Defective DPM2 causes DPM2-CDG (CDG-1u)";"Defective DPM1 causes DPM1-CDG (CDG-1e)";"Protein O-mannosylation I (yeast)";"O-linked glycosylation of mucins";"Protein O-mannosylation III (mammals, core M3)"
JAMg_model_5689.4	2	Reactome: R-HSA-6807505;Reactome: R-HSA-191859	"RNA polymerase II transcribes snRNA genes";"snRNP Assembly"
JAMg_model_4501.1	16	Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-201722;Reactome: R-HSA-5693548;Reactome: R-HSA-9018519;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693571;Reactome: R-HSA-3214847;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554;Reactome: R-HSA-6804756;Reactome: R-HSA-2559586;Reactome: R-HSA-5693579;Reactome: R-HSA-5693565	"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Formation of the beta-catenin:TCF transactivating complex";"Sensing of DNA Double Strand Breaks";"Estrogen-dependent gene expression";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Nonhomologous End-Joining (NHEJ)";"HATs acetylate histones";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Regulation of TP53 Activity through Phosphorylation";"DNA Damage/Telomere Stress Induced Senescence";"Homologous DNA Pairing and Strand Exchange";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_17520.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_440.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_13352.2	24	Reactome: R-HSA-400042;Reactome: R-HSA-416482;Reactome: R-HSA-202040;Reactome: R-HSA-500657;Reactome: R-HSA-418555;Reactome: R-HSA-392451;Reactome: R-HSA-6814122;Reactome: R-HSA-416476;Reactome: R-HSA-8964315;Reactome: R-HSA-8964616;Reactome: R-HSA-420092;Reactome: R-HSA-418597;Reactome: R-HSA-9009391;Reactome: R-HSA-392851;Reactome: R-HSA-4086398;Reactome: R-HSA-392170;Reactome: R-HSA-418217;Reactome: R-HSA-418592;Reactome: R-HSA-456926;Reactome: R-HSA-381676;Reactome: R-HSA-428930;Reactome: R-HSA-432040;Reactome: R-HSA-163359;Reactome: R-HSA-418594	"Adrenaline,noradrenaline inhibits insulin secretion";"G alpha (12/13) signalling events";"G-protein activation";"Presynaptic function of Kainate receptors";"G alpha (s) signalling events";"G beta:gamma signalling through PI3Kgamma";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"G alpha (q) signalling events";"G beta:gamma signalling through BTK";"G beta:gamma signalling through CDC42";"Glucagon-type ligand receptors";"G alpha (z) signalling events";"Extra-nuclear estrogen signaling";"Prostacyclin signalling through prostacyclin receptor";"Ca2+ pathway";"ADP signalling through P2Y purinoceptor 12";"G beta:gamma signalling through PLC beta";"ADP signalling through P2Y purinoceptor 1";"Thrombin signalling through proteinase activated receptors (PARs)";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Thromboxane signalling through TP receptor";"Vasopressin regulates renal water homeostasis via Aquaporins";"Glucagon signaling in metabolic regulation";"G alpha (i) signalling events"
JAMg_model_18100.5	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_17352.1	1	KEGG: 00970+6.1.1.2	"Aminoacyl-tRNA biosynthesis"
JAMg_model_3036.1	6	Reactome: R-HSA-9010553;Reactome: R-HSA-73856;Reactome: R-HSA-975957;Reactome: R-HSA-159236;Reactome: R-HSA-72163;Reactome: R-HSA-72187	"Regulation of expression of SLITs and ROBOs";"RNA Polymerase II Transcription Termination";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing"
JAMg_model_15859.1	4	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;Reactome: R-HSA-180024;KEGG: 05235+3.1.3.16	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"DARPP-32 events";"PD-L1 expression and PD-1 checkpoint pathway in cancer"
JAMg_model_17038.1	2	KEGG: 00770+6.3.2.5;Reactome: R-HSA-196783	"Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis"
JAMg_model_17564.1	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380284;Reactome: R-HSA-5620912	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane"
JAMg_model_3264.2	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_17319.3	3	Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_7288.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_8910.1	2	Reactome: R-HSA-379716;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism"
JAMg_model_2935.1	2	Reactome: R-HSA-419812;Reactome: R-HSA-418555	"Calcitonin-like ligand receptors";"G alpha (s) signalling events"
JAMg_model_326.4	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_650.6	4	KEGG: 00480+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00270+2.5.1.16;Reactome: R-HSA-351202	"Glutathione metabolism";"Arginine and proline metabolism";"Cysteine and methionine metabolism";"Metabolism of polyamines"
JAMg_model_3325.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_1911.1	7	KEGG: 00010+1.2.4.1;Reactome: R-HSA-204174;Reactome: R-HSA-5362517;KEGG: 00620+1.2.4.1;Reactome: R-HSA-389661;Reactome: R-HSA-70268;KEGG: 00020+1.2.4.1	"Glycolysis / Gluconeogenesis";"Regulation of pyruvate dehydrogenase (PDH) complex";"Signaling by Retinoic Acid";"Pyruvate metabolism";"Glyoxylate metabolism and glycine degradation";"Pyruvate metabolism";"Citrate cycle (TCA cycle)"
JAMg_model_2059.7	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_12590.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_17734.8	5	Reactome: R-HSA-6798695;MetaCyc: PWY-5188;KEGG: 00860+4.2.1.24;Reactome: R-HSA-189451;MetaCyc: PWY-5189	"Neutrophil degranulation";"Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis";"Tetrapyrrole biosynthesis II (from glycine)"
JAMg_model_7911.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_10854.1	6	Reactome: R-HSA-5685938;Reactome: R-HSA-176187;Reactome: R-HSA-5693616;Reactome: R-HSA-6804756;Reactome: R-HSA-69473;Reactome: R-HSA-5693607	"HDR through Single Strand Annealing (SSA)";"Activation of ATR in response to replication stress";"Presynaptic phase of homologous DNA pairing and strand exchange";"Regulation of TP53 Activity through Phosphorylation";"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends"
JAMg_model_8808.2	2	Reactome: R-HSA-2022854;Reactome: R-HSA-975577	"Keratan sulfate biosynthesis";"N-Glycan antennae elongation"
JAMg_model_15311.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_16579.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_175.1	6	Reactome: R-HSA-73772;Reactome: R-HSA-73863;Reactome: R-HSA-73762;Reactome: R-HSA-5250924;Reactome: R-HSA-427359;Reactome: R-HSA-427413	"RNA Polymerase I Promoter Escape";"RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation";"B-WICH complex positively regulates rRNA expression";"SIRT1 negatively regulates rRNA expression";"NoRC negatively regulates rRNA expression"
JAMg_model_14911.1	2	Reactome: R-HSA-8936459;Reactome: R-HSA-3214841	"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"PKMTs methylate histone lysines"
JAMg_model_3715.4	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_5566.1	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_19969.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_11569.1	4	Reactome: R-HSA-204005;Reactome: R-HSA-5694530;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695	"COPII-mediated vesicle transport";"Cargo concentration in the ER";"MHC class II antigen presentation";"Neutrophil degranulation"
JAMg_model_3885.1	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_11741.3	24	Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-983189;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833	"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Kinesins";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly"
JAMg_model_7496.2	4	Reactome: R-HSA-982772;Reactome: R-HSA-1170546;Reactome: R-HSA-983231;Reactome: R-HSA-2586552	"Growth hormone receptor signaling";"Prolactin receptor signaling";"Factors involved in megakaryocyte development and platelet production";"Signaling by Leptin"
JAMg_model_19027.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_12281.5	2	Reactome: R-HSA-5205685;Reactome: R-HSA-983231	"Pink/Parkin Mediated Mitophagy";"Factors involved in megakaryocyte development and platelet production"
JAMg_model_13143.1	3	MetaCyc: PWY-6369;Reactome: R-HSA-1855167;KEGG: 04070+2.7.4.24+2.7.4.21	"Inositol diphosphates biosynthesis";"Synthesis of pyrophosphates in the cytosol";"Phosphatidylinositol signaling system"
JAMg_model_8762.2	7	Reactome: R-HSA-201688;Reactome: R-HSA-4641258;Reactome: R-HSA-4086400;Reactome: R-HSA-5368598;Reactome: R-HSA-201681;Reactome: R-HSA-5663220;Reactome: R-HSA-4641262	"WNT mediated activation of DVL";"Degradation of DVL";"PCP/CE pathway";"Negative regulation of TCF-dependent signaling by DVL-interacting proteins";"TCF dependent signaling in response to WNT";"RHO GTPases Activate Formins";"Disassembly of the destruction complex and recruitment of AXIN to the membrane"
JAMg_model_8702.3	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_8327.1	17	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-6790901;Reactome: R-HSA-975956	"Peptide chain elongation";"Viral mRNA Translation";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"rRNA modification in the nucleus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_14505.3	2	Reactome: R-HSA-2022854;Reactome: R-HSA-975577	"Keratan sulfate biosynthesis";"N-Glycan antennae elongation"
JAMg_model_13710.1	5	Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-159231;Reactome: R-HSA-77595;Reactome: R-HSA-73856	"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Transport of Mature mRNA Derived from an Intronless Transcript";"Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination"
JAMg_model_14184.3	3	MetaCyc: PWY-6700;Reactome: R-HSA-6782315;MetaCyc: PWY-8106	"Queuosine biosynthesis I (de novo)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis III (queuosine salvage)"
JAMg_model_14217.1	4	MetaCyc: PWY-7193;KEGG: 00983+2.7.1.48;KEGG: 00240+2.7.1.48;Reactome: R-HSA-73614	"Pyrimidine ribonucleosides salvage I";"Drug metabolism - other enzymes";"Pyrimidine metabolism";"Pyrimidine salvage"
JAMg_model_8384.2	4	Reactome: R-HSA-3371497;Reactome: R-HSA-6807878;Reactome: R-HSA-2132295;Reactome: R-HSA-6811436	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-mediated anterograde transport";"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_20097.1	26	Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-389960;Reactome: R-HSA-983189;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-6811434;Reactome: R-HSA-389977;Reactome: R-HSA-8955332	"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"Formation of tubulin folding intermediates by CCT/TriC";"Kinesins";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"HCMV Early Events";"Mitotic Prometaphase";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"COPI-dependent Golgi-to-ER retrograde traffic";"Post-chaperonin tubulin folding pathway";"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_4235.3	6	KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00600+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00531+3.2.1.23	"Galactose metabolism";"Other glycan degradation";"Xyloglucan degradation II (exoglucanase)";"Sphingolipid metabolism";"Glycosphingolipid biosynthesis - ganglio series";"Glycosaminoglycan degradation"
JAMg_model_4455.1	1	Reactome: R-HSA-6790901	"rRNA modification in the nucleus and cytosol"
JAMg_model_8626.1	2	MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4	"Cellulose degradation II (fungi)";"Starch and sucrose metabolism"
JAMg_model_19848.1	9	KEGG: 00960+2.6.1.5;KEGG: 00270+2.6.1.5;KEGG: 00950+2.6.1.5;KEGG: 00360+2.6.1.5;Reactome: R-HSA-8963684;KEGG: 00400+2.6.1.5;KEGG: 00401+2.6.1.5;KEGG: 00130+2.6.1.5;KEGG: 00350+2.6.1.5	"Tropane, piperidine and pyridine alkaloid biosynthesis";"Cysteine and methionine metabolism";"Isoquinoline alkaloid biosynthesis";"Phenylalanine metabolism";"Tyrosine catabolism";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Novobiocin biosynthesis";"Ubiquinone and other terpenoid-quinone biosynthesis";"Tyrosine metabolism"
JAMg_model_6953.2	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_11739.3	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_16579.4	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_7424.2	1	Reactome: R-HSA-6811434	"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_7784.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_11895.6	5	MetaCyc: PWY-7159;MetaCyc: PWY-5531;KEGG: 00860+4.1.1.37;Reactome: R-HSA-189451;MetaCyc: PWY-7766	"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis";"Heme b biosynthesis IV (Gram-positive bacteria)"
JAMg_model_20334.5	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_6360.2	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_4185.8	2	Reactome: R-HSA-168928;Reactome: R-HSA-70350	"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"Fructose catabolism"
JAMg_model_11890.1	4	Reactome: R-HSA-204005;Reactome: R-HSA-5694530;Reactome: R-HSA-2132295;Reactome: R-HSA-6798695	"COPII-mediated vesicle transport";"Cargo concentration in the ER";"MHC class II antigen presentation";"Neutrophil degranulation"
JAMg_model_13517.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_10246.2	13	KEGG: 00604+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00603+3.2.1.52;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;KEGG: 00511+3.2.1.52;KEGG: 00520+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-1660662;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2024101;Reactome: R-HSA-2022857	"Glycosphingolipid biosynthesis - ganglio series";"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Other glycan degradation";"Amino sugar and nucleotide sugar metabolism";"Anhydromuropeptides recycling II";"Glycosphingolipid metabolism";"Various types of N-glycan biosynthesis";"CS/DS degradation";"Keratan sulfate degradation"
JAMg_model_17775.5	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_19716.1	5	MetaCyc: PWY-7921;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7979;MetaCyc: PWY-7922;KEGG: 00514+2.4.1.109	"Protein O-mannosylation I (yeast)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation III (mammals, core M3)";"Protein O-mannosylation II (mammals, core M1 and core M2)";"Other types of O-glycan biosynthesis"
JAMg_model_2773.1	4	KEGG: 00230+2.7.4.3;Reactome: R-HSA-499943;MetaCyc: PWY-7219;KEGG: 00730+2.7.4.3	"Purine metabolism";"Interconversion of nucleotide di- and triphosphates";"Adenosine ribonucleotides de novo biosynthesis";"Thiamine metabolism"
JAMg_model_359.5	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_11252.7	9	MetaCyc: PWY-7411;Reactome: R-HSA-1483166;MetaCyc: PWY-7385;KEGG: 00564+1.1.1.94;KEGG: 00564+1.1.1.8;MetaCyc: PWY-5981;MetaCyc: PWY-6118;MetaCyc: PWY-7902;MetaCyc: PWY-5667	"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"1,3-propanediol biosynthesis (engineered)";"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"CDP-diacylglycerol biosynthesis III";"Glycerol-3-phosphate shuttle";"Glucosylglycerol biosynthesis";"CDP-diacylglycerol biosynthesis I"
JAMg_model_7638.3	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_9707.1	4	Reactome: R-HSA-381771;Reactome: R-HSA-422085;Reactome: R-HSA-1799339;Reactome: R-HSA-400511	"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"Synthesis, secretion, and deacylation of Ghrelin";"SRP-dependent cotranslational protein targeting to membrane";"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)"
JAMg_model_21267.2	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_8310.1	1	Reactome: R-HSA-420499	"Class C/3 (Metabotropic glutamate/pheromone receptors)"
JAMg_model_5367.1	3	Reactome: R-HSA-1445148;Reactome: R-HSA-264876;Reactome: R-HSA-5620916	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing";"VxPx cargo-targeting to cilium"
JAMg_model_9208.1	16	Reactome: R-HSA-179409;Reactome: R-HSA-983168;Reactome: R-HSA-174154;Reactome: R-HSA-2467813;Reactome: R-HSA-176408;Reactome: R-HSA-8853884;Reactome: R-HSA-174178;Reactome: R-HSA-174084;Reactome: R-HSA-174048;Reactome: R-HSA-176407;Reactome: R-HSA-176409;Reactome: R-HSA-174184;Reactome: R-HSA-69017;Reactome: R-HSA-176412;Reactome: R-HSA-141430;Reactome: R-HSA-2559582	"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation";"APC/C:Cdc20 mediated degradation of Securin";"Separation of Sister Chromatids";"Regulation of APC/C activators between G1/S and early anaphase";"Transcriptional Regulation by VENTX";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Autodegradation of Cdh1 by Cdh1:APC/C";"APC/C:Cdc20 mediated degradation of Cyclin B";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"CDK-mediated phosphorylation and removal of Cdc6";"Phosphorylation of the APC/C";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)"
JAMg_model_1359.3	12	Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1	"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection";"DCC mediated attractive signaling";"Human cytomegalovirus infection";"Thermogenesis";"Rho GTPase cycle";"Human papillomavirus infection";"G alpha (q) signalling events";"NRAGE signals death through JNK";"Relaxin signaling pathway";"mTOR signaling pathway";"PI3K-Akt signaling pathway"
JAMg_model_11589.1	5	MetaCyc: PWY-5667;MetaCyc: PWY-7817;KEGG: 00564+2.7.7.41;KEGG: 04070+2.7.7.41;MetaCyc: PWY-5981	"CDP-diacylglycerol biosynthesis I";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Phosphatidylinositol signaling system";"CDP-diacylglycerol biosynthesis III"
JAMg_model_14925.2	2	KEGG: 00500+3.2.1.28;Reactome: R-HSA-189085	"Starch and sucrose metabolism";"Digestion of dietary carbohydrate"
JAMg_model_7451.1	13	Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis"
JAMg_model_8392.1	2	Reactome: R-HSA-111458;Reactome: R-HSA-9627069	"Formation of apoptosome";"Regulation of the apoptosome activity"
JAMg_model_9210.2	8	Reactome: R-HSA-1445148;Reactome: R-HSA-9613354;Reactome: R-HSA-2151209;Reactome: R-HSA-1632852;Reactome: R-HSA-6804756;Reactome: R-HSA-380972;Reactome: R-HSA-5628897;Reactome: R-HSA-9619483	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Lipophagy";"Activation of PPARGC1A (PGC-1alpha) by phosphorylation";"Macroautophagy";"Regulation of TP53 Activity through Phosphorylation";"Energy dependent regulation of mTOR by LKB1-AMPK";"TP53 Regulates Metabolic Genes";"Activation of AMPK downstream of NMDARs"
JAMg_model_16722.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_2657.2	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_11694.4	11	Reactome: R-HSA-983231;KEGG: 04660+2.7.10.2;Reactome: R-HSA-5693565;Reactome: R-HSA-69231;Reactome: R-HSA-8940973;Reactome: R-HSA-8939236;Reactome: R-HSA-5685938;Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-428890;Reactome: R-HSA-525793	"Factors involved in megakaryocyte development and platelet production";"T cell receptor signaling pathway";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Cyclin D associated events in G1";"RUNX2 regulates osteoblast differentiation";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"HDR through Single Strand Annealing (SSA)";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"Role of ABL in ROBO-SLIT signaling";"Myogenesis"
JAMg_model_1988.1	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_574.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_15999.1	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_1523.6	2	Reactome: R-HSA-8949613;Reactome: R-HSA-1268020	"Cristae formation";"Mitochondrial protein import"
JAMg_model_5303.4	4	MetaCyc: PWY-6129;KEGG: 00510+2.7.1.108;Reactome: R-HSA-4755583;Reactome: R-HSA-446199	"Dolichol and dolichyl phosphate biosynthesis";"N-Glycan biosynthesis";"Defective DOLK causes DOLK-CDG (CDG-1m)";"Synthesis of Dolichyl-phosphate"
JAMg_model_16456.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_1876.1	11	Reactome: R-HSA-2219530;Reactome: R-HSA-6785631;Reactome: R-HSA-1963642;Reactome: R-HSA-6811558;Reactome: R-HSA-1257604;Reactome: R-HSA-5673001;Reactome: R-HSA-1250196;Reactome: R-HSA-8863795;Reactome: R-HSA-1227986;Reactome: R-HSA-9664565;Reactome: R-HSA-8847993	"Constitutive Signaling by Aberrant PI3K in Cancer";"ERBB2 Regulates Cell Motility";"PI3K events in ERBB2 signaling";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"PIP3 activates AKT signaling";"RAF/MAP kinase cascade";"SHC1 events in ERBB2 signaling";"Downregulation of ERBB2 signaling";"Signaling by ERBB2";"Signaling by ERBB2 KD Mutants";"ERBB2 Activates PTK6 Signaling"
JAMg_model_1909.7	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_1520.3	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_10182.1	5	Reactome: R-HSA-2132295;Reactome: R-HSA-6811436;Reactome: R-HSA-3371497;Reactome: R-HSA-6807878;Reactome: R-HSA-983231	"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-mediated anterograde transport";"Factors involved in megakaryocyte development and platelet production"
JAMg_model_10811.1	1	Reactome: R-HSA-9033241	"Peroxisomal protein import"
JAMg_model_11556.2	15	Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593;Reactome: R-HSA-9029569;Reactome: R-HSA-8936459;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-8948700;Reactome: R-HSA-8986944;Reactome: R-HSA-2559580;Reactome: R-HSA-9022692;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-8853884;Reactome: R-HSA-2559585	"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Transcriptional Regulation by MECP2";"Oxidative Stress Induced Senescence";"Regulation of MECP2 expression and activity";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Transcriptional Regulation by VENTX";"Oncogene Induced Senescence"
JAMg_model_561.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_969.1	4	KEGG: 00860+6.1.1.17;MetaCyc: PWY-5188;Reactome: R-HSA-379726;KEGG: 00970+6.1.1.17	"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)";"Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_1630.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_8695.1	2	Reactome: R-HSA-416476;Reactome: R-HSA-375276	"G alpha (q) signalling events";"Peptide ligand-binding receptors"
JAMg_model_13292.1	1	Reactome: R-HSA-4615885	"SUMOylation of DNA replication proteins"
JAMg_model_12508.3	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_2753.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_2603.2	10	MetaCyc: PWY-1861;KEGG: 00680+2.7.1.11;KEGG: 00051+2.7.1.11;Reactome: R-HSA-70171;KEGG: 00030+2.7.1.11;MetaCyc: PWY-7385;KEGG: 00052+2.7.1.11;KEGG: 00010+2.7.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-1042	"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Methane metabolism";"Fructose and mannose metabolism";"Glycolysis";"Pentose phosphate pathway";"1,3-propanediol biosynthesis (engineered)";"Galactose metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)"
JAMg_model_15542.1	31	MetaCyc: PWY-6799;MetaCyc: PWY-8012;MetaCyc: PWY-6519;Reactome: R-HSA-2426168;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-4381;MetaCyc: PWY-6282;MetaCyc: PWY-6113;MetaCyc: PWY-7664;MetaCyc: PWY-5966-1;Reactome: R-HSA-75105;MetaCyc: PWY-5973;MetaCyc: PWY-5147;MetaCyc: PWY-5989;Reactome: R-HSA-9029558;MetaCyc: PWY-5142;Reactome: R-HSA-163765;MetaCyc: PWY-5971;MetaCyc: PWY-8049;MetaCyc: PWY-8047;MetaCyc: PWY-7858;MetaCyc: PWY-5994;Reactome: R-HSA-199220;MetaCyc: PWY-5366;MetaCyc: PWY-7388;MetaCyc: PWY-7723;MetaCyc: PWY-7663;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWYG-321;MetaCyc: PWY-5367;MetaCyc: PWY-7746	"Fatty acid biosynthesis initiation (plant mitochondria)";"Mupirocin biosynthesis";"8-amino-7-oxononanoate biosynthesis I";"Activation of gene expression by SREBF (SREBP)";"Biotin metabolism";"Fatty acid biosynthesis initiation (bacteria and plants)";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Superpathway of mycolate biosynthesis";"Oleate biosynthesis IV (anaerobic)";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Fatty acyl-CoA biosynthesis";"Cis-vaccenate biosynthesis";"Oleate biosynthesis I (plants)";"Stearate biosynthesis II (bacteria and plants)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Acyl-[acyl-carrier protein] thioesterase pathway";"ChREBP activates metabolic gene expression";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Pederin biosynthesis";"Bryostatin biosynthesis";"(5Z)-dodecenoate biosynthesis II";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Vitamin B5 (pantothenate) metabolism";"Palmitoleate biosynthesis II (plants and bacteria)";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Bacterial bioluminescence";"Gondoate biosynthesis (anaerobic)";"Fatty acid biosynthesis";"";"Petroselinate biosynthesis";"Mycobacterial sulfolipid biosynthesis"
JAMg_model_197.1	29	Reactome: R-HSA-427413;Reactome: R-HSA-167160;Reactome: R-HSA-5696400;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-73772;Reactome: R-HSA-674695;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-112382;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-5696395;Reactome: R-HSA-73762;Reactome: R-HSA-167246;Reactome: R-HSA-167158;Reactome: R-HSA-167172;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-77075;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72086;Reactome: R-HSA-76042;Reactome: R-HSA-6781823;Reactome: R-HSA-73863	"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Dual Incision in GG-NER";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Pre-transcription Events";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of Incision Complex in GG-NER";"RNA Polymerase I Transcription Initiation";"Tat-mediated elongation of the HIV-1 transcript";"Formation of the HIV-1 Early Elongation Complex";"Transcription of the HIV genome";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"mRNA Capping";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase I Transcription Termination"
JAMg_model_11389.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_5184.2	2	Reactome: R-HSA-69273;Reactome: R-HSA-8862803	"Cyclin A/B1/B2 associated events during G2/M transition";"Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models"
JAMg_model_5232.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_13265.1	7	MetaCyc: PWY-7219;Reactome: R-HSA-73817;MetaCyc: PWY-7234;KEGG: 00250+4.3.2.2;MetaCyc: PWY-6123;KEGG: 00230+4.3.2.2;MetaCyc: PWY-6124	"Adenosine ribonucleotides de novo biosynthesis";"Purine ribonucleoside monophosphate biosynthesis";"Inosine-5'-phosphate biosynthesis III";"Alanine, aspartate and glutamate metabolism";"Inosine-5'-phosphate biosynthesis I";"Purine metabolism";"Inosine-5'-phosphate biosynthesis II"
JAMg_model_4301.1	8	MetaCyc: PWY-5481;Reactome: R-HSA-70268;KEGG: 00010+1.1.1.27;MetaCyc: PWY-8086;KEGG: 00620+1.1.1.27;KEGG: 00640+1.1.1.27;MetaCyc: PWY-6901;KEGG: 00270+1.1.1.27	"Pyruvate fermentation to (S)-lactate";"Pyruvate metabolism";"Glycolysis / Gluconeogenesis";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Pyruvate metabolism";"Propanoate metabolism";"Superpathway of glucose and xylose degradation";"Cysteine and methionine metabolism"
JAMg_model_18834.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_9194.5	6	KEGG: 00670+2.1.2.3;MetaCyc: PWY-7234;Reactome: R-HSA-73817;KEGG: 00230+3.5.4.10+2.1.2.3;MetaCyc: PWY-6123;MetaCyc: PWY-6124	"One carbon pool by folate";"Inosine-5'-phosphate biosynthesis III";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Inosine-5'-phosphate biosynthesis I";"Inosine-5'-phosphate biosynthesis II"
JAMg_model_16066.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19376.3	5	Reactome: R-HSA-5334118;Reactome: R-HSA-212300;KEGG: 00270+2.1.1.37;Reactome: R-HSA-4655427;Reactome: R-HSA-427413	"DNA methylation";"PRC2 methylates histones and DNA";"Cysteine and methionine metabolism";"SUMOylation of DNA methylation proteins";"NoRC negatively regulates rRNA expression"
JAMg_model_4950.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_19864.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_1010.2	3	Reactome: R-HSA-159236;Reactome: R-HSA-73856;Reactome: R-HSA-72187	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing"
JAMg_model_3175.1	2	Reactome: R-HSA-6807004;Reactome: R-HSA-877312	"Negative regulation of MET activity";"Regulation of IFNG signaling"
JAMg_model_18699.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_3201.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_3560.1	4	MetaCyc: PWY-7822;MetaCyc: PWY-6902;MetaCyc: PWY-6855;KEGG: 00520+3.2.1.14	"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Chitin degradation I (archaea)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_17785.8	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_19719.1	59	Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-611105;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-1169091;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-5628897;Reactome: R-HSA-983168	"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Respiratory electron transport";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Activation of NF-kappaB in B cells";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"TP53 Regulates Metabolic Genes";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_6589.6	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_13391.2	13	Reactome: R-HSA-114508;Reactome: R-HSA-112043;Reactome: R-HSA-983695;Reactome: R-HSA-139853;Reactome: R-HSA-2029485;Reactome: R-HSA-5578775;Reactome: R-HSA-2871809;Reactome: R-HSA-5607763;Reactome: R-HSA-4086398;Reactome: R-HSA-381676;Reactome: R-HSA-422356;Reactome: R-HSA-1489509;Reactome: R-HSA-5218921	"Effects of PIP2 hydrolysis";"PLC beta mediated events";"Antigen activates B Cell Receptor (BCR) leading to generation of second messengers";"Elevation of cytosolic Ca2+ levels";"Role of phospholipids in phagocytosis";"Ion homeostasis";"FCERI mediated Ca+2 mobilization";"CLEC7A (Dectin-1) induces NFAT activation";"Ca2+ pathway";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Regulation of insulin secretion";"DAG and IP3 signaling";"VEGFR2 mediated cell proliferation"
JAMg_model_21063.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-5576893	"Phase 0 - rapid depolarisation";"Phase 2 - plateau phase"
JAMg_model_15875.2	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_9597.1	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_4165.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_2357.1	30	KEGG: 05163+2.7.11.1;Reactome: R-HSA-5628897;Reactome: R-HSA-211163;Reactome: R-HSA-6804758;Reactome: R-HSA-1358803;Reactome: R-HSA-389357;KEGG: 05170+2.7.11.1;Reactome: R-HSA-111447;Reactome: R-HSA-199418;Reactome: R-HSA-198693;Reactome: R-HSA-9634638;Reactome: R-HSA-8941332;Reactome: R-HSA-5218920;Reactome: R-HSA-392451;Reactome: R-HSA-5674400;KEGG: 04714+2.7.11.1;Reactome: R-HSA-6804757;Reactome: R-HSA-69656;Reactome: R-HSA-198323;Reactome: R-HSA-8948751;Reactome: R-HSA-69202;Reactome: R-HSA-1257604;Reactome: R-HSA-9614399;Reactome: R-HSA-6804759;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-389513;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-8876198	"Human cytomegalovirus infection";"TP53 Regulates Metabolic Genes";"AKT-mediated inactivation of FOXO1A";"Regulation of TP53 Activity through Acetylation";"Downregulation of ERBB2:ERBB3 signaling";"CD28 dependent PI3K/Akt signaling";"Human immunodeficiency virus 1 infection";"Activation of BAD and translocation to mitochondria";"Negative regulation of the PI3K/AKT network";"AKT phosphorylates targets in the nucleus";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"RUNX2 regulates genes involved in cell migration";"VEGFR2 mediated vascular permeability";"G beta:gamma signalling through PI3Kgamma";"Constitutive Signaling by AKT1 E17K in Cancer";"Thermogenesis";"Regulation of TP53 Degradation";"Cyclin A:Cdk2-associated events at S phase entry";"AKT phosphorylates targets in the cytosol";"Regulation of PTEN stability and activity";"Cyclin E associated events during G1/S transition";"PIP3 activates AKT signaling";"Regulation of localization of FOXO transcription factors";"Regulation of TP53 Activity through Association with Co-factors";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"CTLA4 inhibitory signaling";"Relaxin signaling pathway";"Human papillomavirus infection";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_2280.2	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_14158.1	6	Reactome: R-HSA-975634;Reactome: R-HSA-3000171;Reactome: R-HSA-6798695;Reactome: R-HSA-2453864;Reactome: R-HSA-2453902;Reactome: R-HSA-977225	"Retinoid metabolism and transport";"Non-integrin membrane-ECM interactions";"Neutrophil degranulation";"Retinoid cycle disease events";"The canonical retinoid cycle in rods (twilight vision)";"Amyloid fiber formation"
JAMg_model_9039.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_16872.1	3	Reactome: R-HSA-429947;Reactome: R-HSA-380994;Reactome: R-HSA-450604	"Deadenylation of mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"KSRP (KHSRP) binds and destabilizes mRNA"
JAMg_model_7825.1	1	Reactome: R-HSA-5689880	"Ub-specific processing proteases"
JAMg_model_10263.1	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_6793.2	6	Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-75105;Reactome: R-HSA-2426168;Reactome: R-HSA-9640463;Reactome: R-HSA-9029558	"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"Fatty acyl-CoA biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Wax biosynthesis";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_6375.7	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_18048.2	5	Reactome: R-HSA-70171;MetaCyc: PWY-5514;MetaCyc: PWY-6906;KEGG: 00520+3.5.99.6;MetaCyc: PWY-6855	"Glycolysis";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Chitin derivatives degradation";"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)"
JAMg_model_19002.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_2132.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_3077.2	33	Reactome: R-HSA-69202;Reactome: R-HSA-76042;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167162;Reactome: R-HSA-69231;Reactome: R-HSA-167200;Reactome: R-HSA-5696395;Reactome: R-HSA-6796648;Reactome: R-HSA-73762;Reactome: R-HSA-75953;Reactome: R-HSA-73776;Reactome: R-HSA-73772;Reactome: R-HSA-6782135;Reactome: R-HSA-69656;Reactome: R-HSA-6781823;Reactome: R-HSA-73863;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-167246;Reactome: R-HSA-167172;Reactome: R-HSA-8939236;Reactome: R-HSA-112382;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-6781827;Reactome: R-HSA-69273;Reactome: R-HSA-427413;Reactome: R-HSA-167160	"Cyclin E associated events during G1/S transition";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Cyclin D associated events in G1";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Formation of Incision Complex in GG-NER";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase I Transcription Initiation";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase I Promoter Escape";"Dual incision in TC-NER";"Cyclin A:Cdk2-associated events at S phase entry";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase I Transcription Termination";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"Tat-mediated elongation of the HIV-1 transcript";"Transcription of the HIV genome";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Formation of RNA Pol II elongation complex";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Cyclin A/B1/B2 associated events during G2/M transition";"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection"
JAMg_model_218.1	4	KEGG: 00910+1.4.1.14;MetaCyc: PWY-6963;KEGG: 00250+1.4.1.14;Reactome: R-HSA-73621	"Nitrogen metabolism";"Ammonia assimilation cycle I";"Alanine, aspartate and glutamate metabolism";"Pyrimidine catabolism"
JAMg_model_9101.1	9	Reactome: R-HSA-5693554;Reactome: R-HSA-5685938;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5693568;Reactome: R-HSA-6804756;Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693607	"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"HDR through Single Strand Annealing (SSA)";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Regulation of TP53 Activity through Phosphorylation";"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Processing of DNA double-strand break ends"
JAMg_model_5433.4	4	Reactome: R-HSA-1222556;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712	"ROS and RNS production in phagocytes";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport"
JAMg_model_12919.2	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_20983.1	4	Reactome: R-HSA-3000171;Reactome: R-HSA-3000178;Reactome: R-HSA-8874081;Reactome: R-HSA-3000157	"Non-integrin membrane-ECM interactions";"ECM proteoglycans";"MET activates PTK2 signaling";"Laminin interactions"
JAMg_model_3232.1	4	Reactome: R-HSA-352230;Reactome: R-HSA-5660862;Reactome: R-HSA-210991;Reactome: R-HSA-71240	"Amino acid transport across the plasma membrane";"Defective SLC7A7 causes lysinuric protein intolerance (LPI)";"Basigin interactions";"Tryptophan catabolism"
JAMg_model_10892.1	3	KEGG: 00790+3.1.3.1;KEGG: 00730+3.1.3.1;MetaCyc: PWY-5491	"Folate biosynthesis";"Thiamine metabolism";"Diethylphosphate degradation"
JAMg_model_15466.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_13503.4	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_13393.1	13	Reactome: R-HSA-2029485;Reactome: R-HSA-2871809;Reactome: R-HSA-5578775;Reactome: R-HSA-5607763;Reactome: R-HSA-4086398;Reactome: R-HSA-114508;Reactome: R-HSA-112043;Reactome: R-HSA-983695;Reactome: R-HSA-139853;Reactome: R-HSA-1489509;Reactome: R-HSA-5218921;Reactome: R-HSA-381676;Reactome: R-HSA-422356	"Role of phospholipids in phagocytosis";"FCERI mediated Ca+2 mobilization";"Ion homeostasis";"CLEC7A (Dectin-1) induces NFAT activation";"Ca2+ pathway";"Effects of PIP2 hydrolysis";"PLC beta mediated events";"Antigen activates B Cell Receptor (BCR) leading to generation of second messengers";"Elevation of cytosolic Ca2+ levels";"DAG and IP3 signaling";"VEGFR2 mediated cell proliferation";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Regulation of insulin secretion"
JAMg_model_7564.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_3500.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_8371.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_957.1	4	Reactome: R-HSA-983189;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295;Reactome: R-HSA-5625970	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation";"RHO GTPases activate KTN1"
JAMg_model_14799.1	3	Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837	"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases"
JAMg_model_16335.1	1	Reactome: R-HSA-8964572	"Lipid particle organization"
JAMg_model_4455.2	1	Reactome: R-HSA-6790901	"rRNA modification in the nucleus and cytosol"
JAMg_model_4381.1	5	Reactome: R-HSA-6783310;Reactome: R-HSA-6782135;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-5696400	"Fanconi Anemia Pathway";"Dual incision in TC-NER";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Dual Incision in GG-NER"
JAMg_model_4083.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_19907.2	2	Reactome: R-HSA-5576892;Reactome: R-HSA-5576893	"Phase 0 - rapid depolarisation";"Phase 2 - plateau phase"
JAMg_model_1770.3	2	Reactome: R-HSA-5576893;Reactome: R-HSA-5576892	"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation"
JAMg_model_3899.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_361.3	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_2486.1	2	Reactome: R-HSA-5628897;Reactome: R-HSA-611105	"TP53 Regulates Metabolic Genes";"Respiratory electron transport"
JAMg_model_18749.1	1	Reactome: R-HSA-69273	"Cyclin A/B1/B2 associated events during G2/M transition"
JAMg_model_16566.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_8910.9	2	Reactome: R-HSA-379716;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism"
JAMg_model_12313.2	1	Reactome: R-HSA-6787450	"tRNA modification in the mitochondrion"
JAMg_model_9854.1	3	MetaCyc: PWY-7533;Reactome: R-HSA-5423646;Reactome: R-HSA-2142691	"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_15980.1	10	Reactome: R-HSA-111459;Reactome: R-HSA-5628897;Reactome: R-HSA-111457;Reactome: R-HSA-2151201;Reactome: R-HSA-9627069;Reactome: R-HSA-611105;Reactome: R-HSA-111463;Reactome: R-HSA-111464;Reactome: R-HSA-111458;Reactome: R-HSA-3299685	"Activation of caspases through apoptosome-mediated cleavage";"TP53 Regulates Metabolic Genes";"Release of apoptotic factors from the mitochondria";"Transcriptional activation of mitochondrial biogenesis";"Regulation of the apoptosome activity";"Respiratory electron transport";"SMAC (DIABLO) binds to IAPs";"SMAC(DIABLO)-mediated dissociation of IAP:caspase complexes";"Formation of apoptosome";"Detoxification of Reactive Oxygen Species"
JAMg_model_390.1	3	Reactome: R-HSA-5250924;Reactome: R-HSA-72163;Reactome: R-HSA-72165	"B-WICH complex positively regulates rRNA expression";"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_10357.1	5	Reactome: R-HSA-6798695;Reactome: R-HSA-432722;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-6811440	"Neutrophil degranulation";"Golgi Associated Vesicle Biogenesis";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_17664.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_2102.1	16	Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553	"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Peptide chain elongation";"Viral mRNA Translation";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs"
JAMg_model_5960.1	2	Reactome: R-HSA-163210;Reactome: R-HSA-8949613	"Formation of ATP by chemiosmotic coupling";"Cristae formation"
JAMg_model_19039.3	3	Reactome: R-HSA-8866654;MetaCyc: PWY-7511;Reactome: R-HSA-110314	"E3 ubiquitin ligases ubiquitinate target proteins";"Protein ubiquitination";"Recognition of DNA damage by PCNA-containing replication complex"
JAMg_model_18865.3	6	Reactome: R-HSA-977347;KEGG: 00750+2.6.1.52;KEGG: 00260+2.6.1.52;KEGG: 00680+2.6.1.52;KEGG: 00270+2.6.1.52;MetaCyc: PWY-8010	"Serine biosynthesis";"Vitamin B6 metabolism";"Glycine, serine and threonine metabolism";"Methane metabolism";"Cysteine and methionine metabolism";"L-cysteine biosynthesis IX (Trichomonas vaginalis)"
JAMg_model_20941.2	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_3303.1	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_15154.5	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_14654.3	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_12827.3	2	Reactome: R-HSA-6783310;Reactome: R-HSA-5693568	"Fanconi Anemia Pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_18227.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_9138.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_1216.3	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_3090.1	3	Reactome: R-HSA-5620916;Reactome: R-HSA-1445148;Reactome: R-HSA-264876	"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing"
JAMg_model_19084.2	5	Reactome: R-HSA-73856;Reactome: R-HSA-159231;Reactome: R-HSA-77595;Reactome: R-HSA-72163;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA Derived from an Intronless Transcript";"Processing of Intronless Pre-mRNAs";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing"
JAMg_model_18220.1	17	Reactome: R-HSA-75955;Reactome: R-HSA-167246;KEGG: 04660+3.1.3.16;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167238;Reactome: R-HSA-167152;KEGG: 04658+3.1.3.16;Reactome: R-HSA-674695;Reactome: R-HSA-167200;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-6796648;KEGG: 05235+3.1.3.16;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167242	"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"T cell receptor signaling pathway";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"Th1 and Th2 cell differentiation";"RNA Polymerase II Pre-transcription Events";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Abortive elongation of HIV-1 transcript in the absence of Tat"
JAMg_model_15784.3	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_5303.6	4	KEGG: 00510+2.7.1.108;MetaCyc: PWY-6129;Reactome: R-HSA-4755583;Reactome: R-HSA-446199	"N-Glycan biosynthesis";"Dolichol and dolichyl phosphate biosynthesis";"Defective DOLK causes DOLK-CDG (CDG-1m)";"Synthesis of Dolichyl-phosphate"
JAMg_model_21167.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_7723.1	3	Reactome: R-HSA-420029;MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Tight junction interactions";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_16243.1	1	Reactome: R-HSA-1483148	"Synthesis of PG"
JAMg_model_5870.2	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_19531.2	9	MetaCyc: PWY-5757;MetaCyc: PWY-6682;MetaCyc: PWY-7510;KEGG: 00440+4.1.1.82;MetaCyc: PWY-6322;MetaCyc: PWY-6839;KEGG: 00998+4.1.1.82;MetaCyc: PWY-7769;MetaCyc: PWY-8067	"Fosfomycin biosynthesis";"Dehydrophos biosynthesis";"Rhizocticin A and B biosynthesis";"Phosphonate and phosphinate metabolism";"Phosphinothricin tripeptide biosynthesis";"2-aminoethylphosphonate biosynthesis";"Biosynthesis of various secondary metabolites - part 2";"Phosalacine biosynthesis";"Methylphosphonate biosynthesis"
JAMg_model_13489.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_12635.1	3	KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1;Reactome: R-HSA-73843	"Pentose phosphate pathway";"Purine metabolism";"5-Phosphoribose 1-diphosphate biosynthesis"
JAMg_model_14777.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_8783.3	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_6657.1	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811438	"COPI-mediated anterograde transport";"Intra-Golgi traffic"
JAMg_model_10489.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_20180.1	8	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-418889;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Caspase activation via Dependence Receptors in the absence of ligand";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection"
JAMg_model_10003.3	9	MetaCyc: PWY-8052;MetaCyc: PWY-6351;Reactome: R-HSA-416476;Reactome: R-HSA-112043;KEGG: 04070+3.1.4.11;MetaCyc: PWY-7039;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;KEGG: 00562+3.1.4.11	"2-arachidonoylglycerol biosynthesis";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"G alpha (q) signalling events";"PLC beta mediated events";"Phosphatidylinositol signaling system";"Phosphatidate metabolism, as a signaling molecule";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"Inositol phosphate metabolism"
JAMg_model_9084.1	2	Reactome: R-HSA-6807505;Reactome: R-HSA-72163	"RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway"
JAMg_model_15548.1	13	MetaCyc: PWY-7533;MetaCyc: PWY-4061;MetaCyc: PWY-2261;KEGG: 00983+2.5.1.18;KEGG: 00053+1.8.5.1;MetaCyc: PWY-7112;MetaCyc: PWY-6842;Reactome: R-HSA-156590;MetaCyc: PWY-6370;KEGG: 00982+2.5.1.18;KEGG: 00980+2.5.1.18;Reactome: R-HSA-196836;KEGG: 00480+2.5.1.18+1.8.5.1	"Gliotoxin biosynthesis";"Glutathione-mediated detoxification I";"Ascorbate glutathione cycle";"Drug metabolism - other enzymes";"Ascorbate and aldarate metabolism";"4-hydroxy-2-nonenal detoxification";"Glutathione-mediated detoxification II";"Glutathione conjugation";"Ascorbate recycling (cytosolic)";"Drug metabolism - cytochrome P450";"Metabolism of xenobiotics by cytochrome P450";"Vitamin C (ascorbate) metabolism";"Glutathione metabolism"
JAMg_model_8298.3	4	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-1912420	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Pre-NOTCH Processing in Golgi"
JAMg_model_1960.2	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_10201.4	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_19621.1	7	MetaCyc: PWY-7118;KEGG: 00630+2.3.3.9;MetaCyc: PWY-7854;MetaCyc: PWY-7295;MetaCyc: PWY-7294;KEGG: 00620+2.3.3.9;MetaCyc: PWY-6969	"Chitin degradation to ethanol";"Glyoxylate and dicarboxylate metabolism";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"L-arabinose degradation IV";"D-xylose degradation IV";"Pyruvate metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_6075.3	24	Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-983189;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434	"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Kinesins";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_6498.1	2	Reactome: R-HSA-3238698;Reactome: R-HSA-373080	"WNT ligand biogenesis and trafficking";"Class B/2 (Secretin family receptors)"
JAMg_model_4720.2	3	Reactome: R-HSA-110328;Reactome: R-HSA-110329;Reactome: R-HSA-110357	"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Cleavage of the damaged pyrimidine";"Displacement of DNA glycosylase by APEX1"
JAMg_model_3670.1	1	Reactome: R-HSA-5368286	"Mitochondrial translation initiation"
JAMg_model_15981.1	5	Reactome: R-HSA-73762;Reactome: R-HSA-73863;Reactome: R-HSA-73772;Reactome: R-HSA-427413;Reactome: R-HSA-5250924	"RNA Polymerase I Transcription Initiation";"RNA Polymerase I Transcription Termination";"RNA Polymerase I Promoter Escape";"NoRC negatively regulates rRNA expression";"B-WICH complex positively regulates rRNA expression"
JAMg_model_6042.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_8992.4	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_17459.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_7656.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_907.15	8	Reactome: R-HSA-5140745;Reactome: R-HSA-5099900;Reactome: R-HSA-3928665;Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4";"EPH-ephrin mediated repulsion of cells";"Gap junction degradation";"Lysosome Vesicle Biogenesis";"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_1812.1	1	Reactome: R-HSA-4551638	"SUMOylation of chromatin organization proteins"
JAMg_model_11773.1	2	Reactome: R-HSA-416476;Reactome: R-HSA-380095	"G alpha (q) signalling events";"Tachykinin receptors bind tachykinins"
JAMg_model_2273.1	2	KEGG: 00520+2.4.1.16;MetaCyc: PWY-6981	"Amino sugar and nucleotide sugar metabolism";"Chitin biosynthesis"
JAMg_model_7587.3	2	Reactome: R-HSA-2032785;Reactome: R-HSA-8951671	"YAP1- and WWTR1 (TAZ)-stimulated gene expression";"RUNX3 regulates YAP1-mediated transcription"
JAMg_model_9881.1	5	MetaCyc: PWY-5189;Reactome: R-HSA-189451;MetaCyc: PWY-7536;KEGG: 00260+2.3.1.37;KEGG: 00860+2.3.1.37	"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis";"2-amino-3-hydroxycyclopent-2-enone biosynthesis";"Glycine, serine and threonine metabolism";"Porphyrin and chlorophyll metabolism"
JAMg_model_8478.1	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_4840.2	10	Reactome: R-HSA-3899300;Reactome: R-HSA-8936459;Reactome: R-HSA-9615017;Reactome: R-HSA-400206;Reactome: R-HSA-9022692;Reactome: R-HSA-427413;Reactome: R-HSA-9022538;Reactome: R-HSA-9022699;Reactome: R-HSA-9022702;Reactome: R-HSA-983231	"SUMOylation of transcription cofactors";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Regulation of lipid metabolism by PPARalpha";"Regulation of MECP2 expression and activity";"NoRC negatively regulates rRNA expression";"Loss of MECP2 binding ability to 5mC-DNA";"MECP2 regulates neuronal receptors and channels";"MECP2 regulates transcription of neuronal ligands";"Factors involved in megakaryocyte development and platelet production"
JAMg_model_10398.1	3	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels"
JAMg_model_9184.5	6	MetaCyc: PWY-7817;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;Reactome: R-HSA-114508;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Effects of PIP2 hydrolysis";"Phosphatidylinositol signaling system";"Glycerolipid metabolism"
JAMg_model_10024.5	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_10003.4	9	KEGG: 04070+3.1.4.11;Reactome: R-HSA-112043;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;KEGG: 00562+3.1.4.11;MetaCyc: PWY-7039;MetaCyc: PWY-6351;MetaCyc: PWY-8052;Reactome: R-HSA-416476	"Phosphatidylinositol signaling system";"PLC beta mediated events";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"Inositol phosphate metabolism";"Phosphatidate metabolism, as a signaling molecule";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"G alpha (q) signalling events"
JAMg_model_3009.4	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_4998.4	1	Reactome: R-HSA-162658	"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_21161.2	7	Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_8159.2	12	MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00680+4.1.2.13;KEGG: 00710+4.1.2.13;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385;KEGG: 00030+4.1.2.13;Reactome: R-HSA-70171;MetaCyc: PWY-6142;MetaCyc: PWY-1861	"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Methane metabolism";"Carbon fixation in photosynthetic organisms";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Pentose phosphate pathway";"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)"
JAMg_model_12635.4	3	KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1;Reactome: R-HSA-73843	"Pentose phosphate pathway";"Purine metabolism";"5-Phosphoribose 1-diphosphate biosynthesis"
JAMg_model_4539.2	1	Reactome: R-HSA-430039	"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_5943.1	3	MetaCyc: PWY-7807;MetaCyc: PWY-7805;KEGG: 00190+3.6.1.1	"Glyphosate degradation III";"(aminomethyl)phosphonate degradation";"Oxidative phosphorylation"
JAMg_model_14065.1	2	Reactome: R-HSA-5620924;Reactome: R-HSA-5610787	"Intraflagellar transport";"Hedgehog 'off' state"
JAMg_model_2077.1	33	Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-68877;Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-3232142;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-4570464;Reactome: R-HSA-5663220;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-159236;Reactome: R-HSA-170822;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-1169408;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-168333;Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-4551638;Reactome: R-HSA-168276;Reactome: R-HSA-159227;Reactome: R-HSA-159231;Reactome: R-HSA-3301854	"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"Mitotic Prometaphase";"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of ubiquitinylation proteins";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"snRNP Assembly";"SUMOylation of RNA binding proteins";"RHO GTPases Activate Formins";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"ISG15 antiviral mechanism";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"NEP/NS2 Interacts with the Cellular Export Machinery";"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"SUMOylation of chromatin organization proteins";"NS1 Mediated Effects on Host Pathways";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly"
JAMg_model_18048.6	5	MetaCyc: PWY-5514;Reactome: R-HSA-70171;MetaCyc: PWY-6906;MetaCyc: PWY-6855;KEGG: 00520+3.5.99.6	"UDP-N-acetyl-D-galactosamine biosynthesis II";"Glycolysis";"Chitin derivatives degradation";"Chitin degradation I (archaea)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_7638.6	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_9947.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_5828.1	6	Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72706	"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_3009.3	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_15154.3	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_4469.2	33	Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-68877;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-159236;Reactome: R-HSA-170822;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-1169408;Reactome: R-HSA-168333;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-4551638;Reactome: R-HSA-168276;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-159227	"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"Mitotic Prometaphase";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"ISG15 antiviral mechanism";"NEP/NS2 Interacts with the Cellular Export Machinery";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"SUMOylation of chromatin organization proteins";"NS1 Mediated Effects on Host Pathways";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of the SLBP independent Mature mRNA"
JAMg_model_3305.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-1660662	"Neutrophil degranulation";"Glycosphingolipid metabolism"
JAMg_model_12148.2	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_12928.3	14	KEGG: 00720+1.3.5.1;MetaCyc: PWY-6728;MetaCyc: PWY-561;MetaCyc: PWY-4302;MetaCyc: PWY-5690;KEGG: 00020+1.3.5.1;MetaCyc: PWY-3781;Reactome: R-HSA-611105;Reactome: R-HSA-71403;KEGG: 00190+1.3.5.1;MetaCyc: PWY-7279;MetaCyc: PWY-7254;KEGG: 00650+1.3.5.1;MetaCyc: PWY-6969	"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Superpathway of glyoxylate cycle and fatty acid degradation";"Aerobic respiration III (alternative oxidase pathway)";"TCA cycle II (plants and fungi)";"Citrate cycle (TCA cycle)";"Aerobic respiration I (cytochrome c)";"Respiratory electron transport";"Citric acid cycle (TCA cycle)";"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"TCA cycle VII (acetate-producers)";"Butanoate metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_11757.5	6	Reactome: R-HSA-8874211;Reactome: R-HSA-8957275;Reactome: R-HSA-1655829;Reactome: R-HSA-8963889;Reactome: R-HSA-381426;Reactome: R-HSA-381033	"CREB3 factors activate genes";"Post-translational protein phosphorylation";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"Assembly of active LPL and LIPC lipase complexes";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"ATF6 (ATF6-alpha) activates chaperones"
JAMg_model_5555.1	7	Reactome: R-HSA-1660499;MetaCyc: PWY-6351;KEGG: 00562+2.7.1.67;Reactome: R-HSA-1660516;Reactome: R-HSA-1660514;KEGG: 04070+2.7.1.67;MetaCyc: PWY-6352	"Synthesis of PIPs at the plasma membrane";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Inositol phosphate metabolism";"Synthesis of PIPs at the early endosome membrane";"Synthesis of PIPs at the Golgi membrane";"Phosphatidylinositol signaling system";"3-phosphoinositide biosynthesis"
JAMg_model_11912.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_12780.2	2	Reactome: R-HSA-3214815;Reactome: R-HSA-427413	"HDACs deacetylate histones";"NoRC negatively regulates rRNA expression"
JAMg_model_5118.1	4	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-749476;Reactome: R-HSA-76071	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 3 Promoter"
JAMg_model_4646.1	2	Reactome: R-HSA-181429;Reactome: R-HSA-212676	"Serotonin Neurotransmitter Release Cycle";"Dopamine Neurotransmitter Release Cycle"
JAMg_model_5782.1	4	Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"ROS and RNS production in phagocytes";"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_17781.1	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_8210.6	6	Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-72689;Reactome: R-HSA-72649	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Formation of a pool of free 40S subunits";"Translation initiation complex formation"
JAMg_model_8095.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_15541.1	6	KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463	"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis"
JAMg_model_17281.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_9277.2	3	Reactome: R-HSA-9033241;Reactome: R-HSA-8866654;Reactome: R-HSA-9603798	"Peroxisomal protein import";"E3 ubiquitin ligases ubiquitinate target proteins";"Class I peroxisomal membrane protein import"
JAMg_model_16715.1	16	Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_5088.5	16	MetaCyc: PWY-2221;MetaCyc: PWY-7124;MetaCyc: PWY-7218;MetaCyc: PWY-1042;MetaCyc: PWY-6901;KEGG: 00010+4.2.1.11;MetaCyc: PWY-6142;MetaCyc: PWY-5723;Reactome: R-HSA-70263;MetaCyc: PWY-6886;MetaCyc: PWY-8004;MetaCyc: PWY-1622;MetaCyc: PWY-5484;KEGG: 00680+4.2.1.11;MetaCyc: PWY-7003;Reactome: R-HSA-70171	"Entner-Doudoroff pathway III (semi-phosphorylative)";"Ethylene biosynthesis V (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Glycolysis / Gluconeogenesis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Rubisco shunt";"Gluconeogenesis";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Formaldehyde assimilation I (serine pathway)";"Glycolysis II (from fructose 6-phosphate)";"Methane metabolism";"Glycerol degradation to butanol";"Glycolysis"
JAMg_model_16961.1	3	Reactome: R-HSA-76071;Reactome: R-HSA-749476;Reactome: R-HSA-6807505	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA polymerase II transcribes snRNA genes"
JAMg_model_15517.1	2	KEGG: 00051+2.7.1.105+3.1.3.46;Reactome: R-HSA-9634600	"Fructose and mannose metabolism";"Regulation of glycolysis by fructose 2,6-bisphosphate metabolism"
JAMg_model_1200.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_5361.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_10211.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_16428.4	4	MetaCyc: PWY-6803;KEGG: 00564+3.1.1.32;KEGG: 00592+3.1.1.32;MetaCyc: PWY-8051	"Phosphatidylcholine acyl editing";"Glycerophospholipid metabolism";"alpha-Linolenic acid metabolism";"Anandamide biosynthesis I"
JAMg_model_3523.3	1	MetaCyc: PWY-6308	"L-cysteine biosynthesis II (tRNA-dependent)"
JAMg_model_479.2	11	Reactome: R-HSA-164378;Reactome: R-HSA-418555;Reactome: R-HSA-170660;KEGG: 00230+4.6.1.1;Reactome: R-HSA-432040;Reactome: R-HSA-418594;Reactome: R-HSA-163359;Reactome: R-HSA-418597;Reactome: R-HSA-170670;Reactome: R-HSA-163615;Reactome: R-HSA-5610787	"PKA activation in glucagon signalling";"G alpha (s) signalling events";"Adenylate cyclase activating pathway";"Purine metabolism";"Vasopressin regulates renal water homeostasis via Aquaporins";"G alpha (i) signalling events";"Glucagon signaling in metabolic regulation";"G alpha (z) signalling events";"Adenylate cyclase inhibitory pathway";"PKA activation";"Hedgehog 'off' state"
JAMg_model_17659.1	6	Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-68877;Reactome: R-HSA-9648025	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation"
JAMg_model_19417.1	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_4961.1	5	Reactome: R-HSA-6807004;Reactome: R-HSA-8856828;Reactome: R-HSA-8875360;Reactome: R-HSA-182971;Reactome: R-HSA-8856825	"Negative regulation of MET activity";"Clathrin-mediated endocytosis";"InlB-mediated entry of Listeria monocytogenes into host cell";"EGFR downregulation";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_2795.1	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_15784.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_10886.2	1	Reactome: R-HSA-204626	"Hypusine synthesis from eIF5A-lysine"
JAMg_model_907.3	8	Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-196025;Reactome: R-HSA-432720;Reactome: R-HSA-190873;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-3928665	"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"Formation of annular gap junctions";"Lysosome Vesicle Biogenesis";"Gap junction degradation";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"EPH-ephrin mediated repulsion of cells"
JAMg_model_6612.4	1	Reactome: R-HSA-5601884	"PIWI-interacting RNA (piRNA) biogenesis"
JAMg_model_14654.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_7200.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_3667.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_1909.6	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_13747.1	29	Reactome: R-HSA-77075;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167246;Reactome: R-HSA-73863;Reactome: R-HSA-6781823;Reactome: R-HSA-76042;Reactome: R-HSA-72086;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-674695;Reactome: R-HSA-73772;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-5696400;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-73762;Reactome: R-HSA-5696395;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-75953;Reactome: R-HSA-112382	"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase I Transcription Termination";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"mRNA Capping";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"Dual Incision in GG-NER";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"RNA Polymerase I Transcription Initiation";"Formation of Incision Complex in GG-NER";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Transcription Initiation";"Formation of RNA Pol II elongation complex"
JAMg_model_7197.2	2	KEGG: 00240+3.6.1.23;KEGG: 00983+3.6.1.23	"Pyrimidine metabolism";"Drug metabolism - other enzymes"
JAMg_model_9889.2	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_5588.2	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_361.5	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_8379.1	5	KEGG: 00983+2.4.2.3;MetaCyc: PWY-5532;KEGG: 00240+2.4.2.3;Reactome: R-HSA-73621;Reactome: R-HSA-73614	"Drug metabolism - other enzymes";"Nucleoside and nucleotide degradation (archaea)";"Pyrimidine metabolism";"Pyrimidine catabolism";"Pyrimidine salvage"
JAMg_model_8794.1	6	MetaCyc: PWY-5530;KEGG: 00053+3.1.1.17;KEGG: 00930+3.1.1.17;KEGG: 00030+3.1.1.17;MetaCyc: PWY-7165;MetaCyc: PWY-2221	"Sorbitol biosynthesis II";"Ascorbate and aldarate metabolism";"Caprolactam degradation";"Pentose phosphate pathway";"L-ascorbate biosynthesis VI (engineered pathway)";"Entner-Doudoroff pathway III (semi-phosphorylative)"
JAMg_model_9697.1	7	Reactome: R-HSA-69202;Reactome: R-HSA-156711;Reactome: R-HSA-1538133;Reactome: R-HSA-69656;Reactome: R-HSA-1362277;Reactome: R-HSA-1362300;Reactome: R-HSA-69205	"Cyclin E associated events during G1/S transition";"Polo-like kinase mediated events";"G0 and Early G1";"Cyclin A:Cdk2-associated events at S phase entry";"Transcription of E2F targets under negative control by DREAM complex";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"G1/S-Specific Transcription"
JAMg_model_11904.5	2	MetaCyc: PWY-5386;KEGG: 00620+3.1.2.6	"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_19141.5	1	Reactome: R-HSA-6814848	"Glycerophospholipid catabolism"
JAMg_model_19031.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_12221.3	1	Reactome: R-HSA-5610787	"Hedgehog 'off' state"
JAMg_model_20738.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_13746.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_3908.1	22	Reactome: R-HSA-5673000;Reactome: R-HSA-196299;Reactome: R-HSA-389513;Reactome: R-HSA-5467340;Reactome: R-HSA-5339716;Reactome: R-HSA-432142;Reactome: R-HSA-6811558;Reactome: R-HSA-195253;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-5358751;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-5358747;Reactome: R-HSA-2467813;Reactome: R-HSA-4641262;Reactome: R-HSA-5358752;Reactome: R-HSA-68877;Reactome: R-HSA-5467348;Reactome: R-HSA-5358749;Reactome: R-HSA-5675221;Reactome: R-HSA-5467337	"RAF activation";"Beta-catenin phosphorylation cascade";"CTLA4 inhibitory signaling";"AXIN missense mutants destabilize the destruction complex";"Misspliced GSK3beta mutants stabilize beta-catenin";"Platelet sensitization by LDL";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Degradation of beta-catenin by the destruction complex";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"S45 mutants of beta-catenin aren't phosphorylated";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"S33 mutants of beta-catenin aren't phosphorylated";"Separation of Sister Chromatids";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"T41 mutants of beta-catenin aren't phosphorylated";"Mitotic Prometaphase";"Truncations of AMER1 destabilize the destruction complex";"S37 mutants of beta-catenin aren't phosphorylated";"Negative regulation of MAPK pathway";"APC truncation mutants have impaired AXIN binding"
JAMg_model_7374.3	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_12345.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_18902.3	3	Reactome: R-HSA-156590;KEGG: 00680+3.1.2.12;MetaCyc: PWY-1801	"Glutathione conjugation";"Methane metabolism";"Formaldehyde oxidation II (glutathione-dependent)"
JAMg_model_14046.1	2	Reactome: R-HSA-5610787;Reactome: R-HSA-5620924	"Hedgehog 'off' state";"Intraflagellar transport"
JAMg_model_8481.2	2	Reactome: R-HSA-203927;Reactome: R-HSA-8986944	"MicroRNA (miRNA) biogenesis";"Transcriptional Regulation by MECP2"
JAMg_model_17505.1	18	Reactome: R-HSA-1482922;Reactome: R-HSA-1482925;MetaCyc: PWY-7416;MetaCyc: PWY-7417;KEGG: 00592+3.1.1.4;Reactome: R-HSA-1482788;MetaCyc: PWY-8051;KEGG: 00564+3.1.1.4;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7409;Reactome: R-HSA-1482801;MetaCyc: PWY-6803;Reactome: R-HSA-1483166;Reactome: R-HSA-1482839;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7783;KEGG: 00591+3.1.1.4;MetaCyc: PWY-8053	"Acyl chain remodelling of PI";"Acyl chain remodelling of PG";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Phospholipid remodeling (phosphatidate, yeast)";"alpha-Linolenic acid metabolism";"Acyl chain remodelling of PC";"Anandamide biosynthesis I";"Glycerophospholipid metabolism";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Acyl chain remodelling of PS";"Phosphatidylcholine acyl editing";"Synthesis of PA";"Acyl chain remodelling of PE";"Ether lipid metabolism";"Plasmalogen degradation";"Linoleic acid metabolism";"Anandamide biosynthesis II"
JAMg_model_2602.1	1	Reactome: R-HSA-1971475	"A tetrasaccharide linker sequence is required for GAG synthesis"
JAMg_model_19123.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-901032	"Protein ubiquitination";"ER Quality Control Compartment (ERQC)"
JAMg_model_9043.1	9	Reactome: R-HSA-2151201;Reactome: R-HSA-1368108;Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-2426168;Reactome: R-HSA-1368082;Reactome: R-HSA-400253;Reactome: R-HSA-5617472;Reactome: R-HSA-1989781	"Transcriptional activation of mitochondrial biogenesis";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"Activation of gene expression by SREBF (SREBP)";"RORA activates gene expression";"Circadian Clock";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"PPARA activates gene expression"
JAMg_model_12039.1	7	Reactome: R-HSA-5693554;Reactome: R-HSA-426117;Reactome: R-HSA-5693568;Reactome: R-HSA-912446;Reactome: R-HSA-5693616;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942	"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Cation-coupled Chloride cotransporters";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Meiotic recombination";"Presynaptic phase of homologous DNA pairing and strand exchange";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)"
JAMg_model_18195.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19133.7	13	KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5538;MetaCyc: PWY-6728;MetaCyc: PWY-7384;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-5913;MetaCyc: PWY-6969;Reactome: R-HSA-71403;KEGG: 00720+6.2.1.5;MetaCyc: PWY-5537	"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate VI";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Reductive TCA cycle II";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Pyruvate fermentation to acetate V"
JAMg_model_2683.1	2	KEGG: 00970+6.3.5.7;Reactome: R-HSA-2142753	"Aminoacyl-tRNA biosynthesis";"Arachidonic acid metabolism"
JAMg_model_8701.2	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_5074.1	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_17322.1	1	Reactome: R-HSA-140342	"Apoptosis induced DNA fragmentation"
JAMg_model_9851.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_11907.3	1	Reactome: R-HSA-2151201	"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_5284.3	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_20738.7	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_2059.3	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_11867.1	5	Reactome: R-HSA-69473;Reactome: R-HSA-5693607;Reactome: R-HSA-3232118;Reactome: R-HSA-5693571;Reactome: R-HSA-5693565	"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends";"SUMOylation of transcription factors";"Nonhomologous End-Joining (NHEJ)";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_12772.5	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_12928.2	14	KEGG: 00020+1.3.5.1;MetaCyc: PWY-3781;MetaCyc: PWY-4302;MetaCyc: PWY-5690;MetaCyc: PWY-561;KEGG: 00720+1.3.5.1;MetaCyc: PWY-6728;MetaCyc: PWY-6969;KEGG: 00650+1.3.5.1;MetaCyc: PWY-7254;KEGG: 00190+1.3.5.1;MetaCyc: PWY-7279;Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citrate cycle (TCA cycle)";"Aerobic respiration I (cytochrome c)";"Aerobic respiration III (alternative oxidase pathway)";"TCA cycle II (plants and fungi)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Butanoate metabolism";"TCA cycle VII (acetate-producers)";"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_10017.4	1	Reactome: R-HSA-8874211	"CREB3 factors activate genes"
JAMg_model_17404.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10024.3	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_12329.4	14	KEGG: 00190+1.3.5.1;MetaCyc: PWY-7279;Reactome: R-HSA-611105;Reactome: R-HSA-71403;MetaCyc: PWY-6969;KEGG: 00650+1.3.5.1;MetaCyc: PWY-7254;MetaCyc: PWY-561;KEGG: 00720+1.3.5.1;MetaCyc: PWY-6728;MetaCyc: PWY-3781;KEGG: 00020+1.3.5.1;MetaCyc: PWY-4302;MetaCyc: PWY-5690	"Oxidative phosphorylation";"Aerobic respiration II (cytochrome c) (yeast)";"Respiratory electron transport";"Citric acid cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Butanoate metabolism";"TCA cycle VII (acetate-producers)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Aerobic respiration I (cytochrome c)";"Citrate cycle (TCA cycle)";"Aerobic respiration III (alternative oxidase pathway)";"TCA cycle II (plants and fungi)"
JAMg_model_10410.1	9	Reactome: R-HSA-6804756;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693568;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554	"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Resolution of D-loop Structures through Holliday Junction Intermediates";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_9298.1	6	KEGG: 04070+3.1.3.66;Reactome: R-HSA-1660499;MetaCyc: PWY-6368;KEGG: 00562+3.1.3.66;Reactome: R-HSA-1855183;Reactome: R-HSA-1660516	"Phosphatidylinositol signaling system";"Synthesis of PIPs at the plasma membrane";"3-phosphoinositide degradation";"Inositol phosphate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol";"Synthesis of PIPs at the early endosome membrane"
JAMg_model_17219.1	5	Reactome: R-HSA-8856828;Reactome: R-HSA-6811440;Reactome: R-HSA-6798695;Reactome: R-HSA-432722;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Retrograde transport at the Trans-Golgi-Network";"Neutrophil degranulation";"Golgi Associated Vesicle Biogenesis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_7430.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_11623.1	1	Reactome: R-HSA-156584	"Cytosolic sulfonation of small molecules"
JAMg_model_5232.4	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_3669.2	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_4834.2	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_12660.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_7899.1	1	Reactome: R-HSA-425366	"Transport of bile salts and organic acids, metal ions and amine compounds"
JAMg_model_5862.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_1324.2	7	Reactome: R-HSA-2029485;MetaCyc: PWY-7039;KEGG: 00565+3.1.4.4;MetaCyc: PWY-3561;KEGG: 00564+3.1.4.4;Reactome: R-HSA-1483148;Reactome: R-HSA-1483166	"Role of phospholipids in phagocytosis";"Phosphatidate metabolism, as a signaling molecule";"Ether lipid metabolism";"Choline biosynthesis III";"Glycerophospholipid metabolism";"Synthesis of PG";"Synthesis of PA"
JAMg_model_8659.1	3	Reactome: R-HSA-2129379;Reactome: R-HSA-1566948;Reactome: R-HSA-1474228	"Molecules associated with elastic fibres";"Elastic fibre formation";"Degradation of the extracellular matrix"
JAMg_model_14505.1	2	Reactome: R-HSA-2022854;Reactome: R-HSA-975577	"Keratan sulfate biosynthesis";"N-Glycan antennae elongation"
JAMg_model_16408.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_5326.1	2	Reactome: R-HSA-6811436;Reactome: R-HSA-8876198	"COPI-independent Golgi-to-ER retrograde traffic";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_8162.2	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_2446.1	5	Reactome: R-HSA-3214815;Reactome: R-HSA-427389;Reactome: R-HSA-6804758;Reactome: R-HSA-8943724;Reactome: R-HSA-73762	"HDACs deacetylate histones";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"Regulation of TP53 Activity through Acetylation";"Regulation of PTEN gene transcription";"RNA Polymerase I Transcription Initiation"
JAMg_model_479.4	11	Reactome: R-HSA-163615;Reactome: R-HSA-5610787;Reactome: R-HSA-170670;Reactome: R-HSA-432040;Reactome: R-HSA-418597;Reactome: R-HSA-163359;Reactome: R-HSA-418594;Reactome: R-HSA-418555;Reactome: R-HSA-164378;Reactome: R-HSA-170660;KEGG: 00230+4.6.1.1	"PKA activation";"Hedgehog 'off' state";"Adenylate cyclase inhibitory pathway";"Vasopressin regulates renal water homeostasis via Aquaporins";"G alpha (z) signalling events";"Glucagon signaling in metabolic regulation";"G alpha (i) signalling events";"G alpha (s) signalling events";"PKA activation in glucagon signalling";"Adenylate cyclase activating pathway";"Purine metabolism"
JAMg_model_9200.2	3	Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway"
JAMg_model_6323.1	4	MetaCyc: PWY-8072;MetaCyc: PWY-8040;MetaCyc: PWY-7383;KEGG: 00473+5.1.1.1	"Alanine racemization";"Ansatrienin biosynthesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"D-Alanine metabolism"
JAMg_model_16490.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_10492.2	1	Reactome: R-HSA-110357	"Displacement of DNA glycosylase by APEX1"
JAMg_model_16858.2	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_3237.2	13	Reactome: R-HSA-8856825;Reactome: R-HSA-437239;Reactome: R-HSA-8856828;Reactome: R-HSA-8866427;Reactome: R-HSA-416993;Reactome: R-HSA-2132295;Reactome: R-HSA-167590;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-177504;Reactome: R-HSA-8964038;Reactome: R-HSA-3928665;Reactome: R-HSA-182218	"Cargo recognition for clathrin-mediated endocytosis";"Recycling pathway of L1";"Clathrin-mediated endocytosis";"VLDLR internalisation and degradation";"Trafficking of GluR2-containing AMPA receptors";"MHC class II antigen presentation";"Nef Mediated CD4 Down-regulation";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Retrograde neurotrophin signalling";"LDL clearance";"EPH-ephrin mediated repulsion of cells";"Nef Mediated CD8 Down-regulation"
JAMg_model_6016.1	2	MetaCyc: PWY-6829;Reactome: R-HSA-6782315	"Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol"
JAMg_model_12163.1	3	Reactome: R-HSA-1483213;KEGG: 00564+4.1.1.65;MetaCyc: PWY-5669	"Synthesis of PE";"Glycerophospholipid metabolism";"Phosphatidylserine and phosphatidylethanolamine biosynthesis I"
JAMg_model_19013.3	7	Reactome: R-HSA-2122948;Reactome: R-HSA-2894862;Reactome: R-HSA-9013507;MetaCyc: PWY-7511;Reactome: R-HSA-2979096;Reactome: R-HSA-2644606;Reactome: R-HSA-2691232	"Activated NOTCH1 Transmits Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Protein ubiquitination";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD Domain Mutants"
JAMg_model_15492.3	2	Reactome: R-HSA-5625740;KEGG: 04070+2.7.11.13	"RHO GTPases activate PKNs";"Phosphatidylinositol signaling system"
JAMg_model_1536.2	9	Reactome: R-HSA-166208;Reactome: R-HSA-6798695;Reactome: R-HSA-380972;Reactome: R-HSA-165159;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-9639288;Reactome: R-HSA-5674135;Reactome: R-HSA-5628897	"mTORC1-mediated signalling";"Neutrophil degranulation";"Energy dependent regulation of mTOR by LKB1-AMPK";"mTOR signalling";"Macroautophagy";"Regulation of PTEN gene transcription";"Amino acids regulate mTORC1";"MAP2K and MAPK activation";"TP53 Regulates Metabolic Genes"
JAMg_model_7597.4	8	Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-68616;Reactome: R-HSA-68827;Reactome: R-HSA-113507;Reactome: R-HSA-68867;Reactome: R-HSA-176187;Reactome: R-HSA-68689	"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Assembly of the ORC complex at the origin of replication";"CDT1 association with the CDC6:ORC:origin complex";"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress";"CDC6 association with the ORC:origin complex"
JAMg_model_985.3	3	Reactome: R-HSA-3299685;Reactome: R-HSA-5628897;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"TP53 Regulates Metabolic Genes";"Glutathione metabolism"
JAMg_model_17206.1	5	Reactome: R-HSA-5693571;Reactome: R-HSA-1834949;Reactome: R-HSA-6798695;Reactome: R-HSA-164843;Reactome: R-HSA-3270619	"Nonhomologous End-Joining (NHEJ)";"Cytosolic sensors of pathogen-associated DNA";"Neutrophil degranulation";"2-LTR circle formation";"IRF3-mediated induction of type I IFN"
JAMg_model_7496.1	4	Reactome: R-HSA-2586552;Reactome: R-HSA-983231;Reactome: R-HSA-982772;Reactome: R-HSA-1170546	"Signaling by Leptin";"Factors involved in megakaryocyte development and platelet production";"Growth hormone receptor signaling";"Prolactin receptor signaling"
JAMg_model_20738.4	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_11685.1	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_15675.1	12	MetaCyc: PWY-6527;Reactome: R-HSA-173599;MetaCyc: PWY-3801;MetaCyc: PWY-7343;KEGG: 00500+2.7.7.9;KEGG: 00052+2.7.7.9;KEGG: 00520+2.7.7.9;KEGG: 00561+2.7.7.9;Reactome: R-HSA-3322077;KEGG: 00040+2.7.7.9;MetaCyc: PWY-7817;MetaCyc: PWY-7238	"Stachyose degradation";"Formation of the active cofactor, UDP-glucuronate";"Sucrose degradation II (sucrose synthase)";"UDP-alpha-D-glucose biosynthesis I";"Starch and sucrose metabolism";"Galactose metabolism";"Amino sugar and nucleotide sugar metabolism";"Glycerolipid metabolism";"Glycogen synthesis";"Pentose and glucuronate interconversions";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Sucrose biosynthesis II"
JAMg_model_12958.1	3	Reactome: R-HSA-9609690;Reactome: R-HSA-3899300;Reactome: R-HSA-6804757	"HCMV Early Events";"SUMOylation of transcription cofactors";"Regulation of TP53 Degradation"
JAMg_model_2864.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5681.1	1	Reactome: R-HSA-3295583	"TRP channels"
JAMg_model_19882.1	11	Reactome: R-HSA-5685938;Reactome: R-HSA-5693554;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-174437;Reactome: R-HSA-5693568;Reactome: R-HSA-69166;Reactome: R-HSA-6804756;Reactome: R-HSA-5693607;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942	"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Removal of the Flap Intermediate from the C-strand";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Removal of the Flap Intermediate";"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)"
JAMg_model_12664.3	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_16520.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_10797.9	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_9900.4	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_10328.9	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_20438.2	4	Reactome: R-HSA-2500257;Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2467813	"Resolution of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Separation of Sister Chromatids"
JAMg_model_14120.5	11	Reactome: R-HSA-450302;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-4420097;KEGG: 05170+2.7.11.1;Reactome: R-HSA-2559580;KEGG: 05163+2.7.11.1;Reactome: R-HSA-171007	"activated TAK1 mediates p38 MAPK activation";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"VEGFA-VEGFR2 Pathway";"Human immunodeficiency virus 1 infection";"Oxidative Stress Induced Senescence";"Human cytomegalovirus infection";"p38MAPK events"
JAMg_model_11502.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_8701.1	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_2133.1	2	Reactome: R-HSA-456926;Reactome: R-HSA-416482	"Thrombin signalling through proteinase activated receptors (PARs)";"G alpha (12/13) signalling events"
JAMg_model_4447.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_17911.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_15536.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_3538.1	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_2924.1	18	MetaCyc: PWY-7783;KEGG: 00591+3.1.1.4;MetaCyc: PWY-8053;MetaCyc: PWY-6803;Reactome: R-HSA-1482801;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7409;KEGG: 00565+3.1.1.4;Reactome: R-HSA-1482839;Reactome: R-HSA-1483166;Reactome: R-HSA-1482788;MetaCyc: PWY-8051;KEGG: 00564+3.1.1.4;KEGG: 00592+3.1.1.4;Reactome: R-HSA-1482925;MetaCyc: PWY-7416;Reactome: R-HSA-1482922;MetaCyc: PWY-7417	"Plasmalogen degradation";"Linoleic acid metabolism";"Anandamide biosynthesis II";"Phosphatidylcholine acyl editing";"Acyl chain remodelling of PS";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Ether lipid metabolism";"Acyl chain remodelling of PE";"Synthesis of PA";"Acyl chain remodelling of PC";"Anandamide biosynthesis I";"Glycerophospholipid metabolism";"alpha-Linolenic acid metabolism";"Acyl chain remodelling of PG";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Acyl chain remodelling of PI";"Phospholipid remodeling (phosphatidate, yeast)"
JAMg_model_17671.4	3	Reactome: R-HSA-193648;Reactome: R-HSA-194840;Reactome: R-HSA-416482	"NRAGE signals death through JNK";"Rho GTPase cycle";"G alpha (12/13) signalling events"
JAMg_model_6552.1	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_20252.2	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_18780.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_1147.5	2	Reactome: R-HSA-5218920;Reactome: R-HSA-418990	"VEGFR2 mediated vascular permeability";"Adherens junctions interactions"
JAMg_model_3810.1	3	Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438	"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic"
JAMg_model_10409.3	3	Reactome: R-HSA-8876198;Reactome: R-HSA-6811438;Reactome: R-HSA-6811440	"RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_12808.1	2	KEGG: 00563+3.5.1.89;Reactome: R-HSA-162710	"Glycosylphosphatidylinositol (GPI)-anchor biosynthesis";"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_11402.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_10808.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_5067.5	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_7190.5	12	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-193648;Reactome: R-HSA-416476;Reactome: R-HSA-194840;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Relaxin signaling pathway";"NRAGE signals death through JNK";"G alpha (q) signalling events";"Rho GTPase cycle";"Thermogenesis";"Human papillomavirus infection";"Human cytomegalovirus infection";"DCC mediated attractive signaling";"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events"
JAMg_model_1852.2	2	Reactome: R-HSA-168276;Reactome: R-HSA-1169408	"NS1 Mediated Effects on Host Pathways";"ISG15 antiviral mechanism"
JAMg_model_16067.1	2	Reactome: R-HSA-162588;Reactome: R-HSA-917729	"Budding and maturation of HIV virion";"Endosomal Sorting Complex Required For Transport (ESCRT)"
JAMg_model_19131.7	14	MetaCyc: PWY-8052;MetaCyc: PWY-6453;MetaCyc: PWY-8055;KEGG: 00564+3.1.3.4;Reactome: R-HSA-1483213;KEGG: 00561+3.1.3.4;KEGG: 00565+3.1.3.4;MetaCyc: PWY-8051;Reactome: R-HSA-4419969;Reactome: R-HSA-75109;Reactome: R-HSA-1483191;MetaCyc: PWY-7782;MetaCyc: PWY-8053;KEGG: 00600+3.1.3.4	"2-arachidonoylglycerol biosynthesis";"Stigma estolide biosynthesis";"Palmitoyl ethanolamide biosynthesis";"Glycerophospholipid metabolism";"Synthesis of PE";"Glycerolipid metabolism";"Ether lipid metabolism";"Anandamide biosynthesis I";"Depolymerisation of the Nuclear Lamina";"Triglyceride biosynthesis";"Synthesis of PC";"Plasmalogen biosynthesis";"Anandamide biosynthesis II";"Sphingolipid metabolism"
JAMg_model_10062.2	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_7643.2	16	Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_7586.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_8472.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_5870.4	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_1006.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_17580.3	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_4909.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_1102.1	2	KEGG: 00900+2.5.1.58;Reactome: R-HSA-2514859	"Terpenoid backbone biosynthesis";"Inactivation, recovery and regulation of the phototransduction cascade"
JAMg_model_16527.1	11	KEGG: 00910+6.3.1.2;KEGG: 00250+6.3.1.2;MetaCyc: PWY-6549;MetaCyc: PWY-6964;Reactome: R-HSA-210455;KEGG: 00220+6.3.1.2;Reactome: R-HSA-8964539;KEGG: 00630+6.3.1.2;MetaCyc: PWY-5675;MetaCyc: PWY-381;MetaCyc: PWY-6963	"Nitrogen metabolism";"Alanine, aspartate and glutamate metabolism";"L-glutamine biosynthesis III";"Ammonia assimilation cycle II";"Astrocytic Glutamate-Glutamine Uptake And Metabolism";"Arginine biosynthesis";"Glutamate and glutamine metabolism";"Glyoxylate and dicarboxylate metabolism";"Nitrate reduction V (assimilatory)";"Nitrate reduction II (assimilatory)";"Ammonia assimilation cycle I"
JAMg_model_1970.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_20866.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_12129.4	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_22.1	1	Reactome: R-HSA-2564830	"Cytosolic iron-sulfur cluster assembly"
JAMg_model_11645.3	5	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_14299.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_20389.1	1	Reactome: R-HSA-1660499	"Synthesis of PIPs at the plasma membrane"
JAMg_model_17419.1	12	Reactome: R-HSA-8854518;Reactome: R-HSA-6807878;Reactome: R-HSA-5620912;Reactome: R-HSA-6811436;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-2132295;Reactome: R-HSA-2565942;Reactome: R-HSA-3371497;Reactome: R-HSA-380284;Reactome: R-HSA-381038;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"COPI-mediated anterograde transport";"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"MHC class II antigen presentation";"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Loss of proteins required for interphase microtubule organization from the centrosome";"XBP1(S) activates chaperone genes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_19082.1	2	Reactome: R-HSA-456926;Reactome: R-HSA-416482	"Thrombin signalling through proteinase activated receptors (PARs)";"G alpha (12/13) signalling events"
JAMg_model_4471.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_6994.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_7655.4	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_11740.2	9	Reactome: R-HSA-174430;Reactome: R-HSA-174411;Reactome: R-HSA-6784531;Reactome: R-HSA-68952;Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-68962;Reactome: R-HSA-69183;Reactome: R-HSA-113501	"Telomere C-strand synthesis initiation";"Polymerase switching on the C-strand of the telomere";"tRNA processing in the nucleus";"DNA replication initiation";"Removal of the Flap Intermediate";"Polymerase switching";"Activation of the pre-replicative complex";"Processive synthesis on the lagging strand";"Inhibition of replication initiation of damaged DNA by RB1/E2F1"
JAMg_model_12320.1	18	MetaCyc: PWY-7184;MetaCyc: PWY-7197;KEGG: 00983+2.7.4.6;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7226;MetaCyc: PWY-7220;MetaCyc: PWY-7198;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7210;MetaCyc: PWY-7224;MetaCyc: PWY-7222;MetaCyc: PWY-7176;MetaCyc: PWY-7227;MetaCyc: PWY-7187;MetaCyc: PWY-7221;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7205	"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Drug metabolism - other enzymes";"Purine metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Purine deoxyribonucleosides salvage";"Guanosine deoxyribonucleotides de novo biosynthesis II";"UTP and CTP de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"CMP phosphorylation"
JAMg_model_4336.1	34	Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-68877;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-4570464;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-3232142;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9639288;Reactome: R-HSA-159236;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-5663220;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-170822;Reactome: R-HSA-168333;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-1169408;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813;Reactome: R-HSA-4551638;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-159227;Reactome: R-HSA-168276	"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"Mitotic Prometaphase";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"SUMOylation of RNA binding proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"SUMOylation of ubiquitinylation proteins";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"Amino acids regulate mTORC1";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"RHO GTPases Activate Formins";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NEP/NS2 Interacts with the Cellular Export Machinery";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"ISG15 antiviral mechanism";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids";"SUMOylation of chromatin organization proteins";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of the SLBP independent Mature mRNA";"NS1 Mediated Effects on Host Pathways"
JAMg_model_17420.1	2	KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_16400.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_3944.1	2	Reactome: R-HSA-1299308;Reactome: R-HSA-5576886	"Tandem of pore domain in a weak inwardly rectifying K+ channels (TWIK)";"Phase 4 - resting membrane potential"
JAMg_model_1681.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_9656.1	33	Reactome: R-HSA-4551638;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-159227;Reactome: R-HSA-168276;Reactome: R-HSA-168333;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-1169408;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813;Reactome: R-HSA-159236;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-5663220;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-170822;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-68877;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-4570464;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-3232142;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-168325;Reactome: R-HSA-180746	"SUMOylation of chromatin organization proteins";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of the SLBP independent Mature mRNA";"NS1 Mediated Effects on Host Pathways";"NEP/NS2 Interacts with the Cellular Export Machinery";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"ISG15 antiviral mechanism";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"RHO GTPases Activate Formins";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Mitotic Prometaphase";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"SUMOylation of RNA binding proteins";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Transcriptional regulation by small RNAs";"SUMOylation of ubiquitinylation proteins";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein"
JAMg_model_16666.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_20813.3	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_7144.3	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_5598.1	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_11039.1	1	Reactome: R-HSA-114608	"Platelet degranulation"
JAMg_model_19704.2	2	MetaCyc: PWY-6558;Reactome: R-HSA-2022928	"Heparan sulfate biosynthesis (late stages)";"HS-GAG biosynthesis"
JAMg_model_8686.1	2	MetaCyc: PWY-7802;MetaCyc: PWY-7799	"N-end rule pathway II (prokaryotic)";"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_14040.1	2	Reactome: R-HSA-8964038;Reactome: R-HSA-6798695	"LDL clearance";"Neutrophil degranulation"
JAMg_model_6073.2	2	Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_997.7	2	MetaCyc: PWY-6829;Reactome: R-HSA-6782315	"Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol"
JAMg_model_6697.1	1	Reactome: R-HSA-1221632	"Meiotic synapsis"
JAMg_model_9277.1	3	Reactome: R-HSA-9033241;Reactome: R-HSA-9603798;Reactome: R-HSA-8866654	"Peroxisomal protein import";"Class I peroxisomal membrane protein import";"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_15126.2	13	Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557	"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis"
JAMg_model_2460.1	1	Reactome: R-HSA-2514853	"Condensation of Prometaphase Chromosomes"
JAMg_model_4993.1	2	Reactome: R-HSA-204005;Reactome: R-HSA-8876198	"COPII-mediated vesicle transport";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_12664.4	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_15837.1	1	Reactome: R-HSA-5693565	"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_949.1	5	Reactome: R-HSA-3108214;Reactome: R-HSA-5221030;Reactome: R-HSA-110328;Reactome: R-HSA-110357;Reactome: R-HSA-110329	"SUMOylation of DNA damage response and repair proteins";"TET1,2,3 and TDG demethylate DNA";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Displacement of DNA glycosylase by APEX1";"Cleavage of the damaged pyrimidine"
JAMg_model_8547.2	5	Reactome: R-HSA-430039;Reactome: R-HSA-450604;Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-380994	"mRNA decay by 5' to 3' exoribonuclease";"KSRP (KHSRP) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress"
JAMg_model_11853.1	4	Reactome: R-HSA-9615710;Reactome: R-HSA-9613829;Reactome: R-HSA-3899300;Reactome: R-HSA-9646399	"Late endosomal microautophagy";"Chaperone Mediated Autophagy";"SUMOylation of transcription cofactors";"Aggrephagy"
JAMg_model_18705.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_4164.1	1	Reactome: R-HSA-429958	"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_4872.1	11	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-163680;Reactome: R-HSA-380972;KEGG: 04926+2.7.11.1;Reactome: R-HSA-9614657;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-6804756;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"AMPK inhibits chREBP transcriptional activation activity";"Energy dependent regulation of mTOR by LKB1-AMPK";"Relaxin signaling pathway";"FOXO-mediated transcription of cell death genes";"Thermogenesis";"Human papillomavirus infection";"Regulation of TP53 Activity through Phosphorylation";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection"
JAMg_model_8153.2	3	KEGG: 00260+3.1.3.3;KEGG: 00680+3.1.3.3;Reactome: R-HSA-977347	"Glycine, serine and threonine metabolism";"Methane metabolism";"Serine biosynthesis"
JAMg_model_10497.2	9	Reactome: R-HSA-446353;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-446343;KEGG: 04926+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1	"Cell-extracellular matrix interactions";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Human papillomavirus infection";"Thermogenesis";"Localization of the PINCH-ILK-PARVIN complex to focal adhesions";"Relaxin signaling pathway";"PI3K-Akt signaling pathway";"mTOR signaling pathway"
JAMg_model_16985.1	8	Reactome: R-HSA-5083629;Reactome: R-HSA-5173105;Reactome: R-HSA-5083633;MetaCyc: PWY-7921;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7979;KEGG: 00514+2.4.1.109;MetaCyc: PWY-7922	"Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2";"O-linked glycosylation";"Defective POMT1 causes MDDGA1, MDDGB1 and MDDGC1";"Protein O-mannosylation I (yeast)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation III (mammals, core M3)";"Other types of O-glycan biosynthesis";"Protein O-mannosylation II (mammals, core M1 and core M2)"
JAMg_model_20059.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_4485.3	4	MetaCyc: PWY-7437;Reactome: R-HSA-3214847;KEGG: 00514+2.4.1.255;Reactome: R-HSA-5689603	"Protein O-[N-acetyl]-glucosylation";"HATs acetylate histones";"Other types of O-glycan biosynthesis";"UCH proteinases"
JAMg_model_14791.1	3	Reactome: R-HSA-430039;Reactome: R-HSA-450385;Reactome: R-HSA-450513	"mRNA decay by 5' to 3' exoribonuclease";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA"
JAMg_model_16071.1	9	Reactome: R-HSA-114608;Reactome: R-HSA-6798695;Reactome: R-HSA-6802955;Reactome: R-HSA-6802946;Reactome: R-HSA-6802952;Reactome: R-HSA-6802948;Reactome: R-HSA-445355;Reactome: R-HSA-5674135;Reactome: R-HSA-9649948	"Platelet degranulation";"Neutrophil degranulation";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Signaling by moderate kinase activity BRAF mutants";"Signaling by BRAF and RAF fusions";"Signaling by high-kinase activity BRAF mutants";"Smooth Muscle Contraction";"MAP2K and MAPK activation";"Signaling downstream of RAS mutants"
JAMg_model_2104.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_8458.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_18869.1	3	Reactome: R-HSA-5368286;KEGG: 00970+2.1.2.9;KEGG: 00670+2.1.2.9	"Mitochondrial translation initiation";"Aminoacyl-tRNA biosynthesis";"One carbon pool by folate"
JAMg_model_16422.4	6	Reactome: R-HSA-114516;Reactome: R-HSA-5099900;Reactome: R-HSA-76005;KEGG: 04070+2.7.11.13;Reactome: R-HSA-418597;Reactome: R-HSA-416993	"Disinhibition of SNARE formation";"WNT5A-dependent internalization of FZD4";"Response to elevated platelet cytosolic Ca2+";"Phosphatidylinositol signaling system";"G alpha (z) signalling events";"Trafficking of GluR2-containing AMPA receptors"
JAMg_model_8031.1	3	KEGG: 00790+2.10.1.1;Reactome: R-HSA-947581;MetaCyc: PWY-6823	"Folate biosynthesis";"Molybdenum cofactor biosynthesis";"Molybdenum cofactor biosynthesis"
JAMg_model_13521.5	8	Reactome: R-HSA-442720;Reactome: R-HSA-983231;Reactome: R-HSA-164378;Reactome: R-HSA-381676;Reactome: R-HSA-432040;Reactome: R-HSA-163615;Reactome: R-HSA-5610787;Reactome: R-HSA-180024	"CREB1 phosphorylation through the activation of Adenylate Cyclase";"Factors involved in megakaryocyte development and platelet production";"PKA activation in glucagon signalling";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Vasopressin regulates renal water homeostasis via Aquaporins";"PKA activation";"Hedgehog 'off' state";"DARPP-32 events"
JAMg_model_17340.1	3	KEGG: 00030+1.1.1.44;KEGG: 00480+1.1.1.44;Reactome: R-HSA-71336	"Pentose phosphate pathway";"Glutathione metabolism";"Pentose phosphate pathway"
JAMg_model_17354.3	21	Reactome: R-HSA-937039;Reactome: R-HSA-5684264;Reactome: R-HSA-5602636;Reactome: R-HSA-445989;Reactome: R-HSA-933542;Reactome: R-HSA-5607764;Reactome: R-HSA-168638;Reactome: R-HSA-5603027;Reactome: R-HSA-1810476;Reactome: R-HSA-933543;Reactome: R-HSA-202424;Reactome: R-HSA-9020702;Reactome: R-HSA-1236974;Reactome: R-HSA-975144;Reactome: R-HSA-5603029;Reactome: R-HSA-937041;Reactome: R-HSA-2871837;Reactome: R-HSA-5357956;Reactome: R-HSA-1169091;Reactome: R-HSA-5357905;Reactome: R-HSA-168927	"IRAK1 recruits IKK complex";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"IKBKB deficiency causes SCID";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"TRAF6 mediated NF-kB activation";"CLEC7A (Dectin-1) signaling";"NOD1/2 Signaling Pathway";"IKBKG deficiency causes anhidrotic ectodermal dysplasia with immunodeficiency (EDA-ID) (via TLR)";"RIP-mediated NFkB activation via ZBP1";"NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10";"Downstream TCR signaling";"Interleukin-1 signaling";"ER-Phagosome pathway";"IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation";"IkBA variant leads to EDA-ID";"IKK complex recruitment mediated by RIP1";"FCERI mediated NF-kB activation";"TNFR1-induced NFkappaB signaling pathway";"Activation of NF-kappaB in B cells";"Regulation of TNFR1 signaling";"TICAM1, RIP1-mediated IKK complex recruitment"
JAMg_model_9722.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_13553.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_10388.1	2	KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_13295.3	5	KEGG: 05235+3.1.3.16;Reactome: R-HSA-176407;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16;Reactome: R-HSA-5687128	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation";"MAPK6/MAPK4 signaling"
JAMg_model_2074.3	2	Reactome: R-HSA-5357905;Reactome: R-HSA-8876198	"Regulation of TNFR1 signaling";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_19261.1	2	Reactome: R-HSA-6798695;MetaCyc: PWY-7511	"Neutrophil degranulation";"Protein ubiquitination"
JAMg_model_14134.3	1	KEGG: 00480+3.4.11.1	"Glutathione metabolism"
JAMg_model_7986.1	1	Reactome: R-HSA-1483166	"Synthesis of PA"
JAMg_model_463.1	2	Reactome: R-HSA-390471;Reactome: R-HSA-1660662	"Association of TriC/CCT with target proteins during biosynthesis";"Glycosphingolipid metabolism"
JAMg_model_20950.3	2	Reactome: R-HSA-6803204;Reactome: R-HSA-1268020	"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"Mitochondrial protein import"
JAMg_model_1904.1	2	Reactome: R-HSA-5620924;Reactome: R-HSA-5610787	"Intraflagellar transport";"Hedgehog 'off' state"
JAMg_model_17485.2	4	KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219;Reactome: R-HSA-499943;KEGG: 00230+2.7.4.3	"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Interconversion of nucleotide di- and triphosphates";"Purine metabolism"
JAMg_model_20391.1	4	MetaCyc: PWY-7221;KEGG: 00230+6.3.5.2;KEGG: 00983+6.3.5.2;Reactome: R-HSA-73817	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Drug metabolism - other enzymes";"Purine ribonucleoside monophosphate biosynthesis"
JAMg_model_16195.1	56	Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4641258;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176	"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Degradation of DVL";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha"
JAMg_model_11321.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_716.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4397.1	7	Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-5628897;Reactome: R-HSA-165159;Reactome: R-HSA-380972;Reactome: R-HSA-166208;Reactome: R-HSA-9639288	"Macroautophagy";"Regulation of PTEN gene transcription";"TP53 Regulates Metabolic Genes";"mTOR signalling";"Energy dependent regulation of mTOR by LKB1-AMPK";"mTORC1-mediated signalling";"Amino acids regulate mTORC1"
JAMg_model_2173.2	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_3655.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_8910.11	2	Reactome: R-HSA-379716;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism"
JAMg_model_10962.1	2	Reactome: R-HSA-6804756;Reactome: R-HSA-8854518	"Regulation of TP53 Activity through Phosphorylation";"AURKA Activation by TPX2"
JAMg_model_4248.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_10294.1	52	Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-76061;Reactome: R-HSA-5250924;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-5601884;Reactome: R-HSA-76042;Reactome: R-HSA-6803529;Reactome: R-HSA-1834949;Reactome: R-HSA-73980;Reactome: R-HSA-73772;Reactome: R-HSA-73776;Reactome: R-HSA-6782135;Reactome: R-HSA-167242;Reactome: R-HSA-76071;Reactome: R-HSA-75953;Reactome: R-HSA-6796648;Reactome: R-HSA-76066;Reactome: R-HSA-167200;Reactome: R-HSA-73762;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-5617472;Reactome: R-HSA-77075;Reactome: R-HSA-72086;Reactome: R-HSA-6781823;Reactome: R-HSA-167238;Reactome: R-HSA-73863;Reactome: R-HSA-5578749;Reactome: R-HSA-72163;Reactome: R-HSA-749476;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-6781827;Reactome: R-HSA-168325;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-203927;Reactome: R-HSA-73780	"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"PIWI-interacting RNA (piRNA) biogenesis";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Termination";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Promoter Escape";"Dual incision in TC-NER";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase II Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase I Transcription Initiation";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Capping";"Formation of TC-NER Pre-Incision Complex";"Pausing and recovery of Tat-mediated HIV elongation";"RNA Polymerase I Transcription Termination";"Transcriptional regulation by small RNAs";"mRNA Splicing - Major Pathway";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Viral Messenger RNA Synthesis";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"MicroRNA (miRNA) biogenesis";"RNA Polymerase III Chain Elongation"
JAMg_model_20177.1	8	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-418889;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Relaxin signaling pathway";"Caspase activation via Dependence Receptors in the absence of ligand";"Human papillomavirus infection";"Thermogenesis";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection"
JAMg_model_11562.5	2	Reactome: R-HSA-203927;Reactome: R-HSA-426486	"MicroRNA (miRNA) biogenesis";"Small interfering RNA (siRNA) biogenesis"
JAMg_model_9932.7	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_19016.2	4	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16;Reactome: R-HSA-6807505	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation";"RNA polymerase II transcribes snRNA genes"
JAMg_model_16202.1	2	Reactome: R-HSA-392154;Reactome: R-HSA-1222556	"Nitric oxide stimulates guanylate cyclase";"ROS and RNS production in phagocytes"
JAMg_model_8065.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_7887.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_2898.1	2	Reactome: R-HSA-5661270;KEGG: 00040+2.7.1.17	"Formation of xylulose-5-phosphate";"Pentose and glucuronate interconversions"
JAMg_model_5870.3	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_16302.2	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_13124.1	9	Reactome: R-HSA-6804114;Reactome: R-HSA-69656;Reactome: R-HSA-69231;Reactome: R-HSA-1362300;Reactome: R-HSA-2173796;Reactome: R-HSA-69202;Reactome: R-HSA-1538133;Reactome: R-HSA-1362277;Reactome: R-HSA-69205	"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Cyclin A:Cdk2-associated events at S phase entry";"Cyclin D associated events in G1";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Cyclin E associated events during G1/S transition";"G0 and Early G1";"Transcription of E2F targets under negative control by DREAM complex";"G1/S-Specific Transcription"
JAMg_model_20471.1	1	MetaCyc: PWY-6308	"L-cysteine biosynthesis II (tRNA-dependent)"
JAMg_model_777.1	1	MetaCyc: PWY-7942	"5-oxo-L-proline metabolism"
JAMg_model_8107.2	1	Reactome: R-HSA-8851805	"MET activates RAS signaling"
JAMg_model_8515.3	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_11403.1	6	Reactome: R-HSA-176187;Reactome: R-HSA-69052;Reactome: R-HSA-68949;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68867	"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state";"Orc1 removal from chromatin";"Unwinding of DNA";"Activation of the pre-replicative complex";"Assembly of the pre-replicative complex"
JAMg_model_10821.1	5	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635;KEGG: 00232+1.7.3.3;MetaCyc: PWY-5691;KEGG: 00230+1.7.3.3	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)";"Caffeine metabolism";"Urate conversion to allantoin I";"Purine metabolism"
JAMg_model_17166.1	5	KEGG: 00630+4.2.1.3;KEGG: 00720+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00290+4.2.1.33;KEGG: 00020+4.2.1.3	"Glyoxylate and dicarboxylate metabolism";"Carbon fixation pathways in prokaryotes";"Iron uptake and transport";"Valine, leucine and isoleucine biosynthesis";"Citrate cycle (TCA cycle)"
JAMg_model_2280.3	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_6075.1	24	Reactome: R-HSA-983189;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295	"Kinesins";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation"
JAMg_model_4116.2	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_9330.1	5	Reactome: R-HSA-2132295;Reactome: R-HSA-6811434;Reactome: R-HSA-5620924;Reactome: R-HSA-983189;Reactome: R-HSA-1445148	"MHC class II antigen presentation";"COPI-dependent Golgi-to-ER retrograde traffic";"Intraflagellar transport";"Kinesins";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_2076.1	33	Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-68877;Reactome: R-HSA-168276;Reactome: R-HSA-159227;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-4551638;Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-1169408;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333	"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"snRNP Assembly";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"Mitotic Prometaphase";"NS1 Mediated Effects on Host Pathways";"Transport of the SLBP independent Mature mRNA";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"SUMOylation of chromatin organization proteins";"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"ISG15 antiviral mechanism";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery"
JAMg_model_11801.1	13	MetaCyc: PWY-7410;MetaCyc: PWY-6383;MetaCyc: PWY-5123;MetaCyc: PWY-7141;MetaCyc: PWY-7736;MetaCyc: PWY-7659;MetaCyc: PWY-6859;MetaCyc: PWY-5122;MetaCyc: PWY-7102;MetaCyc: PWY-7709;MetaCyc: PWY-7182;KEGG: 00900+2.5.1.10+2.5.1.1;MetaCyc: PWY-7721	"Ipsdienol biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"(3S)-linalool biosynthesis";"Stellatic acid biosynthesis";"Viridicatumtoxin biosynthesis";"All-trans-farnesol biosynthesis";"Geranyl diphosphate biosynthesis";"Bisabolene biosynthesis (engineered)";"(3R)-linalool biosynthesis";"Linalool biosynthesis I";"Terpenoid backbone biosynthesis";"Methyl phomopsenoate biosynthesis"
JAMg_model_7407.2	1	Reactome: R-HSA-8963901	"Chylomicron remodeling"
JAMg_model_11784.2	2	Reactome: R-HSA-975957;Reactome: R-HSA-9010553	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs"
JAMg_model_14241.1	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_1687.3	16	Reactome: R-HSA-179409;Reactome: R-HSA-983168;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8853884;Reactome: R-HSA-2467813;Reactome: R-HSA-176408;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-174084;Reactome: R-HSA-174184;Reactome: R-HSA-176409;Reactome: R-HSA-2559582;Reactome: R-HSA-141430;Reactome: R-HSA-176412;Reactome: R-HSA-69017	"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Transcriptional Regulation by VENTX";"Separation of Sister Chromatids";"Regulation of APC/C activators between G1/S and early anaphase";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"Autodegradation of Cdh1 by Cdh1:APC/C";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Senescence-Associated Secretory Phenotype (SASP)";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Phosphorylation of the APC/C";"CDK-mediated phosphorylation and removal of Cdc6"
JAMg_model_18986.1	2	Reactome: R-HSA-2142753;KEGG: 00970+6.3.5.7	"Arachidonic acid metabolism";"Aminoacyl-tRNA biosynthesis"
JAMg_model_20205.2	2	KEGG: 00627+3.6.1.7;KEGG: 00620+3.6.1.7	"Aminobenzoate degradation";"Pyruvate metabolism"
JAMg_model_6042.2	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_3411.2	1	Reactome: R-HSA-977347	"Serine biosynthesis"
JAMg_model_8348.2	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_7011.1	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_4349.3	8	Reactome: R-HSA-165054;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813;Reactome: R-HSA-4615885;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-5663220	"Rev-mediated nuclear export of HIV RNA";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids";"SUMOylation of DNA replication proteins";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins"
JAMg_model_12039.2	7	Reactome: R-HSA-5693554;Reactome: R-HSA-426117;Reactome: R-HSA-5693568;Reactome: R-HSA-912446;Reactome: R-HSA-5693616;Reactome: R-HSA-5685942;Reactome: R-HSA-5693579	"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Cation-coupled Chloride cotransporters";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Meiotic recombination";"Presynaptic phase of homologous DNA pairing and strand exchange";"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange"
JAMg_model_479.1	11	Reactome: R-HSA-163615;Reactome: R-HSA-5610787;Reactome: R-HSA-170670;Reactome: R-HSA-432040;Reactome: R-HSA-418597;Reactome: R-HSA-163359;Reactome: R-HSA-418594;Reactome: R-HSA-164378;Reactome: R-HSA-418555;Reactome: R-HSA-170660;KEGG: 00230+4.6.1.1	"PKA activation";"Hedgehog 'off' state";"Adenylate cyclase inhibitory pathway";"Vasopressin regulates renal water homeostasis via Aquaporins";"G alpha (z) signalling events";"Glucagon signaling in metabolic regulation";"G alpha (i) signalling events";"PKA activation in glucagon signalling";"G alpha (s) signalling events";"Adenylate cyclase activating pathway";"Purine metabolism"
JAMg_model_20692.1	1	Reactome: R-HSA-1234174	"Cellular response to hypoxia"
JAMg_model_13141.1	7	Reactome: R-HSA-68877;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-6811434;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-141444	"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_20101.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_6678.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_18210.3	5	KEGG: 00900+2.2.1.7;MetaCyc: PWY-6892;KEGG: 00730+2.2.1.7;MetaCyc: PWY-7560;MetaCyc: PWY-6891	"Terpenoid backbone biosynthesis";"Thiazole biosynthesis I (facultative anaerobic bacteria)";"Thiamine metabolism";"Methylerythritol phosphate pathway II";"Thiazole biosynthesis II (aerobic bacteria)"
JAMg_model_15187.4	5	Reactome: R-HSA-5625740;Reactome: R-HSA-111447;Reactome: R-HSA-75035;Reactome: R-HSA-1445148;Reactome: R-HSA-5628897	"RHO GTPases activate PKNs";"Activation of BAD and translocation to mitochondria";"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"TP53 Regulates Metabolic Genes"
JAMg_model_1001.1	2	Reactome: R-HSA-6782315;MetaCyc: PWY-6829	"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)"
JAMg_model_18418.2	3	Reactome: R-HSA-191859;Reactome: R-HSA-72165;Reactome: R-HSA-72163	"snRNP Assembly";"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway"
JAMg_model_9880.1	7	Reactome: R-HSA-500753;MetaCyc: PWY-5686;KEGG: 00240+2.1.3.2;KEGG: 00240+3.5.2.3;KEGG: 00250+2.1.3.2;MetaCyc: PWY-7791;MetaCyc: PWY-7790	"Pyrimidine biosynthesis";"UMP biosynthesis I";"Pyrimidine metabolism";"Pyrimidine metabolism";"Alanine, aspartate and glutamate metabolism";"UMP biosynthesis III";"UMP biosynthesis II"
JAMg_model_11429.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_1730.2	3	Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.4;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_20881.1	16	Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_18228.1	1	Reactome: R-HSA-5576886	"Phase 4 - resting membrane potential"
JAMg_model_18568.2	2	Reactome: R-HSA-2206307;Reactome: R-HSA-2024096	"MPS IIIA - Sanfilippo syndrome A";"HS-GAG degradation"
JAMg_model_16814.1	2	KEGG: 00230+3.5.3.4;MetaCyc: PWY-5697	"Purine metabolism";"Allantoin degradation to ureidoglycolate I (urea producing)"
JAMg_model_13054.10	3	MetaCyc: PWY-7174;MetaCyc: PWY-4361;KEGG: 00270+5.3.1.23	"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism"
JAMg_model_21118.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_15830.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_5317.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_14645.2	2	Reactome: R-HSA-9603798;Reactome: R-HSA-1369062	"Class I peroxisomal membrane protein import";"ABC transporters in lipid homeostasis"
JAMg_model_1475.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_10079.1	7	Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-4615885	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"SUMOylation of DNA replication proteins"
JAMg_model_12824.1	6	Reactome: R-HSA-8874081;Reactome: R-HSA-2022090;Reactome: R-HSA-3000171;Reactome: R-HSA-1650814;Reactome: R-HSA-8948216;Reactome: R-HSA-1442490	"MET activates PTK2 signaling";"Assembly of collagen fibrils and other multimeric structures";"Non-integrin membrane-ECM interactions";"Collagen biosynthesis and modifying enzymes";"Collagen chain trimerization";"Collagen degradation"
JAMg_model_18199.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_16523.1	1	Reactome: R-HSA-5689603	"UCH proteinases"
JAMg_model_2281.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_7699.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_8137.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-8866654	"Protein ubiquitination";"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_17695.1	7	Reactome: R-HSA-264870;Reactome: R-HSA-375165;Reactome: R-HSA-6807878;Reactome: R-HSA-5673001;Reactome: R-HSA-6798695;Reactome: R-HSA-445095;Reactome: R-HSA-373753	"Caspase-mediated cleavage of cytoskeletal proteins";"NCAM signaling for neurite out-growth";"COPI-mediated anterograde transport";"RAF/MAP kinase cascade";"Neutrophil degranulation";"Interaction between L1 and Ankyrins";"Nephrin family interactions"
JAMg_model_17170.2	17	MetaCyc: PWY-5695;MetaCyc: PWY-6608;MetaCyc: PWY-6627;KEGG: 00760+2.4.2.1;MetaCyc: PWY-6644;MetaCyc: PWY-7179;Reactome: R-HSA-74259;KEGG: 00240+2.4.2.1;MetaCyc: PWY-6611;MetaCyc: PWY-7179-1;MetaCyc: PWY-4202;MetaCyc: PWY-6609;MetaCyc: PWY-6620;Reactome: R-HSA-74217;MetaCyc: PWY-5532;KEGG: 00230+2.4.2.1;Reactome: R-HSA-6798695	"Inosine 5'-phosphate degradation";"Guanosine nucleotides degradation III";"Salinosporamide A biosynthesis";"Nicotinate and nicotinamide metabolism";"Fluoroacetate and fluorothreonine biosynthesis";"Purine deoxyribonucleosides degradation I";"Purine catabolism";"Pyrimidine metabolism";"Adenine and adenosine salvage V";"Purine deoxyribonucleosides degradation II";"Arsenate detoxification I (mammalian)";"Adenine and adenosine salvage III";"Guanine and guanosine salvage";"Purine salvage";"Nucleoside and nucleotide degradation (archaea)";"Purine metabolism";"Neutrophil degranulation"
JAMg_model_12948.3	1	Reactome: R-HSA-390522	"Striated Muscle Contraction"
JAMg_model_1474.1	4	Reactome: R-HSA-9646399;Reactome: R-HSA-3899300;Reactome: R-HSA-9613829;Reactome: R-HSA-9615710	"Aggrephagy";"SUMOylation of transcription cofactors";"Chaperone Mediated Autophagy";"Late endosomal microautophagy"
JAMg_model_16769.1	4	Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837;Reactome: R-HSA-1912420	"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases";"Pre-NOTCH Processing in Golgi"
JAMg_model_18028.1	2	Reactome: R-HSA-1236394;Reactome: R-HSA-977443	"Signaling by ERBB4";"GABA receptor activation"
JAMg_model_1147.2	2	Reactome: R-HSA-5218920;Reactome: R-HSA-418990	"VEGFR2 mediated vascular permeability";"Adherens junctions interactions"
JAMg_model_8478.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_15955.1	11	Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-2132295;Reactome: R-HSA-5620912;Reactome: R-HSA-6811436;Reactome: R-HSA-6807878;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-2565942;Reactome: R-HSA-3371497	"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"MHC class II antigen presentation";"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)"
JAMg_model_6002.2	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4046.2	2	Reactome: R-HSA-5357905;Reactome: R-HSA-8876198	"Regulation of TNFR1 signaling";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_17296.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_17730.2	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_7189.5	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_4840.3	10	Reactome: R-HSA-983231;Reactome: R-HSA-9022699;Reactome: R-HSA-9022702;Reactome: R-HSA-427413;Reactome: R-HSA-9022538;Reactome: R-HSA-9022692;Reactome: R-HSA-8936459;Reactome: R-HSA-9615017;Reactome: R-HSA-400206;Reactome: R-HSA-3899300	"Factors involved in megakaryocyte development and platelet production";"MECP2 regulates neuronal receptors and channels";"MECP2 regulates transcription of neuronal ligands";"NoRC negatively regulates rRNA expression";"Loss of MECP2 binding ability to 5mC-DNA";"Regulation of MECP2 expression and activity";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Regulation of lipid metabolism by PPARalpha";"SUMOylation of transcription cofactors"
JAMg_model_17170.1	17	MetaCyc: PWY-5695;MetaCyc: PWY-6608;KEGG: 00760+2.4.2.1;MetaCyc: PWY-6627;Reactome: R-HSA-74259;MetaCyc: PWY-6644;MetaCyc: PWY-7179;KEGG: 00240+2.4.2.1;MetaCyc: PWY-6611;MetaCyc: PWY-7179-1;MetaCyc: PWY-4202;MetaCyc: PWY-6609;MetaCyc: PWY-6620;MetaCyc: PWY-5532;Reactome: R-HSA-74217;KEGG: 00230+2.4.2.1;Reactome: R-HSA-6798695	"Inosine 5'-phosphate degradation";"Guanosine nucleotides degradation III";"Nicotinate and nicotinamide metabolism";"Salinosporamide A biosynthesis";"Purine catabolism";"Fluoroacetate and fluorothreonine biosynthesis";"Purine deoxyribonucleosides degradation I";"Pyrimidine metabolism";"Adenine and adenosine salvage V";"Purine deoxyribonucleosides degradation II";"Arsenate detoxification I (mammalian)";"Adenine and adenosine salvage III";"Guanine and guanosine salvage";"Nucleoside and nucleotide degradation (archaea)";"Purine salvage";"Purine metabolism";"Neutrophil degranulation"
JAMg_model_1096.2	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_7957.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_18195.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_340.5	1	Reactome: R-HSA-427652	"Sodium-coupled phosphate cotransporters"
JAMg_model_4219.2	2	Reactome: R-HSA-429947;Reactome: R-HSA-6804115	"Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain"
JAMg_model_12979.1	18	MetaCyc: PWY-7227;MetaCyc: PWY-7176;MetaCyc: PWY-7222;MetaCyc: PWY-7224;MetaCyc: PWY-7205;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7187;MetaCyc: PWY-7221;KEGG: 00230+2.7.4.6;MetaCyc: PWY-7226;MetaCyc: PWY-7197;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7184;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7210;MetaCyc: PWY-7220;MetaCyc: PWY-7198	"Adenosine deoxyribonucleotides de novo biosynthesis";"UTP and CTP de novo biosynthesis";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Purine deoxyribonucleosides salvage";"CMP phosphorylation";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV"
JAMg_model_16066.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_15420.1	3	MetaCyc: PWY-6348;KEGG: 00740+3.1.3.2;KEGG: 00730+3.1.3.2	"Phosphate acquisition";"Riboflavin metabolism";"Thiamine metabolism"
JAMg_model_17269.1	3	MetaCyc: PWY-8106;Reactome: R-HSA-6782315;MetaCyc: PWY-6700	"Queuosine biosynthesis III (queuosine salvage)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis I (de novo)"
JAMg_model_17826.1	1	Reactome: R-HSA-901032	"ER Quality Control Compartment (ERQC)"
JAMg_model_17353.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_174.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_1298.1	19	Reactome: R-HSA-3000484;Reactome: R-HSA-8856825;Reactome: R-HSA-3000471;Reactome: R-HSA-8964026;Reactome: R-HSA-8856828;Reactome: R-HSA-3000480;Reactome: R-HSA-8957275;Reactome: R-HSA-202733;Reactome: R-HSA-8964038;Reactome: R-HSA-5686938;Reactome: R-HSA-975634;Reactome: R-HSA-432142;Reactome: R-HSA-381426;Reactome: R-HSA-8963888;Reactome: R-HSA-8866423;Reactome: R-HSA-8964041;Reactome: R-HSA-3000497;Reactome: R-HSA-8963901;Reactome: R-HSA-8964046	"Scavenging by Class F Receptors";"Cargo recognition for clathrin-mediated endocytosis";"Scavenging by Class B Receptors";"Chylomicron clearance";"Clathrin-mediated endocytosis";"Scavenging by Class A Receptors";"Post-translational protein phosphorylation";"Cell surface interactions at the vascular wall";"LDL clearance";"Regulation of TLR by endogenous ligand";"Retinoid metabolism and transport";"Platelet sensitization by LDL";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Chylomicron assembly";"VLDL assembly";"LDL remodeling";"Scavenging by Class H Receptors";"Chylomicron remodeling";"VLDL clearance"
JAMg_model_11069.2	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_19511.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_13313.1	3	Reactome: R-HSA-749476;Reactome: R-HSA-76061;Reactome: R-HSA-76066	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_7346.2	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_15388.2	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_418.1	14	MetaCyc: PWY-7587;MetaCyc: PWY-8051;MetaCyc: PWY-7589;MetaCyc: PWY-5981;MetaCyc: PWY-8053;KEGG: 00564+2.3.1.51;MetaCyc: PWY-7782;MetaCyc: PWY-5667;KEGG: 00561+2.3.1.51;MetaCyc: PWY-7417;Reactome: R-HSA-1483166;MetaCyc: PWY-7411;MetaCyc: PWY-8055;MetaCyc: PWY-6453	"Oleate biosynthesis III (cyanobacteria)";"Anandamide biosynthesis I";"Palmitoleate biosynthesis III (cyanobacteria)";"CDP-diacylglycerol biosynthesis III";"Anandamide biosynthesis II";"Glycerophospholipid metabolism";"Plasmalogen biosynthesis";"CDP-diacylglycerol biosynthesis I";"Glycerolipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Synthesis of PA";"Phosphatidate biosynthesis (yeast)";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis"
JAMg_model_9164.3	4	Reactome: R-HSA-379716;Reactome: R-HSA-2408557;KEGG: 00970+6.1.1.11;MetaCyc: PWY-6281	"Cytosolic tRNA aminoacylation";"Selenocysteine synthesis";"Aminoacyl-tRNA biosynthesis";"L-selenocysteine biosynthesis II (archaea and eukaryotes)"
JAMg_model_3833.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_14215.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_18382.2	2	Reactome: R-HSA-72702;Reactome: R-HSA-72706	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_18669.1	10	Reactome: R-HSA-163680;Reactome: R-HSA-380972;Reactome: R-HSA-6804756;Reactome: R-HSA-1632852;Reactome: R-HSA-2151209;Reactome: R-HSA-1445148;Reactome: R-HSA-9613354;Reactome: R-HSA-200425;Reactome: R-HSA-9619483;Reactome: R-HSA-5628897	"AMPK inhibits chREBP transcriptional activation activity";"Energy dependent regulation of mTOR by LKB1-AMPK";"Regulation of TP53 Activity through Phosphorylation";"Macroautophagy";"Activation of PPARGC1A (PGC-1alpha) by phosphorylation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Lipophagy";"Carnitine metabolism";"Activation of AMPK downstream of NMDARs";"TP53 Regulates Metabolic Genes"
JAMg_model_11737.5	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_18080.2	6	Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_7726.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_6805.1	1	Reactome: R-HSA-5635838	"Activation of SMO"
JAMg_model_538.1	2	Reactome: R-HSA-1237112;Reactome: R-HSA-8950505	"Methionine salvage pathway";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_20101.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_8914.1	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_1359.6	12	Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-193648;Reactome: R-HSA-416476	"DCC mediated attractive signaling";"Human cytomegalovirus infection";"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Rho GTPase cycle";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"NRAGE signals death through JNK";"G alpha (q) signalling events"
JAMg_model_13995.1	56	Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-4641258;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902	"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Degradation of DVL";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity"
JAMg_model_8476.4	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_10826.1	11	Reactome: R-HSA-3656253;Reactome: R-HSA-4420332;Reactome: R-HSA-3560801;Reactome: R-HSA-3656237;Reactome: R-HSA-202733;Reactome: R-HSA-3000170;Reactome: R-HSA-975634;Reactome: R-HSA-3560783;Reactome: R-HSA-1971475;Reactome: R-HSA-2022928;Reactome: R-HSA-2024096	"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"Defective B3GALT6 causes EDSP2 and SEMDJL1";"Defective B3GAT3 causes JDSSDHD";"Defective EXT2 causes exostoses 2";"Cell surface interactions at the vascular wall";"Syndecan interactions";"Retinoid metabolism and transport";"Defective B4GALT7 causes EDS, progeroid type";"A tetrasaccharide linker sequence is required for GAG synthesis";"HS-GAG biosynthesis";"HS-GAG degradation"
JAMg_model_883.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_5114.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_10889.1	8	KEGG: 00051+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00052+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1	"Fructose and mannose metabolism";"Glycolysis / Gluconeogenesis";"Neomycin, kanamycin and gentamicin biosynthesis";"Galactose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism";"Streptomycin biosynthesis";"Starch and sucrose metabolism"
JAMg_model_3046.1	26	Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-8955332;Reactome: R-HSA-389977;Reactome: R-HSA-6811434;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-389960;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436	"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Carboxyterminal post-translational modifications of tubulin";"Post-chaperonin tubulin folding pathway";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Kinesins";"Formation of tubulin folding intermediates by CCT/TriC";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_2455.1	2	Reactome: R-HSA-1660662;Reactome: R-HSA-1663150	"Glycosphingolipid metabolism";"The activation of arylsulfatases"
JAMg_model_9906.1	2	Reactome: R-HSA-444821;Reactome: R-HSA-418555	"Relaxin receptors";"G alpha (s) signalling events"
JAMg_model_9947.4	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_7974.1	1	Reactome: R-HSA-72203	"Processing of Capped Intron-Containing Pre-mRNA"
JAMg_model_11796.1	16	Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-426496;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-2559580;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884	"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Post-transcriptional silencing by small RNAs";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Oxidative Stress Induced Senescence";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX"
JAMg_model_742.1	1	Reactome: R-HSA-4085001	"Sialic acid metabolism"
JAMg_model_6910.2	6	Reactome: R-HSA-428930;Reactome: R-HSA-416476;Reactome: R-HSA-399997;Reactome: R-HSA-434316;Reactome: R-HSA-418592;Reactome: R-HSA-456926	"Thromboxane signalling through TP receptor";"G alpha (q) signalling events";"Acetylcholine regulates insulin secretion";"Fatty Acids bound to GPR40 (FFAR1) regulate insulin secretion";"ADP signalling through P2Y purinoceptor 1";"Thrombin signalling through proteinase activated receptors (PARs)"
JAMg_model_10125.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_6103.1	9	MetaCyc: PWY-5744;MetaCyc: PWY-241;MetaCyc: PWY-5789;MetaCyc: PWY-7115;Reactome: R-HSA-1475029;KEGG: 00910+4.2.1.1;MetaCyc: PWY-7117;MetaCyc: PWY-6142;MetaCyc: PWY-5743	"Glyoxylate assimilation";"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Reversible hydration of carbon dioxide";"Nitrogen metabolism";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"3-hydroxypropanoate cycle"
JAMg_model_4813.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_1208.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_13105.1	1	Reactome: R-HSA-5657655	"MGMT-mediated DNA damage reversal"
JAMg_model_9850.1	1	Reactome: R-HSA-212436	"Generic Transcription Pathway"
JAMg_model_10448.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_947.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_13397.3	7	MetaCyc: PWY-7782;Reactome: R-HSA-1483191;MetaCyc: PWY-3385;Reactome: R-HSA-1483213;MetaCyc: PWY-7818;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7886	"Plasmalogen biosynthesis";"Synthesis of PC";"Choline biosynthesis I";"Synthesis of PE";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)";"Glycerophospholipid metabolism";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis"
JAMg_model_9200.5	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_8766.1	7	Reactome: R-HSA-5368598;Reactome: R-HSA-201681;Reactome: R-HSA-5663220;Reactome: R-HSA-4641262;Reactome: R-HSA-201688;Reactome: R-HSA-4086400;Reactome: R-HSA-4641258	"Negative regulation of TCF-dependent signaling by DVL-interacting proteins";"TCF dependent signaling in response to WNT";"RHO GTPases Activate Formins";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"WNT mediated activation of DVL";"PCP/CE pathway";"Degradation of DVL"
JAMg_model_17490.1	5	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;Reactome: R-HSA-5675221;Reactome: R-HSA-112409	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Negative regulation of MAPK pathway";"RAF-independent MAPK1/3 activation"
JAMg_model_5690.2	2	Reactome: R-HSA-606279;Reactome: R-HSA-6783310	"Deposition of new CENPA-containing nucleosomes at the centromere";"Fanconi Anemia Pathway"
JAMg_model_18567.3	7	MetaCyc: PWY-7456;MetaCyc: PWY-5659;KEGG: 00051+5.4.2.8;MetaCyc: PWY-7586;MetaCyc: PWY-882;KEGG: 00520+5.4.2.8;Reactome: R-HSA-446205	"Beta-(1,4)-mannan degradation";"GDP-mannose biosynthesis";"Fructose and mannose metabolism";"Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation";"L-ascorbate biosynthesis I (L-galactose pathway)";"Amino sugar and nucleotide sugar metabolism";"Synthesis of GDP-mannose"
JAMg_model_11526.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_2764.1	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_15348.1	3	Reactome: R-HSA-379716;KEGG: 00970+6.1.1.14;Reactome: R-HSA-379726	"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation"
JAMg_model_8812.1	13	Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_3706.1	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_5262.5	2	Reactome: R-HSA-379716;KEGG: 00970+6.1.1.1	"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_5672.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_12556.1	3	KEGG: 00534+5.1.3.17;MetaCyc: PWY-6558;Reactome: R-HSA-2022928	"Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"Heparan sulfate biosynthesis (late stages)";"HS-GAG biosynthesis"
JAMg_model_12827.1	2	Reactome: R-HSA-5693568;Reactome: R-HSA-6783310	"Resolution of D-loop Structures through Holliday Junction Intermediates";"Fanconi Anemia Pathway"
JAMg_model_7013.1	2	Reactome: R-HSA-5578998;Reactome: R-HSA-174403	"Defective OPLAH causes 5-oxoprolinase deficiency (OPLAHD)";"Glutathione synthesis and recycling"
JAMg_model_14413.1	4	MetaCyc: PWY-6855;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00520+3.2.1.14	"Chitin degradation I (archaea)";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_7926.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_12605.1	1	Reactome: R-HSA-2559584	"Formation of Senescence-Associated Heterochromatin Foci (SAHF)"
JAMg_model_20805.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_4533.1	3	Reactome: R-HSA-189451;MetaCyc: PWY-7159;KEGG: 00860+1.3.3.3	"Heme biosynthesis";"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"Porphyrin and chlorophyll metabolism"
JAMg_model_3162.1	6	Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_11403.4	6	Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-176974;Reactome: R-HSA-68867;Reactome: R-HSA-176187;Reactome: R-HSA-69052	"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Unwinding of DNA";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress";"Switching of origins to a post-replicative state"
JAMg_model_14775.1	9	Reactome: R-HSA-5673001;Reactome: R-HSA-6794361;Reactome: R-HSA-3928662;Reactome: R-HSA-9609736;Reactome: R-HSA-438066;Reactome: R-HSA-9620244;Reactome: R-HSA-8849932;Reactome: R-HSA-9617324;Reactome: R-HSA-442982	"RAF/MAP kinase cascade";"Neurexins and neuroligins";"EPHB-mediated forward signaling";"Assembly and cell surface presentation of NMDA receptors";"Unblocking of NMDA receptors, glutamate binding and activation";"Long-term potentiation";"Synaptic adhesion-like molecules";"Negative regulation of NMDA receptor-mediated neuronal transmission";"Ras activation upon Ca2+ influx through NMDA receptor"
JAMg_model_9043.2	9	Reactome: R-HSA-2426168;Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-1368108;Reactome: R-HSA-2151201;Reactome: R-HSA-1989781;Reactome: R-HSA-5617472;Reactome: R-HSA-400253;Reactome: R-HSA-1368082	"Activation of gene expression by SREBF (SREBP)";"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Transcriptional activation of mitochondrial biogenesis";"PPARA activates gene expression";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Circadian Clock";"RORA activates gene expression"
JAMg_model_1113.2	1	MetaCyc: PWY-6829	"Trna methylation (yeast)"
JAMg_model_15277.2	10	MetaCyc: PWY-1722;KEGG: 00720+1.5.1.5+3.5.4.9;KEGG: 00670+1.5.1.5+3.5.4.9;MetaCyc: PWY-2201;MetaCyc: PWY-5497;MetaCyc: PWY-3841;MetaCyc: PWY-6613;MetaCyc: PWY-7909;Reactome: R-HSA-196757;MetaCyc: PWY-5030	"Formate assimilation into 5,10-methylenetetrahydrofolate";"Carbon fixation pathways in prokaryotes";"One carbon pool by folate";"Folate transformations I";"Purine nucleobases degradation II (anaerobic)";"Folate transformations II (plants)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Formaldehyde oxidation VII (THF pathway)";"Metabolism of folate and pterines";"L-histidine degradation III"
JAMg_model_8499.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_8348.1	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_5066.2	18	KEGG: 00220+2.6.1.1;KEGG: 00360+2.6.1.1;MetaCyc: PWY-6638;MetaCyc: PWY-7115;MetaCyc: PWY-7117;KEGG: 00960+2.6.1.1;MetaCyc: PWY-6642;KEGG: 00710+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00400+2.6.1.1;KEGG: 00950+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00250+2.6.1.1;KEGG: 00270+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00401+2.6.1.1;MetaCyc: PWY-6643;MetaCyc: PWY-7383	"Arginine biosynthesis";"Phenylalanine metabolism";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Tropane, piperidine and pyridine alkaloid biosynthesis";"(R)-cysteate degradation";"Carbon fixation in photosynthetic organisms";"Arginine and proline metabolism";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Isoquinoline alkaloid biosynthesis";"Tyrosine metabolism";"Alanine, aspartate and glutamate metabolism";"Cysteine and methionine metabolism";"Partial TCA cycle (obligate autotrophs)";"Novobiocin biosynthesis";"Coenzyme M biosynthesis II";"Anaerobic energy metabolism (invertebrates, cytosol)"
JAMg_model_4998.5	1	Reactome: R-HSA-162658	"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_13244.1	7	Reactome: R-HSA-210500;MetaCyc: PWY-5921;Reactome: R-HSA-8964539;KEGG: 00250+3.5.1.2;Reactome: R-HSA-5628897;KEGG: 00471+3.5.1.2;KEGG: 00220+3.5.1.2	"Glutamate Neurotransmitter Release Cycle";"Glutaminyl-trnagln biosynthesis via transamidation";"Glutamate and glutamine metabolism";"Alanine, aspartate and glutamate metabolism";"TP53 Regulates Metabolic Genes";"D-Glutamine and D-glutamate metabolism";"Arginine biosynthesis"
JAMg_model_7320.1	8	KEGG: 00240+2.7.4.9;MetaCyc: PWY-7184;MetaCyc: PWY-7197;Reactome: R-HSA-499943;MetaCyc: PWY-6545;MetaCyc: PWY-7210;MetaCyc: PWY-7198;MetaCyc: PWY-7187	"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides de novo biosynthesis II"
JAMg_model_3303.5	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_16553.1	2	Reactome: R-HSA-389661;Reactome: R-HSA-9033241	"Glyoxylate metabolism and glycine degradation";"Peroxisomal protein import"
JAMg_model_19874.4	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4808.3	2	Reactome: R-HSA-8949215;Reactome: R-HSA-5689880	"Mitochondrial calcium ion transport";"Ub-specific processing proteases"
JAMg_model_9424.1	2	Reactome: R-HSA-975957;Reactome: R-HSA-9010553	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs"
JAMg_model_10014.1	1	Reactome: R-HSA-1237044	"Erythrocytes take up carbon dioxide and release oxygen"
JAMg_model_7598.1	1	Reactome: R-HSA-3108214	"SUMOylation of DNA damage response and repair proteins"
JAMg_model_1791.1	3	Reactome: R-HSA-110329;Reactome: R-HSA-110357;Reactome: R-HSA-110328	"Cleavage of the damaged pyrimidine";"Displacement of DNA glycosylase by APEX1";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine"
JAMg_model_19316.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8118.1	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_17907.3	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_8220.5	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_1147.6	2	Reactome: R-HSA-5218920;Reactome: R-HSA-418990	"VEGFR2 mediated vascular permeability";"Adherens junctions interactions"
JAMg_model_3677.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_20674.2	56	Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733	"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation"
JAMg_model_11737.3	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_14961.1	4	MetaCyc: PWY-7382;MetaCyc: PWY-6987;Reactome: R-HSA-389661;KEGG: 00785+2.8.1.8	"Lipoate biosynthesis and incorporation IV (yeast)";"Lipoate biosynthesis and incorporation III (Bacillus)";"Glyoxylate metabolism and glycine degradation";"Lipoic acid metabolism"
JAMg_model_10448.2	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_1428.1	2	Reactome: R-HSA-5673001;Reactome: R-HSA-442982	"RAF/MAP kinase cascade";"Ras activation upon Ca2+ influx through NMDA receptor"
JAMg_model_19199.1	1	KEGG: 00970+6.1.1.3	"Aminoacyl-tRNA biosynthesis"
JAMg_model_16268.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_4169.1	13	Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_20437.1	1	Reactome: R-HSA-6782861	"Synthesis of wybutosine at G37 of tRNA(Phe)"
JAMg_model_16308.1	8	Reactome: R-HSA-5628897;Reactome: R-HSA-9639288;Reactome: R-HSA-3371571;Reactome: R-HSA-165159;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-166208;Reactome: R-HSA-380972	"TP53 Regulates Metabolic Genes";"Amino acids regulate mTORC1";"HSF1-dependent transactivation";"mTOR signalling";"Macroautophagy";"Regulation of PTEN gene transcription";"mTORC1-mediated signalling";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_850.2	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_5993.1	1	Reactome: R-HSA-8943724	"Regulation of PTEN gene transcription"
JAMg_model_10033.1	5	Reactome: R-HSA-9033241;Reactome: R-HSA-9033500;KEGG: 00565+2.5.1.26;MetaCyc: PWY-7782;Reactome: R-HSA-75896	"Peroxisomal protein import";"TYSND1 cleaves peroxisomal proteins";"Ether lipid metabolism";"Plasmalogen biosynthesis";"Plasmalogen biosynthesis"
JAMg_model_2273.4	2	MetaCyc: PWY-6981;KEGG: 00520+2.4.1.16	"Chitin biosynthesis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_19116.5	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_13932.2	1	Reactome: R-HSA-6802952	"Signaling by BRAF and RAF fusions"
JAMg_model_14930.1	1	Reactome: R-HSA-427975	"Proton/oligopeptide cotransporters"
JAMg_model_342.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_9054.5	3	MetaCyc: PWY-6117;KEGG: 00330+2.3.1.57;MetaCyc: PWY-0	"Spermine and spermidine degradation I";"Arginine and proline metabolism";"Putrescine degradation III"
JAMg_model_20218.2	2	Reactome: R-HSA-5173105;Reactome: R-HSA-5083628	"O-linked glycosylation";"Defective POMGNT1 causes MDDGA3, MDDGB3 and MDDGC3"
JAMg_model_2777.6	14	Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-426486;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-203927;Reactome: R-HSA-426496;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519	"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Small interfering RNA (siRNA) biogenesis";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"MicroRNA (miRNA) biogenesis";"Post-transcriptional silencing by small RNAs";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression"
JAMg_model_21357.3	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-380284	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome"
JAMg_model_907.12	8	Reactome: R-HSA-8856825;Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-432720;Reactome: R-HSA-190873;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-5099900	"Cargo recognition for clathrin-mediated endocytosis";"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"Lysosome Vesicle Biogenesis";"Gap junction degradation";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4"
JAMg_model_7011.2	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_1474.3	4	Reactome: R-HSA-9646399;Reactome: R-HSA-9615710;Reactome: R-HSA-9613829;Reactome: R-HSA-3899300	"Aggrephagy";"Late endosomal microautophagy";"Chaperone Mediated Autophagy";"SUMOylation of transcription cofactors"
JAMg_model_10341.1	3	Reactome: R-HSA-3000157;Reactome: R-HSA-8874081;Reactome: R-HSA-3000171	"Laminin interactions";"MET activates PTK2 signaling";"Non-integrin membrane-ECM interactions"
JAMg_model_1876.3	11	Reactome: R-HSA-6785631;Reactome: R-HSA-2219530;Reactome: R-HSA-6811558;Reactome: R-HSA-1963642;Reactome: R-HSA-5673001;Reactome: R-HSA-1257604;Reactome: R-HSA-8863795;Reactome: R-HSA-1250196;Reactome: R-HSA-1227986;Reactome: R-HSA-8847993;Reactome: R-HSA-9664565	"ERBB2 Regulates Cell Motility";"Constitutive Signaling by Aberrant PI3K in Cancer";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"PI3K events in ERBB2 signaling";"RAF/MAP kinase cascade";"PIP3 activates AKT signaling";"Downregulation of ERBB2 signaling";"SHC1 events in ERBB2 signaling";"Signaling by ERBB2";"ERBB2 Activates PTK6 Signaling";"Signaling by ERBB2 KD Mutants"
JAMg_model_18015.2	5	Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-3214815;Reactome: R-HSA-350054;Reactome: R-HSA-2644606	"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"HDACs deacetylate histones";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_10327.1	7	Reactome: R-HSA-429958;Reactome: R-HSA-450604;Reactome: R-HSA-1369062;Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-380994;Reactome: R-HSA-6791226	"mRNA decay by 3' to 5' exoribonuclease";"KSRP (KHSRP) binds and destabilizes mRNA";"ABC transporters in lipid homeostasis";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_2477.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_460.2	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_13140.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_12452.1	1	Reactome: R-HSA-77289	"Mitochondrial Fatty Acid Beta-Oxidation"
JAMg_model_20692.2	1	Reactome: R-HSA-1234174	"Cellular response to hypoxia"
JAMg_model_9188.1	6	KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;Reactome: R-HSA-114508;MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107	"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Effects of PIP2 hydrolysis";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism"
JAMg_model_19503.3	40	KEGG: 00623+1.1.1.35;MetaCyc: PWY-1361;KEGG: 00640+4.2.1.17;KEGG: 00281+4.2.1.17+1.1.1.35;KEGG: 00930+4.2.1.17+1.1.1.35;MetaCyc: PWY-7606;MetaCyc: PWY-7779;MetaCyc: PWY-7216;KEGG: 00720+4.2.1.17+1.1.1.35;MetaCyc: PWY-6946;MetaCyc: PWY-7094;MetaCyc: PWY-6863;MetaCyc: PWY-7654;MetaCyc: PWY-5136;KEGG: 00062+4.2.1.17+1.1.1.35;KEGG: 00650+4.2.1.17+1.1.1.35;MetaCyc: PWY-6945;MetaCyc: PWY-6435;MetaCyc: PWY-7778;KEGG: 00903+4.2.1.17;MetaCyc: PWY-6944;MetaCyc: PWY-7007;KEGG: 00362+4.2.1.17+1.1.1.35;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-5109;MetaCyc: PWY-7726;MetaCyc: PWY-7401;KEGG: 00071+4.2.1.17+1.1.1.35;KEGG: 00592+4.2.1.17;MetaCyc: PWY-7656;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-6883;KEGG: 00310+4.2.1.17+1.1.1.35;MetaCyc: PWY-5789;KEGG: 00360+4.2.1.17;KEGG: 00627+4.2.1.17;KEGG: 00410+4.2.1.17;MetaCyc: PWY-5177;MetaCyc: PWY-6583;MetaCyc: PWY-5138	"Toluene degradation";"Benzoyl-coa degradation I (aerobic)";"Propanoate metabolism";"Geraniol degradation";"Caprolactam degradation";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Methyl tert-butyl ether degradation";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Carbon fixation pathways in prokaryotes";"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Fatty acid salvage";"Pyruvate fermentation to hexanol (engineered)";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Fatty acid beta-oxidation II (plant peroxisome)";"Fatty acid elongation";"Butanoate metabolism";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"4-hydroxybenzoate biosynthesis III (plants)";"2-methylpropene degradation";"Limonene and pinene degradation";"Androstenedione degradation";"Methyl ketone biosynthesis (engineered)";"Benzoate degradation";"Tryptophan metabolism";"Fermentation to 2-methylbutanoate";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"Spodoptera littoralis pheromone biosynthesis";"Valine, leucine and isoleucine degradation";"Pyruvate fermentation to butanol II (engineered)";"Lysine degradation";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Phenylalanine metabolism";"Aminobenzoate degradation";"beta-Alanine metabolism";"Glutaryl-coa degradation";"Pyruvate fermentation to butanol I";"Fatty acid beta-oxidation IV (unsaturated, even number)"
JAMg_model_4541.6	7	Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_492.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19491.8	4	MetaCyc: PWY-7250;KEGG: 00730+2.8.1.7;Reactome: R-HSA-1362409;Reactome: R-HSA-947581	"[2Fe-2S] iron-sulfur cluster biosynthesis";"Thiamine metabolism";"Mitochondrial iron-sulfur cluster biogenesis";"Molybdenum cofactor biosynthesis"
JAMg_model_2595.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_21130.1	6	Reactome: R-HSA-9033241;KEGG: 00380+1.11.1.6;Reactome: R-HSA-3299685;Reactome: R-HSA-9615017;KEGG: 00630+1.11.1.6;Reactome: R-HSA-6798695	"Peroxisomal protein import";"Tryptophan metabolism";"Detoxification of Reactive Oxygen Species";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Glyoxylate and dicarboxylate metabolism";"Neutrophil degranulation"
JAMg_model_9564.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19035.2	3	MetaCyc: PWY-3961;KEGG: 00770+2.7.1.33;Reactome: R-HSA-196783	"Phosphopantothenate biosynthesis II";"Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis"
JAMg_model_13894.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_3750.1	6	Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-6791226;Reactome: R-HSA-380994;Reactome: R-HSA-450513;Reactome: R-HSA-450385	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Major pathway of rRNA processing in the nucleolus and cytosol";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA"
JAMg_model_17734.9	5	MetaCyc: PWY-5189;Reactome: R-HSA-189451;KEGG: 00860+4.2.1.24;MetaCyc: PWY-5188;Reactome: R-HSA-6798695	"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)";"Neutrophil degranulation"
JAMg_model_13220.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_8436.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_7011.3	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_12281.7	2	Reactome: R-HSA-983231;Reactome: R-HSA-5205685	"Factors involved in megakaryocyte development and platelet production";"Pink/Parkin Mediated Mitophagy"
JAMg_model_21047.1	2	Reactome: R-HSA-72163;Reactome: R-HSA-6807505	"mRNA Splicing - Major Pathway";"RNA polymerase II transcribes snRNA genes"
JAMg_model_8466.1	3	Reactome: R-HSA-5423646;MetaCyc: PWY-7533;Reactome: R-HSA-2142691	"Aflatoxin activation and detoxification";"Gliotoxin biosynthesis";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_15063.1	3	Reactome: R-HSA-1660661;MetaCyc: PWY-5129;KEGG: 00600+1.14.19.17	"Sphingolipid de novo biosynthesis";"Sphingolipid biosynthesis (plants)";"Sphingolipid metabolism"
JAMg_model_15895.3	7	Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-166208;Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-165159;Reactome: R-HSA-5628897	"Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"mTORC1-mediated signalling";"Regulation of PTEN gene transcription";"Macroautophagy";"mTOR signalling";"TP53 Regulates Metabolic Genes"
JAMg_model_12121.5	6	MetaCyc: PWY-6118;Reactome: R-HSA-1483166;KEGG: 00564+1.1.5.3;MetaCyc: PWY-6952;Reactome: R-HSA-163560;MetaCyc: PWY-4261	"Glycerol-3-phosphate shuttle";"Synthesis of PA";"Glycerophospholipid metabolism";"Glycerophosphodiester degradation";"Triglyceride catabolism";"Glycerol degradation I"
JAMg_model_16664.1	11	KEGG: 00480+1.1.1.42;MetaCyc: PWY-7124;MetaCyc: PWY-6728;MetaCyc: PWY-7268;MetaCyc: PWY-5913;MetaCyc: PWY-6969;KEGG: 00020+1.1.1.42;KEGG: 00720+1.1.1.42;MetaCyc: PWY-7254;MetaCyc: PWY-6549;Reactome: R-HSA-71403	"Glutathione metabolism";"Ethylene biosynthesis V (engineered)";"Methylaspartate cycle";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Partial TCA cycle (obligate autotrophs)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Citrate cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"TCA cycle VII (acetate-producers)";"L-glutamine biosynthesis III";"Citric acid cycle (TCA cycle)"
JAMg_model_6003.1	3	Reactome: R-HSA-72163;Reactome: R-HSA-2672351;Reactome: R-HSA-430039	"mRNA Splicing - Major Pathway";"Stimuli-sensing channels";"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_4403.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_1106.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_8812.2	13	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Viral mRNA Translation";"Peptide chain elongation";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_17689.1	2	MetaCyc: PWY-4261;KEGG: 00561+2.7.1.30	"Glycerol degradation I";"Glycerolipid metabolism"
JAMg_model_5184.1	2	Reactome: R-HSA-69273;Reactome: R-HSA-8862803	"Cyclin A/B1/B2 associated events during G2/M transition";"Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models"
JAMg_model_481.1	11	MetaCyc: PWY-7268;MetaCyc: PWY-6728;KEGG: 00480+1.1.1.42;MetaCyc: PWY-7124;Reactome: R-HSA-71403;MetaCyc: PWY-6549;KEGG: 00720+1.1.1.42;MetaCyc: PWY-7254;MetaCyc: PWY-5913;KEGG: 00020+1.1.1.42;MetaCyc: PWY-6969	"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Methylaspartate cycle";"Glutathione metabolism";"Ethylene biosynthesis V (engineered)";"Citric acid cycle (TCA cycle)";"L-glutamine biosynthesis III";"Carbon fixation pathways in prokaryotes";"TCA cycle VII (acetate-producers)";"Partial TCA cycle (obligate autotrophs)";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_10631.1	12	MetaCyc: PWY-8053;KEGG: 00591+3.1.1.4;KEGG: 00592+3.1.1.4;KEGG: 00564+3.1.1.4;MetaCyc: PWY-7783;MetaCyc: PWY-8051;MetaCyc: PWY-7417;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7409;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7416;MetaCyc: PWY-6803	"Anandamide biosynthesis II";"Linoleic acid metabolism";"alpha-Linolenic acid metabolism";"Glycerophospholipid metabolism";"Plasmalogen degradation";"Anandamide biosynthesis I";"Phospholipid remodeling (phosphatidate, yeast)";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Phosphatidylcholine acyl editing"
JAMg_model_8041.1	1	Reactome: R-HSA-69231	"Cyclin D associated events in G1"
JAMg_model_5689.2	2	Reactome: R-HSA-6807505;Reactome: R-HSA-191859	"RNA polymerase II transcribes snRNA genes";"snRNP Assembly"
JAMg_model_6805.4	1	Reactome: R-HSA-5635838	"Activation of SMO"
JAMg_model_11096.1	1	Reactome: R-HSA-376172	"DSCAM interactions"
JAMg_model_11913.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_14482.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_10500.1	5	Reactome: R-HSA-6782210;Reactome: R-HSA-6781823;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-72163	"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of TC-NER Pre-Incision Complex";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"mRNA Splicing - Major Pathway"
JAMg_model_10800.1	8	Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-68952;Reactome: R-HSA-174411;Reactome: R-HSA-174430;Reactome: R-HSA-113501;Reactome: R-HSA-69183;Reactome: R-HSA-68962	"Removal of the Flap Intermediate";"Polymerase switching";"DNA replication initiation";"Polymerase switching on the C-strand of the telomere";"Telomere C-strand synthesis initiation";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Processive synthesis on the lagging strand";"Activation of the pre-replicative complex"
JAMg_model_9766.2	7	KEGG: 04070+3.1.4.11;KEGG: 00562+3.1.4.11;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;MetaCyc: PWY-8052;MetaCyc: PWY-6351;MetaCyc: PWY-7039	"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"2-arachidonoylglycerol biosynthesis";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Phosphatidate metabolism, as a signaling molecule"
JAMg_model_6835.1	2	Reactome: R-HSA-6802953;Reactome: R-HSA-5658442	"RAS signaling downstream of NF1 loss-of-function variants";"Regulation of RAS by GAPs"
JAMg_model_19672.3	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_1040.5	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_4506.1	3	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels"
JAMg_model_15870.2	8	Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00052+2.7.1.1	"Glycolysis";"Amino sugar and nucleotide sugar metabolism";"Streptomycin biosynthesis";"Starch and sucrose metabolism";"Fructose and mannose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Galactose metabolism"
JAMg_model_9881.2	5	KEGG: 00860+2.3.1.37;KEGG: 00260+2.3.1.37;Reactome: R-HSA-189451;MetaCyc: PWY-7536;MetaCyc: PWY-5189	"Porphyrin and chlorophyll metabolism";"Glycine, serine and threonine metabolism";"Heme biosynthesis";"2-amino-3-hydroxycyclopent-2-enone biosynthesis";"Tetrapyrrole biosynthesis II (from glycine)"
JAMg_model_15465.1	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_19302.1	3	Reactome: R-HSA-3108214;Reactome: R-HSA-5696394;Reactome: R-HSA-5696395	"SUMOylation of DNA damage response and repair proteins";"DNA Damage Recognition in GG-NER";"Formation of Incision Complex in GG-NER"
JAMg_model_3411.6	1	Reactome: R-HSA-977347	"Serine biosynthesis"
JAMg_model_11595.1	1	MetaCyc: PWY-7799	"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_11735.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_8464.1	3	MetaCyc: PWY-7533;Reactome: R-HSA-5423646;Reactome: R-HSA-2142691	"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification";"Synthesis of Leukotrienes (LT) and Eoxins (EX)"
JAMg_model_3217.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_20218.1	2	Reactome: R-HSA-5083628;Reactome: R-HSA-5173105	"Defective POMGNT1 causes MDDGA3, MDDGB3 and MDDGC3";"O-linked glycosylation"
JAMg_model_4425.1	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_15512.1	3	KEGG: 00480+4.3.2.9;Reactome: R-HSA-174403;MetaCyc: PWY-4041	"Glutathione metabolism";"Glutathione synthesis and recycling";"Gamma-glutamyl cycle"
JAMg_model_11150.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_15716.1	6	MetaCyc: PWY-7290;Reactome: R-HSA-5083632;KEGG: 00512+2.4.1.122;Reactome: R-HSA-913709;MetaCyc: PWY-7433;KEGG: 00514+2.4.1.122	"Escherichia coli serotype O86 O-antigen biosynthesis";"Defective C1GALT1C1 causes Tn polyagglutination syndrome (TNPS)";"Mucin type O-glycan biosynthesis";"O-linked glycosylation of mucins";"Mucin core 1 and core 2 O-glycosylation";"Other types of O-glycan biosynthesis"
JAMg_model_11703.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_20201.1	8	Reactome: R-HSA-1268020;Reactome: R-HSA-2151201;Reactome: R-HSA-163210;KEGG: 00195+7.1.2.2;Reactome: R-HSA-8949613;KEGG: 00190+7.1.2.2;Reactome: R-HSA-5693607;MetaCyc: PWY-7980	"Mitochondrial protein import";"Transcriptional activation of mitochondrial biogenesis";"Formation of ATP by chemiosmotic coupling";"Photosynthesis";"Cristae formation";"Oxidative phosphorylation";"Processing of DNA double-strand break ends";"ATP biosynthesis"
JAMg_model_9454.2	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_15573.2	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_3425.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_13545.3	1	Reactome: R-HSA-381753	"Olfactory Signaling Pathway"
JAMg_model_13715.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_12130.2	24	Reactome: R-HSA-983189;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295	"Kinesins";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation"
JAMg_model_2682.2	2	Reactome: R-HSA-190873;Reactome: R-HSA-399719	"Gap junction degradation";"Trafficking of AMPA receptors"
JAMg_model_18211.1	2	Reactome: R-HSA-8856828;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_9150.1	7	KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04150+2.7.11.1	"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"Thermogenesis";"Human papillomavirus infection";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"mTOR signaling pathway"
JAMg_model_8934.1	56	Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5610785;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128	"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"GLI3 is processed to GLI3R by the proteasome";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling"
JAMg_model_18210.1	5	MetaCyc: PWY-6892;KEGG: 00730+2.2.1.7;KEGG: 00900+2.2.1.7;MetaCyc: PWY-7560;MetaCyc: PWY-6891	"Thiazole biosynthesis I (facultative anaerobic bacteria)";"Thiamine metabolism";"Terpenoid backbone biosynthesis";"Methylerythritol phosphate pathway II";"Thiazole biosynthesis II (aerobic bacteria)"
JAMg_model_21059.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_15830.2	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_3217.4	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_20576.4	3	Reactome: R-HSA-5620916;Reactome: R-HSA-264876;Reactome: R-HSA-1445148	"VxPx cargo-targeting to cilium";"Insulin processing";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_5740.2	1	Reactome: R-HSA-418594	"G alpha (i) signalling events"
JAMg_model_18816.1	10	KEGG: 00010+2.7.1.11;MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00052+2.7.1.11;MetaCyc: PWY-7385;KEGG: 00030+2.7.1.11;KEGG: 00051+2.7.1.11;Reactome: R-HSA-70171;KEGG: 00680+2.7.1.11;MetaCyc: PWY-1861	"Glycolysis / Gluconeogenesis";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Galactose metabolism";"1,3-propanediol biosynthesis (engineered)";"Pentose phosphate pathway";"Fructose and mannose metabolism";"Glycolysis";"Methane metabolism";"Formaldehyde assimilation II (assimilatory RuMP Cycle)"
JAMg_model_18675.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_10171.1	6	Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-7656;MetaCyc: PWY-6733;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84	"Wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Sporopollenin precursors biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis"
JAMg_model_9804.1	8	Reactome: R-HSA-5628897;Reactome: R-HSA-5620916;Reactome: R-HSA-264876;Reactome: R-HSA-1632852;Reactome: R-HSA-165181;Reactome: R-HSA-1445148;Reactome: R-HSA-380972;Reactome: R-HSA-8854214	"TP53 Regulates Metabolic Genes";"VxPx cargo-targeting to cilium";"Insulin processing";"Macroautophagy";"Inhibition of TSC complex formation by PKB";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Energy dependent regulation of mTOR by LKB1-AMPK";"TBC/RABGAPs"
JAMg_model_18312.1	29	Reactome: R-HSA-912446;Reactome: R-HSA-3371511;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395;Reactome: R-HSA-3371453;Reactome: R-HSA-6804756;Reactome: R-HSA-110314;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-6783310;Reactome: R-HSA-5655862;Reactome: R-HSA-6782135;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-68962;Reactome: R-HSA-174437;Reactome: R-HSA-5358606;Reactome: R-HSA-5358565;Reactome: R-HSA-5696397;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-69166	"Meiotic recombination";"HSF1 activation";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER";"Regulation of HSF1-mediated heat shock response";"Regulation of TP53 Activity through Phosphorylation";"Recognition of DNA damage by PCNA-containing replication complex";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Fanconi Anemia Pathway";"Translesion synthesis by POLK";"Dual incision in TC-NER";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Activation of the pre-replicative complex";"Removal of the Flap Intermediate from the C-strand";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"Removal of the Flap Intermediate"
JAMg_model_114.1	24	Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-983189	"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"Kinesins"
JAMg_model_10020.2	4	Reactome: R-HSA-1855183;KEGG: 00053+1.13.99.1;KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841	"Synthesis of IP2, IP, and Ins in the cytosol";"Ascorbate and aldarate metabolism";"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)"
JAMg_model_12510.2	1	Reactome: R-HSA-6803207	"TP53 Regulates Transcription of Caspase Activators and Caspases"
JAMg_model_3816.1	1	Reactome: R-HSA-2151201	"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_5284.1	1	Reactome: R-HSA-1268020	"Mitochondrial protein import"
JAMg_model_20510.1	12	MetaCyc: PWY-6728;KEGG: 00660+4.1.3.25;MetaCyc: PWY-7118;MetaCyc: PWY-7294;MetaCyc: PWY-5744;MetaCyc: PWY-5749;MetaCyc: PWY-7295;MetaCyc: PWY-7854;KEGG: 00630+3.1.2.30+2.3.3.9;KEGG: 00620+2.3.3.9;KEGG: 00720+4.1.3.25;MetaCyc: PWY-6969	"Methylaspartate cycle";"C5-Branched dibasic acid metabolism";"Chitin degradation to ethanol";"D-xylose degradation IV";"Glyoxylate assimilation";"Itaconate degradation";"L-arabinose degradation IV";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Glyoxylate and dicarboxylate metabolism";"Pyruvate metabolism";"Carbon fixation pathways in prokaryotes";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"
JAMg_model_9141.5	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_1025.2	5	KEGG: 00310+1.2.4.2;KEGG: 00020+1.2.4.2;KEGG: 00380+1.2.4.2;MetaCyc: PWY-5084;Reactome: R-HSA-389661	"Lysine degradation";"Citrate cycle (TCA cycle)";"Tryptophan metabolism";"2-oxoglutarate decarboxylation to succinyl-CoA";"Glyoxylate metabolism and glycine degradation"
JAMg_model_15781.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_16621.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_17178.1	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_18563.1	6	Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-68877;Reactome: R-HSA-9648025	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Mitotic Prometaphase";"EML4 and NUDC in mitotic spindle formation"
JAMg_model_11349.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_2857.1	1	Reactome: R-HSA-9633012	"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_17283.3	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_15193.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_8702.7	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_15970.1	1	Reactome: R-HSA-2129379	"Molecules associated with elastic fibres"
JAMg_model_500.1	1	Reactome: R-HSA-211945	"Phase I - Functionalization of compounds"
JAMg_model_11556.6	15	Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-1912408;Reactome: R-HSA-4086398;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723	"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Pre-NOTCH Transcription and Translation";"Ca2+ pathway";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation"
JAMg_model_8834.4	10	MetaCyc: PWY-7511;Reactome: R-HSA-76042;Reactome: R-HSA-75953;Reactome: R-HSA-73779;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756	"Protein ubiquitination";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_13715.4	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_1641.2	2	Reactome: R-HSA-5610787;Reactome: R-HSA-5620924	"Hedgehog 'off' state";"Intraflagellar transport"
JAMg_model_17078.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_15480.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_16066.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_1173.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_17588.2	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_3007.1	1	Reactome: R-HSA-156584	"Cytosolic sulfonation of small molecules"
JAMg_model_5220.1	1	Reactome: R-HSA-5223345	"Miscellaneous transport and binding events"
JAMg_model_20512.1	3	Reactome: R-HSA-2672351;Reactome: R-HSA-379716;KEGG: 00970+6.1.1.20	"Stimuli-sensing channels";"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_16283.1	4	Reactome: R-HSA-964975;KEGG: 00750+1.4.3.5;MetaCyc: PWY-7204;MetaCyc: PWY-7282	"Vitamins B6 activation to pyridoxal phosphate";"Vitamin B6 metabolism";"Pyridoxal 5'-phosphate salvage II (plants)";"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis"
JAMg_model_18103.1	17	Reactome: R-HSA-69202;Reactome: R-HSA-1912408;Reactome: R-HSA-6804114;Reactome: R-HSA-2173796;Reactome: R-HSA-111448;Reactome: R-HSA-69231;Reactome: R-HSA-2559580;Reactome: R-HSA-1538133;Reactome: R-HSA-8953750;Reactome: R-HSA-113501;Reactome: R-HSA-69205;Reactome: R-HSA-1362277;Reactome: R-HSA-9616222;Reactome: R-HSA-139915;Reactome: R-HSA-2559585;Reactome: R-HSA-1362300;Reactome: R-HSA-69656	"Cyclin E associated events during G1/S transition";"Pre-NOTCH Transcription and Translation";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Activation of NOXA and translocation to mitochondria";"Cyclin D associated events in G1";"Oxidative Stress Induced Senescence";"G0 and Early G1";"Transcriptional Regulation by E2F6";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"G1/S-Specific Transcription";"Transcription of E2F targets under negative control by DREAM complex";"Transcriptional regulation of granulopoiesis";"Activation of PUMA and translocation to mitochondria";"Oncogene Induced Senescence";"Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1";"Cyclin A:Cdk2-associated events at S phase entry"
JAMg_model_20679.1	10	Reactome: R-HSA-8934903;Reactome: R-HSA-6814122;Reactome: R-HSA-201688;Reactome: R-HSA-6798695;Reactome: R-HSA-6804756;Reactome: R-HSA-8948751;Reactome: R-HSA-2514853;Reactome: R-HSA-8939243;Reactome: R-HSA-1483191;Reactome: R-HSA-445144	"Receptor Mediated Mitophagy";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"WNT mediated activation of DVL";"Neutrophil degranulation";"Regulation of TP53 Activity through Phosphorylation";"Regulation of PTEN stability and activity";"Condensation of Prometaphase Chromosomes";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Synthesis of PC";"Signal transduction by L1"
JAMg_model_6318.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_16099.2	1	Reactome: R-HSA-2514853	"Condensation of Prometaphase Chromosomes"
JAMg_model_14777.2	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_17961.1	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_5493.1	2	Reactome: R-HSA-5620924;Reactome: R-HSA-5610787	"Intraflagellar transport";"Hedgehog 'off' state"
JAMg_model_5067.3	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_5495.2	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_13244.3	7	Reactome: R-HSA-8964539;Reactome: R-HSA-5628897;KEGG: 00250+3.5.1.2;MetaCyc: PWY-5921;Reactome: R-HSA-210500;KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2	"Glutamate and glutamine metabolism";"TP53 Regulates Metabolic Genes";"Alanine, aspartate and glutamate metabolism";"Glutaminyl-trnagln biosynthesis via transamidation";"Glutamate Neurotransmitter Release Cycle";"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism"
JAMg_model_8698.1	22	MetaCyc: PWY-7727;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7606;MetaCyc: PWY-6958;MetaCyc: PWY-7035;MetaCyc: PWY-7726;MetaCyc: PWY-5353;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7053;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-5080;MetaCyc: PWY-7049;MetaCyc: PWY-8041;MetaCyc: PWY-7619;MetaCyc: PWY-7728;Reactome: R-HSA-75876;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7592;MetaCyc: PWY-7725	"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"(9Z)-tricosene biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Fatty acid elongation";"Docosahexaenoate biosynthesis I (lower eukaryotes)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Ultra-long-chain fatty acid biosynthesis";"Juniperonate biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Synthesis of very long-chain fatty acyl-CoAs";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)"
JAMg_model_15949.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8298.8	4	Reactome: R-HSA-418359;Reactome: R-HSA-5578775;Reactome: R-HSA-936837;Reactome: R-HSA-1912420	"Reduction of cytosolic Ca++ levels";"Ion homeostasis";"Ion transport by P-type ATPases";"Pre-NOTCH Processing in Golgi"
JAMg_model_16711.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_15137.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_13143.2	3	KEGG: 04070+2.7.4.24+2.7.4.21;Reactome: R-HSA-1855167;MetaCyc: PWY-6369	"Phosphatidylinositol signaling system";"Synthesis of pyrophosphates in the cytosol";"Inositol diphosphates biosynthesis"
JAMg_model_3806.1	1	Reactome: R-HSA-2129379	"Molecules associated with elastic fibres"
JAMg_model_1523.4	2	Reactome: R-HSA-8949613;Reactome: R-HSA-1268020	"Cristae formation";"Mitochondrial protein import"
JAMg_model_18117.6	12	KEGG: 00270+4.4.1.13;MetaCyc: PWY-6842;MetaCyc: PWY-7901;MetaCyc: PWY-801;Reactome: R-HSA-71240;MetaCyc: PWY-2821;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6309;KEGG: 00380+2.6.1.7;MetaCyc: PWY-601;MetaCyc: PWY-1187;MetaCyc: PWY-6936	"Cysteine and methionine metabolism";"Glutathione-mediated detoxification II";"Glucosinolate biosynthesis from tyrosine";"Homocysteine and cysteine interconversion";"Tryptophan catabolism";"Glucosinolate biosynthesis from phenylalanine";"Selenocompound metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Tryptophan metabolism";"Glucosinolate biosynthesis from tryptophan";"Glucosinolate biosynthesis from homomethionine";"Seleno-amino acid biosynthesis (plants)"
JAMg_model_2280.1	2	Reactome: R-HSA-380270;Reactome: R-HSA-380320	"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_10096.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_7900.1	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_5863.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_11773.2	2	Reactome: R-HSA-416476;Reactome: R-HSA-380095	"G alpha (q) signalling events";"Tachykinin receptors bind tachykinins"
JAMg_model_20615.1	5	Reactome: R-HSA-70263;KEGG: 00020+4.1.1.32;KEGG: 00620+4.1.1.32;KEGG: 00010+4.1.1.32;MetaCyc: PWY-7383	"Gluconeogenesis";"Citrate cycle (TCA cycle)";"Pyruvate metabolism";"Glycolysis / Gluconeogenesis";"Anaerobic energy metabolism (invertebrates, cytosol)"
JAMg_model_20372.1	3	Reactome: R-HSA-76071;Reactome: R-HSA-749476;Reactome: R-HSA-6807505	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA polymerase II transcribes snRNA genes"
JAMg_model_13530.1	12	KEGG: 00052+2.7.7.9;KEGG: 00500+2.7.7.9;MetaCyc: PWY-3801;MetaCyc: PWY-7343;MetaCyc: PWY-6527;Reactome: R-HSA-173599;MetaCyc: PWY-7817;MetaCyc: PWY-7238;Reactome: R-HSA-3322077;KEGG: 00040+2.7.7.9;KEGG: 00520+2.7.7.9;KEGG: 00561+2.7.7.9	"Galactose metabolism";"Starch and sucrose metabolism";"Sucrose degradation II (sucrose synthase)";"UDP-alpha-D-glucose biosynthesis I";"Stachyose degradation";"Formation of the active cofactor, UDP-glucuronate";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Sucrose biosynthesis II";"Glycogen synthesis";"Pentose and glucuronate interconversions";"Amino sugar and nucleotide sugar metabolism";"Glycerolipid metabolism"
JAMg_model_1474.2	4	Reactome: R-HSA-3899300;Reactome: R-HSA-9615710;Reactome: R-HSA-9613829;Reactome: R-HSA-9646399	"SUMOylation of transcription cofactors";"Late endosomal microautophagy";"Chaperone Mediated Autophagy";"Aggrephagy"
JAMg_model_1216.5	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_14726.1	1	Reactome: R-HSA-193648	"NRAGE signals death through JNK"
JAMg_model_4742.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_10940.1	1	Reactome: R-HSA-389661	"Glyoxylate metabolism and glycine degradation"
JAMg_model_11406.1	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_7791.3	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_10909.1	1	Reactome: R-HSA-211897	"Cytochrome P450 - arranged by substrate type"
JAMg_model_9798.1	3	Reactome: R-HSA-749476;Reactome: R-HSA-76061;Reactome: R-HSA-76066	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_3663.1	5	KEGG: 00983+2.7.1.21;Reactome: R-HSA-69205;MetaCyc: PWY-7199;KEGG: 00240+2.7.1.21;Reactome: R-HSA-73614	"Drug metabolism - other enzymes";"G1/S-Specific Transcription";"Pyrimidine deoxyribonucleosides salvage";"Pyrimidine metabolism";"Pyrimidine salvage"
JAMg_model_2002.3	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_8940.2	5	Reactome: R-HSA-380994;Reactome: R-HSA-8963693;Reactome: R-HSA-9633012;KEGG: 00250+6.3.5.4;Reactome: R-HSA-9648895	"ATF4 activates genes in response to endoplasmic reticulum stress";"Aspartate and asparagine metabolism";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Alanine, aspartate and glutamate metabolism";"Response of EIF2AK1 (HRI) to heme deficiency"
JAMg_model_15332.1	3	KEGG: 00511+3.2.1.45;KEGG: 00600+3.2.1.45;Reactome: R-HSA-1660662	"Other glycan degradation";"Sphingolipid metabolism";"Glycosphingolipid metabolism"
JAMg_model_17316.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_11648.1	5	Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556	"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes"
JAMg_model_4840.1	10	Reactome: R-HSA-3899300;Reactome: R-HSA-8936459;Reactome: R-HSA-9615017;Reactome: R-HSA-400206;Reactome: R-HSA-9022692;Reactome: R-HSA-9022538;Reactome: R-HSA-427413;Reactome: R-HSA-9022699;Reactome: R-HSA-9022702;Reactome: R-HSA-983231	"SUMOylation of transcription cofactors";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Regulation of lipid metabolism by PPARalpha";"Regulation of MECP2 expression and activity";"Loss of MECP2 binding ability to 5mC-DNA";"NoRC negatively regulates rRNA expression";"MECP2 regulates neuronal receptors and channels";"MECP2 regulates transcription of neuronal ligands";"Factors involved in megakaryocyte development and platelet production"
JAMg_model_3713.1	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_8481.5	2	Reactome: R-HSA-203927;Reactome: R-HSA-8986944	"MicroRNA (miRNA) biogenesis";"Transcriptional Regulation by MECP2"
JAMg_model_18681.4	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_15514.1	13	Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339	"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_2598.1	1	Reactome: R-HSA-4615885	"SUMOylation of DNA replication proteins"
JAMg_model_19503.1	58	KEGG: 00623+1.1.1.35;MetaCyc: PWY-1361;KEGG: 00640+4.2.1.17;KEGG: 00281+4.2.1.17+1.1.1.35;KEGG: 00310+4.2.1.17;MetaCyc: PWY-7216;KEGG: 00720+4.2.1.17+1.1.1.35;KEGG: 00930+4.2.1.17+1.1.1.35;KEGG: 00071+4.2.1.17+1.1.1.211;KEGG: 00930+4.2.1.17;MetaCyc: PWY-7606;MetaCyc: PWY-7779;Reactome: R-HSA-77305;MetaCyc: PWY-6863;MetaCyc: PWY-6946;MetaCyc: PWY-7094;Reactome: R-HSA-77288;KEGG: 00280+4.2.1.17;MetaCyc: PWY-7654;MetaCyc: PWY-5136;Reactome: R-HSA-77310;KEGG: 00062+4.2.1.17+1.1.1.211;KEGG: 00720+4.2.1.17;KEGG: 00062+4.2.1.17+1.1.1.35;MetaCyc: PWY-7778;MetaCyc: PWY-6435;KEGG: 00650+4.2.1.17+1.1.1.35;MetaCyc: PWY-6945;KEGG: 00903+4.2.1.17;MetaCyc: PWY-6944;KEGG: 00650+4.2.1.17;Reactome: R-HSA-77348;KEGG: 00362+4.2.1.17+1.1.1.35;KEGG: 00380+4.2.1.17;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-7007;Reactome: R-HSA-77285;Reactome: R-HSA-77350;MetaCyc: PWY-5109;KEGG: 00592+4.2.1.17;MetaCyc: PWY-7401;MetaCyc: PWY-7726;KEGG: 00071+4.2.1.17+1.1.1.35;MetaCyc: PWY-7656;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-6883;KEGG: 00310+4.2.1.17+1.1.1.35;MetaCyc: PWY-5789;KEGG: 00362+4.2.1.17;KEGG: 00360+4.2.1.17;MetaCyc: PWY-5138;MetaCyc: PWY-5177;MetaCyc: PWY-6583;Reactome: R-HSA-77346;KEGG: 00410+4.2.1.17;KEGG: 00627+4.2.1.17;Reactome: R-HSA-1482798;KEGG: 00281+4.2.1.17	"Toluene degradation";"Benzoyl-coa degradation I (aerobic)";"Propanoate metabolism";"Geraniol degradation";"Lysine degradation";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Carbon fixation pathways in prokaryotes";"Caprolactam degradation";"Fatty acid degradation";"Caprolactam degradation";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Methyl tert-butyl ether degradation";"Beta oxidation of palmitoyl-CoA to myristoyl-CoA";"Pyruvate fermentation to hexanol (engineered)";"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Fatty acid salvage";"mitochondrial fatty acid beta-oxidation of unsaturated fatty acids";"Valine, leucine and isoleucine degradation";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Fatty acid beta-oxidation II (plant peroxisome)";"Beta oxidation of lauroyl-CoA to decanoyl-CoA-CoA";"Fatty acid elongation";"Carbon fixation pathways in prokaryotes";"Fatty acid elongation";"2-methylpropene degradation";"4-hydroxybenzoate biosynthesis III (plants)";"Butanoate metabolism";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"Limonene and pinene degradation";"Androstenedione degradation";"Butanoate metabolism";"Beta oxidation of octanoyl-CoA to hexanoyl-CoA";"Benzoate degradation";"Tryptophan metabolism";"Tryptophan metabolism";"Methyl ketone biosynthesis (engineered)";"Beta oxidation of myristoyl-CoA to lauroyl-CoA";"Beta oxidation of hexanoyl-CoA to butanoyl-CoA";"Fermentation to 2-methylbutanoate";"alpha-Linolenic acid metabolism";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Fatty acid degradation";"Spodoptera littoralis pheromone biosynthesis";"Valine, leucine and isoleucine degradation";"Pyruvate fermentation to butanol II (engineered)";"Lysine degradation";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Benzoate degradation";"Phenylalanine metabolism";"Fatty acid beta-oxidation IV (unsaturated, even number)";"Glutaryl-coa degradation";"Pyruvate fermentation to butanol I";"Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA";"beta-Alanine metabolism";"Aminobenzoate degradation";"Acyl chain remodeling of CL";"Geraniol degradation"
JAMg_model_16528.4	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_9136.1	1	Reactome: R-HSA-1221632	"Meiotic synapsis"
JAMg_model_6704.1	4	Reactome: R-HSA-202433;Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-2393930	"Generation of second messenger molecules";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"Phosphate bond hydrolysis by NUDT proteins"
JAMg_model_21121.1	1	Reactome: R-HSA-1445148	"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_8557.1	1	MetaCyc: PWY-7799	"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_21355.2	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_18815.1	7	Reactome: R-HSA-2500257;Reactome: R-HSA-606279;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-2467813	"Resolution of Sister Chromatid Cohesion";"Deposition of new CENPA-containing nucleosomes at the centromere";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Separation of Sister Chromatids"
JAMg_model_19470.1	2	Reactome: R-HSA-2151201;KEGG: 00970+6.1.1.14	"Transcriptional activation of mitochondrial biogenesis";"Aminoacyl-tRNA biosynthesis"
JAMg_model_5913.1	2	Reactome: R-HSA-5576893;Reactome: R-HSA-5576892	"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation"
JAMg_model_5588.7	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_15621.4	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_7339.1	1	Reactome: R-HSA-5617472	"Activation of anterior HOX genes in hindbrain development during early embryogenesis"
JAMg_model_7934.1	1	Reactome: R-HSA-5658442	"Regulation of RAS by GAPs"
JAMg_model_7521.1	2	Reactome: R-HSA-5693554;Reactome: R-HSA-2564830	"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Cytosolic iron-sulfur cluster assembly"
JAMg_model_19162.4	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_11689.3	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_559.2	16	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012	"Peptide chain elongation";"Viral mRNA Translation";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_5561.2	5	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-77387;Reactome: R-HSA-917977	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Ion channel transport";"Insulin receptor recycling";"Transferrin endocytosis and recycling"
JAMg_model_12392.2	1	KEGG: 00970+6.1.1.20	"Aminoacyl-tRNA biosynthesis"
JAMg_model_7423.1	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_18418.1	3	Reactome: R-HSA-191859;Reactome: R-HSA-72163;Reactome: R-HSA-72165	"snRNP Assembly";"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_2182.2	4	Reactome: R-HSA-350054;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947	"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription"
JAMg_model_7844.1	6	MetaCyc: PWY-6368;KEGG: 04070+3.1.3.64+3.1.3.95;KEGG: 00562+3.1.3.64+3.1.3.95;MetaCyc: PWY-6580;MetaCyc: PWY-6367;Reactome: R-HSA-1660499	"3-phosphoinositide degradation";"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"Phosphatidylinositol biosynthesis I (bacteria)";"D-myo-inositol-5-phosphate metabolism";"Synthesis of PIPs at the plasma membrane"
JAMg_model_8880.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_3507.1	4	Reactome: R-HSA-6807878;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-6811436	"COPI-mediated anterograde transport";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_6456.2	22	KEGG: 00520+5.3.1.9;MetaCyc: PWY-7238;Reactome: R-HSA-6798695;MetaCyc: PWY-622;MetaCyc: PWY-6981;MetaCyc: PWY-5514;Reactome: R-HSA-5628897;MetaCyc: PWY-6142;MetaCyc: PWY-7347;MetaCyc: PWY-5054;KEGG: 00010+5.3.1.9;MetaCyc: PWY-621;Reactome: R-HSA-70263;MetaCyc: PWY-7385;MetaCyc: PWY-5659;KEGG: 00030+5.3.1.9;MetaCyc: PWY-3801;KEGG: 00500+5.3.1.9;MetaCyc: PWY-6992;MetaCyc: PWY-8013;MetaCyc: PWY-5384;Reactome: R-HSA-70171	"Amino sugar and nucleotide sugar metabolism";"Sucrose biosynthesis II";"Neutrophil degranulation";"Starch biosynthesis";"Chitin biosynthesis";"UDP-N-acetyl-D-galactosamine biosynthesis II";"TP53 Regulates Metabolic Genes";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Sucrose biosynthesis III";"D-sorbitol biosynthesis I";"Glycolysis / Gluconeogenesis";"Sucrose degradation III (sucrose invertase)";"Gluconeogenesis";"1,3-propanediol biosynthesis (engineered)";"GDP-mannose biosynthesis";"Pentose phosphate pathway";"Sucrose degradation II (sucrose synthase)";"Starch and sucrose metabolism";"1,5-anhydrofructose degradation";"UDP-N-acetyl-D-galactosamine biosynthesis III";"Sucrose degradation IV (sucrose phosphorylase)";"Glycolysis"
JAMg_model_20859.1	13	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_8477.4	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_671.3	6	Reactome: R-HSA-176187;Reactome: R-HSA-5685938;Reactome: R-HSA-5693607;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-6804756	"Activation of ATR in response to replication stress";"HDR through Single Strand Annealing (SSA)";"Processing of DNA double-strand break ends";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_8010.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_19360.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_11252.8	9	MetaCyc: PWY-5667;MetaCyc: PWY-7902;MetaCyc: PWY-6118;MetaCyc: PWY-5981;KEGG: 00564+1.1.1.94;KEGG: 00564+1.1.1.8;MetaCyc: PWY-7385;MetaCyc: PWY-7411;Reactome: R-HSA-1483166	"CDP-diacylglycerol biosynthesis I";"Glucosylglycerol biosynthesis";"Glycerol-3-phosphate shuttle";"CDP-diacylglycerol biosynthesis III";"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"1,3-propanediol biosynthesis (engineered)";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA"
JAMg_model_12780.1	2	Reactome: R-HSA-427413;Reactome: R-HSA-3214815	"NoRC negatively regulates rRNA expression";"HDACs deacetylate histones"
JAMg_model_12731.1	7	KEGG: 04150+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"Human cytomegalovirus infection";"PI3K-Akt signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection"
JAMg_model_14597.1	3	Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-425561	"Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Sodium/Calcium exchangers"
JAMg_model_7472.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_197.3	29	Reactome: R-HSA-77075;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-167162;Reactome: R-HSA-167158;Reactome: R-HSA-167172;Reactome: R-HSA-113418;Reactome: R-HSA-167246;Reactome: R-HSA-73863;Reactome: R-HSA-76042;Reactome: R-HSA-6781823;Reactome: R-HSA-72086;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-73772;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-5696400;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-73762;Reactome: R-HSA-6796648;Reactome: R-HSA-5696395;Reactome: R-HSA-167200;Reactome: R-HSA-75953;Reactome: R-HSA-112382	"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II HIV Promoter Escape";"Formation of the HIV-1 Early Elongation Complex";"Transcription of the HIV genome";"Formation of the Early Elongation Complex";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase I Transcription Termination";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of TC-NER Pre-Incision Complex";"mRNA Capping";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"Dual Incision in GG-NER";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"RNA Polymerase I Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of Incision Complex in GG-NER";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Transcription Initiation";"Formation of RNA Pol II elongation complex"
JAMg_model_12540.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_3208.1	5	Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-77595;Reactome: R-HSA-159231;Reactome: R-HSA-73856	"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"Processing of Intronless Pre-mRNAs";"Transport of Mature mRNA Derived from an Intronless Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_15927.1	2	Reactome: R-HSA-8873719;Reactome: R-HSA-8875656	"RAB geranylgeranylation";"MET receptor recycling"
JAMg_model_15453.1	5	Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556	"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes"
JAMg_model_1778.1	2	KEGG: 00511+3.2.1.96;Reactome: R-HSA-532668	"Other glycan degradation";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle"
JAMg_model_21047.2	2	Reactome: R-HSA-6807505;Reactome: R-HSA-72163	"RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway"
JAMg_model_15621.1	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_20489.1	11	Reactome: R-HSA-5213460;Reactome: R-HSA-5357786;Reactome: R-HSA-75158;Reactome: R-HSA-2562578;Reactome: R-HSA-933543;Reactome: R-HSA-69416;Reactome: R-HSA-75157;Reactome: R-HSA-140534;Reactome: R-HSA-9013957;Reactome: R-HSA-3371378;Reactome: R-HSA-5218900	"RIPK1-mediated regulated necrosis";"TNFR1-induced proapoptotic signaling";"TRAIL signaling";"TRIF-mediated programmed cell death";"NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10";"Dimerization of procaspase-8";"FasL/ CD95L signaling";"Caspase activation via Death Receptors in the presence of ligand";"TLR3-mediated TICAM1-dependent programmed cell death";"Regulation by c-FLIP";"CASP8 activity is inhibited"
JAMg_model_15277.5	10	MetaCyc: PWY-5497;MetaCyc: PWY-2201;KEGG: 00720+1.5.1.5+3.5.4.9;KEGG: 00670+1.5.1.5+3.5.4.9;MetaCyc: PWY-1722;MetaCyc: PWY-5030;Reactome: R-HSA-196757;MetaCyc: PWY-3841;MetaCyc: PWY-7909;MetaCyc: PWY-6613	"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"Carbon fixation pathways in prokaryotes";"One carbon pool by folate";"Formate assimilation into 5,10-methylenetetrahydrofolate";"L-histidine degradation III";"Metabolism of folate and pterines";"Folate transformations II (plants)";"Formaldehyde oxidation VII (THF pathway)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate"
JAMg_model_16353.1	2	Reactome: R-HSA-2022854;Reactome: R-HSA-975577	"Keratan sulfate biosynthesis";"N-Glycan antennae elongation"
JAMg_model_8361.2	1	Reactome: R-HSA-5223345	"Miscellaneous transport and binding events"
JAMg_model_17419.4	12	Reactome: R-HSA-2565942;Reactome: R-HSA-3371497;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-381038;Reactome: R-HSA-6807878;Reactome: R-HSA-8854518;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-2132295;Reactome: R-HSA-5620912;Reactome: R-HSA-6811436	"Regulation of PLK1 Activity at G2/M Transition";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"XBP1(S) activates chaperone genes";"COPI-mediated anterograde transport";"AURKA Activation by TPX2";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"MHC class II antigen presentation";"Anchoring of the basal body to the plasma membrane";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_20929.2	6	Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-2500257	"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Resolution of Sister Chromatid Cohesion"
JAMg_model_12523.1	3	KEGG: 00270+1.13.11.54;MetaCyc: PWY-4361;Reactome: R-HSA-1237112	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Methionine salvage pathway"
JAMg_model_16223.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_3003.1	52	Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4641257;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-9010553;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-4641258;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-174154;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128	"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Degradation of AXIN";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Regulation of expression of SLITs and ROBOs";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Degradation of DVL";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"APC/C:Cdc20 mediated degradation of Securin";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling"
JAMg_model_8477.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_17419.6	12	Reactome: R-HSA-381038;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-3371497;Reactome: R-HSA-2565942;Reactome: R-HSA-6811436;Reactome: R-HSA-5620912;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-2132295;Reactome: R-HSA-8854518;Reactome: R-HSA-6807878	"XBP1(S) activates chaperone genes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Regulation of PLK1 Activity at G2/M Transition";"COPI-independent Golgi-to-ER retrograde traffic";"Anchoring of the basal body to the plasma membrane";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"MHC class II antigen presentation";"AURKA Activation by TPX2";"COPI-mediated anterograde transport"
JAMg_model_17269.2	3	MetaCyc: PWY-8106;Reactome: R-HSA-6782315;MetaCyc: PWY-6700	"Queuosine biosynthesis III (queuosine salvage)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis I (de novo)"
JAMg_model_16517.1	1	Reactome: R-HSA-196783	"Coenzyme A biosynthesis"
JAMg_model_1460.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_15311.3	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_15099.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_11895.1	5	KEGG: 00860+4.1.1.37;MetaCyc: PWY-5531;Reactome: R-HSA-189451;MetaCyc: PWY-7766;MetaCyc: PWY-7159	"Porphyrin and chlorophyll metabolism";"3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)";"Heme biosynthesis";"Heme b biosynthesis IV (Gram-positive bacteria)";"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)"
JAMg_model_5765.1	6	Reactome: R-HSA-5389840;Reactome: R-HSA-4085001;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286;KEGG: 00540+2.7.7.38;MetaCyc: PWY-1269	"Mitochondrial translation elongation";"Sialic acid metabolism";"Mitochondrial translation termination";"Mitochondrial translation initiation";"Lipopolysaccharide biosynthesis";"CMP-3-deoxy-D-manno-octulosonate biosynthesis"
JAMg_model_6031.1	8	Reactome: R-HSA-5358565;Reactome: R-HSA-983189;Reactome: R-HSA-6796648;Reactome: R-HSA-5545483;Reactome: R-HSA-912446;Reactome: R-HSA-6811434;Reactome: R-HSA-5632987;Reactome: R-HSA-5358606	"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Kinesins";"TP53 Regulates Transcription of DNA Repair Genes";"Defective Mismatch Repair Associated With MLH1";"Meiotic recombination";"COPI-dependent Golgi-to-ER retrograde traffic";"Defective Mismatch Repair Associated With PMS2";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)"
JAMg_model_8897.4	3	Reactome: R-HSA-1268020;Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Mitochondrial protein import";"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_13435.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_11740.3	9	Reactome: R-HSA-69183;Reactome: R-HSA-113501;Reactome: R-HSA-68962;Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-68952;Reactome: R-HSA-174411;Reactome: R-HSA-6784531;Reactome: R-HSA-174430	"Processive synthesis on the lagging strand";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Activation of the pre-replicative complex";"Removal of the Flap Intermediate";"Polymerase switching";"DNA replication initiation";"Polymerase switching on the C-strand of the telomere";"tRNA processing in the nucleus";"Telomere C-strand synthesis initiation"
JAMg_model_11294.1	6	Reactome: R-HSA-6791226;Reactome: R-HSA-450513;Reactome: R-HSA-380994;Reactome: R-HSA-450385;Reactome: R-HSA-450604;Reactome: R-HSA-429958	"Major pathway of rRNA processing in the nucleolus and cytosol";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_1614.1	2	Reactome: R-HSA-195253;Reactome: R-HSA-5689896	"Degradation of beta-catenin by the destruction complex";"Ovarian tumor domain proteases"
JAMg_model_21252.3	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_19116.4	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11705.3	6	MetaCyc: PWY-7234;KEGG: 00230+4.1.1.21;Reactome: R-HSA-73817;KEGG: 00230+6.3.2.6;MetaCyc: PWY-6123;MetaCyc: PWY-6124	"Inosine-5'-phosphate biosynthesis III";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Inosine-5'-phosphate biosynthesis I";"Inosine-5'-phosphate biosynthesis II"
JAMg_model_18821.1	1	Reactome: R-HSA-5658442	"Regulation of RAS by GAPs"
JAMg_model_13380.3	2	Reactome: R-HSA-877300;Reactome: R-HSA-2132295	"Interferon gamma signaling";"MHC class II antigen presentation"
JAMg_model_15492.1	2	KEGG: 04070+2.7.11.13;Reactome: R-HSA-5625740	"Phosphatidylinositol signaling system";"RHO GTPases activate PKNs"
JAMg_model_20576.1	3	Reactome: R-HSA-5620916;Reactome: R-HSA-1445148;Reactome: R-HSA-264876	"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing"
JAMg_model_5221.1	6	Reactome: R-HSA-9010553;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-975957;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"Regulation of expression of SLITs and ROBOs";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_14920.1	8	KEGG: 05163+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1	"Human cytomegalovirus infection";"Signaling by Hippo";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway"
JAMg_model_20236.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_20861.1	6	Reactome: R-HSA-110373;Reactome: R-HSA-73933;Reactome: R-HSA-5651801;Reactome: R-HSA-73930;Reactome: R-HSA-110357;Reactome: R-HSA-110362	"Resolution of AP sites via the multiple-nucleotide patch replacement pathway";"Resolution of Abasic Sites (AP sites)";"PCNA-Dependent Long Patch Base Excision Repair";"Abasic sugar-phosphate removal via the single-nucleotide replacement pathway";"Displacement of DNA glycosylase by APEX1";"POLB-Dependent Long Patch Base Excision Repair"
JAMg_model_4539.3	1	Reactome: R-HSA-430039	"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_20894.1	10	Reactome: R-HSA-2206292;Reactome: R-HSA-2024096;MetaCyc: PWY-6807;Reactome: R-HSA-2160916;KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00511+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00052+3.2.1.23	"MPS VII - Sly syndrome";"HS-GAG degradation";"Xyloglucan degradation II (exoglucanase)";"Hyaluronan uptake and degradation";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Other glycan degradation";"Neutrophil degranulation";"Galactose metabolism"
JAMg_model_11069.1	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_21270.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8210.1	6	Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72695	"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex"
JAMg_model_18117.8	12	KEGG: 00380+2.6.1.7;MetaCyc: PWY-601;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6309;MetaCyc: PWY-6936;MetaCyc: PWY-1187;KEGG: 00270+4.4.1.13;Reactome: R-HSA-71240;MetaCyc: PWY-801;MetaCyc: PWY-7901;MetaCyc: PWY-2821;MetaCyc: PWY-6842	"Tryptophan metabolism";"Glucosinolate biosynthesis from tryptophan";"Selenocompound metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Seleno-amino acid biosynthesis (plants)";"Glucosinolate biosynthesis from homomethionine";"Cysteine and methionine metabolism";"Tryptophan catabolism";"Homocysteine and cysteine interconversion";"Glucosinolate biosynthesis from tyrosine";"Glucosinolate biosynthesis from phenylalanine";"Glutathione-mediated detoxification II"
JAMg_model_11737.1	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_6817.1	1	Reactome: R-HSA-176974	"Unwinding of DNA"
JAMg_model_13316.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_1706.2	3	Reactome: R-HSA-110312;Reactome: R-HSA-5655862;Reactome: R-HSA-5656121	"Translesion synthesis by REV1";"Translesion synthesis by POLK";"Translesion synthesis by POLI"
JAMg_model_1629.3	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_17319.2	3	Reactome: R-HSA-73856;Reactome: R-HSA-159236;Reactome: R-HSA-72187	"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"mRNA 3'-end processing"
JAMg_model_16891.1	1	Reactome: R-HSA-74217	"Purine salvage"
JAMg_model_405.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-445095	"Phase 0 - rapid depolarisation";"Interaction between L1 and Ankyrins"
JAMg_model_17161.5	5	MetaCyc: PWY-6317;KEGG: 00520+2.7.1.6;MetaCyc: PWY-3821;KEGG: 00052+2.7.1.6;MetaCyc: PWY-6527	"D-galactose degradation I (Leloir pathway)";"Amino sugar and nucleotide sugar metabolism";"D-galactose detoxification";"Galactose metabolism";"Stachyose degradation"
JAMg_model_11665.1	1	Reactome: R-HSA-2514853	"Condensation of Prometaphase Chromosomes"
JAMg_model_14821.2	2	Reactome: R-HSA-429947;Reactome: R-HSA-6804115	"Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain"
JAMg_model_17627.1	2	Reactome: R-HSA-6787450;Reactome: R-HSA-6782315	"tRNA modification in the mitochondrion";"tRNA modification in the nucleus and cytosol"
JAMg_model_9684.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_8453.1	3	Reactome: R-HSA-264876;Reactome: R-HSA-1445148;Reactome: R-HSA-5620916	"Insulin processing";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"VxPx cargo-targeting to cilium"
JAMg_model_7286.1	43	Reactome: R-HSA-8854518;Reactome: R-HSA-5467340;Reactome: R-HSA-163685;Reactome: R-HSA-5620912;Reactome: R-HSA-196299;Reactome: R-HSA-2565942;Reactome: R-HSA-195253;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-380270;Reactome: R-HSA-432142;Reactome: R-HSA-2995383;Reactome: R-HSA-5358747;Reactome: R-HSA-69273;Reactome: R-HSA-4641262;Reactome: R-HSA-380320;Reactome: R-HSA-202670;Reactome: R-HSA-5675221;Reactome: R-HSA-5467337;Reactome: R-HSA-68877;Reactome: R-HSA-5358752;Reactome: R-HSA-380284;Reactome: R-HSA-180024;Reactome: R-HSA-5467348;Reactome: R-HSA-389513;Reactome: R-HSA-69231;Reactome: R-HSA-975957;Reactome: R-HSA-5673000;Reactome: R-HSA-6811558;Reactome: R-HSA-5339716;Reactome: R-HSA-9634600;Reactome: R-HSA-1295596;Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-5358751;Reactome: R-HSA-2465910;Reactome: R-HSA-380259;Reactome: R-HSA-2500257;Reactome: R-HSA-6804757;Reactome: R-HSA-198753;Reactome: R-HSA-5358749;Reactome: R-HSA-113501;Reactome: R-HSA-163767	"AURKA Activation by TPX2";"AXIN missense mutants destabilize the destruction complex";"Integration of energy metabolism";"Anchoring of the basal body to the plasma membrane";"Beta-catenin phosphorylation cascade";"Regulation of PLK1 Activity at G2/M Transition";"Degradation of beta-catenin by the destruction complex";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Recruitment of mitotic centrosome proteins and complexes";"Platelet sensitization by LDL";"Initiation of Nuclear Envelope Reformation";"S33 mutants of beta-catenin aren't phosphorylated";"Cyclin A/B1/B2 associated events during G2/M transition";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"Recruitment of NuMA to mitotic centrosomes";"ERKs are inactivated";"Negative regulation of MAPK pathway";"APC truncation mutants have impaired AXIN binding";"Mitotic Prometaphase";"T41 mutants of beta-catenin aren't phosphorylated";"Loss of proteins required for interphase microtubule organization from the centrosome";"DARPP-32 events";"Truncations of AMER1 destabilize the destruction complex";"CTLA4 inhibitory signaling";"Cyclin D associated events in G1";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"RAF activation";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Misspliced GSK3beta mutants stabilize beta-catenin";"Regulation of glycolysis by fructose 2,6-bisphosphate metabolism";"Spry regulation of FGF signaling";"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"S45 mutants of beta-catenin aren't phosphorylated";"MASTL Facilitates Mitotic Progression";"Loss of Nlp from mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"Regulation of TP53 Degradation";"ERK/MAPK targets";"S37 mutants of beta-catenin aren't phosphorylated";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"PP2A-mediated dephosphorylation of key metabolic factors"
JAMg_model_4351.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_5088.3	16	MetaCyc: PWY-1042;MetaCyc: PWY-6901;MetaCyc: PWY-7124;MetaCyc: PWY-7218;MetaCyc: PWY-2221;MetaCyc: PWY-6142;KEGG: 00010+4.2.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-1622;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-5723;Reactome: R-HSA-70263;Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00680+4.2.1.11	"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Ethylene biosynthesis V (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Rubisco shunt";"Gluconeogenesis";"Glycolysis";"Glycerol degradation to butanol";"Methane metabolism"
JAMg_model_5433.2	4	Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712;Reactome: R-HSA-1222556	"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport";"ROS and RNS production in phagocytes"
JAMg_model_4828.5	3	Reactome: R-HSA-525793;Reactome: R-HSA-5663220;Reactome: R-HSA-9634638	"Myogenesis";"RHO GTPases Activate Formins";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling"
JAMg_model_17580.4	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_1845.1	3	MetaCyc: PWY-7942;Reactome: R-HSA-174403;KEGG: 00480+4.3.2.7	"5-oxo-L-proline metabolism";"Glutathione synthesis and recycling";"Glutathione metabolism"
JAMg_model_5266.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_13658.2	3	MetaCyc: PWY-7999;KEGG: 00130+1.17.4.4;Reactome: R-HSA-6806664	"Vitamin K-epoxide cycle";"Ubiquinone and other terpenoid-quinone biosynthesis";"Metabolism of vitamin K"
JAMg_model_20656.1	24	Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-983189;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"Kinesins";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"HCMV Early Events";"Mitotic Prometaphase";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_6562.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_10598.4	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5689880	"UCH proteinases";"Ub-specific processing proteases"
JAMg_model_16589.4	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_4027.1	6	Reactome: R-HSA-264642;Reactome: R-HSA-181429;Reactome: R-HSA-181430;Reactome: R-HSA-388844;Reactome: R-HSA-210500;Reactome: R-HSA-212676	"Acetylcholine Neurotransmitter Release Cycle";"Serotonin Neurotransmitter Release Cycle";"Norepinephrine Neurotransmitter Release Cycle";"Receptor-type tyrosine-protein phosphatases";"Glutamate Neurotransmitter Release Cycle";"Dopamine Neurotransmitter Release Cycle"
JAMg_model_10401.2	3	Reactome: R-HSA-5696395;Reactome: R-HSA-5696394;Reactome: R-HSA-5689877	"Formation of Incision Complex in GG-NER";"DNA Damage Recognition in GG-NER";"Josephin domain DUBs"
JAMg_model_4807.2	4	Reactome: R-HSA-8951664;Reactome: R-HSA-6781823;Reactome: R-HSA-5696394;Reactome: R-HSA-8856825	"Neddylation";"Formation of TC-NER Pre-Incision Complex";"DNA Damage Recognition in GG-NER";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_13545.2	1	Reactome: R-HSA-381753	"Olfactory Signaling Pathway"
JAMg_model_8435.3	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_8210.3	6	Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-72695	"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex"
JAMg_model_6324.5	10	KEGG: 00561+2.3.1.15;KEGG: 00564+2.3.1.15;Reactome: R-HSA-1483166;MetaCyc: PWY-8055;MetaCyc: PWY-7411;MetaCyc: PWY-6453;MetaCyc: PWY-7587;MetaCyc: PWY-8051;MetaCyc: PWY-5667;MetaCyc: PWY-8053	"Glycerolipid metabolism";"Glycerophospholipid metabolism";"Synthesis of PA";"Palmitoyl ethanolamide biosynthesis";"Phosphatidate biosynthesis (yeast)";"Stigma estolide biosynthesis";"Oleate biosynthesis III (cyanobacteria)";"Anandamide biosynthesis I";"CDP-diacylglycerol biosynthesis I";"Anandamide biosynthesis II"
JAMg_model_6097.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_1964.3	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_16071.2	9	Reactome: R-HSA-6802946;Reactome: R-HSA-6802952;Reactome: R-HSA-114608;Reactome: R-HSA-6802955;Reactome: R-HSA-6798695;Reactome: R-HSA-445355;Reactome: R-HSA-6802948;Reactome: R-HSA-5674135;Reactome: R-HSA-9649948	"Signaling by moderate kinase activity BRAF mutants";"Signaling by BRAF and RAF fusions";"Platelet degranulation";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Neutrophil degranulation";"Smooth Muscle Contraction";"Signaling by high-kinase activity BRAF mutants";"MAP2K and MAPK activation";"Signaling downstream of RAS mutants"
JAMg_model_7772.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_20854.1	3	Reactome: R-HSA-196807;Reactome: R-HSA-73621;Reactome: R-HSA-74259	"Nicotinate metabolism";"Pyrimidine catabolism";"Purine catabolism"
JAMg_model_17000.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_4469.1	33	Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-1169408;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333;Reactome: R-HSA-168276;Reactome: R-HSA-159227;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-4551638;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-3232142;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-4570464;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-68877;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-170822;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-5663220;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-159236	"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"ISG15 antiviral mechanism";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery";"NS1 Mediated Effects on Host Pathways";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"SUMOylation of chromatin organization proteins";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of ubiquitinylation proteins";"snRNP Assembly";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of RNA binding proteins";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"Mitotic Prometaphase";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"RHO GTPases Activate Formins";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_16329.1	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_12899.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_20787.7	32	Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-73776;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-9018519;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-75955;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-77075	"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Estrogen-dependent gene expression";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Elongation";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE"
JAMg_model_218.2	1	Reactome: R-HSA-73621	"Pyrimidine catabolism"
JAMg_model_10139.1	2	Reactome: R-HSA-416476;Reactome: R-HSA-388479	"G alpha (q) signalling events";"Vasopressin-like receptors"
JAMg_model_11689.2	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_1687.1	16	Reactome: R-HSA-174178;Reactome: R-HSA-8853884;Reactome: R-HSA-176408;Reactome: R-HSA-2467813;Reactome: R-HSA-174154;Reactome: R-HSA-983168;Reactome: R-HSA-179409;Reactome: R-HSA-141430;Reactome: R-HSA-2559582;Reactome: R-HSA-69017;Reactome: R-HSA-176412;Reactome: R-HSA-174184;Reactome: R-HSA-176409;Reactome: R-HSA-174048;Reactome: R-HSA-176407;Reactome: R-HSA-174084	"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Transcriptional Regulation by VENTX";"Regulation of APC/C activators between G1/S and early anaphase";"Separation of Sister Chromatids";"APC/C:Cdc20 mediated degradation of Securin";"Antigen processing: Ubiquitination & Proteasome degradation";"APC-Cdc20 mediated degradation of Nek2A";"Inactivation of APC/C via direct inhibition of the APC/C complex";"Senescence-Associated Secretory Phenotype (SASP)";"CDK-mediated phosphorylation and removal of Cdc6";"Phosphorylation of the APC/C";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"APC/C:Cdc20 mediated degradation of mitotic proteins";"APC/C:Cdc20 mediated degradation of Cyclin B";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"Autodegradation of Cdh1 by Cdh1:APC/C"
JAMg_model_18312.2	29	Reactome: R-HSA-5696397;Reactome: R-HSA-5358565;Reactome: R-HSA-5358606;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-174437;Reactome: R-HSA-68962;Reactome: R-HSA-176187;Reactome: R-HSA-69166;Reactome: R-HSA-6782210;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-3371453;Reactome: R-HSA-5696395;Reactome: R-HSA-5685938;Reactome: R-HSA-3371511;Reactome: R-HSA-3108214;Reactome: R-HSA-912446;Reactome: R-HSA-5655862;Reactome: R-HSA-6783310;Reactome: R-HSA-6782135;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-110314;Reactome: R-HSA-6804756	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Removal of the Flap Intermediate from the C-strand";"Activation of the pre-replicative complex";"Activation of ATR in response to replication stress";"Removal of the Flap Intermediate";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Regulation of HSF1-mediated heat shock response";"Formation of Incision Complex in GG-NER";"HDR through Single Strand Annealing (SSA)";"HSF1 activation";"SUMOylation of DNA damage response and repair proteins";"Meiotic recombination";"Translesion synthesis by POLK";"Fanconi Anemia Pathway";"Dual incision in TC-NER";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_13242.1	7	KEGG: 00471+3.5.1.2;KEGG: 00220+3.5.1.2;MetaCyc: PWY-5921;Reactome: R-HSA-210500;Reactome: R-HSA-5628897;KEGG: 00250+3.5.1.2;Reactome: R-HSA-8964539	"D-Glutamine and D-glutamate metabolism";"Arginine biosynthesis";"Glutaminyl-trnagln biosynthesis via transamidation";"Glutamate Neurotransmitter Release Cycle";"TP53 Regulates Metabolic Genes";"Alanine, aspartate and glutamate metabolism";"Glutamate and glutamine metabolism"
JAMg_model_3523.1	1	MetaCyc: PWY-6308	"L-cysteine biosynthesis II (tRNA-dependent)"
JAMg_model_10328.3	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_8631.1	2	Reactome: R-HSA-6783310;Reactome: R-HSA-6796648	"Fanconi Anemia Pathway";"TP53 Regulates Transcription of DNA Repair Genes"
JAMg_model_3411.1	1	Reactome: R-HSA-977347	"Serine biosynthesis"
JAMg_model_15951.1	1	Reactome: R-HSA-204626	"Hypusine synthesis from eIF5A-lysine"
JAMg_model_7521.2	2	Reactome: R-HSA-5693554;Reactome: R-HSA-2564830	"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Cytosolic iron-sulfur cluster assembly"
JAMg_model_3870.2	2	Reactome: R-HSA-3065676;Reactome: R-HSA-3065678	"SUMO is conjugated to E1 (UBA2:SAE1)";"SUMO is transferred from E1 to E2 (UBE2I, UBC9)"
JAMg_model_1475.2	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_17959.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_13411.1	4	Reactome: R-HSA-912631;Reactome: R-HSA-8875555;Reactome: R-HSA-186763;Reactome: R-HSA-8875656	"Regulation of signaling by CBL";"MET activates RAP1 and RAC1";"Downstream signal transduction";"MET receptor recycling"
JAMg_model_13588.4	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4539.1	1	Reactome: R-HSA-430039	"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_2739.1	11	Reactome: R-HSA-5651801;Reactome: R-HSA-5685942;Reactome: R-HSA-5656169;Reactome: R-HSA-110314;Reactome: R-HSA-174430;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-68952;Reactome: R-HSA-5696400;Reactome: R-HSA-68962;Reactome: R-HSA-5696397	"PCNA-Dependent Long Patch Base Excision Repair";"HDR through Homologous Recombination (HRR)";"Termination of translesion DNA synthesis";"Recognition of DNA damage by PCNA-containing replication complex";"Telomere C-strand synthesis initiation";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"DNA replication initiation";"Dual Incision in GG-NER";"Activation of the pre-replicative complex";"Gap-filling DNA repair synthesis and ligation in GG-NER"
JAMg_model_1425.1	4	Reactome: R-HSA-5696394;Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-8856825	"DNA Damage Recognition in GG-NER";"Formation of TC-NER Pre-Incision Complex";"Neddylation";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_18359.2	2	KEGG: 00511+3.2.1.24;Reactome: R-HSA-8853383	"Other glycan degradation";"Lysosomal oligosaccharide catabolism"
JAMg_model_20179.1	8	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-418889;KEGG: 04926+2.7.11.1	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Caspase activation via Dependence Receptors in the absence of ligand";"Relaxin signaling pathway"
JAMg_model_7037.2	1	Reactome: R-HSA-4419969	"Depolymerisation of the Nuclear Lamina"
JAMg_model_8725.2	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_651.2	3	Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.5;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_16361.1	5	Reactome: R-HSA-390450;Reactome: R-HSA-6814122;Reactome: R-HSA-389960;Reactome: R-HSA-389957;Reactome: R-HSA-390471	"Folding of actin by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Formation of tubulin folding intermediates by CCT/TriC";"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_16886.3	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_5172.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_7638.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_8700.3	8	Reactome: R-HSA-380972;Reactome: R-HSA-6798695;Reactome: R-HSA-166208;Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-165159;Reactome: R-HSA-9639288;Reactome: R-HSA-5628897	"Energy dependent regulation of mTOR by LKB1-AMPK";"Neutrophil degranulation";"mTORC1-mediated signalling";"Regulation of PTEN gene transcription";"Macroautophagy";"mTOR signalling";"Amino acids regulate mTORC1";"TP53 Regulates Metabolic Genes"
JAMg_model_1274.4	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_11121.1	8	Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68827;Reactome: R-HSA-68616;Reactome: R-HSA-68867;Reactome: R-HSA-113507;Reactome: R-HSA-68689;Reactome: R-HSA-176187	"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"CDT1 association with the CDC6:ORC:origin complex";"Assembly of the ORC complex at the origin of replication";"Assembly of the pre-replicative complex";"E2F-enabled inhibition of pre-replication complex formation";"CDC6 association with the ORC:origin complex";"Activation of ATR in response to replication stress"
JAMg_model_5689.1	2	Reactome: R-HSA-191859;Reactome: R-HSA-6807505	"snRNP Assembly";"RNA polymerase II transcribes snRNA genes"
JAMg_model_4541.2	7	Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_1335.1	7	Reactome: R-HSA-2122948;Reactome: R-HSA-2894862;Reactome: R-HSA-9013507;MetaCyc: PWY-7511;Reactome: R-HSA-2979096;Reactome: R-HSA-2644606;Reactome: R-HSA-2691232	"Activated NOTCH1 Transmits Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Protein ubiquitination";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD Domain Mutants"
JAMg_model_1335.4	7	Reactome: R-HSA-2691232;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-9013507;MetaCyc: PWY-7511;Reactome: R-HSA-2979096;Reactome: R-HSA-2122948	"Constitutive Signaling by NOTCH1 HD Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Protein ubiquitination";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus"
JAMg_model_2560.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_15697.1	57	Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764	"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling"
JAMg_model_6625.1	4	Reactome: R-HSA-156581;Reactome: R-HSA-6790901;Reactome: R-HSA-6782315;Reactome: R-HSA-72764	"Methylation";"rRNA modification in the nucleus and cytosol";"tRNA modification in the nucleus and cytosol";"Eukaryotic Translation Termination"
JAMg_model_14039.3	7	KEGG: 04070+3.1.4.11;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6367;Reactome: R-HSA-1855204;MetaCyc: PWY-6351;MetaCyc: PWY-8052;MetaCyc: PWY-7039	"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"D-myo-inositol-5-phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"Phosphatidate metabolism, as a signaling molecule"
JAMg_model_18133.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_18237.1	3	Reactome: R-HSA-983231;Reactome: R-HSA-6798695;Reactome: R-HSA-164944	"Factors involved in megakaryocyte development and platelet production";"Neutrophil degranulation";"Nef and signal transduction"
JAMg_model_12934.2	1	Reactome: R-HSA-111957	"Cam-PDE 1 activation"
JAMg_model_4053.1	3	Reactome: R-HSA-6807878;Reactome: R-HSA-204005;Reactome: R-HSA-162658	"COPI-mediated anterograde transport";"COPII-mediated vesicle transport";"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_15367.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_8512.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_17542.1	1	Reactome: R-HSA-77289	"Mitochondrial Fatty Acid Beta-Oxidation"
JAMg_model_17401.2	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_9084.4	2	Reactome: R-HSA-6807505;Reactome: R-HSA-72163	"RNA polymerase II transcribes snRNA genes";"mRNA Splicing - Major Pathway"
JAMg_model_13543.1	3	Reactome: R-HSA-6787450;Reactome: R-HSA-8868766;Reactome: R-HSA-6785470	"tRNA modification in the mitochondrion";"rRNA processing in the mitochondrion";"tRNA processing in the mitochondrion"
JAMg_model_61.1	5	Reactome: R-HSA-5579026;Reactome: R-HSA-1362409;Reactome: R-HSA-211976;Reactome: R-HSA-2395516;Reactome: R-HSA-196108	"Defective CYP11A1 causes Adrenal insufficiency, congenital, with 46,XY sex reversal (AICSR)";"Mitochondrial iron-sulfur cluster biogenesis";"Endogenous sterols";"Electron transport from NADPH to Ferredoxin";"Pregnenolone biosynthesis"
JAMg_model_7489.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15652.1	3	Reactome: R-HSA-192456;KEGG: 00561+3.1.1.3;MetaCyc: PWY-6857	"Digestion of dietary lipid";"Glycerolipid metabolism";"Retinol biosynthesis"
JAMg_model_12508.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_8369.1	3	Reactome: R-HSA-2142700;Reactome: R-HSA-2142691;KEGG: 00970+6.3.5.7	"Synthesis of Lipoxins (LX)";"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Aminoacyl-tRNA biosynthesis"
JAMg_model_7209.1	56	Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-382556	"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"FCERI mediated NF-kB activation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"ABC-family proteins mediated transport"
JAMg_model_2074.2	2	Reactome: R-HSA-8876198;Reactome: R-HSA-5357905	"RAB GEFs exchange GTP for GDP on RABs";"Regulation of TNFR1 signaling"
JAMg_model_11034.2	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_2682.1	2	Reactome: R-HSA-190873;Reactome: R-HSA-399719	"Gap junction degradation";"Trafficking of AMPA receptors"
JAMg_model_4485.2	4	Reactome: R-HSA-5689603;Reactome: R-HSA-3214847;KEGG: 00514+2.4.1.255;MetaCyc: PWY-7437	"UCH proteinases";"HATs acetylate histones";"Other types of O-glycan biosynthesis";"Protein O-[N-acetyl]-glucosylation"
JAMg_model_9210.1	8	Reactome: R-HSA-5628897;Reactome: R-HSA-9619483;Reactome: R-HSA-1445148;Reactome: R-HSA-9613354;Reactome: R-HSA-1632852;Reactome: R-HSA-2151209;Reactome: R-HSA-6804756;Reactome: R-HSA-380972	"TP53 Regulates Metabolic Genes";"Activation of AMPK downstream of NMDARs";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Lipophagy";"Macroautophagy";"Activation of PPARGC1A (PGC-1alpha) by phosphorylation";"Regulation of TP53 Activity through Phosphorylation";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_19649.1	2	KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_5561.4	5	Reactome: R-HSA-9639288;Reactome: R-HSA-1222556;Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387	"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes";"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling"
JAMg_model_13622.1	10	KEGG: 00332+1.2.1.41;KEGG: 00330+2.7.2.11;Reactome: R-HSA-8964539;KEGG: 00330+1.2.1.41+2.7.2.11;KEGG: 00332+2.7.2.11+1.2.1.41;MetaCyc: PWY-6922;KEGG: 00330+1.2.1.41;KEGG: 00330+2.7.2.11+1.2.1.41;KEGG: 00332+2.7.2.11;KEGG: 00332+1.2.1.41+2.7.2.11	"Carbapenem biosynthesis";"Arginine and proline metabolism";"Glutamate and glutamine metabolism";"Arginine and proline metabolism";"Carbapenem biosynthesis";"L-Ndelta-acetylornithine biosynthesis";"Arginine and proline metabolism";"Arginine and proline metabolism";"Carbapenem biosynthesis";"Carbapenem biosynthesis"
JAMg_model_20801.1	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_11007.1	1	Reactome: R-HSA-162791	"Attachment of GPI anchor to uPAR"
JAMg_model_5069.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_4090.2	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_4768.1	2	Reactome: R-HSA-381038;Reactome: R-HSA-1799339	"XBP1(S) activates chaperone genes";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_3148.4	8	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Signaling by Hippo";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis"
JAMg_model_2804.1	5	Reactome: R-HSA-5218920;Reactome: R-HSA-1257604;Reactome: R-HSA-6804757;Reactome: R-HSA-5674400;Reactome: R-HSA-389357	"VEGFR2 mediated vascular permeability";"PIP3 activates AKT signaling";"Regulation of TP53 Degradation";"Constitutive Signaling by AKT1 E17K in Cancer";"CD28 dependent PI3K/Akt signaling"
JAMg_model_650.3	4	KEGG: 00270+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00480+2.5.1.16;Reactome: R-HSA-351202	"Cysteine and methionine metabolism";"Arginine and proline metabolism";"Glutathione metabolism";"Metabolism of polyamines"
JAMg_model_19213.2	3	Reactome: R-HSA-6798695;MetaCyc: PWY-6807;KEGG: 00511+3.2.1.51	"Neutrophil degranulation";"Xyloglucan degradation II (exoglucanase)";"Other glycan degradation"
JAMg_model_16115.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_13255.1	7	Reactome: R-HSA-1221632;Reactome: R-HSA-2559586;Reactome: R-HSA-110328;Reactome: R-HSA-110330;Reactome: R-HSA-171306;Reactome: R-HSA-110329;Reactome: R-HSA-110331	"Meiotic synapsis";"DNA Damage/Telomere Stress Induced Senescence";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Recognition and association of DNA glycosylase with site containing an affected purine";"Packaging Of Telomere Ends";"Cleavage of the damaged pyrimidine";"Cleavage of the damaged purine"
JAMg_model_19888.2	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_7189.7	3	Reactome: R-HSA-416482;Reactome: R-HSA-194840;Reactome: R-HSA-193648	"G alpha (12/13) signalling events";"Rho GTPase cycle";"NRAGE signals death through JNK"
JAMg_model_10492.3	1	Reactome: R-HSA-110357	"Displacement of DNA glycosylase by APEX1"
JAMg_model_4485.1	4	Reactome: R-HSA-3214847;KEGG: 00514+2.4.1.255;MetaCyc: PWY-7437;Reactome: R-HSA-5689603	"HATs acetylate histones";"Other types of O-glycan biosynthesis";"Protein O-[N-acetyl]-glucosylation";"UCH proteinases"
JAMg_model_10201.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_3662.4	16	Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_9396.3	2	Reactome: R-HSA-202733;Reactome: R-HSA-416993	"Cell surface interactions at the vascular wall";"Trafficking of GluR2-containing AMPA receptors"
JAMg_model_9535.1	29	Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-5693571;KEGG: 04151+2.7.11.1;Reactome: R-HSA-5693568;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-6803204;Reactome: R-HSA-5693548;Reactome: R-HSA-5693579;KEGG: 04714+2.7.11.1;Reactome: R-HSA-2559586;Reactome: R-HSA-6804757;Reactome: R-HSA-6804756;Reactome: R-HSA-6803207;Reactome: R-HSA-5693565;KEGG: 05170+2.7.11.1;Reactome: R-HSA-912446;Reactome: R-HSA-6804760;Reactome: R-HSA-349425;Reactome: R-HSA-69541;Reactome: R-HSA-3371453;KEGG: 05163+2.7.11.1;Reactome: R-HSA-5693554;Reactome: R-HSA-6796648;Reactome: R-HSA-5685938	"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Relaxin signaling pathway";"Human papillomavirus infection";"mTOR signaling pathway";"Nonhomologous End-Joining (NHEJ)";"PI3K-Akt signaling pathway";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"Sensing of DNA Double Strand Breaks";"Homologous DNA Pairing and Strand Exchange";"Thermogenesis";"DNA Damage/Telomere Stress Induced Senescence";"Regulation of TP53 Degradation";"Regulation of TP53 Activity through Phosphorylation";"TP53 Regulates Transcription of Caspase Activators and Caspases";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"Human immunodeficiency virus 1 infection";"Meiotic recombination";"Regulation of TP53 Activity through Methylation";"Autodegradation of the E3 ubiquitin ligase COP1";"Stabilization of p53";"Regulation of HSF1-mediated heat shock response";"Human cytomegalovirus infection";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"TP53 Regulates Transcription of DNA Repair Genes";"HDR through Single Strand Annealing (SSA)"
JAMg_model_21260.6	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_361.6	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_5838.1	5	MetaCyc: PWY-7279;KEGG: 00190+7.1.1.8;MetaCyc: PWY-6692;MetaCyc: PWY-3781;MetaCyc: PWY-7082	"Aerobic respiration II (cytochrome c) (yeast)";"Oxidative phosphorylation";"Fe(II) oxidation";"Aerobic respiration I (cytochrome c)";"Ammonia oxidation IV (autotrophic ammonia oxidizers)"
JAMg_model_6601.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_21356.3	9	Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-75953	"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation"
JAMg_model_8020.1	1	Reactome: R-HSA-2393930	"Phosphate bond hydrolysis by NUDT proteins"
JAMg_model_15493.1	20	MetaCyc: PWY-735;MetaCyc: PWY-7854;MetaCyc: PWY-7291;MetaCyc: PWY-7338;MetaCyc: PWY-7288;MetaCyc: PWY-7858;KEGG: 00071+1.3.3.6;KEGG: 00592+1.3.3.6;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6;MetaCyc: PWY-7574;MetaCyc: PWY-7337;Reactome: R-HSA-9033241;MetaCyc: PWY-5136;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-7007;MetaCyc: PWY-7726;MetaCyc: PWY-7606;KEGG: 00640+1.3.3.6	"Jasmonic acid biosynthesis";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Oleate beta-oxidation (isomerase-dependent, yeast)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"(5Z)-dodecenoate biosynthesis II";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Peroxisomal protein import";"Fatty acid beta-oxidation II (plant peroxisome)";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Methyl ketone biosynthesis (engineered)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Propanoate metabolism"
JAMg_model_7088.1	3	MetaCyc: PWY-6369;Reactome: R-HSA-1855167;KEGG: 04070+2.7.4.24+2.7.4.21	"Inositol diphosphates biosynthesis";"Synthesis of pyrophosphates in the cytosol";"Phosphatidylinositol signaling system"
JAMg_model_14361.1	4	MetaCyc: PWY-5028;KEGG: 00340+4.2.1.49;MetaCyc: PWY-5030;Reactome: R-HSA-70921	"L-histidine degradation II";"Histidine metabolism";"L-histidine degradation III";"Histidine catabolism"
JAMg_model_5161.1	5	Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556	"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes"
JAMg_model_4386.1	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_5442.1	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_6599.2	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_4116.5	3	KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16	"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway"
JAMg_model_17866.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_14261.2	3	Reactome: R-HSA-196757;KEGG: 00790+6.3.2.17;MetaCyc: PWY-2161	"Metabolism of folate and pterines";"Folate biosynthesis";"Folate polyglutamylation"
JAMg_model_20613.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_7979.3	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_3715.5	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_7900.2	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_16555.1	15	MetaCyc: PWY-5723;MetaCyc: PWY-2221;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-7218;MetaCyc: PWY-7383;MetaCyc: PWY-6901;MetaCyc: PWY-5484;KEGG: 00010+2.7.1.40;MetaCyc: PWY-1042;KEGG: 00230+2.7.1.40;MetaCyc: PWY-6142;KEGG: 00620+2.7.1.40;MetaCyc: PWY-7003;Reactome: R-HSA-70171	"Rubisco shunt";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis / Gluconeogenesis";"Glycolysis IV (plant cytosol)";"Purine metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Pyruvate metabolism";"Glycerol degradation to butanol";"Glycolysis"
JAMg_model_18243.1	2	Reactome: R-HSA-201722;Reactome: R-HSA-171319	"Formation of the beta-catenin:TCF transactivating complex";"Telomere Extension By Telomerase"
JAMg_model_10520.1	5	KEGG: 00510+1.3.1.94;MetaCyc: PWY-6129;Reactome: R-HSA-4755579;Reactome: R-HSA-446199;Reactome: R-HSA-193048	"N-Glycan biosynthesis";"Dolichol and dolichyl phosphate biosynthesis";"Defective SRD5A3 causes SRD5A3-CDG (CDG-1q) and KHRZ";"Synthesis of Dolichyl-phosphate";"Androgen biosynthesis"
JAMg_model_11395.3	2	Reactome: R-HSA-8964539;Reactome: R-HSA-2151201	"Glutamate and glutamine metabolism";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_7100.1	2	Reactome: R-HSA-3295583;Reactome: R-HSA-418890	"TRP channels";"Role of second messengers in netrin-1 signaling"
JAMg_model_12490.1	3	Reactome: R-HSA-74259;Reactome: R-HSA-73621;Reactome: R-HSA-196807	"Purine catabolism";"Pyrimidine catabolism";"Nicotinate metabolism"
JAMg_model_824.1	2	Reactome: R-HSA-3295583;Reactome: R-HSA-418890	"TRP channels";"Role of second messengers in netrin-1 signaling"
JAMg_model_16886.2	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_10741.2	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_219.1	1	Reactome: R-HSA-418990	"Adherens junctions interactions"
JAMg_model_10683.1	1	Reactome: R-HSA-880009	"Interconversion of 2-oxoglutarate and 2-hydroxyglutarate"
JAMg_model_7963.1	6	Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827	"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_9593.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_3265.1	1	MetaCyc: PWY-7942	"5-oxo-L-proline metabolism"
JAMg_model_7739.1	2	Reactome: R-HSA-429947;Reactome: R-HSA-6804115	"Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain"
JAMg_model_12509.1	1	Reactome: R-HSA-73943	"Reversal of alkylation damage by DNA dioxygenases"
JAMg_model_12515.1	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_6648.1	4	Reactome: R-HSA-1442490;Reactome: R-HSA-2022090;Reactome: R-HSA-1650814;Reactome: R-HSA-8948216	"Collagen degradation";"Assembly of collagen fibrils and other multimeric structures";"Collagen biosynthesis and modifying enzymes";"Collagen chain trimerization"
JAMg_model_4807.1	4	Reactome: R-HSA-8856825;Reactome: R-HSA-8951664;Reactome: R-HSA-6781823;Reactome: R-HSA-5696394	"Cargo recognition for clathrin-mediated endocytosis";"Neddylation";"Formation of TC-NER Pre-Incision Complex";"DNA Damage Recognition in GG-NER"
JAMg_model_17757.1	2	Reactome: R-HSA-8856825;Reactome: R-HSA-8856828	"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis"
JAMg_model_3789.2	2	KEGG: 00511+3.2.1.24;Reactome: R-HSA-8853383	"Other glycan degradation";"Lysosomal oligosaccharide catabolism"
JAMg_model_1151.4	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_4580.2	7	MetaCyc: PWY-8026;Reactome: R-HSA-9022692;MetaCyc: PWY-7154;MetaCyc: PWY-2541;MetaCyc: PWY-6074;Reactome: R-HSA-191273;KEGG: 00100+1.3.1.70	"Sterol biosynthesis (methylotrophs)";"Regulation of MECP2 expression and activity";"Ergosterol biosynthesis II";"Phytosterol biosynthesis (plants)";"Zymosterol biosynthesis";"Cholesterol biosynthesis";"Steroid biosynthesis"
JAMg_model_18596.1	3	KEGG: 00600+3.1.4.12;MetaCyc: PWY-7277;Reactome: R-HSA-1660662	"Sphingolipid metabolism";"Sphingolipid biosynthesis (mammals)";"Glycosphingolipid metabolism"
JAMg_model_7843.1	1	Reactome: R-HSA-9603798	"Class I peroxisomal membrane protein import"
JAMg_model_19961.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-8953750	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Transcriptional Regulation by E2F6"
JAMg_model_15471.1	57	Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-1169091;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761	"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Activation of NF-kappaB in B cells";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling"
JAMg_model_16672.1	3	Reactome: R-HSA-8876198;Reactome: R-HSA-6811438;Reactome: R-HSA-6811440	"RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_14641.2	1	Reactome: R-HSA-1614517	"Sulfide oxidation to sulfate"
JAMg_model_1225.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_15597.1	40	Reactome: R-HSA-6782135;Reactome: R-HSA-73776;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-167162;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-9018519;Reactome: R-HSA-76042;Reactome: R-HSA-5601884;Reactome: R-HSA-6803529;Reactome: R-HSA-72203;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-6781827;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-167160;Reactome: R-HSA-5578749;Reactome: R-HSA-72163;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-203927;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-77075;Reactome: R-HSA-8851708;Reactome: R-HSA-5617472;Reactome: R-HSA-167172;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-6781823;Reactome: R-HSA-167238;Reactome: R-HSA-72086	"Dual incision in TC-NER";"RNA Polymerase II Promoter Escape";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II HIV Promoter Escape";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Estrogen-dependent gene expression";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"PIWI-interacting RNA (piRNA) biogenesis";"FGFR2 alternative splicing";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Transcriptional regulation by small RNAs";"mRNA Splicing - Major Pathway";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"MicroRNA (miRNA) biogenesis";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"RNA Pol II CTD phosphorylation and interaction with CE";"Signaling by FGFR2 IIIa TM";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcription of the HIV genome";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Formation of TC-NER Pre-Incision Complex";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Capping"
JAMg_model_20881.2	16	Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764	"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Viral mRNA Translation";"Peptide chain elongation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination"
JAMg_model_7287.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-5628897	"Respiratory electron transport";"TP53 Regulates Metabolic Genes"
JAMg_model_5024.1	1	Reactome: R-HSA-1614635	"Sulfur amino acid metabolism"
JAMg_model_2066.1	4	Reactome: R-HSA-3928662;Reactome: R-HSA-5663213;Reactome: R-HSA-2029482;Reactome: R-HSA-8856828	"EPHB-mediated forward signaling";"RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation";"Clathrin-mediated endocytosis"
JAMg_model_6531.1	10	MetaCyc: PWY-6369;KEGG: 04070+2.7.1.158;MetaCyc: PWY-6372;Reactome: R-HSA-1855191;MetaCyc: PWY-6362;Reactome: R-HSA-1855167;MetaCyc: PWY-4661;MetaCyc: PWY-6554;KEGG: 00562+2.7.1.158;MetaCyc: PWY-6361	"Inositol diphosphates biosynthesis";"Phosphatidylinositol signaling system";"1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)";"Synthesis of IPs in the nucleus";"1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)";"Synthesis of pyrophosphates in the cytosol";"1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)";"1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)";"Inositol phosphate metabolism";"1D-myo-inositol hexakisphosphate biosynthesis I (from Ins(1,4,5)P3)"
JAMg_model_18594.1	5	Reactome: R-HSA-8856828;Reactome: R-HSA-6798695;Reactome: R-HSA-3928662;Reactome: R-HSA-2029482;Reactome: R-HSA-5663213	"Clathrin-mediated endocytosis";"Neutrophil degranulation";"EPHB-mediated forward signaling";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs"
JAMg_model_583.9	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_12447.1	2	Reactome: R-HSA-983231;Reactome: R-HSA-383280	"Factors involved in megakaryocyte development and platelet production";"Nuclear Receptor transcription pathway"
JAMg_model_16816.3	1	Reactome: R-HSA-70895	"Branched-chain amino acid catabolism"
JAMg_model_14961.5	4	MetaCyc: PWY-6987;MetaCyc: PWY-7382;KEGG: 00785+2.8.1.8;Reactome: R-HSA-389661	"Lipoate biosynthesis and incorporation III (Bacillus)";"Lipoate biosynthesis and incorporation IV (yeast)";"Lipoic acid metabolism";"Glyoxylate metabolism and glycine degradation"
JAMg_model_931.1	3	Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-112382	"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Formation of RNA Pol II elongation complex"
JAMg_model_19043.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_10807.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_9186.8	6	MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7817;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;Reactome: R-HSA-114508	"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Effects of PIP2 hydrolysis"
JAMg_model_18865.1	6	Reactome: R-HSA-977347;MetaCyc: PWY-8010;KEGG: 00270+2.6.1.52;KEGG: 00260+2.6.1.52;KEGG: 00680+2.6.1.52;KEGG: 00750+2.6.1.52	"Serine biosynthesis";"L-cysteine biosynthesis IX (Trichomonas vaginalis)";"Cysteine and methionine metabolism";"Glycine, serine and threonine metabolism";"Methane metabolism";"Vitamin B6 metabolism"
JAMg_model_17610.1	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_7002.2	1	MetaCyc: PWY-7437	"Protein O-[N-acetyl]-glucosylation"
JAMg_model_11987.1	11	Reactome: R-HSA-5610787;Reactome: R-HSA-163615;Reactome: R-HSA-170670;Reactome: R-HSA-418597;Reactome: R-HSA-418594;Reactome: R-HSA-163359;Reactome: R-HSA-432040;Reactome: R-HSA-170660;KEGG: 00230+4.6.1.1;Reactome: R-HSA-418555;Reactome: R-HSA-164378	"Hedgehog 'off' state";"PKA activation";"Adenylate cyclase inhibitory pathway";"G alpha (z) signalling events";"G alpha (i) signalling events";"Glucagon signaling in metabolic regulation";"Vasopressin regulates renal water homeostasis via Aquaporins";"Adenylate cyclase activating pathway";"Purine metabolism";"G alpha (s) signalling events";"PKA activation in glucagon signalling"
JAMg_model_4711.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_266.1	13	KEGG: 00983+1.17.4.1;MetaCyc: PWY-7220;MetaCyc: PWY-7198;KEGG: 00240+1.17.4.1;MetaCyc: PWY-7210;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7184;MetaCyc: PWY-7222;MetaCyc: PWY-7227;KEGG: 00230+1.17.4.1;MetaCyc: PWY-7226;KEGG: 00480+1.17.4.1	"Drug metabolism - other enzymes";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Adenosine deoxyribonucleotides de novo biosynthesis";"Purine metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Glutathione metabolism"
JAMg_model_17023.1	1	KEGG: 00900+3.4.24.84	"Terpenoid backbone biosynthesis"
JAMg_model_15722.1	2	Reactome: R-HSA-4090294;Reactome: R-HSA-383280	"SUMOylation of intracellular receptors";"Nuclear Receptor transcription pathway"
JAMg_model_6375.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_2157.3	1	Reactome: R-HSA-189451	"Heme biosynthesis"
JAMg_model_11842.2	17	Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-6790901;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Peptide chain elongation";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"rRNA modification in the nucleus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_15201.1	10	Reactome: R-HSA-8934903;Reactome: R-HSA-6814122;Reactome: R-HSA-6804756;Reactome: R-HSA-6798695;Reactome: R-HSA-201688;Reactome: R-HSA-8939243;Reactome: R-HSA-1483191;Reactome: R-HSA-2514853;Reactome: R-HSA-8948751;Reactome: R-HSA-445144	"Receptor Mediated Mitophagy";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Regulation of TP53 Activity through Phosphorylation";"Neutrophil degranulation";"WNT mediated activation of DVL";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Synthesis of PC";"Condensation of Prometaphase Chromosomes";"Regulation of PTEN stability and activity";"Signal transduction by L1"
JAMg_model_811.1	8	MetaCyc: PWY-7400;MetaCyc: PWY-5;MetaCyc: PWY-5154;Reactome: R-HSA-70635;MetaCyc: PWY-4984;KEGG: 00250+6.3.4.5;KEGG: 00220+6.3.4.5;MetaCyc: PWY-4983	"L-arginine biosynthesis IV (archaebacteria)";"Canavanine biosynthesis";"L-arginine biosynthesis III (via N-acetyl-L-citrulline)";"Urea cycle";"Urea cycle";"Alanine, aspartate and glutamate metabolism";"Arginine biosynthesis";"Nitric oxide biosynthesis II (mammals)"
JAMg_model_4275.1	1	Reactome: R-HSA-5693571	"Nonhomologous End-Joining (NHEJ)"
JAMg_model_19218.1	2	Reactome: R-HSA-427413;Reactome: R-HSA-3214815	"NoRC negatively regulates rRNA expression";"HDACs deacetylate histones"
JAMg_model_19199.2	1	KEGG: 00970+6.1.1.3	"Aminoacyl-tRNA biosynthesis"
JAMg_model_4116.10	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_4371.1	5	Reactome: R-HSA-1834949;Reactome: R-HSA-5693571;Reactome: R-HSA-6798695;Reactome: R-HSA-164843;Reactome: R-HSA-3270619	"Cytosolic sensors of pathogen-associated DNA";"Nonhomologous End-Joining (NHEJ)";"Neutrophil degranulation";"2-LTR circle formation";"IRF3-mediated induction of type I IFN"
JAMg_model_17269.3	3	Reactome: R-HSA-6782315;MetaCyc: PWY-8106;MetaCyc: PWY-6700	"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis III (queuosine salvage)";"Queuosine biosynthesis I (de novo)"
JAMg_model_3324.1	3	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15;Reactome: R-HSA-5628897	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism";"TP53 Regulates Metabolic Genes"
JAMg_model_2059.5	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_17277.2	6	MetaCyc: PWY-5723;KEGG: 00710+5.1.3.1;KEGG: 00030+5.1.3.1;MetaCyc: PWY-1861;KEGG: 00040+5.1.3.1;Reactome: R-HSA-71336	"Rubisco shunt";"Carbon fixation in photosynthetic organisms";"Pentose phosphate pathway";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Pentose and glucuronate interconversions";"Pentose phosphate pathway"
JAMg_model_14914.1	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_10713.4	2	Reactome: R-HSA-163210;Reactome: R-HSA-8949613	"Formation of ATP by chemiosmotic coupling";"Cristae formation"
JAMg_model_11092.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_13140.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_8477.5	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_11713.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15860.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"Generic Transcription Pathway";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_16773.1	27	Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-5619107;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-168333;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-3232142;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-5578749;Reactome: R-HSA-4570464;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-170822;Reactome: R-HSA-168276;Reactome: R-HSA-168271;Reactome: R-HSA-159227;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-3301854	"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"SUMOylation of DNA replication proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of ubiquitinylation proteins";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"Transcriptional regulation by small RNAs";"SUMOylation of RNA binding proteins";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NS1 Mediated Effects on Host Pathways";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of the SLBP independent Mature mRNA";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly"
JAMg_model_3669.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_15277.6	10	MetaCyc: PWY-5030;Reactome: R-HSA-196757;MetaCyc: PWY-6613;MetaCyc: PWY-7909;MetaCyc: PWY-3841;MetaCyc: PWY-5497;MetaCyc: PWY-2201;KEGG: 00670+1.5.1.5+3.5.4.9;KEGG: 00720+1.5.1.5+3.5.4.9;MetaCyc: PWY-1722	"L-histidine degradation III";"Metabolism of folate and pterines";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Formaldehyde oxidation VII (THF pathway)";"Folate transformations II (plants)";"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"One carbon pool by folate";"Carbon fixation pathways in prokaryotes";"Formate assimilation into 5,10-methylenetetrahydrofolate"
JAMg_model_13234.1	1	Reactome: R-HSA-9609523	"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_446.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_17792.1	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_15187.2	5	Reactome: R-HSA-75035;Reactome: R-HSA-5628897;Reactome: R-HSA-1445148;Reactome: R-HSA-111447;Reactome: R-HSA-5625740	"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"TP53 Regulates Metabolic Genes";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Activation of BAD and translocation to mitochondria";"RHO GTPases activate PKNs"
JAMg_model_5303.2	4	Reactome: R-HSA-4755583;Reactome: R-HSA-446199;KEGG: 00510+2.7.1.108;MetaCyc: PWY-6129	"Defective DOLK causes DOLK-CDG (CDG-1m)";"Synthesis of Dolichyl-phosphate";"N-Glycan biosynthesis";"Dolichol and dolichyl phosphate biosynthesis"
JAMg_model_21184.1	1	Reactome: R-HSA-204626	"Hypusine synthesis from eIF5A-lysine"
JAMg_model_8153.4	3	KEGG: 00260+3.1.3.3;Reactome: R-HSA-977347;KEGG: 00680+3.1.3.3	"Glycine, serine and threonine metabolism";"Serine biosynthesis";"Methane metabolism"
JAMg_model_5158.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_6979.1	13	Reactome: R-HSA-3371511;Reactome: R-HSA-9646399;Reactome: R-HSA-5362768;Reactome: R-HSA-5358346;Reactome: R-HSA-5689896;Reactome: R-HSA-8876725;Reactome: R-HSA-532668;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-5689877;Reactome: R-HSA-110320;Reactome: R-HSA-382556;Reactome: R-HSA-8866654	"HSF1 activation";"Aggrephagy";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Hedgehog ligand biogenesis";"Ovarian tumor domain proteases";"Protein methylation";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Josephin domain DUBs";"Translesion Synthesis by POLH";"ABC-family proteins mediated transport";"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_11008.1	1	Reactome: R-HSA-433137	"Sodium-coupled sulphate, di- and tri-carboxylate transporters"
JAMg_model_2627.1	2	KEGG: 00071+2.3.1.21;MetaCyc: PWY-6111	"Fatty acid degradation";"Mitochondrial L-carnitine shuttle"
JAMg_model_14591.3	22	Reactome: R-HSA-2500257;Reactome: R-HSA-5358751;Reactome: R-HSA-9648025;Reactome: R-HSA-4641262;Reactome: R-HSA-2467813;Reactome: R-HSA-5358747;Reactome: R-HSA-5467348;Reactome: R-HSA-5358752;Reactome: R-HSA-68877;Reactome: R-HSA-5467337;Reactome: R-HSA-5675221;Reactome: R-HSA-5358749;Reactome: R-HSA-196299;Reactome: R-HSA-5673000;Reactome: R-HSA-5467340;Reactome: R-HSA-389513;Reactome: R-HSA-432142;Reactome: R-HSA-5339716;Reactome: R-HSA-141444;Reactome: R-HSA-6811558;Reactome: R-HSA-195253;Reactome: R-HSA-5663220	"Resolution of Sister Chromatid Cohesion";"S45 mutants of beta-catenin aren't phosphorylated";"EML4 and NUDC in mitotic spindle formation";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"Separation of Sister Chromatids";"S33 mutants of beta-catenin aren't phosphorylated";"Truncations of AMER1 destabilize the destruction complex";"T41 mutants of beta-catenin aren't phosphorylated";"Mitotic Prometaphase";"APC truncation mutants have impaired AXIN binding";"Negative regulation of MAPK pathway";"S37 mutants of beta-catenin aren't phosphorylated";"Beta-catenin phosphorylation cascade";"RAF activation";"AXIN missense mutants destabilize the destruction complex";"CTLA4 inhibitory signaling";"Platelet sensitization by LDL";"Misspliced GSK3beta mutants stabilize beta-catenin";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Degradation of beta-catenin by the destruction complex";"RHO GTPases Activate Formins"
JAMg_model_7884.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_14414.2	3	Reactome: R-HSA-1660662;Reactome: R-HSA-5626978;Reactome: R-HSA-193681	"Glycosphingolipid metabolism";"TNFR1-mediated ceramide production";"Ceramide signalling"
JAMg_model_11442.3	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_20059.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_2157.2	1	Reactome: R-HSA-189451	"Heme biosynthesis"
JAMg_model_5212.1	4	MetaCyc: PWY-6482;Reactome: R-HSA-5358493;MetaCyc: PWY-7546;Reactome: R-HSA-8849175	"Diphthamide biosynthesis I (archaea)";"Synthesis of diphthamide-EEF2";"Diphthamide biosynthesis II (eukaryotes)";"Threonine catabolism"
JAMg_model_7256.2	3	Reactome: R-HSA-5620916;Reactome: R-HSA-1445148;Reactome: R-HSA-264876	"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing"
JAMg_model_14124.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_8550.8	14	MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7725;MetaCyc: PWY-5080;MetaCyc: PWY-8041;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7619;KEGG: 00062+2.3.1.199;MetaCyc: PWY-5972;MetaCyc: PWY-7035;Reactome: R-HSA-75876	"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Ultra-long-chain fatty acid biosynthesis";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Juniperonate biosynthesis";"Fatty acid elongation";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs"
JAMg_model_9685.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_20955.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_4828.2	3	Reactome: R-HSA-5663220;Reactome: R-HSA-9634638;Reactome: R-HSA-525793	"RHO GTPases Activate Formins";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"Myogenesis"
JAMg_model_1293.2	6	MetaCyc: PWY-1622;MetaCyc: PWY-8004;MetaCyc: PWY-5484;KEGG: 00680+5.4.2.11;KEGG: 00010+5.4.2.11;KEGG: 00260+5.4.2.11	"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I";"Glycolysis II (from fructose 6-phosphate)";"Methane metabolism";"Glycolysis / Gluconeogenesis";"Glycine, serine and threonine metabolism"
JAMg_model_7094.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_10824.4	12	KEGG: 00230+2.7.1.25;MetaCyc: PWY-5278;KEGG: 00920+2.7.7.4;Reactome: R-HSA-2408550;Reactome: R-HSA-174362;KEGG: 00450+2.7.7.4;KEGG: 00261+2.7.7.4;MetaCyc: PWY-5340;MetaCyc: PWY-6683;KEGG: 00230+2.7.7.4;KEGG: 00920+2.7.1.25;MetaCyc: PWY-6932	"Purine metabolism";"Sulfite oxidation III";"Sulfur metabolism";"Metabolism of ingested H2SeO4 and H2SeO3 into H2Se";"Transport and synthesis of PAPS";"Selenocompound metabolism";"Monobactam biosynthesis";"Sulfate activation for sulfonation";"Assimilatory sulfate reduction III";"Purine metabolism";"Sulfur metabolism";"Selenate reduction"
JAMg_model_9515.2	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_1877.1	14	Reactome: R-HSA-5655862;Reactome: R-HSA-69091;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121;Reactome: R-HSA-5685942;Reactome: R-HSA-174411;Reactome: R-HSA-110314;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-5696397	"Translesion synthesis by POLK";"Polymerase switching";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI";"HDR through Homologous Recombination (HRR)";"Polymerase switching on the C-strand of the telomere";"Recognition of DNA damage by PCNA-containing replication complex";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Gap-filling DNA repair synthesis and ligation in GG-NER"
JAMg_model_15508.2	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_13056.6	13	Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557	"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis"
JAMg_model_13403.2	1	Reactome: R-HSA-425410	"Metal ion SLC transporters"
JAMg_model_11686.2	7	Reactome: R-HSA-983170;Reactome: R-HSA-3371453;Reactome: R-HSA-381183;Reactome: R-HSA-114608;Reactome: R-HSA-381042;Reactome: R-HSA-381070;Reactome: R-HSA-381033	"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Regulation of HSF1-mediated heat shock response";"ATF6 (ATF6-alpha) activates chaperone genes";"Platelet degranulation";"PERK regulates gene expression";"IRE1alpha activates chaperones";"ATF6 (ATF6-alpha) activates chaperones"
JAMg_model_14760.1	2	Reactome: R-HSA-1483148;Reactome: R-HSA-1483166	"Synthesis of PG";"Synthesis of PA"
JAMg_model_9652.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_5776.2	3	Reactome: R-HSA-1614603;Reactome: R-HSA-2408508;Reactome: R-HSA-1614558	"Cysteine formation from homocysteine";"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Degradation of cysteine and homocysteine"
JAMg_model_1117.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_10701.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_4871.2	4	MetaCyc: PWY-6855;MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00520+3.2.1.14	"Chitin degradation I (archaea)";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_197.2	29	Reactome: R-HSA-427413;Reactome: R-HSA-167160;Reactome: R-HSA-167161;Reactome: R-HSA-5696400;Reactome: R-HSA-73776;Reactome: R-HSA-674695;Reactome: R-HSA-73772;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-112382;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-5696395;Reactome: R-HSA-73762;Reactome: R-HSA-167246;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-6782210;Reactome: R-HSA-77075;Reactome: R-HSA-75955;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-72086;Reactome: R-HSA-6781823;Reactome: R-HSA-76042;Reactome: R-HSA-73863	"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV Transcription Initiation";"Dual Incision in GG-NER";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase I Promoter Escape";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of Incision Complex in GG-NER";"RNA Polymerase I Transcription Initiation";"Tat-mediated elongation of the HIV-1 transcript";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Elongation";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"mRNA Capping";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase I Transcription Termination"
JAMg_model_17071.2	44	Reactome: R-HSA-5674135;Reactome: R-HSA-445144;Reactome: R-HSA-1295596;Reactome: R-HSA-5663213;Reactome: R-HSA-6811558;Reactome: R-HSA-5673001;Reactome: R-HSA-6802955;Reactome: R-HSA-6802946;Reactome: R-HSA-444257;Reactome: R-HSA-2029482;Reactome: R-HSA-74749;Reactome: R-HSA-198753;Reactome: R-HSA-170968;Reactome: R-HSA-982772;Reactome: R-HSA-881907;Reactome: R-HSA-2559585;Reactome: R-HSA-6802948;Reactome: R-HSA-9634638;Reactome: R-HSA-9635465;Reactome: R-HSA-5654733;Reactome: R-HSA-8943724;Reactome: R-HSA-9627069;Reactome: R-HSA-162658;Reactome: R-HSA-5654727;KEGG: 04150+2.7.11.24;Reactome: R-HSA-9649948;Reactome: R-HSA-8940973;Reactome: R-HSA-6802952;Reactome: R-HSA-5654726;Reactome: R-HSA-450341;Reactome: R-HSA-456926;Reactome: R-HSA-2559582;Reactome: R-HSA-5654732;Reactome: R-HSA-5668599;Reactome: R-HSA-5675221;Reactome: R-HSA-3371453;Reactome: R-HSA-2559580;Reactome: R-HSA-8939211;Reactome: R-HSA-879415;Reactome: R-HSA-2871796;Reactome: R-HSA-202670;Reactome: R-HSA-375165;Reactome: R-HSA-112409;Reactome: R-HSA-5674499	"MAP2K and MAPK activation";"Signal transduction by L1";"Spry regulation of FGF signaling";"RHO GTPases Activate WASPs and WAVEs";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"RAF/MAP kinase cascade";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Signaling by moderate kinase activity BRAF mutants";"RSK activation";"Regulation of actin dynamics for phagocytic cup formation";"Signal attenuation";"ERK/MAPK targets";"Frs2-mediated activation";"Growth hormone receptor signaling";"Gastrin-CREB signalling pathway via PKC and MAPK";"Oncogene Induced Senescence";"Signaling by high-kinase activity BRAF mutants";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"Suppression of apoptosis";"Negative regulation of FGFR4 signaling";"Regulation of PTEN gene transcription";"Regulation of the apoptosome activity";"Golgi Cisternae Pericentriolar Stack Reorganization";"Negative regulation of FGFR2 signaling";"mTOR signaling pathway";"Signaling downstream of RAS mutants";"RUNX2 regulates osteoblast differentiation";"Signaling by BRAF and RAF fusions";"Negative regulation of FGFR1 signaling";"Activation of the AP-1 family of transcription factors";"Thrombin signalling through proteinase activated receptors (PARs)";"Senescence-Associated Secretory Phenotype (SASP)";"Negative regulation of FGFR3 signaling";"RHO GTPases Activate NADPH Oxidases";"Negative regulation of MAPK pathway";"Regulation of HSF1-mediated heat shock response";"Oxidative Stress Induced Senescence";"ESR-mediated signaling";"Advanced glycosylation endproduct receptor signaling";"FCERI mediated MAPK activation";"ERKs are inactivated";"NCAM signaling for neurite out-growth";"RAF-independent MAPK1/3 activation";"Negative feedback regulation of MAPK pathway"
JAMg_model_5764.2	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_9993.1	3	Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-112382	"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Formation of RNA Pol II elongation complex"
JAMg_model_6423.1	7	KEGG: 00051+3.1.3.11;MetaCyc: PWY-5484;KEGG: 00680+3.1.3.11;KEGG: 00010+3.1.3.11;KEGG: 00030+3.1.3.11;Reactome: R-HSA-70263;KEGG: 00710+3.1.3.11	"Fructose and mannose metabolism";"Glycolysis II (from fructose 6-phosphate)";"Methane metabolism";"Glycolysis / Gluconeogenesis";"Pentose phosphate pathway";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms"
JAMg_model_1450.2	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_7421.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_4567.2	7	KEGG: 00010+1.2.4.1;KEGG: 00020+1.2.4.1;Reactome: R-HSA-389661;Reactome: R-HSA-70268;KEGG: 00620+1.2.4.1;Reactome: R-HSA-204174;Reactome: R-HSA-5362517	"Glycolysis / Gluconeogenesis";"Citrate cycle (TCA cycle)";"Glyoxylate metabolism and glycine degradation";"Pyruvate metabolism";"Pyruvate metabolism";"Regulation of pyruvate dehydrogenase (PDH) complex";"Signaling by Retinoic Acid"
JAMg_model_14875.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_2132.4	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_16428.1	4	KEGG: 00592+3.1.1.32;MetaCyc: PWY-8051;KEGG: 00564+3.1.1.32;MetaCyc: PWY-6803	"alpha-Linolenic acid metabolism";"Anandamide biosynthesis I";"Glycerophospholipid metabolism";"Phosphatidylcholine acyl editing"
JAMg_model_21029.4	15	Reactome: R-HSA-195253;Reactome: R-HSA-5358749;Reactome: R-HSA-5467333;Reactome: R-HSA-5467337;Reactome: R-HSA-5689896;Reactome: R-HSA-111465;Reactome: R-HSA-5339716;Reactome: R-HSA-5358752;Reactome: R-HSA-5467348;Reactome: R-HSA-5358747;Reactome: R-HSA-3769402;Reactome: R-HSA-4641262;Reactome: R-HSA-5467340;Reactome: R-HSA-5358751;Reactome: R-HSA-196299	"Degradation of beta-catenin by the destruction complex";"S37 mutants of beta-catenin aren't phosphorylated";"APC truncation mutants are not K63 polyubiquitinated";"APC truncation mutants have impaired AXIN binding";"Ovarian tumor domain proteases";"Apoptotic cleavage of cellular proteins";"Misspliced GSK3beta mutants stabilize beta-catenin";"T41 mutants of beta-catenin aren't phosphorylated";"Truncations of AMER1 destabilize the destruction complex";"S33 mutants of beta-catenin aren't phosphorylated";"Deactivation of the beta-catenin transactivating complex";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"AXIN missense mutants destabilize the destruction complex";"S45 mutants of beta-catenin aren't phosphorylated";"Beta-catenin phosphorylation cascade"
JAMg_model_15812.4	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_11240.1	10	KEGG: 00620+1.2.4.1;KEGG: 00250+3.5.1.1;Reactome: R-HSA-5362517;KEGG: 00020+1.2.4.1;Reactome: R-HSA-70268;Reactome: R-HSA-389661;Reactome: R-HSA-8964208;Reactome: R-HSA-204174;KEGG: 00010+1.2.4.1;KEGG: 00460+3.5.1.1	"Pyruvate metabolism";"Alanine, aspartate and glutamate metabolism";"Signaling by Retinoic Acid";"Citrate cycle (TCA cycle)";"Pyruvate metabolism";"Glyoxylate metabolism and glycine degradation";"Phenylalanine metabolism";"Regulation of pyruvate dehydrogenase (PDH) complex";"Glycolysis / Gluconeogenesis";"Cyanoamino acid metabolism"
JAMg_model_13125.1	9	Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-76042;Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-674695	"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_11657.5	2	Reactome: R-HSA-168276;Reactome: R-HSA-1169408	"NS1 Mediated Effects on Host Pathways";"ISG15 antiviral mechanism"
JAMg_model_13323.4	3	Reactome: R-HSA-110330;Reactome: R-HSA-110331;Reactome: R-HSA-110357	"Recognition and association of DNA glycosylase with site containing an affected purine";"Cleavage of the damaged purine";"Displacement of DNA glycosylase by APEX1"
JAMg_model_10973.2	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_11799.1	13	MetaCyc: PWY-7410;MetaCyc: PWY-6383;MetaCyc: PWY-7736;MetaCyc: PWY-7659;MetaCyc: PWY-5123;MetaCyc: PWY-7141;MetaCyc: PWY-5122;MetaCyc: PWY-7102;MetaCyc: PWY-6859;MetaCyc: PWY-7721;MetaCyc: PWY-7709;MetaCyc: PWY-7182;KEGG: 00900+2.5.1.10+2.5.1.1	"Ipsdienol biosynthesis";"Mono-trans, poly-cis decaprenyl phosphate biosynthesis";"Stellatic acid biosynthesis";"Viridicatumtoxin biosynthesis";"Trans, trans-farnesyl diphosphate biosynthesis";"(3S)-linalool biosynthesis";"Geranyl diphosphate biosynthesis";"Bisabolene biosynthesis (engineered)";"All-trans-farnesol biosynthesis";"Methyl phomopsenoate biosynthesis";"(3R)-linalool biosynthesis";"Linalool biosynthesis I";"Terpenoid backbone biosynthesis"
JAMg_model_15364.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_8940.1	5	Reactome: R-HSA-380994;Reactome: R-HSA-8963693;Reactome: R-HSA-9633012;Reactome: R-HSA-9648895;KEGG: 00250+6.3.5.4	"ATF4 activates genes in response to endoplasmic reticulum stress";"Aspartate and asparagine metabolism";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Response of EIF2AK1 (HRI) to heme deficiency";"Alanine, aspartate and glutamate metabolism"
JAMg_model_12041.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_15811.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_7046.1	4	KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219;Reactome: R-HSA-499943;KEGG: 00230+2.7.4.3	"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Interconversion of nucleotide di- and triphosphates";"Purine metabolism"
JAMg_model_6416.1	1	KEGG: 00970+6.3.5.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_17960.1	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_7435.1	9	Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-76042	"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Initiation And Promoter Clearance"
JAMg_model_9122.1	1	Reactome: R-HSA-977443	"GABA receptor activation"
JAMg_model_20397.1	1	KEGG: 00970+6.3.5.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_6221.1	18	Reactome: R-HSA-166208;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-6790901;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"mTORC1-mediated signalling";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"rRNA modification in the nucleus and cytosol";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_9895.2	10	MetaCyc: PWY-6317;MetaCyc: PWY-7344;MetaCyc: PWY-3821;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6527;Reactome: R-HSA-70370;MetaCyc: PWY-6397;Reactome: R-HSA-5609977;MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2	"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis";"D-galactose detoxification";"Galactose metabolism";"Stachyose degradation";"Galactose catabolism";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_16071.6	9	Reactome: R-HSA-445355;Reactome: R-HSA-6802948;Reactome: R-HSA-6802952;Reactome: R-HSA-6802946;Reactome: R-HSA-6802955;Reactome: R-HSA-114608;Reactome: R-HSA-6798695;Reactome: R-HSA-9649948;Reactome: R-HSA-5674135	"Smooth Muscle Contraction";"Signaling by high-kinase activity BRAF mutants";"Signaling by BRAF and RAF fusions";"Signaling by moderate kinase activity BRAF mutants";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Platelet degranulation";"Neutrophil degranulation";"Signaling downstream of RAS mutants";"MAP2K and MAPK activation"
JAMg_model_12627.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_650.1	4	KEGG: 00480+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00270+2.5.1.16;Reactome: R-HSA-351202	"Glutathione metabolism";"Arginine and proline metabolism";"Cysteine and methionine metabolism";"Metabolism of polyamines"
JAMg_model_11907.1	1	Reactome: R-HSA-2151201	"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_1124.6	3	Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-6811438	"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic"
JAMg_model_16705.1	14	MetaCyc: PWY-5981;MetaCyc: PWY-7589;MetaCyc: PWY-8051;MetaCyc: PWY-7587;MetaCyc: PWY-5667;KEGG: 00564+2.3.1.51;MetaCyc: PWY-8053;MetaCyc: PWY-7782;KEGG: 00561+2.3.1.51;MetaCyc: PWY-7411;MetaCyc: PWY-8055;MetaCyc: PWY-6453;Reactome: R-HSA-1483166;MetaCyc: PWY-7417	"CDP-diacylglycerol biosynthesis III";"Palmitoleate biosynthesis III (cyanobacteria)";"Anandamide biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"CDP-diacylglycerol biosynthesis I";"Glycerophospholipid metabolism";"Anandamide biosynthesis II";"Plasmalogen biosynthesis";"Glycerolipid metabolism";"Phosphatidate biosynthesis (yeast)";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis";"Synthesis of PA";"Phospholipid remodeling (phosphatidate, yeast)"
JAMg_model_13528.1	3	Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-6811438	"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic"
JAMg_model_8721.3	3	KEGG: 00531+3.2.1.50;Reactome: R-HSA-2024096;Reactome: R-HSA-2206282	"Glycosaminoglycan degradation";"HS-GAG degradation";"MPS IIIB - Sanfilippo syndrome B"
JAMg_model_961.1	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_14659.3	1	KEGG: 00970+6.3.5.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_2847.2	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_12733.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_9911.2	12	Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-427413;Reactome: R-HSA-73772;Reactome: R-HSA-76061;Reactome: R-HSA-5250924;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-73863;Reactome: R-HSA-73780;Reactome: R-HSA-1834949;Reactome: R-HSA-73762	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"NoRC negatively regulates rRNA expression";"RNA Polymerase I Promoter Escape";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase I Transcription Termination";"RNA Polymerase III Chain Elongation";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase I Transcription Initiation"
JAMg_model_11239.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_18861.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_3952.3	16	Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-975956;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_13365.1	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_12633.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_18188.3	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_1847.1	2	Reactome: R-HSA-163282;Reactome: R-HSA-2151201	"Mitochondrial transcription initiation";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_16427.1	4	KEGG: 00473+5.1.1.1;MetaCyc: PWY-7383;MetaCyc: PWY-8072;MetaCyc: PWY-8040	"D-Alanine metabolism";"Anaerobic energy metabolism (invertebrates, cytosol)";"Alanine racemization";"Ansatrienin biosynthesis"
JAMg_model_3049.1	42	MetaCyc: PWY-1361;KEGG: 00623+1.1.1.35;MetaCyc: PWY-7216;KEGG: 00720+4.2.1.17+1.1.1.35;KEGG: 00930+4.2.1.17+1.1.1.35;MetaCyc: PWY-7779;MetaCyc: PWY-7606;KEGG: 00640+4.2.1.17;KEGG: 00281+4.2.1.17+1.1.1.35;MetaCyc: PWY-6863;MetaCyc: PWY-6946;KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35;MetaCyc: PWY-7094;KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35;MetaCyc: PWY-7778;MetaCyc: PWY-6435;KEGG: 00650+4.2.1.17+1.1.1.35;MetaCyc: PWY-6945;MetaCyc: PWY-7654;KEGG: 00062+4.2.1.17+1.1.1.35;MetaCyc: PWY-5136;KEGG: 00362+4.2.1.17+1.1.1.35;KEGG: 00380+4.2.1.17+1.1.1.35;MetaCyc: PWY-7007;MetaCyc: PWY-6944;KEGG: 00903+4.2.1.17;KEGG: 00592+4.2.1.17;MetaCyc: PWY-7726;MetaCyc: PWY-7401;KEGG: 00071+4.2.1.17+1.1.1.35;MetaCyc: PWY-5109;MetaCyc: PWY-5789;KEGG: 00310+4.2.1.17+1.1.1.35;MetaCyc: PWY-6883;MetaCyc: PWY-7656;KEGG: 00280+4.2.1.17+1.1.1.35;MetaCyc: PWY-6583;MetaCyc: PWY-5177;MetaCyc: PWY-5138;KEGG: 00627+4.2.1.17;KEGG: 00410+4.2.1.17;KEGG: 00360+4.2.1.17	"Benzoyl-coa degradation I (aerobic)";"Toluene degradation";"(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)";"Carbon fixation pathways in prokaryotes";"Caprolactam degradation";"Methyl tert-butyl ether degradation";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Propanoate metabolism";"Geraniol degradation";"Pyruvate fermentation to hexanol (engineered)";"Cholesterol degradation to androstenedione II (cholesterol dehydrogenase)";"Fatty acid degradation";"Fatty acid salvage";"Butanoate metabolism";"2-methylpropene degradation";"4-hydroxybenzoate biosynthesis III (plants)";"Butanoate metabolism";"Cholesterol degradation to androstenedione I (cholesterol oxidase)";"(8E,10E)-dodeca-8,10-dienol biosynthesis";"Fatty acid elongation";"Fatty acid beta-oxidation II (plant peroxisome)";"Benzoate degradation";"Tryptophan metabolism";"Methyl ketone biosynthesis (engineered)";"Androstenedione degradation";"Limonene and pinene degradation";"alpha-Linolenic acid metabolism";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Crotonate fermentation (to acetate and cyclohexane carboxylate)";"Fatty acid degradation";"Fermentation to 2-methylbutanoate";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Lysine degradation";"Pyruvate fermentation to butanol II (engineered)";"Spodoptera littoralis pheromone biosynthesis";"Valine, leucine and isoleucine degradation";"Pyruvate fermentation to butanol I";"Glutaryl-coa degradation";"Fatty acid beta-oxidation IV (unsaturated, even number)";"Aminobenzoate degradation";"beta-Alanine metabolism";"Phenylalanine metabolism"
JAMg_model_10512.3	10	MetaCyc: PWY-8001;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-5826;KEGG: 00430+2.3.2.2;MetaCyc: PWY-4061;KEGG: 00460+2.3.2.2;MetaCyc: PWY-7112;MetaCyc: PWY-4041;MetaCyc: PWY-7559;MetaCyc: PWY-6842	"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Glutathione metabolism";"Hypoglycin biosynthesis";"Taurine and hypotaurine metabolism";"Glutathione-mediated detoxification I";"Cyanoamino acid metabolism";"4-hydroxy-2-nonenal detoxification";"Gamma-glutamyl cycle";"Glutathione degradation (DUG pathway";"Glutathione-mediated detoxification II"
JAMg_model_16208.3	5	Reactome: R-HSA-75105;Reactome: R-HSA-2426168;Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-9029558	"Fatty acyl-CoA biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_4462.2	2	Reactome: R-HSA-2151201;Reactome: R-HSA-8964539	"Transcriptional activation of mitochondrial biogenesis";"Glutamate and glutamine metabolism"
JAMg_model_4438.1	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_4198.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_12391.2	7	MetaCyc: PWY-6351;MetaCyc: PWY-7625;KEGG: 00564+2.7.8.11;Reactome: R-HSA-1483226;MetaCyc: PWY-6352;KEGG: 04070+2.7.8.11;KEGG: 00562+2.7.8.11	"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Phosphatidylinositol biosynthesis II (eukaryotes)";"Glycerophospholipid metabolism";"Synthesis of PI";"3-phosphoinositide biosynthesis";"Phosphatidylinositol signaling system";"Inositol phosphate metabolism"
JAMg_model_11200.1	1	KEGG: 00970+6.1.1.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_4356.4	3	KEGG: 00510+2.4.1.265;Reactome: R-HSA-446193;Reactome: R-HSA-4724325	"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG8 causes ALG8-CDG (CDG-1h)"
JAMg_model_8838.1	5	MetaCyc: PWY-5667;KEGG: 00564+2.7.7.41;MetaCyc: PWY-7817;MetaCyc: PWY-5981;KEGG: 04070+2.7.7.41	"CDP-diacylglycerol biosynthesis I";"Glycerophospholipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)";"CDP-diacylglycerol biosynthesis III";"Phosphatidylinositol signaling system"
JAMg_model_11456.1	7	Reactome: R-HSA-8951664;Reactome: R-HSA-6781823;Reactome: R-HSA-6782210;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;MetaCyc: PWY-7511;Reactome: R-HSA-72163	"Neddylation";"Formation of TC-NER Pre-Incision Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Protein ubiquitination";"mRNA Splicing - Major Pathway"
JAMg_model_6151.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_20950.2	1	Reactome: R-HSA-6803204	"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release"
JAMg_model_12392.1	1	KEGG: 00970+6.1.1.20	"Aminoacyl-tRNA biosynthesis"
JAMg_model_5406.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5045.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19514.1	4	Reactome: R-HSA-8964539;KEGG: 00332+1.2.1.41;KEGG: 00330+1.2.1.41;MetaCyc: PWY-6922	"Glutamate and glutamine metabolism";"Carbapenem biosynthesis";"Arginine and proline metabolism";"L-Ndelta-acetylornithine biosynthesis"
JAMg_model_16921.1	56	Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949	"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin"
JAMg_model_12705.3	2	Reactome: R-HSA-3214847;Reactome: R-HSA-6804758	"HATs acetylate histones";"Regulation of TP53 Activity through Acetylation"
JAMg_model_10755.1	4	MetaCyc: PWY-7807;Reactome: R-HSA-71737;MetaCyc: PWY-7805;KEGG: 00190+3.6.1.1	"Glyphosate degradation III";"Pyrophosphate hydrolysis";"(aminomethyl)phosphonate degradation";"Oxidative phosphorylation"
JAMg_model_3398.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_16399.2	4	Reactome: R-HSA-9010553;Reactome: R-HSA-975956;Reactome: R-HSA-72764;Reactome: R-HSA-975957	"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Eukaryotic Translation Termination";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_18654.1	10	KEGG: 00531+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00511+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00052+3.2.1.23;Reactome: R-HSA-2024096;Reactome: R-HSA-2206292;MetaCyc: PWY-6807;Reactome: R-HSA-2160916	"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Other glycan degradation";"Neutrophil degranulation";"Galactose metabolism";"HS-GAG degradation";"MPS VII - Sly syndrome";"Xyloglucan degradation II (exoglucanase)";"Hyaluronan uptake and degradation"
JAMg_model_16855.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_20624.1	3	Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.25;Reactome: R-HSA-6798695	"Lysosomal oligosaccharide catabolism";"Other glycan degradation";"Neutrophil degranulation"
JAMg_model_2644.1	1	Reactome: R-HSA-8866654	"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_17966.1	1	Reactome: R-HSA-1655829	"Regulation of cholesterol biosynthesis by SREBP (SREBF)"
JAMg_model_5574.1	2	Reactome: R-HSA-4641265;Reactome: R-HSA-5339700	"Repression of WNT target genes";"TCF7L2 mutants don't bind CTBP"
JAMg_model_481.2	11	MetaCyc: PWY-6549;Reactome: R-HSA-71403;MetaCyc: PWY-5913;KEGG: 00020+1.1.1.42;MetaCyc: PWY-6969;KEGG: 00720+1.1.1.42;MetaCyc: PWY-7254;MetaCyc: PWY-7124;KEGG: 00480+1.1.1.42;MetaCyc: PWY-6728;MetaCyc: PWY-7268	"L-glutamine biosynthesis III";"Citric acid cycle (TCA cycle)";"Partial TCA cycle (obligate autotrophs)";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Carbon fixation pathways in prokaryotes";"TCA cycle VII (acetate-producers)";"Ethylene biosynthesis V (engineered)";"Glutathione metabolism";"Methylaspartate cycle";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)"
JAMg_model_10417.1	1	Reactome: R-HSA-2470946	"Cohesin Loading onto Chromatin"
JAMg_model_1190.2	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_1359.5	12	KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;KEGG: 04714+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1	"Human cytomegalovirus infection";"DCC mediated attractive signaling";"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"G alpha (q) signalling events";"NRAGE signals death through JNK";"Thermogenesis";"Rho GTPase cycle";"Human papillomavirus infection"
JAMg_model_1675.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_3221.1	3	Reactome: R-HSA-74259;Reactome: R-HSA-73621;Reactome: R-HSA-196807	"Purine catabolism";"Pyrimidine catabolism";"Nicotinate metabolism"
JAMg_model_16997.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_20230.4	1	KEGG: 00480+3.4.11.1	"Glutathione metabolism"
JAMg_model_2610.1	5	Reactome: R-HSA-389957;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-389960;Reactome: R-HSA-6814122	"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_7037.1	1	Reactome: R-HSA-4419969	"Depolymerisation of the Nuclear Lamina"
JAMg_model_6263.1	1	Reactome: R-HSA-1614517	"Sulfide oxidation to sulfate"
JAMg_model_16444.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_13242.4	7	Reactome: R-HSA-8964539;Reactome: R-HSA-5628897;KEGG: 00250+3.5.1.2;Reactome: R-HSA-210500;MetaCyc: PWY-5921;KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2	"Glutamate and glutamine metabolism";"TP53 Regulates Metabolic Genes";"Alanine, aspartate and glutamate metabolism";"Glutamate Neurotransmitter Release Cycle";"Glutaminyl-trnagln biosynthesis via transamidation";"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism"
JAMg_model_10797.7	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_1821.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_18910.1	1	Reactome: R-HSA-2142789	"Ubiquinol biosynthesis"
JAMg_model_7588.1	1	Reactome: R-HSA-1237044	"Erythrocytes take up carbon dioxide and release oxygen"
JAMg_model_18324.1	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_6599.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_4015.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-8964038	"Neutrophil degranulation";"LDL clearance"
JAMg_model_19162.2	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_20984.1	4	Reactome: R-HSA-5576892;Reactome: R-HSA-112308;Reactome: R-HSA-419037;Reactome: R-HSA-5576893	"Phase 0 - rapid depolarisation";"Presynaptic depolarization and calcium channel opening";"NCAM1 interactions";"Phase 2 - plateau phase"
JAMg_model_10036.2	4	Reactome: R-HSA-446193;KEGG: 00510+2.4.1.258;KEGG: 00513+2.4.1.258;Reactome: R-HSA-4720475	"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"N-Glycan biosynthesis";"Various types of N-glycan biosynthesis";"Defective ALG3 causes ALG3-CDG (CDG-1d)"
JAMg_model_19141.1	1	Reactome: R-HSA-6814848	"Glycerophospholipid catabolism"
JAMg_model_14808.2	1	Reactome: R-HSA-525793	"Myogenesis"
JAMg_model_9889.3	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_4961.2	5	Reactome: R-HSA-8875360;Reactome: R-HSA-6807004;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825;Reactome: R-HSA-182971	"InlB-mediated entry of Listeria monocytogenes into host cell";"Negative regulation of MET activity";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis";"EGFR downregulation"
JAMg_model_18250.1	57	Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783	"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome"
JAMg_model_1808.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_650.8	4	KEGG: 00480+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00270+2.5.1.16;Reactome: R-HSA-351202	"Glutathione metabolism";"Arginine and proline metabolism";"Cysteine and methionine metabolism";"Metabolism of polyamines"
JAMg_model_11532.1	20	KEGG: 05163+2.7.11.1;Reactome: R-HSA-5628897;Reactome: R-HSA-389357;KEGG: 05170+2.7.11.1;Reactome: R-HSA-8943724;Reactome: R-HSA-3371571;Reactome: R-HSA-5218920;Reactome: R-HSA-165159;Reactome: R-HSA-5674400;Reactome: R-HSA-380972;KEGG: 04714+2.7.11.1;Reactome: R-HSA-6804757;Reactome: R-HSA-1257604;Reactome: R-HSA-9639288;Reactome: R-HSA-1632852;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-166208	"Human cytomegalovirus infection";"TP53 Regulates Metabolic Genes";"CD28 dependent PI3K/Akt signaling";"Human immunodeficiency virus 1 infection";"Regulation of PTEN gene transcription";"HSF1-dependent transactivation";"VEGFR2 mediated vascular permeability";"mTOR signalling";"Constitutive Signaling by AKT1 E17K in Cancer";"Energy dependent regulation of mTOR by LKB1-AMPK";"Thermogenesis";"Regulation of TP53 Degradation";"PIP3 activates AKT signaling";"Amino acids regulate mTORC1";"Macroautophagy";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"Human papillomavirus infection";"mTORC1-mediated signalling"
JAMg_model_14451.1	2	Reactome: R-HSA-400253;Reactome: R-HSA-2151201	"Circadian Clock";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_5331.1	1	Reactome: R-HSA-420499	"Class C/3 (Metabotropic glutamate/pheromone receptors)"
JAMg_model_14443.3	2	Reactome: R-HSA-6798695;Reactome: R-HSA-8964038	"Neutrophil degranulation";"LDL clearance"
JAMg_model_7362.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_8984.1	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_1151.5	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_13363.2	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_19454.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10818.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_17128.1	14	MetaCyc: PWY-8041;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7619;KEGG: 00062+2.3.1.199;MetaCyc: PWY-5972;MetaCyc: PWY-7035;Reactome: R-HSA-75876;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7725;MetaCyc: PWY-5080	"Ultra-long-chain fatty acid biosynthesis";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Juniperonate biosynthesis";"Fatty acid elongation";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis I"
JAMg_model_8900.1	2	Reactome: R-HSA-1268020;Reactome: R-HSA-71403	"Mitochondrial protein import";"Citric acid cycle (TCA cycle)"
JAMg_model_20605.1	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_2856.1	2	Reactome: R-HSA-70895;KEGG: 00280+1.1.1.31	"Branched-chain amino acid catabolism";"Valine, leucine and isoleucine degradation"
JAMg_model_1622.1	31	MetaCyc: PWYG-321;MetaCyc: PWY-5367;MetaCyc: PWY-7746;MetaCyc: PWY-5994;Reactome: R-HSA-199220;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWY-5366;MetaCyc: PWY-7388;MetaCyc: PWY-7723;MetaCyc: PWY-7663;MetaCyc: PWY-5971;MetaCyc: PWY-8047;MetaCyc: PWY-7858;MetaCyc: PWY-8049;Reactome: R-HSA-163765;MetaCyc: PWY-5142;MetaCyc: PWY-5989;MetaCyc: PWY-5147;Reactome: R-HSA-9029558;MetaCyc: PWY-5966-1;MetaCyc: PWY-7664;MetaCyc: PWY-5973;Reactome: R-HSA-75105;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-6113;MetaCyc: PWY-6282;MetaCyc: PWY-4381;Reactome: R-HSA-2426168;MetaCyc: PWY-6519;MetaCyc: PWY-8012;MetaCyc: PWY-6799	"";"Petroselinate biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Vitamin B5 (pantothenate) metabolism";"Fatty acid biosynthesis";"Palmitoleate biosynthesis II (plants and bacteria)";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Bacterial bioluminescence";"Gondoate biosynthesis (anaerobic)";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Bryostatin biosynthesis";"(5Z)-dodecenoate biosynthesis II";"Pederin biosynthesis";"ChREBP activates metabolic gene expression";"Acyl-[acyl-carrier protein] thioesterase pathway";"Stearate biosynthesis II (bacteria and plants)";"Oleate biosynthesis I (plants)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Oleate biosynthesis IV (anaerobic)";"Cis-vaccenate biosynthesis";"Fatty acyl-CoA biosynthesis";"Biotin metabolism";"Superpathway of mycolate biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Fatty acid biosynthesis initiation (bacteria and plants)";"Activation of gene expression by SREBF (SREBP)";"8-amino-7-oxononanoate biosynthesis I";"Mupirocin biosynthesis";"Fatty acid biosynthesis initiation (plant mitochondria)"
JAMg_model_8702.6	1	Reactome: R-HSA-425986	"Sodium/Proton exchangers"
JAMg_model_1290.2	56	Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785	"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome"
JAMg_model_12664.2	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_16232.4	4	Reactome: R-HSA-156581;KEGG: 00270+2.5.1.6;MetaCyc: PWY-5041;MetaCyc: PWY-5912	"Methylation";"Cysteine and methionine metabolism";"S-adenosyl-L-methionine cycle II";"2'-deoxymugineic acid phytosiderophore biosynthesis"
JAMg_model_8876.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_6600.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_16393.3	4	KEGG: 00410+4.1.1.9;Reactome: R-HSA-9033241;Reactome: R-HSA-390247;KEGG: 00640+4.1.1.9	"beta-Alanine metabolism";"Peroxisomal protein import";"Beta-oxidation of very long chain fatty acids";"Propanoate metabolism"
JAMg_model_13528.2	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878	"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport"
JAMg_model_17316.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_15812.1	2	Reactome: R-HSA-983168;Reactome: R-HSA-8951664	"Antigen processing: Ubiquitination & Proteasome degradation";"Neddylation"
JAMg_model_3851.1	1	Reactome: R-HSA-376172	"DSCAM interactions"
JAMg_model_1770.4	2	Reactome: R-HSA-5576893;Reactome: R-HSA-5576892	"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation"
JAMg_model_4160.4	4	Reactome: R-HSA-8951664;Reactome: R-HSA-6781823;Reactome: R-HSA-5696394;Reactome: R-HSA-8856825	"Neddylation";"Formation of TC-NER Pre-Incision Complex";"DNA Damage Recognition in GG-NER";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_15760.1	33	Reactome: R-HSA-159236;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-5663220;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-170822;Reactome: R-HSA-68877;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-159230;Reactome: R-HSA-3371453;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-4551638;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-159227;Reactome: R-HSA-168276;Reactome: R-HSA-168333;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-1169408;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-2467813	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"RHO GTPases Activate Formins";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Mitotic Prometaphase";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Transport of the SLBP Dependant Mature mRNA";"Regulation of HSF1-mediated heat shock response";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"SUMOylation of chromatin organization proteins";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"Transport of the SLBP independent Mature mRNA";"NS1 Mediated Effects on Host Pathways";"NEP/NS2 Interacts with the Cellular Export Machinery";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"ISG15 antiviral mechanism";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Separation of Sister Chromatids"
JAMg_model_14776.1	2	Reactome: R-HSA-909733;Reactome: R-HSA-8983711	"Interferon alpha/beta signaling";"OAS antiviral response"
JAMg_model_5785.1	7	Reactome: R-HSA-5620922;Reactome: R-HSA-389960;Reactome: R-HSA-6814122;Reactome: R-HSA-390450;Reactome: R-HSA-390471;Reactome: R-HSA-389957;Reactome: R-HSA-6798695	"BBSome-mediated cargo-targeting to cilium";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Folding of actin by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Prefoldin mediated transfer of substrate to CCT/TriC";"Neutrophil degranulation"
JAMg_model_6932.1	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_17488.1	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_8361.1	1	Reactome: R-HSA-5223345	"Miscellaneous transport and binding events"
JAMg_model_1546.1	1	Reactome: R-HSA-433137	"Sodium-coupled sulphate, di- and tri-carboxylate transporters"
JAMg_model_17322.2	1	Reactome: R-HSA-140342	"Apoptosis induced DNA fragmentation"
JAMg_model_10134.1	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_14363.1	2	Reactome: R-HSA-210745;Reactome: R-HSA-383280	"Regulation of gene expression in beta cells";"Nuclear Receptor transcription pathway"
JAMg_model_2030.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_4485.6	4	Reactome: R-HSA-3214847;KEGG: 00514+2.4.1.255;MetaCyc: PWY-7437;Reactome: R-HSA-5689603	"HATs acetylate histones";"Other types of O-glycan biosynthesis";"Protein O-[N-acetyl]-glucosylation";"UCH proteinases"
JAMg_model_9631.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_15208.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_997.5	2	MetaCyc: PWY-6829;Reactome: R-HSA-6782315	"Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol"
JAMg_model_13036.1	1	Reactome: R-HSA-418594	"G alpha (i) signalling events"
JAMg_model_11098.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_8131.1	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_21161.6	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_18624.4	13	Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957	"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_2848.3	12	KEGG: 00720+6.2.1.5;MetaCyc: PWY-5537;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5392;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-6728;MetaCyc: PWY-7384;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-5538	"Carbon fixation pathways in prokaryotes";"Pyruvate fermentation to acetate V";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Reductive TCA cycle II";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Pyruvate fermentation to acetate VI"
JAMg_model_15421.1	2	Reactome: R-HSA-189085;KEGG: 00500+3.2.1.28	"Digestion of dietary carbohydrate";"Starch and sucrose metabolism"
JAMg_model_5882.1	26	Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-389977;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-983189;Reactome: R-HSA-389960;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736	"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Post-chaperonin tubulin folding pathway";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Kinesins";"Formation of tubulin folding intermediates by CCT/TriC";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors"
JAMg_model_1192.2	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_19843.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_8910.10	2	Reactome: R-HSA-379716;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism"
JAMg_model_5088.7	16	MetaCyc: PWY-5484;MetaCyc: PWY-6886;MetaCyc: PWY-1622;MetaCyc: PWY-8004;Reactome: R-HSA-70263;MetaCyc: PWY-5723;Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00680+4.2.1.11;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-7218;MetaCyc: PWY-7124;MetaCyc: PWY-2221;MetaCyc: PWY-6142;KEGG: 00010+4.2.1.11	"Glycolysis II (from fructose 6-phosphate)";"1-butanol autotrophic biosynthesis (engineered)";"Formaldehyde assimilation I (serine pathway)";"Entner-Doudoroff pathway I";"Gluconeogenesis";"Rubisco shunt";"Glycolysis";"Glycerol degradation to butanol";"Methane metabolism";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Ethylene biosynthesis V (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis / Gluconeogenesis"
JAMg_model_19799.2	5	Reactome: R-HSA-983170;Reactome: R-HSA-5694530;Reactome: R-HSA-204005;Reactome: R-HSA-2132295;Reactome: R-HSA-1655829	"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Cargo concentration in the ER";"COPII-mediated vesicle transport";"MHC class II antigen presentation";"Regulation of cholesterol biosynthesis by SREBP (SREBF)"
JAMg_model_182.1	3	Reactome: R-HSA-112382;Reactome: R-HSA-674695;Reactome: R-HSA-75955	"Formation of RNA Pol II elongation complex";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation"
JAMg_model_13756.2	7	Reactome: R-HSA-212436;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-381340;Reactome: R-HSA-2173796;Reactome: R-HSA-2644606;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"Transcriptional regulation of white adipocyte differentiation";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"PPARA activates gene expression"
JAMg_model_9293.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_4298.1	8	MetaCyc: PWY-8086;KEGG: 00620+1.1.1.27;KEGG: 00010+1.1.1.27;Reactome: R-HSA-70268;MetaCyc: PWY-5481;KEGG: 00270+1.1.1.27;MetaCyc: PWY-6901;KEGG: 00640+1.1.1.27	"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Pyruvate metabolism";"Glycolysis / Gluconeogenesis";"Pyruvate metabolism";"Pyruvate fermentation to (S)-lactate";"Cysteine and methionine metabolism";"Superpathway of glucose and xylose degradation";"Propanoate metabolism"
JAMg_model_21055.1	2	Reactome: R-HSA-936837;Reactome: R-HSA-6798695	"Ion transport by P-type ATPases";"Neutrophil degranulation"
JAMg_model_4808.5	2	Reactome: R-HSA-5689880;Reactome: R-HSA-8949215	"Ub-specific processing proteases";"Mitochondrial calcium ion transport"
JAMg_model_138.2	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_11685.4	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_14468.1	18	MetaCyc: PWY-7417;MetaCyc: PWY-7416;Reactome: R-HSA-1482925;Reactome: R-HSA-1482922;KEGG: 00564+3.1.1.4;MetaCyc: PWY-8051;Reactome: R-HSA-1482788;KEGG: 00592+3.1.1.4;KEGG: 00565+3.1.1.4;Reactome: R-HSA-1483166;Reactome: R-HSA-1482839;Reactome: R-HSA-1482801;MetaCyc: PWY-6803;MetaCyc: PWY-7409;KEGG: 00590+3.1.1.4;MetaCyc: PWY-8053;KEGG: 00591+3.1.1.4;MetaCyc: PWY-7783	"Phospholipid remodeling (phosphatidate, yeast)";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Acyl chain remodelling of PG";"Acyl chain remodelling of PI";"Glycerophospholipid metabolism";"Anandamide biosynthesis I";"Acyl chain remodelling of PC";"alpha-Linolenic acid metabolism";"Ether lipid metabolism";"Synthesis of PA";"Acyl chain remodelling of PE";"Acyl chain remodelling of PS";"Phosphatidylcholine acyl editing";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Arachidonic acid metabolism";"Anandamide biosynthesis II";"Linoleic acid metabolism";"Plasmalogen degradation"
JAMg_model_10807.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_15933.1	1	KEGG: 00270+2.1.1.37	"Cysteine and methionine metabolism"
JAMg_model_14261.3	3	KEGG: 00790+6.3.2.17;Reactome: R-HSA-196757;MetaCyc: PWY-2161	"Folate biosynthesis";"Metabolism of folate and pterines";"Folate polyglutamylation"
JAMg_model_2002.2	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_14338.6	5	KEGG: 00531+3.1.6.14;Reactome: R-HSA-432720;Reactome: R-HSA-6798695;Reactome: R-HSA-2022857;Reactome: R-HSA-2206305	"Glycosaminoglycan degradation";"Lysosome Vesicle Biogenesis";"Neutrophil degranulation";"Keratan sulfate degradation";"MPS IIID - Sanfilippo syndrome D"
JAMg_model_4758.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_2347.1	3	Reactome: R-HSA-429947;Reactome: R-HSA-5617472;Reactome: R-HSA-6804115	"Deadenylation of mRNA";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain"
JAMg_model_5924.1	3	Reactome: R-HSA-8951664;MetaCyc: PWY-7511;Reactome: R-HSA-349425	"Neddylation";"Protein ubiquitination";"Autodegradation of the E3 ubiquitin ligase COP1"
JAMg_model_5874.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_13326.1	2	Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_583.6	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_9047.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_16589.3	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_10135.1	4	Reactome: R-HSA-8856825;Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-5696394	"Cargo recognition for clathrin-mediated endocytosis";"Formation of TC-NER Pre-Incision Complex";"Neddylation";"DNA Damage Recognition in GG-NER"
JAMg_model_8175.1	1	Reactome: R-HSA-9616222	"Transcriptional regulation of granulopoiesis"
JAMg_model_8885.6	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_8992.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_10975.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-6811436	"RAB GEFs exchange GTP for GDP on RABs";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_7836.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_20857.3	14	MetaCyc: PWY-5078;MetaCyc: PWY-5104;MetaCyc: PWY-7767;KEGG: 00290+2.6.1.42;Reactome: R-HSA-70895;KEGG: 00280+2.6.1.42;KEGG: 00770+2.6.1.42;MetaCyc: PWY-5057;MetaCyc: PWY-5076;MetaCyc: PWY-5108;MetaCyc: PWY-5101;KEGG: 00270+2.6.1.42;KEGG: 00966+2.6.1.42;MetaCyc: PWY-5103	"L-isoleucine degradation II";"L-isoleucine biosynthesis IV";"L-leucine degradation IV (Stickland reaction)";"Valine, leucine and isoleucine biosynthesis";"Branched-chain amino acid catabolism";"Valine, leucine and isoleucine degradation";"Pantothenate and CoA biosynthesis";"L-valine degradation II";"L-leucine degradation III";"L-isoleucine biosynthesis V";"L-isoleucine biosynthesis II";"Cysteine and methionine metabolism";"Glucosinolate biosynthesis";"L-isoleucine biosynthesis III"
JAMg_model_4930.2	6	Reactome: R-HSA-163210;KEGG: 00190+7.1.2.2;Reactome: R-HSA-1268020;MetaCyc: PWY-7980;Reactome: R-HSA-8949613;KEGG: 00195+7.1.2.2	"Formation of ATP by chemiosmotic coupling";"Oxidative phosphorylation";"Mitochondrial protein import";"ATP biosynthesis";"Cristae formation";"Photosynthesis"
JAMg_model_21104.1	57	Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695	"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"UCH proteinases";"FCERI mediated NF-kB activation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation"
JAMg_model_13397.6	7	MetaCyc: PWY-3385;MetaCyc: PWY-7782;Reactome: R-HSA-1483191;MetaCyc: PWY-7886;Reactome: R-HSA-1483213;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7818	"Choline biosynthesis I";"Plasmalogen biosynthesis";"Synthesis of PC";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis";"Synthesis of PE";"Glycerophospholipid metabolism";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)"
JAMg_model_5302.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_3963.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_16858.3	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_2592.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_14765.3	3	Reactome: R-HSA-4419969;Reactome: R-HSA-2995383;Reactome: R-HSA-2980766	"Depolymerisation of the Nuclear Lamina";"Initiation of Nuclear Envelope Reformation";"Nuclear Envelope Breakdown"
JAMg_model_13790.1	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706	"Peptide chain elongation";"Viral mRNA Translation";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_16856.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_11704.4	7	Reactome: R-HSA-73817;KEGG: 00250+2.4.2.14;MetaCyc: PWY-7282;MetaCyc: PWY-6121;MetaCyc: PWY-6122;MetaCyc: PWY-6277;KEGG: 00230+2.4.2.14	"Purine ribonucleoside monophosphate biosynthesis";"Alanine, aspartate and glutamate metabolism";"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis I";"5-aminoimidazole ribonucleotide biosynthesis II";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"Purine metabolism"
JAMg_model_13255.2	7	Reactome: R-HSA-1221632;Reactome: R-HSA-110328;Reactome: R-HSA-2559586;Reactome: R-HSA-110329;Reactome: R-HSA-110331;Reactome: R-HSA-171306;Reactome: R-HSA-110330	"Meiotic synapsis";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"DNA Damage/Telomere Stress Induced Senescence";"Cleavage of the damaged pyrimidine";"Cleavage of the damaged purine";"Packaging Of Telomere Ends";"Recognition and association of DNA glycosylase with site containing an affected purine"
JAMg_model_1364.3	1	Reactome: R-HSA-1483101	"Synthesis of PS"
JAMg_model_13068.3	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_15725.2	1	KEGG: 00450+1.8.1.9	"Selenocompound metabolism"
JAMg_model_16050.1	6	MetaCyc: PWY-7900;KEGG: 00500+2.4.1.18;KEGG: 00500+3.2.1.1;Reactome: R-HSA-189085;MetaCyc: PWY-5067;MetaCyc: PWY-622	"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)";"Starch and sucrose metabolism";"Starch and sucrose metabolism";"Digestion of dietary carbohydrate";"Glycogen biosynthesis II (from UDP-D-Glucose)";"Starch biosynthesis"
JAMg_model_10246.1	13	Reactome: R-HSA-2160916;KEGG: 00603+3.2.1.52;KEGG: 00604+3.2.1.52;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;KEGG: 00511+3.2.1.52;KEGG: 00520+3.2.1.52;Reactome: R-HSA-1660662;KEGG: 00513+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-2024101;Reactome: R-HSA-2022857	"Hyaluronan uptake and degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Glycosphingolipid biosynthesis - ganglio series";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Other glycan degradation";"Amino sugar and nucleotide sugar metabolism";"Glycosphingolipid metabolism";"Various types of N-glycan biosynthesis";"Anhydromuropeptides recycling II";"CS/DS degradation";"Keratan sulfate degradation"
JAMg_model_8834.2	10	Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-674695;Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-76042;MetaCyc: PWY-7511;Reactome: R-HSA-73779;Reactome: R-HSA-75953	"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Pre-transcription Events";"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Protein ubiquitination";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation"
JAMg_model_1970.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_15419.2	5	Reactome: R-HSA-9615710;Reactome: R-HSA-917729;Reactome: R-HSA-162588;Reactome: R-HSA-9610379;Reactome: R-HSA-174490	"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Budding and maturation of HIV virion";"HCMV Late Events";"Membrane binding and targetting of GAG proteins"
JAMg_model_4428.1	27	Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-4570464;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-3232142;Reactome: R-HSA-159230;Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-168333;Reactome: R-HSA-5619107;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-9609690;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-6784531;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-4085377;Reactome: R-HSA-4551638;Reactome: R-HSA-159236	"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"SUMOylation of RNA binding proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"SUMOylation of ubiquitinylation proteins";"Transport of the SLBP Dependant Mature mRNA";"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"NEP/NS2 Interacts with the Cellular Export Machinery";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"HCMV Early Events";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"tRNA processing in the nucleus";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_7739.3	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_8698.2	22	MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-7725;MetaCyc: PWY-7592;MetaCyc: PWY-7728;MetaCyc: PWY-7619;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-7053;KEGG: 00062+4.2.1.134;MetaCyc: PWY-5080;MetaCyc: PWY-7049;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7727;MetaCyc: PWY-5353;MetaCyc: PWY-7035;MetaCyc: PWY-7726;MetaCyc: PWY-7606;MetaCyc: PWY-6958	"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Arachidonate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Juniperonate biosynthesis";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Docosahexaenoate biosynthesis I (lower eukaryotes)";"Fatty acid elongation";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"(9Z)-tricosene biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Icosapentaenoate biosynthesis I (lower eukaryotes)"
JAMg_model_17269.6	3	MetaCyc: PWY-8106;Reactome: R-HSA-6782315;MetaCyc: PWY-6700	"Queuosine biosynthesis III (queuosine salvage)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis I (de novo)"
JAMg_model_11252.9	9	KEGG: 00564+1.1.1.94;KEGG: 00564+1.1.1.8;MetaCyc: PWY-7411;Reactome: R-HSA-1483166;MetaCyc: PWY-7385;MetaCyc: PWY-7902;MetaCyc: PWY-5667;MetaCyc: PWY-6118;MetaCyc: PWY-5981	"Glycerophospholipid metabolism";"Glycerophospholipid metabolism";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"1,3-propanediol biosynthesis (engineered)";"Glucosylglycerol biosynthesis";"CDP-diacylglycerol biosynthesis I";"Glycerol-3-phosphate shuttle";"CDP-diacylglycerol biosynthesis III"
JAMg_model_9901.1	29	Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-77075;Reactome: R-HSA-167246;Reactome: R-HSA-167158;Reactome: R-HSA-167172;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-6781823;Reactome: R-HSA-76042;Reactome: R-HSA-73863;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72086;Reactome: R-HSA-5696400;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-73772;Reactome: R-HSA-674695;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-427413;Reactome: R-HSA-167160;Reactome: R-HSA-167200;Reactome: R-HSA-5696395;Reactome: R-HSA-6796648;Reactome: R-HSA-73762;Reactome: R-HSA-112382;Reactome: R-HSA-75953	"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"RNA Pol II CTD phosphorylation and interaction with CE";"Tat-mediated elongation of the HIV-1 transcript";"Formation of the HIV-1 Early Elongation Complex";"Transcription of the HIV genome";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase I Transcription Termination";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"mRNA Capping";"Dual Incision in GG-NER";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Pre-transcription Events";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Formation of Incision Complex in GG-NER";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase I Transcription Initiation";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Initiation"
JAMg_model_14759.1	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-5620912	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane"
JAMg_model_7774.2	1	Reactome: R-HSA-5663220	"RHO GTPases Activate Formins"
JAMg_model_2777.4	14	Reactome: R-HSA-426496;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-426486;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-203927	"Post-transcriptional silencing by small RNAs";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Small interfering RNA (siRNA) biogenesis";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"MicroRNA (miRNA) biogenesis"
JAMg_model_10622.2	7	Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_17345.2	27	Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-168333;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-3232142;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-4570464;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-159231;Reactome: R-HSA-3301854	"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of ubiquitinylation proteins";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of RNA binding proteins";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly"
JAMg_model_7521.4	2	Reactome: R-HSA-2564830;Reactome: R-HSA-5693554	"Cytosolic iron-sulfur cluster assembly";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_7201.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_1629.2	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_577.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_5028.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10689.3	6	Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-6791226;Reactome: R-HSA-450513;Reactome: R-HSA-380994;Reactome: R-HSA-450385	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Major pathway of rRNA processing in the nucleolus and cytosol";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA"
JAMg_model_7728.1	2	Reactome: R-HSA-8949664;Reactome: R-HSA-8949215	"Processing of SMDT1";"Mitochondrial calcium ion transport"
JAMg_model_7423.2	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_5587.6	2	Reactome: R-HSA-6807878;Reactome: R-HSA-445095	"COPI-mediated anterograde transport";"Interaction between L1 and Ankyrins"
JAMg_model_14104.2	2	Reactome: R-HSA-72165;Reactome: R-HSA-72163	"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway"
JAMg_model_14412.1	10	MetaCyc: PWY-1861;KEGG: 00680+2.7.1.11;KEGG: 00051+2.7.1.11;Reactome: R-HSA-70171;KEGG: 00030+2.7.1.11;MetaCyc: PWY-7385;KEGG: 00052+2.7.1.11;KEGG: 00010+2.7.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-1042	"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Methane metabolism";"Fructose and mannose metabolism";"Glycolysis";"Pentose phosphate pathway";"1,3-propanediol biosynthesis (engineered)";"Galactose metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)"
JAMg_model_10875.1	6	KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463	"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis"
JAMg_model_9488.2	1	Reactome: R-HSA-204626	"Hypusine synthesis from eIF5A-lysine"
JAMg_model_135.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_17775.3	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_12974.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10003.1	9	KEGG: 04070+3.1.4.11;Reactome: R-HSA-112043;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6367;Reactome: R-HSA-1855204;MetaCyc: PWY-7039;Reactome: R-HSA-416476;MetaCyc: PWY-6351;MetaCyc: PWY-8052	"Phosphatidylinositol signaling system";"PLC beta mediated events";"Inositol phosphate metabolism";"D-myo-inositol-5-phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"Phosphatidate metabolism, as a signaling molecule";"G alpha (q) signalling events";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis"
JAMg_model_10808.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_14279.1	1	Reactome: R-HSA-5389840	"Mitochondrial translation elongation"
JAMg_model_8701.3	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_8653.2	3	Reactome: R-HSA-6787639;Reactome: R-HSA-727802;Reactome: R-HSA-5619078	"GDP-fucose biosynthesis";"Transport of nucleotide sugars";"Defective SLC35C1 causes congenital disorder of glycosylation 2C (CDG2C)"
JAMg_model_19.1	3	KEGG: 00730+3.1.3.2;KEGG: 00740+3.1.3.2;MetaCyc: PWY-6348	"Thiamine metabolism";"Riboflavin metabolism";"Phosphate acquisition"
JAMg_model_5904.2	16	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012	"Peptide chain elongation";"Viral mRNA Translation";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_18046.1	5	Reactome: R-HSA-532668;Reactome: R-HSA-8957275;Reactome: R-HSA-381426;Reactome: R-HSA-901042;Reactome: R-HSA-879415	"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Post-translational protein phosphorylation";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Calnexin/calreticulin cycle";"Advanced glycosylation endproduct receptor signaling"
JAMg_model_3411.5	1	Reactome: R-HSA-977347	"Serine biosynthesis"
JAMg_model_16638.1	2	Reactome: R-HSA-6796648;Reactome: R-HSA-6783310	"TP53 Regulates Transcription of DNA Repair Genes";"Fanconi Anemia Pathway"
JAMg_model_5692.1	7	KEGG: 05163+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1	"Human cytomegalovirus infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway";"Thermogenesis";"Human papillomavirus infection"
JAMg_model_4970.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_13154.1	1	Reactome: R-HSA-912446	"Meiotic recombination"
JAMg_model_8153.8	3	KEGG: 00680+3.1.3.3;Reactome: R-HSA-977347;KEGG: 00260+3.1.3.3	"Methane metabolism";"Serine biosynthesis";"Glycine, serine and threonine metabolism"
JAMg_model_3009.1	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_3198.6	1	Reactome: R-HSA-1483191	"Synthesis of PC"
JAMg_model_3303.6	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_7597.2	8	Reactome: R-HSA-113507;Reactome: R-HSA-68867;Reactome: R-HSA-176187;Reactome: R-HSA-68689;Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-68616;Reactome: R-HSA-68827	"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress";"CDC6 association with the ORC:origin complex";"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Assembly of the ORC complex at the origin of replication";"CDT1 association with the CDC6:ORC:origin complex"
JAMg_model_7624.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_3755.1	2	Reactome: R-HSA-5601884;Reactome: R-HSA-1221632	"PIWI-interacting RNA (piRNA) biogenesis";"Meiotic synapsis"
JAMg_model_7975.1	6	Reactome: R-HSA-3299685;MetaCyc: PWY-6854;Reactome: R-HSA-9615017;Reactome: R-HSA-8950505;Reactome: R-HSA-2151201;Reactome: R-HSA-8862803	"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation";"Transcriptional activation of mitochondrial biogenesis";"Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models"
JAMg_model_20052.1	3	Reactome: R-HSA-196807;Reactome: R-HSA-74259;Reactome: R-HSA-73621	"Nicotinate metabolism";"Purine catabolism";"Pyrimidine catabolism"
JAMg_model_10979.1	5	Reactome: R-HSA-1655829;Reactome: R-HSA-2132295;Reactome: R-HSA-204005;Reactome: R-HSA-983170;Reactome: R-HSA-5694530	"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"MHC class II antigen presentation";"COPII-mediated vesicle transport";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"Cargo concentration in the ER"
JAMg_model_5977.1	3	Reactome: R-HSA-948021;Reactome: R-HSA-5694530;Reactome: R-HSA-204005	"Transport to the Golgi and subsequent modification";"Cargo concentration in the ER";"COPII-mediated vesicle transport"
JAMg_model_2272.1	3	Reactome: R-HSA-6807505;Reactome: R-HSA-76071;Reactome: R-HSA-749476	"RNA polymerase II transcribes snRNA genes";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_20243.1	5	Reactome: R-HSA-3656253;KEGG: 00534+2.4.1.224+2.4.1.225;Reactome: R-HSA-2022928;Reactome: R-HSA-3656237;MetaCyc: PWY-6558	"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"HS-GAG biosynthesis";"Defective EXT2 causes exostoses 2";"Heparan sulfate biosynthesis (late stages)"
JAMg_model_12391.4	7	MetaCyc: PWY-7625;MetaCyc: PWY-6351;KEGG: 04070+2.7.8.11;KEGG: 00562+2.7.8.11;MetaCyc: PWY-6352;Reactome: R-HSA-1483226;KEGG: 00564+2.7.8.11	"Phosphatidylinositol biosynthesis II (eukaryotes)";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"3-phosphoinositide biosynthesis";"Synthesis of PI";"Glycerophospholipid metabolism"
JAMg_model_9427.2	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_8435.4	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_21295.1	7	MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-7445	"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation"
JAMg_model_18090.5	3	Reactome: R-HSA-947581;KEGG: 00790+4.1.99.22;MetaCyc: PWY-6823	"Molybdenum cofactor biosynthesis";"Folate biosynthesis";"Molybdenum cofactor biosynthesis"
JAMg_model_12835.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_216.3	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_21137.1	1	Reactome: R-HSA-2564830	"Cytosolic iron-sulfur cluster assembly"
JAMg_model_7197.1	2	KEGG: 00240+3.6.1.23;KEGG: 00983+3.6.1.23	"Pyrimidine metabolism";"Drug metabolism - other enzymes"
JAMg_model_7587.2	2	Reactome: R-HSA-8951671;Reactome: R-HSA-2032785	"RUNX3 regulates YAP1-mediated transcription";"YAP1- and WWTR1 (TAZ)-stimulated gene expression"
JAMg_model_1675.2	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_8550.5	14	MetaCyc: PWY-8041;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036;KEGG: 00062+2.3.1.199;MetaCyc: PWY-5972;MetaCyc: PWY-7035;Reactome: R-HSA-75876;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7725;MetaCyc: PWY-5080	"Ultra-long-chain fatty acid biosynthesis";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Fatty acid elongation";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis I"
JAMg_model_19141.3	1	Reactome: R-HSA-6814848	"Glycerophospholipid catabolism"
JAMg_model_10279.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_3000.1	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_3217.3	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_17485.1	4	KEGG: 00730+2.7.4.3;MetaCyc: PWY-7219;Reactome: R-HSA-499943;KEGG: 00230+2.7.4.3	"Thiamine metabolism";"Adenosine ribonucleotides de novo biosynthesis";"Interconversion of nucleotide di- and triphosphates";"Purine metabolism"
JAMg_model_16083.2	3	MetaCyc: PWY-7799;Reactome: R-HSA-2514859;MetaCyc: PWY-7800	"Arg/N-end rule pathway (eukaryotic)";"Inactivation, recovery and regulation of the phototransduction cascade";"Ac/N-end rule pathway"
JAMg_model_20873.4	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_20729.1	1	KEGG: 00270+2.1.1.37	"Cysteine and methionine metabolism"
JAMg_model_14466.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_21122.1	1	Reactome: R-HSA-1445148	"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_10247.1	3	Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway"
JAMg_model_19289.1	5	Reactome: R-HSA-174490;Reactome: R-HSA-9610379;Reactome: R-HSA-162588;Reactome: R-HSA-917729;Reactome: R-HSA-9615710	"Membrane binding and targetting of GAG proteins";"HCMV Late Events";"Budding and maturation of HIV virion";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Late endosomal microautophagy"
JAMg_model_15870.4	8	KEGG: 00052+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1	"Galactose metabolism";"Fructose and mannose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Streptomycin biosynthesis";"Starch and sucrose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_2506.1	1	Reactome: R-HSA-913709	"O-linked glycosylation of mucins"
JAMg_model_10128.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_9627.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_16609.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_16624.3	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_16194.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_20782.2	57	Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-8854050;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481	"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints"
JAMg_model_2114.1	3	Reactome: R-HSA-5579007;Reactome: R-HSA-5423646;KEGG: 00220+3.5.1.14	"Defective ACY1 causes encephalopathy";"Aflatoxin activation and detoxification";"Arginine biosynthesis"
JAMg_model_9954.1	1	Reactome: R-HSA-1445148	"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_13437.1	57	Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-1236978;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-382556	"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cross-presentation of soluble exogenous antigens (endosomes)";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"ABC-family proteins mediated transport"
JAMg_model_11412.1	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_19561.1	3	MetaCyc: PWY-7831;Reactome: R-HSA-9033807;MetaCyc: PWY-7833	"ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide";"ABO blood group biosynthesis";"Biosynthesis of Lewis epitopes (H. pylori)"
JAMg_model_4220.2	2	Reactome: R-HSA-425366;Reactome: R-HSA-1483191	"Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC"
JAMg_model_12337.2	26	Reactome: R-HSA-210744;Reactome: R-HSA-933541;Reactome: R-HSA-201722;Reactome: R-HSA-1234158;Reactome: R-HSA-8941856;Reactome: R-HSA-3899300;Reactome: R-HSA-1912408;Reactome: R-HSA-400253;Reactome: R-HSA-8866907;Reactome: R-HSA-2894862;Reactome: R-HSA-9614657;Reactome: R-HSA-2644606;Reactome: R-HSA-3371568;Reactome: R-HSA-5617472;Reactome: R-HSA-918233;Reactome: R-HSA-9018519;Reactome: R-HSA-9617629;Reactome: R-HSA-381340;Reactome: R-HSA-3214847;Reactome: R-HSA-2122947;Reactome: R-HSA-1368082;Reactome: R-HSA-9013695;Reactome: R-HSA-9013508;Reactome: R-HSA-1989781;Reactome: R-HSA-5621575;Reactome: R-HSA-3134973	"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"TRAF6 mediated IRF7 activation";"Formation of the beta-catenin:TCF transactivating complex";"Regulation of gene expression by Hypoxia-inducible Factor";"RUNX3 regulates NOTCH signaling";"SUMOylation of transcription cofactors";"Pre-NOTCH Transcription and Translation";"Circadian Clock";"Activation of the TFAP2 (AP-2) family of transcription factors";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"FOXO-mediated transcription of cell death genes";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Attenuation phase";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"TRAF3-dependent IRF activation pathway";"Estrogen-dependent gene expression";"Regulation of FOXO transcriptional activity by acetylation";"Transcriptional regulation of white adipocyte differentiation";"HATs acetylate histones";"NOTCH1 Intracellular Domain Regulates Transcription";"RORA activates gene expression";"NOTCH4 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"PPARA activates gene expression";"CD209 (DC-SIGN) signaling";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production"
JAMg_model_14747.1	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_17687.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_7362.2	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_4272.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_10134.5	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_1501.1	2	Reactome: R-HSA-418890;Reactome: R-HSA-3295583	"Role of second messengers in netrin-1 signaling";"TRP channels"
JAMg_model_174.2	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_1151.9	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_1523.10	2	Reactome: R-HSA-8949613;Reactome: R-HSA-1268020	"Cristae formation";"Mitochondrial protein import"
JAMg_model_8875.4	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_2777.3	14	Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-426486;Reactome: R-HSA-8934593;Reactome: R-HSA-9029569;Reactome: R-HSA-5687128;Reactome: R-HSA-203927;Reactome: R-HSA-5628897;Reactome: R-HSA-8948700;Reactome: R-HSA-8986944;Reactome: R-HSA-9022692;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-426496	"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Small interfering RNA (siRNA) biogenesis";"Regulation of RUNX1 Expression and Activity";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"MAPK6/MAPK4 signaling";"MicroRNA (miRNA) biogenesis";"TP53 Regulates Metabolic Genes";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"Transcriptional Regulation by MECP2";"Regulation of MECP2 expression and activity";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Post-transcriptional silencing by small RNAs"
JAMg_model_17314.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_17195.2	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_17785.1	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_2567.1	1	Reactome: R-HSA-9609523	"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_14221.1	14	MetaCyc: PWY-7725;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-5080;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7035;MetaCyc: PWY-5972;Reactome: R-HSA-75876;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036	"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II"
JAMg_model_4149.1	6	KEGG: 00500+2.4.1.18;Reactome: R-HSA-3878781;MetaCyc: PWY-7900;MetaCyc: PWY-5067;MetaCyc: PWY-622;Reactome: R-HSA-3322077	"Starch and sucrose metabolism";"Glycogen storage disease type IV (GBE1)";"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)";"Glycogen biosynthesis II (from UDP-D-Glucose)";"Starch biosynthesis";"Glycogen synthesis"
JAMg_model_12444.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_14676.2	1	Reactome: R-HSA-112126	"ALKBH3 mediated reversal of alkylation damage"
JAMg_model_10404.1	13	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-193648;Reactome: R-HSA-416476;Reactome: R-HSA-5687128;KEGG: 05163+2.7.11.1;Reactome: R-HSA-416482;Reactome: R-HSA-3928662;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Thermogenesis";"Rho GTPase cycle";"Human papillomavirus infection";"Relaxin signaling pathway";"NRAGE signals death through JNK";"G alpha (q) signalling events";"MAPK6/MAPK4 signaling";"Human cytomegalovirus infection";"G alpha (12/13) signalling events";"EPHB-mediated forward signaling";"Human immunodeficiency virus 1 infection"
JAMg_model_423.1	1	Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_16046.1	6	Reactome: R-HSA-5358606;Reactome: R-HSA-5632968;Reactome: R-HSA-5632928;Reactome: R-HSA-6796648;Reactome: R-HSA-5632927;Reactome: R-HSA-5358565	"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Defective Mismatch Repair Associated With MSH6";"Defective Mismatch Repair Associated With MSH2";"TP53 Regulates Transcription of DNA Repair Genes";"Defective Mismatch Repair Associated With MSH3";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)"
JAMg_model_6793.1	6	Reactome: R-HSA-199220;Reactome: R-HSA-163765;Reactome: R-HSA-2426168;Reactome: R-HSA-75105;Reactome: R-HSA-9640463;Reactome: R-HSA-9029558	"Vitamin B5 (pantothenate) metabolism";"ChREBP activates metabolic gene expression";"Activation of gene expression by SREBF (SREBP)";"Fatty acyl-CoA biosynthesis";"Wax biosynthesis";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_6525.2	1	Reactome: R-HSA-435368	"Zinc efflux and compartmentalization by the SLC30 family"
JAMg_model_12414.1	1	Reactome: R-HSA-77289	"Mitochondrial Fatty Acid Beta-Oxidation"
JAMg_model_15766.2	17	Reactome: R-HSA-69166;Reactome: R-HSA-6782210;Reactome: R-HSA-174417;Reactome: R-HSA-5685942;Reactome: R-HSA-5656169;Reactome: R-HSA-5696397;Reactome: R-HSA-5358565;Reactome: R-HSA-5358606;Reactome: R-HSA-69183;Reactome: R-HSA-174437;Reactome: R-HSA-69091;Reactome: R-HSA-6782135;Reactome: R-HSA-5696400;Reactome: R-HSA-174411;Reactome: R-HSA-5651801;Reactome: R-HSA-174414;Reactome: R-HSA-110314	"Removal of the Flap Intermediate";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Telomere C-strand (Lagging Strand) Synthesis";"HDR through Homologous Recombination (HRR)";"Termination of translesion DNA synthesis";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)";"Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)";"Processive synthesis on the lagging strand";"Removal of the Flap Intermediate from the C-strand";"Polymerase switching";"Dual incision in TC-NER";"Dual Incision in GG-NER";"Polymerase switching on the C-strand of the telomere";"PCNA-Dependent Long Patch Base Excision Repair";"Processive synthesis on the C-strand of the telomere";"Recognition of DNA damage by PCNA-containing replication complex"
JAMg_model_14117.1	3	Reactome: R-HSA-74217;KEGG: 00230+3.5.4.6;MetaCyc: PWY-6596	"Purine salvage";"Purine metabolism";"Adenosine nucleotides degradation I"
JAMg_model_17401.1	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_12165.1	26	Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-983189;Reactome: R-HSA-389960;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-389977	"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Kinesins";"Formation of tubulin folding intermediates by CCT/TriC";"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Post-chaperonin tubulin folding pathway"
JAMg_model_10599.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_4219.1	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_14627.1	20	MetaCyc: PWY-7726;MetaCyc: PWY-7606;KEGG: 00640+1.3.3.6;MetaCyc: PWY-7007;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6;MetaCyc: PWY-7574;MetaCyc: PWY-7337;Reactome: R-HSA-9033241;MetaCyc: PWY-5136;MetaCyc: PWY-6920;MetaCyc: PWY-7340;MetaCyc: PWY-735;MetaCyc: PWY-7854;MetaCyc: PWY-7291;MetaCyc: PWY-7338;MetaCyc: PWY-7288;KEGG: 00071+1.3.3.6;MetaCyc: PWY-7858;KEGG: 00592+1.3.3.6	"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Propanoate metabolism";"Methyl ketone biosynthesis (engineered)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Peroxisomal protein import";"Fatty acid beta-oxidation II (plant peroxisome)";"6-gingerol analog biosynthesis (engineered)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"Jasmonic acid biosynthesis";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Oleate beta-oxidation (isomerase-dependent, yeast)";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Fatty acid degradation";"(5Z)-dodecenoate biosynthesis II";"alpha-Linolenic acid metabolism"
JAMg_model_18125.1	9	KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;MetaCyc: PWY-6902;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52;MetaCyc: PWY-7883;KEGG: 00513+3.2.1.52	"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation";"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Chitin degradation II (Vibrio)";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Anhydromuropeptides recycling II";"Various types of N-glycan biosynthesis"
JAMg_model_13226.3	3	KEGG: 00561+2.7.1.30;Reactome: R-HSA-75109;MetaCyc: PWY-4261	"Glycerolipid metabolism";"Triglyceride biosynthesis";"Glycerol degradation I"
JAMg_model_12460.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_19550.2	56	Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534	"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"ABC-family proteins mediated transport";"G2/M Checkpoints";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4"
JAMg_model_5287.4	1	Reactome: R-HSA-212436	"Generic Transcription Pathway"
JAMg_model_7510.3	3	KEGG: 00510+2.4.1.144;Reactome: R-HSA-975574;MetaCyc: PWY-7426	"N-Glycan biosynthesis";"Reactions specific to the hybrid N-glycan synthesis pathway";"Complex N-linked glycan biosynthesis (vertebrates)"
JAMg_model_9184.1	6	KEGG: 00561+2.7.1.107;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7039;MetaCyc: PWY-7817	"Glycerolipid metabolism";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Glycerophospholipid metabolism";"Phosphatidate metabolism, as a signaling molecule";"Type I lipoteichoic acid biosynthesis (S. aureus)"
JAMg_model_1294.1	56	Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-1236978;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-180534	"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4"
JAMg_model_18889.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_10622.1	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_17233.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_1563.1	1	Reactome: R-HSA-5624958	"ARL13B-mediated ciliary trafficking of INPP5E"
JAMg_model_18117.3	12	KEGG: 00450+4.4.1.13;MetaCyc: PWY-6309;KEGG: 00380+2.6.1.7;MetaCyc: PWY-601;MetaCyc: PWY-1187;MetaCyc: PWY-6936;KEGG: 00270+4.4.1.13;MetaCyc: PWY-6842;MetaCyc: PWY-801;MetaCyc: PWY-7901;Reactome: R-HSA-71240;MetaCyc: PWY-2821	"Selenocompound metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Tryptophan metabolism";"Glucosinolate biosynthesis from tryptophan";"Glucosinolate biosynthesis from homomethionine";"Seleno-amino acid biosynthesis (plants)";"Cysteine and methionine metabolism";"Glutathione-mediated detoxification II";"Homocysteine and cysteine interconversion";"Glucosinolate biosynthesis from tyrosine";"Tryptophan catabolism";"Glucosinolate biosynthesis from phenylalanine"
JAMg_model_17309.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_6316.1	3	Reactome: R-HSA-110314;Reactome: R-HSA-5689880;Reactome: R-HSA-6783310	"Recognition of DNA damage by PCNA-containing replication complex";"Ub-specific processing proteases";"Fanconi Anemia Pathway"
JAMg_model_9642.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_9241.2	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_18325.3	2	Reactome: R-HSA-445355;Reactome: R-HSA-390522	"Smooth Muscle Contraction";"Striated Muscle Contraction"
JAMg_model_13588.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_21184.2	1	Reactome: R-HSA-204626	"Hypusine synthesis from eIF5A-lysine"
JAMg_model_9797.2	14	Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-191273;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"Cholesterol biosynthesis";"Viral mRNA Translation";"Peptide chain elongation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_6758.1	7	Reactome: R-HSA-389661;KEGG: 00020+2.3.1.61;Reactome: R-HSA-71064;Reactome: R-HSA-71403;MetaCyc: PWY-5084;KEGG: 00380+2.3.1.61;KEGG: 00310+2.3.1.61	"Glyoxylate metabolism and glycine degradation";"Citrate cycle (TCA cycle)";"Lysine catabolism";"Citric acid cycle (TCA cycle)";"2-oxoglutarate decarboxylation to succinyl-CoA";"Tryptophan metabolism";"Lysine degradation"
JAMg_model_20443.1	5	Reactome: R-HSA-174403;KEGG: 00480+6.3.2.3;Reactome: R-HSA-5579006;KEGG: 00270+6.3.2.3;MetaCyc: PWY-8043	"Glutathione synthesis and recycling";"Glutathione metabolism";"Defective GSS causes Glutathione synthetase deficiency (GSS deficiency)";"Cysteine and methionine metabolism";"Ophthalmate biosynthesis"
JAMg_model_8476.1	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_15202.1	10	Reactome: R-HSA-8934903;Reactome: R-HSA-6814122;Reactome: R-HSA-6798695;Reactome: R-HSA-201688;Reactome: R-HSA-6804756;Reactome: R-HSA-2514853;Reactome: R-HSA-8948751;Reactome: R-HSA-8939243;Reactome: R-HSA-1483191;Reactome: R-HSA-445144	"Receptor Mediated Mitophagy";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Neutrophil degranulation";"WNT mediated activation of DVL";"Regulation of TP53 Activity through Phosphorylation";"Condensation of Prometaphase Chromosomes";"Regulation of PTEN stability and activity";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Synthesis of PC";"Signal transduction by L1"
JAMg_model_9576.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_860.3	2	Reactome: R-HSA-8856825;Reactome: R-HSA-8856828	"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis"
JAMg_model_6807.4	5	KEGG: 00630+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00720+4.2.1.3;KEGG: 00020+4.2.1.3;KEGG: 00290+4.2.1.33	"Glyoxylate and dicarboxylate metabolism";"Iron uptake and transport";"Carbon fixation pathways in prokaryotes";"Citrate cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis"
JAMg_model_7190.6	12	Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-194840;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1	"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection";"DCC mediated attractive signaling";"Human cytomegalovirus infection";"Human papillomavirus infection";"Rho GTPase cycle";"Thermogenesis";"Relaxin signaling pathway";"G alpha (q) signalling events";"NRAGE signals death through JNK";"mTOR signaling pathway";"PI3K-Akt signaling pathway"
JAMg_model_16383.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_496.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_1040.2	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_12948.1	1	Reactome: R-HSA-390522	"Striated Muscle Contraction"
JAMg_model_12688.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_20984.2	4	Reactome: R-HSA-112308;Reactome: R-HSA-5576892;Reactome: R-HSA-419037;Reactome: R-HSA-5576893	"Presynaptic depolarization and calcium channel opening";"Phase 0 - rapid depolarisation";"NCAM1 interactions";"Phase 2 - plateau phase"
JAMg_model_3822.1	4	Reactome: R-HSA-5693607;Reactome: R-HSA-111465;Reactome: R-HSA-5689880;Reactome: R-HSA-176187	"Processing of DNA double-strand break ends";"Apoptotic cleavage of cellular proteins";"Ub-specific processing proteases";"Activation of ATR in response to replication stress"
JAMg_model_4300.1	8	KEGG: 00270+1.1.1.27;KEGG: 00640+1.1.1.27;MetaCyc: PWY-6901;KEGG: 00010+1.1.1.27;Reactome: R-HSA-70268;MetaCyc: PWY-8086;KEGG: 00620+1.1.1.27;MetaCyc: PWY-5481	"Cysteine and methionine metabolism";"Propanoate metabolism";"Superpathway of glucose and xylose degradation";"Glycolysis / Gluconeogenesis";"Pyruvate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Pyruvate metabolism";"Pyruvate fermentation to (S)-lactate"
JAMg_model_19866.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_16062.1	2	Reactome: R-HSA-9033241;Reactome: R-HSA-8866654	"Peroxisomal protein import";"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_8213.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_13410.1	4	MetaCyc: PWY-8004;KEGG: 00030+1.1.1.49;KEGG: 00480+1.1.1.49;MetaCyc: PWY-7268	"Entner-Doudoroff pathway I";"Pentose phosphate pathway";"Glutathione metabolism";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)"
JAMg_model_10021.4	4	KEGG: 00562+1.13.99.1;MetaCyc: PWY-4841;KEGG: 00053+1.13.99.1;Reactome: R-HSA-1855183	"Inositol phosphate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Ascorbate and aldarate metabolism";"Synthesis of IP2, IP, and Ins in the cytosol"
JAMg_model_1102.2	2	KEGG: 00900+2.5.1.58;Reactome: R-HSA-2514859	"Terpenoid backbone biosynthesis";"Inactivation, recovery and regulation of the phototransduction cascade"
JAMg_model_20331.2	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_3303.2	1	Reactome: R-HSA-5693607	"Processing of DNA double-strand break ends"
JAMg_model_12391.1	7	KEGG: 00564+2.7.8.11;Reactome: R-HSA-1483226;MetaCyc: PWY-6352;KEGG: 04070+2.7.8.11;KEGG: 00562+2.7.8.11;MetaCyc: PWY-6351;MetaCyc: PWY-7625	"Glycerophospholipid metabolism";"Synthesis of PI";"3-phosphoinositide biosynthesis";"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Phosphatidylinositol biosynthesis II (eukaryotes)"
JAMg_model_1040.4	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_19428.1	2	Reactome: R-HSA-390471;Reactome: R-HSA-429958	"Association of TriC/CCT with target proteins during biosynthesis";"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_9246.1	2	Reactome: R-HSA-425397;Reactome: R-HSA-5619061	"Transport of vitamins, nucleosides, and related molecules";"Defective SLC33A1 causes spastic paraplegia 42 (SPG42)"
JAMg_model_16984.2	14	Reactome: R-HSA-5696397;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-6782210;Reactome: R-HSA-6782135;Reactome: R-HSA-69091;Reactome: R-HSA-5655862;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-110314;Reactome: R-HSA-174411;Reactome: R-HSA-5685942;Reactome: R-HSA-5651801;Reactome: R-HSA-5656121	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Dual incision in TC-NER";"Polymerase switching";"Translesion synthesis by POLK";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"Recognition of DNA damage by PCNA-containing replication complex";"Polymerase switching on the C-strand of the telomere";"HDR through Homologous Recombination (HRR)";"PCNA-Dependent Long Patch Base Excision Repair";"Translesion synthesis by POLI"
JAMg_model_14184.4	3	MetaCyc: PWY-6700;Reactome: R-HSA-6782315;MetaCyc: PWY-8106	"Queuosine biosynthesis I (de novo)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis III (queuosine salvage)"
JAMg_model_10992.4	2	Reactome: R-HSA-3299685;MetaCyc: PWY-6854	"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)"
JAMg_model_7037.3	1	Reactome: R-HSA-4419969	"Depolymerisation of the Nuclear Lamina"
JAMg_model_15100.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_3075.1	52	Reactome: R-HSA-76071;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-76066;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-73762;Reactome: R-HSA-73980;Reactome: R-HSA-73772;Reactome: R-HSA-73776;Reactome: R-HSA-6782135;Reactome: R-HSA-5250924;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-5601884;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-1834949;Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-76061;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-203927;Reactome: R-HSA-73780;Reactome: R-HSA-5578749;Reactome: R-HSA-72163;Reactome: R-HSA-749476;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-6781827;Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-6781823;Reactome: R-HSA-73863;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-5617472;Reactome: R-HSA-77075	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase I Transcription Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Promoter Escape";"Dual incision in TC-NER";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"PIWI-interacting RNA (piRNA) biogenesis";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Cytosolic sensors of pathogen-associated DNA";"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"MicroRNA (miRNA) biogenesis";"RNA Polymerase III Chain Elongation";"Transcriptional regulation by small RNAs";"mRNA Splicing - Major Pathway";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase I Transcription Termination";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"RNA Pol II CTD phosphorylation and interaction with CE"
JAMg_model_3937.1	24	Reactome: R-HSA-392517;Reactome: R-HSA-111931;Reactome: R-HSA-5687128;Reactome: R-HSA-163615;Reactome: R-HSA-180024;Reactome: R-HSA-4420097;Reactome: R-HSA-5610780;Reactome: R-HSA-983231;Reactome: R-HSA-5610783;Reactome: R-HSA-422356;KEGG: 04150+2.7.11.11;Reactome: R-HSA-5621575;Reactome: R-HSA-5610785;Reactome: R-HSA-163560;Reactome: R-HSA-8853659;Reactome: R-HSA-163358;Reactome: R-HSA-9634600;Reactome: R-HSA-5610787;Reactome: R-HSA-164378;Reactome: R-HSA-9010642;Reactome: R-HSA-442720;Reactome: R-HSA-381676;Reactome: R-HSA-8963896;Reactome: R-HSA-432040	"Rap1 signalling";"PKA-mediated phosphorylation of CREB";"MAPK6/MAPK4 signaling";"PKA activation";"DARPP-32 events";"VEGFA-VEGFR2 Pathway";"Degradation of GLI1 by the proteasome";"Factors involved in megakaryocyte development and platelet production";"Degradation of GLI2 by the proteasome";"Regulation of insulin secretion";"mTOR signaling pathway";"CD209 (DC-SIGN) signaling";"GLI3 is processed to GLI3R by the proteasome";"Triglyceride catabolism";"RET signaling";"PKA-mediated phosphorylation of key metabolic factors";"Regulation of glycolysis by fructose 2,6-bisphosphate metabolism";"Hedgehog 'off' state";"PKA activation in glucagon signalling";"ROBO receptors bind AKAP5";"CREB1 phosphorylation through the activation of Adenylate Cyclase";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"HDL assembly";"Vasopressin regulates renal water homeostasis via Aquaporins"
JAMg_model_9755.4	2	Reactome: R-HSA-425366;Reactome: R-HSA-1483191	"Transport of bile salts and organic acids, metal ions and amine compounds";"Synthesis of PC"
JAMg_model_10824.2	12	KEGG: 00230+2.7.1.25;KEGG: 00920+2.7.7.4;MetaCyc: PWY-5278;Reactome: R-HSA-174362;Reactome: R-HSA-2408550;KEGG: 00450+2.7.7.4;KEGG: 00261+2.7.7.4;MetaCyc: PWY-5340;MetaCyc: PWY-6683;KEGG: 00230+2.7.7.4;KEGG: 00920+2.7.1.25;MetaCyc: PWY-6932	"Purine metabolism";"Sulfur metabolism";"Sulfite oxidation III";"Transport and synthesis of PAPS";"Metabolism of ingested H2SeO4 and H2SeO3 into H2Se";"Selenocompound metabolism";"Monobactam biosynthesis";"Sulfate activation for sulfonation";"Assimilatory sulfate reduction III";"Purine metabolism";"Sulfur metabolism";"Selenate reduction"
JAMg_model_314.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_4975.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_7552.1	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_17534.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_7597.3	8	Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-68616;Reactome: R-HSA-68827;Reactome: R-HSA-113507;Reactome: R-HSA-68867;Reactome: R-HSA-176187;Reactome: R-HSA-68689	"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Assembly of the ORC complex at the origin of replication";"CDT1 association with the CDC6:ORC:origin complex";"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the pre-replicative complex";"Activation of ATR in response to replication stress";"CDC6 association with the ORC:origin complex"
JAMg_model_14736.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_18866.1	3	Reactome: R-HSA-5620912;Reactome: R-HSA-380270;Reactome: R-HSA-380320	"Anchoring of the basal body to the plasma membrane";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_359.2	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_12121.1	6	Reactome: R-HSA-1483166;KEGG: 00564+1.1.5.3;MetaCyc: PWY-6952;Reactome: R-HSA-163560;MetaCyc: PWY-4261;MetaCyc: PWY-6118	"Synthesis of PA";"Glycerophospholipid metabolism";"Glycerophosphodiester degradation";"Triglyceride catabolism";"Glycerol degradation I";"Glycerol-3-phosphate shuttle"
JAMg_model_13627.1	2	Reactome: R-HSA-1799339;Reactome: R-HSA-6798695	"SRP-dependent cotranslational protein targeting to membrane";"Neutrophil degranulation"
JAMg_model_13339.1	1	Reactome: R-HSA-388844	"Receptor-type tyrosine-protein phosphatases"
JAMg_model_10863.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_15154.1	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_19296.3	3	Reactome: R-HSA-191859;Reactome: R-HSA-6804760;Reactome: R-HSA-3214858	"snRNP Assembly";"Regulation of TP53 Activity through Methylation";"RMTs methylate histone arginines"
JAMg_model_3755.2	2	Reactome: R-HSA-5601884;Reactome: R-HSA-1221632	"PIWI-interacting RNA (piRNA) biogenesis";"Meiotic synapsis"
JAMg_model_12110.1	2	Reactome: R-HSA-380270;Reactome: R-HSA-380320	"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_2764.7	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_19931.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_4323.1	14	MetaCyc: PWY-7409;KEGG: 00564+3.1.1.4+3.1.1.5;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7416;MetaCyc: PWY-6803;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;KEGG: 00592+3.1.1.4;Reactome: R-HSA-975634;MetaCyc: PWY-8051;MetaCyc: PWY-7783;Reactome: R-HSA-1482788;MetaCyc: PWY-8053;KEGG: 00591+3.1.1.4	"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Glycerophospholipid metabolism";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Phosphatidylcholine acyl editing";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"alpha-Linolenic acid metabolism";"Retinoid metabolism and transport";"Anandamide biosynthesis I";"Plasmalogen degradation";"Acyl chain remodelling of PC";"Anandamide biosynthesis II";"Linoleic acid metabolism"
JAMg_model_12281.3	2	Reactome: R-HSA-983231;Reactome: R-HSA-5205685	"Factors involved in megakaryocyte development and platelet production";"Pink/Parkin Mediated Mitophagy"
JAMg_model_21356.2	9	Reactome: R-HSA-75953;Reactome: R-HSA-73779;Reactome: R-HSA-76042;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-6804756;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161	"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation"
JAMg_model_12337.6	26	Reactome: R-HSA-201722;Reactome: R-HSA-933541;Reactome: R-HSA-210744;Reactome: R-HSA-1912408;Reactome: R-HSA-3899300;Reactome: R-HSA-8941856;Reactome: R-HSA-1234158;Reactome: R-HSA-8866907;Reactome: R-HSA-2894862;Reactome: R-HSA-400253;Reactome: R-HSA-9018519;Reactome: R-HSA-918233;Reactome: R-HSA-3371568;Reactome: R-HSA-5617472;Reactome: R-HSA-2644606;Reactome: R-HSA-9614657;Reactome: R-HSA-9617629;Reactome: R-HSA-381340;Reactome: R-HSA-3214847;Reactome: R-HSA-9013508;Reactome: R-HSA-9013695;Reactome: R-HSA-1368082;Reactome: R-HSA-2122947;Reactome: R-HSA-5621575;Reactome: R-HSA-3134973;Reactome: R-HSA-1989781	"Formation of the beta-catenin:TCF transactivating complex";"TRAF6 mediated IRF7 activation";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"Pre-NOTCH Transcription and Translation";"SUMOylation of transcription cofactors";"RUNX3 regulates NOTCH signaling";"Regulation of gene expression by Hypoxia-inducible Factor";"Activation of the TFAP2 (AP-2) family of transcription factors";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Circadian Clock";"Estrogen-dependent gene expression";"TRAF3-dependent IRF activation pathway";"Attenuation phase";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"FOXO-mediated transcription of cell death genes";"Regulation of FOXO transcriptional activity by acetylation";"Transcriptional regulation of white adipocyte differentiation";"HATs acetylate histones";"NOTCH3 Intracellular Domain Regulates Transcription";"NOTCH4 Intracellular Domain Regulates Transcription";"RORA activates gene expression";"NOTCH1 Intracellular Domain Regulates Transcription";"CD209 (DC-SIGN) signaling";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production";"PPARA activates gene expression"
JAMg_model_16385.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_14542.1	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706	"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_19131.5	14	MetaCyc: PWY-8052;MetaCyc: PWY-6453;MetaCyc: PWY-8055;KEGG: 00564+3.1.3.4;Reactome: R-HSA-1483213;KEGG: 00561+3.1.3.4;MetaCyc: PWY-8051;KEGG: 00565+3.1.3.4;Reactome: R-HSA-75109;Reactome: R-HSA-4419969;KEGG: 00600+3.1.3.4;MetaCyc: PWY-7782;MetaCyc: PWY-8053;Reactome: R-HSA-1483191	"2-arachidonoylglycerol biosynthesis";"Stigma estolide biosynthesis";"Palmitoyl ethanolamide biosynthesis";"Glycerophospholipid metabolism";"Synthesis of PE";"Glycerolipid metabolism";"Anandamide biosynthesis I";"Ether lipid metabolism";"Triglyceride biosynthesis";"Depolymerisation of the Nuclear Lamina";"Sphingolipid metabolism";"Plasmalogen biosynthesis";"Anandamide biosynthesis II";"Synthesis of PC"
JAMg_model_8384.1	4	Reactome: R-HSA-2132295;Reactome: R-HSA-6811436;Reactome: R-HSA-3371497;Reactome: R-HSA-6807878	"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-mediated anterograde transport"
JAMg_model_7117.1	3	KEGG: 00230+4.6.1.2;Reactome: R-HSA-392154;Reactome: R-HSA-445355	"Purine metabolism";"Nitric oxide stimulates guanylate cyclase";"Smooth Muscle Contraction"
JAMg_model_980.1	1	Reactome: R-HSA-8856828	"Clathrin-mediated endocytosis"
JAMg_model_4814.2	13	Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764	"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination"
JAMg_model_4336.3	34	Reactome: R-HSA-1169408;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-168333;Reactome: R-HSA-2467813;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-4551638;Reactome: R-HSA-168276;Reactome: R-HSA-159227;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-68877;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-9639288;Reactome: R-HSA-170822;Reactome: R-HSA-6784531;Reactome: R-HSA-168271	"ISG15 antiviral mechanism";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"NEP/NS2 Interacts with the Cellular Export Machinery";"Separation of Sister Chromatids";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"SUMOylation of chromatin organization proteins";"NS1 Mediated Effects on Host Pathways";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Mitotic Prometaphase";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Amino acids regulate mTORC1";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus"
JAMg_model_10814.1	9	KEGG: 00720+6.4.1.1;Reactome: R-HSA-196780;Reactome: R-HSA-70263;KEGG: 00620+6.4.1.1;MetaCyc: PWY-6146;MetaCyc: PWY-8086;MetaCyc: PWY-6142;Reactome: R-HSA-3371599;KEGG: 00020+6.4.1.1	"Carbon fixation pathways in prokaryotes";"Biotin transport and metabolism";"Gluconeogenesis";"Pyruvate metabolism";"Methanobacterium thermoautotrophicum biosynthetic metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Defective HLCS causes multiple carboxylase deficiency";"Citrate cycle (TCA cycle)"
JAMg_model_7409.1	3	Reactome: R-HSA-77588;Reactome: R-HSA-111367;Reactome: R-HSA-73856	"SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs";"SLBP independent Processing of Histone Pre-mRNAs";"RNA Polymerase II Transcription Termination"
JAMg_model_7717.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_2956.1	3	Reactome: R-HSA-6782315;MetaCyc: PWY-6829;MetaCyc: PWY-7888	"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)";"Trna-uridine 2-thiolation (cytoplasmic)"
JAMg_model_13508.1	3	Reactome: R-HSA-2022854;Reactome: R-HSA-913709;Reactome: R-HSA-975577	"Keratan sulfate biosynthesis";"O-linked glycosylation of mucins";"N-Glycan antennae elongation"
JAMg_model_6941.3	1	Reactome: R-HSA-499943	"Interconversion of nucleotide di- and triphosphates"
JAMg_model_5587.1	2	Reactome: R-HSA-445095;Reactome: R-HSA-6807878	"Interaction between L1 and Ankyrins";"COPI-mediated anterograde transport"
JAMg_model_18194.2	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_561.3	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_12036.1	1	KEGG: 00970+6.1.1.19	"Aminoacyl-tRNA biosynthesis"
JAMg_model_21009.1	26	Reactome: R-HSA-8939256;Reactome: R-HSA-8939247;Reactome: R-HSA-8939236;Reactome: R-HSA-8939242;Reactome: R-HSA-8940973;Reactome: R-HSA-9018519;Reactome: R-HSA-8941284;Reactome: R-HSA-8931987;Reactome: R-HSA-8949275;Reactome: R-HSA-8939243;Reactome: R-HSA-8936459;Reactome: R-HSA-8878166;Reactome: R-HSA-8877330;Reactome: R-HSA-8939246;Reactome: R-HSA-8939245;Reactome: R-HSA-8934593;Reactome: R-HSA-8941332;Reactome: R-HSA-432047;Reactome: R-HSA-8951936;Reactome: R-HSA-8935964;Reactome: R-HSA-8951911;Reactome: R-HSA-8939902;Reactome: R-HSA-8941326;Reactome: R-HSA-9616222;Reactome: R-HSA-8941333;Reactome: R-HSA-8941858	"RUNX1 regulates transcription of genes involved in WNT signaling";"RUNX1 regulates transcription of genes involved in interleukin signaling";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"RUNX1 regulates transcription of genes involved in differentiation of keratinocytes";"RUNX2 regulates osteoblast differentiation";"Estrogen-dependent gene expression";"RUNX2 regulates chondrocyte maturation";"RUNX1 regulates estrogen receptor mediated transcription";"RUNX3 Regulates Immune Response and Cell Migration";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Transcriptional regulation by RUNX2";"RUNX1 and FOXP3 control the development of regulatory T lymphocytes (Tregs)";"RUNX1 regulates transcription of genes involved in differentiation of myeloid cells";"RUNX1 regulates transcription of genes involved in BCR signaling";"Regulation of RUNX1 Expression and Activity";"RUNX2 regulates genes involved in cell migration";"Passive transport by Aquaporins";"RUNX3 regulates p14-ARF";"RUNX1 regulates expression of components of tight junctions";"RUNX3 regulates RUNX1-mediated transcription";"Regulation of RUNX2 expression and activity";"RUNX2 regulates bone development";"Transcriptional regulation of granulopoiesis";"RUNX2 regulates genes involved in differentiation of myeloid cells";"Regulation of RUNX3 expression and activity"
JAMg_model_639.1	24	Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-983189	"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"Kinesins"
JAMg_model_13649.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_1477.1	3	Reactome: R-HSA-6807004;Reactome: R-HSA-6798695;Reactome: R-HSA-202427	"Negative regulation of MET activity";"Neutrophil degranulation";"Phosphorylation of CD3 and TCR zeta chains"
JAMg_model_12219.1	5	Reactome: R-HSA-69473;Reactome: R-HSA-5693607;Reactome: R-HSA-5693571;Reactome: R-HSA-5689901;Reactome: R-HSA-5693565	"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends";"Nonhomologous End-Joining (NHEJ)";"Metalloprotease DUBs";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_6550.2	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_20862.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_20230.2	1	KEGG: 00480+3.4.11.1	"Glutathione metabolism"
JAMg_model_1100.1	4	Reactome: R-HSA-446203;Reactome: R-HSA-1799339;Reactome: R-HSA-879415;Reactome: R-HSA-6798695	"Asparagine N-linked glycosylation";"SRP-dependent cotranslational protein targeting to membrane";"Advanced glycosylation endproduct receptor signaling";"Neutrophil degranulation"
JAMg_model_939.1	7	Reactome: R-HSA-76071;Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-73780;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-76066	"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_18983.1	6	Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-6791226;Reactome: R-HSA-450513;Reactome: R-HSA-380994;Reactome: R-HSA-450385	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Major pathway of rRNA processing in the nucleolus and cytosol";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA"
JAMg_model_308.1	2	Reactome: R-HSA-1660661;Reactome: R-HSA-6798695	"Sphingolipid de novo biosynthesis";"Neutrophil degranulation"
JAMg_model_2886.1	10	KEGG: 00562+2.7.1.153;KEGG: 04150+2.7.1.153;Reactome: R-HSA-9027276;KEGG: 04070+2.7.1.153;KEGG: 04151+2.7.1.153;Reactome: R-HSA-1660499;KEGG: 05170+2.7.1.153;MetaCyc: PWY-6352;KEGG: 05165+2.7.1.153;KEGG: 05163+2.7.1.153	"Inositol phosphate metabolism";"mTOR signaling pathway";"Erythropoietin activates Phosphoinositide-3-kinase (PI3K)";"Phosphatidylinositol signaling system";"PI3K-Akt signaling pathway";"Synthesis of PIPs at the plasma membrane";"Human immunodeficiency virus 1 infection";"3-phosphoinositide biosynthesis";"Human papillomavirus infection";"Human cytomegalovirus infection"
JAMg_model_14821.1	2	Reactome: R-HSA-429947;Reactome: R-HSA-6804115	"Deadenylation of mRNA";"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain"
JAMg_model_16579.6	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_15321.1	1	KEGG: 00240+3.1.3.89	"Pyrimidine metabolism"
JAMg_model_8046.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_2179.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_3523.2	1	MetaCyc: PWY-6308	"L-cysteine biosynthesis II (tRNA-dependent)"
JAMg_model_8852.1	1	Reactome: R-HSA-8849932	"Synaptic adhesion-like molecules"
JAMg_model_17937.2	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_17705.1	56	Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-1236978;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880	"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Cross-presentation of soluble exogenous antigens (endosomes)";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases"
JAMg_model_8784.2	3	Reactome: R-HSA-5693571;Reactome: R-HSA-3108214;Reactome: R-HSA-164843	"Nonhomologous End-Joining (NHEJ)";"SUMOylation of DNA damage response and repair proteins";"2-LTR circle formation"
JAMg_model_11741.4	24	Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-983189	"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Kinesins"
JAMg_model_20864.3	12	KEGG: 00680+6.2.1.1;KEGG: 00720+6.2.1.1;KEGG: 00620+6.2.1.1;MetaCyc: PWY-7118;MetaCyc: PWY-5108;KEGG: 00640+6.2.1.1;KEGG: 00630+6.2.1.1;KEGG: 00010+6.2.1.1;MetaCyc: PWY-5133;MetaCyc: PWY-7857;MetaCyc: PWY-5132;MetaCyc: PWY-6672	"Methane metabolism";"Carbon fixation pathways in prokaryotes";"Pyruvate metabolism";"Chitin degradation to ethanol";"L-isoleucine biosynthesis V";"Propanoate metabolism";"Glyoxylate and dicarboxylate metabolism";"Glycolysis / Gluconeogenesis";"Colupulone and cohumulone biosynthesis";"Adlupulone and adhumulone biosynthesis";"Lupulone and humulone biosynthesis";"Cis-genanyl-coa degradation"
JAMg_model_12302.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8913.1	56	Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5610785;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168	"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"GLI3 is processed to GLI3R by the proteasome";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_20280.2	2	Reactome: R-HSA-8854518;Reactome: R-HSA-6804756	"AURKA Activation by TPX2";"Regulation of TP53 Activity through Phosphorylation"
JAMg_model_16393.1	4	KEGG: 00640+4.1.1.9;Reactome: R-HSA-390247;Reactome: R-HSA-9033241;KEGG: 00410+4.1.1.9	"Propanoate metabolism";"Beta-oxidation of very long chain fatty acids";"Peroxisomal protein import";"beta-Alanine metabolism"
JAMg_model_19423.1	1	Reactome: R-HSA-163125	"Post-translational modification: synthesis of GPI-anchored proteins"
JAMg_model_1700.1	8	Reactome: R-HSA-68867;Reactome: R-HSA-113507;Reactome: R-HSA-68689;Reactome: R-HSA-176187;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68616;Reactome: R-HSA-68827	"Assembly of the pre-replicative complex";"E2F-enabled inhibition of pre-replication complex formation";"CDC6 association with the ORC:origin complex";"Activation of ATR in response to replication stress";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Assembly of the ORC complex at the origin of replication";"CDT1 association with the CDC6:ORC:origin complex"
JAMg_model_19148.1	5	Reactome: R-HSA-159231;Reactome: R-HSA-77595;Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-73856	"Transport of Mature mRNA Derived from an Intronless Transcript";"Processing of Intronless Pre-mRNAs";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination"
JAMg_model_4541.10	7	Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-8854518;Reactome: R-HSA-2565942	"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_21021.1	12	KEGG: 00500+2.7.7.9;KEGG: 00052+2.7.7.9;Reactome: R-HSA-173599;MetaCyc: PWY-6527;MetaCyc: PWY-3801;MetaCyc: PWY-7343;Reactome: R-HSA-3322077;KEGG: 00040+2.7.7.9;MetaCyc: PWY-7817;MetaCyc: PWY-7238;KEGG: 00561+2.7.7.9;KEGG: 00520+2.7.7.9	"Starch and sucrose metabolism";"Galactose metabolism";"Formation of the active cofactor, UDP-glucuronate";"Stachyose degradation";"Sucrose degradation II (sucrose synthase)";"UDP-alpha-D-glucose biosynthesis I";"Glycogen synthesis";"Pentose and glucuronate interconversions";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Sucrose biosynthesis II";"Glycerolipid metabolism";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_20275.2	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_10566.2	3	Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359	"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels"
JAMg_model_1511.1	2	Reactome: R-HSA-1483191;Reactome: R-HSA-425366	"Synthesis of PC";"Transport of bile salts and organic acids, metal ions and amine compounds"
JAMg_model_15875.6	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_6658.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_5776.9	3	Reactome: R-HSA-1614603;Reactome: R-HSA-2408508;Reactome: R-HSA-1614558	"Cysteine formation from homocysteine";"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Degradation of cysteine and homocysteine"
JAMg_model_2071.2	56	Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4641258;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176	"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Degradation of DVL";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha"
JAMg_model_2777.1	14	Reactome: R-HSA-8948700;Reactome: R-HSA-5628897;Reactome: R-HSA-5687128;Reactome: R-HSA-203927;Reactome: R-HSA-9022692;Reactome: R-HSA-8986944;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-426486;Reactome: R-HSA-1912408;Reactome: R-HSA-9029569;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-426496	"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"TP53 Regulates Metabolic Genes";"MAPK6/MAPK4 signaling";"MicroRNA (miRNA) biogenesis";"Regulation of MECP2 expression and activity";"Transcriptional Regulation by MECP2";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Small interfering RNA (siRNA) biogenesis";"Pre-NOTCH Transcription and Translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Post-transcriptional silencing by small RNAs"
JAMg_model_8428.1	10	KEGG: 00513+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-189085;KEGG: 00603+3.2.1.52;KEGG: 00604+3.2.1.52;KEGG: 00531+3.2.1.52;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00511+3.2.1.52;KEGG: 00520+3.2.1.52	"Various types of N-glycan biosynthesis";"Anhydromuropeptides recycling II";"Digestion of dietary carbohydrate";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Glycosphingolipid biosynthesis - ganglio series";"Glycosaminoglycan degradation";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Other glycan degradation";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_187.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_650.7	4	KEGG: 00480+2.5.1.16;KEGG: 00330+2.5.1.16;KEGG: 00270+2.5.1.16;Reactome: R-HSA-351202	"Glutathione metabolism";"Arginine and proline metabolism";"Cysteine and methionine metabolism";"Metabolism of polyamines"
JAMg_model_14184.1	3	MetaCyc: PWY-6700;Reactome: R-HSA-6782315;MetaCyc: PWY-8106	"Queuosine biosynthesis I (de novo)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis III (queuosine salvage)"
JAMg_model_18026.1	1	Reactome: R-HSA-6787450	"tRNA modification in the mitochondrion"
JAMg_model_2190.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_13435.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_12468.2	1	Reactome: R-HSA-8850843	"Phosphate bond hydrolysis by NTPDase proteins"
JAMg_model_8629.1	2	MetaCyc: PWY-6788;KEGG: 00500+3.2.1.4	"Cellulose degradation II (fungi)";"Starch and sucrose metabolism"
JAMg_model_8220.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10278.1	5	Reactome: R-HSA-376172;Reactome: R-HSA-4420097;KEGG: 04150+2.7.11.24;Reactome: R-HSA-171007;Reactome: R-HSA-168638	"DSCAM interactions";"VEGFA-VEGFR2 Pathway";"mTOR signaling pathway";"p38MAPK events";"NOD1/2 Signaling Pathway"
JAMg_model_3198.2	1	Reactome: R-HSA-1483191	"Synthesis of PC"
JAMg_model_8220.3	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_17344.1	4	Reactome: R-HSA-5685942;Reactome: R-HSA-5693579;Reactome: R-HSA-5693568;Reactome: R-HSA-5693554	"HDR through Homologous Recombination (HRR)";"Homologous DNA Pairing and Strand Exchange";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_6535.1	4	Reactome: R-HSA-112382;Reactome: R-HSA-75955;Reactome: R-HSA-8866654;Reactome: R-HSA-674695	"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Elongation";"E3 ubiquitin ligases ubiquitinate target proteins";"RNA Polymerase II Pre-transcription Events"
JAMg_model_2074.4	2	Reactome: R-HSA-8876198;Reactome: R-HSA-5357905	"RAB GEFs exchange GTP for GDP on RABs";"Regulation of TNFR1 signaling"
JAMg_model_19131.3	14	MetaCyc: PWY-8051;KEGG: 00565+3.1.3.4;Reactome: R-HSA-1483213;KEGG: 00561+3.1.3.4;KEGG: 00600+3.1.3.4;Reactome: R-HSA-1483191;MetaCyc: PWY-8053;MetaCyc: PWY-7782;Reactome: R-HSA-75109;Reactome: R-HSA-4419969;MetaCyc: PWY-8052;KEGG: 00564+3.1.3.4;MetaCyc: PWY-6453;MetaCyc: PWY-8055	"Anandamide biosynthesis I";"Ether lipid metabolism";"Synthesis of PE";"Glycerolipid metabolism";"Sphingolipid metabolism";"Synthesis of PC";"Anandamide biosynthesis II";"Plasmalogen biosynthesis";"Triglyceride biosynthesis";"Depolymerisation of the Nuclear Lamina";"2-arachidonoylglycerol biosynthesis";"Glycerophospholipid metabolism";"Stigma estolide biosynthesis";"Palmitoyl ethanolamide biosynthesis"
JAMg_model_10182.5	5	Reactome: R-HSA-2132295;Reactome: R-HSA-6811436;Reactome: R-HSA-983231;Reactome: R-HSA-3371497;Reactome: R-HSA-6807878	"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic";"Factors involved in megakaryocyte development and platelet production";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-mediated anterograde transport"
JAMg_model_456.1	5	Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288	"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1"
JAMg_model_12749.3	12	Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-2132295;Reactome: R-HSA-9648025;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813	"HCMV Early Events";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"MHC class II antigen presentation";"EML4 and NUDC in mitotic spindle formation";"COPI-mediated anterograde transport";"Separation of Sister Chromatids"
JAMg_model_13470.1	16	Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553	"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Peptide chain elongation";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs"
JAMg_model_20391.3	4	MetaCyc: PWY-7221;KEGG: 00230+6.3.5.2;Reactome: R-HSA-73817;KEGG: 00983+6.3.5.2	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"Drug metabolism - other enzymes"
JAMg_model_11061.2	1	Reactome: R-HSA-5693568	"Resolution of D-loop Structures through Holliday Junction Intermediates"
JAMg_model_10562.1	1	Reactome: R-HSA-5689880	"Ub-specific processing proteases"
JAMg_model_17269.5	3	MetaCyc: PWY-6700;Reactome: R-HSA-6782315;MetaCyc: PWY-8106	"Queuosine biosynthesis I (de novo)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis III (queuosine salvage)"
JAMg_model_17354.1	21	Reactome: R-HSA-202424;Reactome: R-HSA-9020702;Reactome: R-HSA-1810476;Reactome: R-HSA-933543;Reactome: R-HSA-1169091;Reactome: R-HSA-5357905;Reactome: R-HSA-168927;Reactome: R-HSA-1236974;Reactome: R-HSA-975144;Reactome: R-HSA-937041;Reactome: R-HSA-5603029;Reactome: R-HSA-5357956;Reactome: R-HSA-2871837;Reactome: R-HSA-933542;Reactome: R-HSA-937039;Reactome: R-HSA-5602636;Reactome: R-HSA-5684264;Reactome: R-HSA-445989;Reactome: R-HSA-5603027;Reactome: R-HSA-5607764;Reactome: R-HSA-168638	"Downstream TCR signaling";"Interleukin-1 signaling";"RIP-mediated NFkB activation via ZBP1";"NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10";"Activation of NF-kappaB in B cells";"Regulation of TNFR1 signaling";"TICAM1, RIP1-mediated IKK complex recruitment";"ER-Phagosome pathway";"IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation";"IKK complex recruitment mediated by RIP1";"IkBA variant leads to EDA-ID";"TNFR1-induced NFkappaB signaling pathway";"FCERI mediated NF-kB activation";"TRAF6 mediated NF-kB activation";"IRAK1 recruits IKK complex";"IKBKB deficiency causes SCID";"MAP3K8 (TPL2)-dependent MAPK1/3 activation";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"IKBKG deficiency causes anhidrotic ectodermal dysplasia with immunodeficiency (EDA-ID) (via TLR)";"CLEC7A (Dectin-1) signaling";"NOD1/2 Signaling Pathway"
JAMg_model_13133.1	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_2312.1	1	Reactome: R-HSA-111465	"Apoptotic cleavage of cellular proteins"
JAMg_model_15252.1	5	Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712	"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport"
JAMg_model_18865.2	6	Reactome: R-HSA-977347;KEGG: 00270+2.6.1.52;MetaCyc: PWY-8010;KEGG: 00260+2.6.1.52;KEGG: 00680+2.6.1.52;KEGG: 00750+2.6.1.52	"Serine biosynthesis";"Cysteine and methionine metabolism";"L-cysteine biosynthesis IX (Trichomonas vaginalis)";"Glycine, serine and threonine metabolism";"Methane metabolism";"Vitamin B6 metabolism"
JAMg_model_11797.1	16	Reactome: R-HSA-8936459;Reactome: R-HSA-9029569;Reactome: R-HSA-8934593;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-426496;Reactome: R-HSA-8943723;Reactome: R-HSA-9018519;Reactome: R-HSA-9022692;Reactome: R-HSA-2559580;Reactome: R-HSA-8986944;Reactome: R-HSA-8948700;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-2559585;Reactome: R-HSA-8853884	"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"Regulation of RUNX1 Expression and Activity";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Post-transcriptional silencing by small RNAs";"Regulation of PTEN mRNA translation";"Estrogen-dependent gene expression";"Regulation of MECP2 expression and activity";"Oxidative Stress Induced Senescence";"Transcriptional Regulation by MECP2";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX"
JAMg_model_8433.1	1	Reactome: R-HSA-2514859	"Inactivation, recovery and regulation of the phototransduction cascade"
JAMg_model_519.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_15905.1	3	Reactome: R-HSA-5632968;Reactome: R-HSA-5632928;Reactome: R-HSA-5358565	"Defective Mismatch Repair Associated With MSH6";"Defective Mismatch Repair Associated With MSH2";"Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)"
JAMg_model_16117.1	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_20768.1	3	Reactome: R-HSA-196807;Reactome: R-HSA-73621;Reactome: R-HSA-74259	"Nicotinate metabolism";"Pyrimidine catabolism";"Purine catabolism"
JAMg_model_9236.2	1	Reactome: R-HSA-352230	"Amino acid transport across the plasma membrane"
JAMg_model_19376.1	5	Reactome: R-HSA-212300;KEGG: 00270+2.1.1.37;Reactome: R-HSA-4655427;Reactome: R-HSA-427413;Reactome: R-HSA-5334118	"PRC2 methylates histones and DNA";"Cysteine and methionine metabolism";"SUMOylation of DNA methylation proteins";"NoRC negatively regulates rRNA expression";"DNA methylation"
JAMg_model_7169.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_11141.1	2	KEGG: 00970+6.1.1.9;Reactome: R-HSA-189085	"Aminoacyl-tRNA biosynthesis";"Digestion of dietary carbohydrate"
JAMg_model_14065.2	2	Reactome: R-HSA-5620924;Reactome: R-HSA-5610787	"Intraflagellar transport";"Hedgehog 'off' state"
JAMg_model_9719.1	2	KEGG: 00230+4.6.1.1;Reactome: R-HSA-196819	"Purine metabolism";"Vitamin B1 (thiamin) metabolism"
JAMg_model_8875.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_10992.7	2	Reactome: R-HSA-3299685;MetaCyc: PWY-6854	"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)"
JAMg_model_16422.3	6	KEGG: 04070+2.7.11.13;Reactome: R-HSA-418597;Reactome: R-HSA-416993;Reactome: R-HSA-76005;Reactome: R-HSA-114516;Reactome: R-HSA-5099900	"Phosphatidylinositol signaling system";"G alpha (z) signalling events";"Trafficking of GluR2-containing AMPA receptors";"Response to elevated platelet cytosolic Ca2+";"Disinhibition of SNARE formation";"WNT5A-dependent internalization of FZD4"
JAMg_model_8752.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_10328.5	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_15974.3	10	MetaCyc: PWY-7003;KEGG: 00710+2.7.2.3;Reactome: R-HSA-70171;Reactome: R-HSA-70263;MetaCyc: PWY-8004;MetaCyc: PWY-6886;KEGG: 00010+2.7.2.3;MetaCyc: PWY-6901;MetaCyc: PWY-5484;MetaCyc: PWY-1042	"Glycerol degradation to butanol";"Carbon fixation in photosynthetic organisms";"Glycolysis";"Gluconeogenesis";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)"
JAMg_model_8408.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_12123.1	3	Reactome: R-HSA-1236974;Reactome: R-HSA-9609523;Reactome: R-HSA-1799339	"ER-Phagosome pathway";"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_17309.2	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_12979.3	18	MetaCyc: PWY-7221;MetaCyc: PWY-7187;MetaCyc: PWY-6545;Reactome: R-HSA-499943;MetaCyc: PWY-7205;MetaCyc: PWY-7222;MetaCyc: PWY-7224;MetaCyc: PWY-7176;MetaCyc: PWY-7227;MetaCyc: PWY-7220;MetaCyc: PWY-7198;MetaCyc: PWY-7210;KEGG: 00240+2.7.4.6;MetaCyc: PWY-7184;MetaCyc: PWY-7197;KEGG: 00983+2.7.4.6;MetaCyc: PWY-7226;KEGG: 00230+2.7.4.6	"Guanosine ribonucleotides de novo biosynthesis";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"CMP phosphorylation";"Guanosine deoxyribonucleotides de novo biosynthesis II";"Purine deoxyribonucleosides salvage";"UTP and CTP de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Pyrimidine deoxyribonucleotide phosphorylation";"Drug metabolism - other enzymes";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism"
JAMg_model_13508.3	3	Reactome: R-HSA-913709;Reactome: R-HSA-2022854;Reactome: R-HSA-975577	"O-linked glycosylation of mucins";"Keratan sulfate biosynthesis";"N-Glycan antennae elongation"
JAMg_model_19892.1	10	Reactome: R-HSA-6798695;KEGG: 00052+3.2.1.23;KEGG: 00511+3.2.1.23;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00531+3.2.1.23;Reactome: R-HSA-2160916;MetaCyc: PWY-6807;Reactome: R-HSA-2024096;Reactome: R-HSA-2206292	"Neutrophil degranulation";"Galactose metabolism";"Other glycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Glycosaminoglycan degradation";"Hyaluronan uptake and degradation";"Xyloglucan degradation II (exoglucanase)";"HS-GAG degradation";"MPS VII - Sly syndrome"
JAMg_model_15020.2	2	Reactome: R-HSA-5663220;Reactome: R-HSA-376176	"RHO GTPases Activate Formins";"Signaling by ROBO receptors"
JAMg_model_15039.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-5628897	"Respiratory electron transport";"TP53 Regulates Metabolic Genes"
JAMg_model_16243.2	1	Reactome: R-HSA-1483148	"Synthesis of PG"
JAMg_model_11988.1	2	Reactome: R-HSA-171319;Reactome: R-HSA-6790901	"Telomere Extension By Telomerase";"rRNA modification in the nucleus and cytosol"
JAMg_model_9776.1	5	Reactome: R-HSA-427413;Reactome: R-HSA-5250924;Reactome: R-HSA-73863;Reactome: R-HSA-73762;Reactome: R-HSA-73772	"NoRC negatively regulates rRNA expression";"B-WICH complex positively regulates rRNA expression";"RNA Polymerase I Transcription Termination";"RNA Polymerase I Transcription Initiation";"RNA Polymerase I Promoter Escape"
JAMg_model_16138.1	20	KEGG: 00640+1.3.3.6;MetaCyc: PWY-7606;MetaCyc: PWY-7726;MetaCyc: PWY-7007;MetaCyc: PWY-5136;Reactome: R-HSA-9033241;MetaCyc: PWY-7340;MetaCyc: PWY-6920;MetaCyc: PWY-6837;KEGG: 00410+1.3.3.6;MetaCyc: PWY-7574;MetaCyc: PWY-7337;MetaCyc: PWY-7858;KEGG: 00071+1.3.3.6;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7338;MetaCyc: PWY-7288;MetaCyc: PWY-735;MetaCyc: PWY-7854;MetaCyc: PWY-7291	"Propanoate metabolism";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Methyl ketone biosynthesis (engineered)";"Fatty acid beta-oxidation II (plant peroxisome)";"Peroxisomal protein import";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"6-gingerol analog biosynthesis (engineered)";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"beta-Alanine metabolism";"Propanoyl-coa degradation II";"10-cis-heptadecenoyl-CoA degradation (yeast)";"(5Z)-dodecenoate biosynthesis II";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"Jasmonic acid biosynthesis";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Oleate beta-oxidation (isomerase-dependent, yeast)"
JAMg_model_4165.2	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_8721.2	3	Reactome: R-HSA-2024096;KEGG: 00531+3.2.1.50;Reactome: R-HSA-2206282	"HS-GAG degradation";"Glycosaminoglycan degradation";"MPS IIIB - Sanfilippo syndrome B"
JAMg_model_2691.1	7	MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7445;MetaCyc: PWY-7214	"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis";"Phenylpropanoid biosynthesis";"Betanidin degradation";"Luteolin triglucuronide degradation";"Baicalein degradation (hydrogen peroxide detoxification)"
JAMg_model_1149.1	4	MetaCyc: PWY-5084;KEGG: 00380+1.2.4.2;KEGG: 00020+1.2.4.2;KEGG: 00310+1.2.4.2	"2-oxoglutarate decarboxylation to succinyl-CoA";"Tryptophan metabolism";"Citrate cycle (TCA cycle)";"Lysine degradation"
JAMg_model_10021.2	4	Reactome: R-HSA-1855183;KEGG: 00053+1.13.99.1;MetaCyc: PWY-4841;KEGG: 00562+1.13.99.1	"Synthesis of IP2, IP, and Ins in the cytosol";"Ascorbate and aldarate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)";"Inositol phosphate metabolism"
JAMg_model_5994.1	2	Reactome: R-HSA-5357905;Reactome: R-HSA-5357956	"Regulation of TNFR1 signaling";"TNFR1-induced NFkappaB signaling pathway"
JAMg_model_1387.1	7	Reactome: R-HSA-380972;Reactome: R-HSA-5674400;Reactome: R-HSA-8854214;Reactome: R-HSA-198323;Reactome: R-HSA-1632852;Reactome: R-HSA-5628897;Reactome: R-HSA-165181	"Energy dependent regulation of mTOR by LKB1-AMPK";"Constitutive Signaling by AKT1 E17K in Cancer";"TBC/RABGAPs";"AKT phosphorylates targets in the cytosol";"Macroautophagy";"TP53 Regulates Metabolic Genes";"Inhibition of TSC complex formation by PKB"
JAMg_model_990.1	14	KEGG: 00260+2.1.2.1;MetaCyc: PWY-1622;MetaCyc: PWY-2201;MetaCyc: PWY-5497;KEGG: 00670+2.1.2.1;MetaCyc: PWY-3661-1;MetaCyc: PWY-181;MetaCyc: PWY-3661;MetaCyc: PWY-2161;Reactome: R-HSA-196757;KEGG: 00680+2.1.2.1;KEGG: 00630+2.1.2.1;MetaCyc: PWY-3841;KEGG: 00460+2.1.2.1	"Glycine, serine and threonine metabolism";"Formaldehyde assimilation I (serine pathway)";"Folate transformations I";"Purine nucleobases degradation II (anaerobic)";"One carbon pool by folate";"Glycine betaine degradation II (mammalian)";"Photorespiration ";"Glycine betaine degradation I";"Folate polyglutamylation";"Metabolism of folate and pterines";"Methane metabolism";"Glyoxylate and dicarboxylate metabolism";"Folate transformations II (plants)";"Cyanoamino acid metabolism"
JAMg_model_4834.3	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_17532.1	2	Reactome: R-HSA-6807878;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_11090.1	4	Reactome: R-HSA-8874211;Reactome: R-HSA-8963889;Reactome: R-HSA-1655829;Reactome: R-HSA-381033	"CREB3 factors activate genes";"Assembly of active LPL and LIPC lipase complexes";"Regulation of cholesterol biosynthesis by SREBP (SREBF)";"ATF6 (ATF6-alpha) activates chaperones"
JAMg_model_19550.3	56	Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785	"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome"
JAMg_model_4160.2	4	Reactome: R-HSA-5696394;Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-8856825	"DNA Damage Recognition in GG-NER";"Formation of TC-NER Pre-Incision Complex";"Neddylation";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_7052.5	1	Reactome: R-HSA-196108	"Pregnenolone biosynthesis"
JAMg_model_14230.1	2	Reactome: R-HSA-9610379;Reactome: R-HSA-917729	"HCMV Late Events";"Endosomal Sorting Complex Required For Transport (ESCRT)"
JAMg_model_1898.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_13953.1	13	Reactome: R-HSA-416482;Reactome: R-HSA-4420097;Reactome: R-HSA-416572;Reactome: R-HSA-5627117;Reactome: R-HSA-3928662;KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-3928663;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1	"G alpha (12/13) signalling events";"VEGFA-VEGFR2 Pathway";"Sema4D induced cell migration and growth-cone collapse";"RHO GTPases Activate ROCKs";"EPHB-mediated forward signaling";"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"EPHA-mediated growth cone collapse";"PI3K-Akt signaling pathway";"mTOR signaling pathway"
JAMg_model_13966.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_14172.1	1	Reactome: R-HSA-606279	"Deposition of new CENPA-containing nucleosomes at the centromere"
JAMg_model_20279.2	4	MetaCyc: PWY-5028;KEGG: 00340+3.5.2.7;Reactome: R-HSA-70921;MetaCyc: PWY-5030	"L-histidine degradation II";"Histidine metabolism";"Histidine catabolism";"L-histidine degradation III"
JAMg_model_20404.2	10	MetaCyc: PWY-5484;KEGG: 00710+5.3.1.1;KEGG: 00562+5.3.1.1;MetaCyc: PWY-1042;KEGG: 00010+5.3.1.1;Reactome: R-HSA-70263;MetaCyc: PWY-7003;Reactome: R-HSA-70171;MetaCyc: PWY-6142;KEGG: 00051+5.3.1.1	"Glycolysis II (from fructose 6-phosphate)";"Carbon fixation in photosynthetic organisms";"Inositol phosphate metabolism";"Glycolysis IV (plant cytosol)";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Glycerol degradation to butanol";"Glycolysis";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Fructose and mannose metabolism"
JAMg_model_2132.3	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_19162.1	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_16170.1	1	Reactome: R-HSA-6811436	"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_4961.5	5	Reactome: R-HSA-8875360;Reactome: R-HSA-6807004;Reactome: R-HSA-8856828;Reactome: R-HSA-8856825;Reactome: R-HSA-182971	"InlB-mediated entry of Listeria monocytogenes into host cell";"Negative regulation of MET activity";"Clathrin-mediated endocytosis";"Cargo recognition for clathrin-mediated endocytosis";"EGFR downregulation"
JAMg_model_20362.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_19431.2	13	Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957	"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_6502.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_10609.2	5	MetaCyc: PWY-8013;KEGG: 00250+2.6.1.16;MetaCyc: PWY-6749;Reactome: R-HSA-446210;KEGG: 00520+2.6.1.16	"UDP-N-acetyl-D-galactosamine biosynthesis III";"Alanine, aspartate and glutamate metabolism";"CMP-legionaminate biosynthesis I";"Synthesis of UDP-N-acetyl-glucosamine";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_11756.2	2	Reactome: R-HSA-390918;Reactome: R-HSA-9033241	"Peroxisomal lipid metabolism";"Peroxisomal protein import"
JAMg_model_20389.2	1	Reactome: R-HSA-1660499	"Synthesis of PIPs at the plasma membrane"
JAMg_model_1310.2	1	KEGG: 00970+6.1.1.3	"Aminoacyl-tRNA biosynthesis"
JAMg_model_5074.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_14553.1	8	Reactome: R-HSA-69183;Reactome: R-HSA-113501;Reactome: R-HSA-68962;Reactome: R-HSA-174411;Reactome: R-HSA-174430;Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-68952	"Processive synthesis on the lagging strand";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Activation of the pre-replicative complex";"Polymerase switching on the C-strand of the telomere";"Telomere C-strand synthesis initiation";"Removal of the Flap Intermediate";"Polymerase switching";"DNA replication initiation"
JAMg_model_8452.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_6807.9	5	KEGG: 00720+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00630+4.2.1.3;KEGG: 00290+4.2.1.33;KEGG: 00020+4.2.1.3	"Carbon fixation pathways in prokaryotes";"Iron uptake and transport";"Glyoxylate and dicarboxylate metabolism";"Valine, leucine and isoleucine biosynthesis";"Citrate cycle (TCA cycle)"
JAMg_model_3525.2	5	Reactome: R-HSA-901042;Reactome: R-HSA-879415;Reactome: R-HSA-532668;Reactome: R-HSA-381426;Reactome: R-HSA-8957275	"Calnexin/calreticulin cycle";"Advanced glycosylation endproduct receptor signaling";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation"
JAMg_model_15505.1	2	Reactome: R-HSA-4086398;Reactome: R-HSA-418457	"Ca2+ pathway";"cGMP effects"
JAMg_model_6855.1	69	Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-4641257;MetaCyc: PWY-3841;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;KEGG: 00720+6.3.4.3;Reactome: R-HSA-5678895;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;MetaCyc: PWY-1722;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-69481;KEGG: 00720+1.5.1.5+3.5.4.9;MetaCyc: PWY-6613;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;KEGG: 00670+1.5.1.5+3.5.4.9;Reactome: R-HSA-5676590;MetaCyc: PWY-2201;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;MetaCyc: PWY-2161;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;MetaCyc: PWY-7909;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5689603;Reactome: R-HSA-1234176;MetaCyc: PWY-5497;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-196757;MetaCyc: PWY-5030;Reactome: R-HSA-195253;Reactome: R-HSA-187577;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-68949;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;KEGG: 00670+6.3.4.3;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425	"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"Degradation of AXIN";"Folate transformations II (plants)";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Carbon fixation pathways in prokaryotes";"Defective CFTR causes cystic fibrosis";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"Formate assimilation into 5,10-methylenetetrahydrofolate";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"G2/M Checkpoints";"Carbon fixation pathways in prokaryotes";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"One carbon pool by folate";"NIK-->noncanonical NF-kB signaling";"Folate transformations I";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Folate polyglutamylation";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Formaldehyde oxidation VII (THF pathway)";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"UCH proteinases";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Purine nucleobases degradation II (anaerobic)";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Metabolism of folate and pterines";"L-histidine degradation III";"Degradation of beta-catenin by the destruction complex";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Orc1 removal from chromatin";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"One carbon pool by folate";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1"
JAMg_model_19608.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_19812.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_15729.2	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_3020.1	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_20249.3	2	Reactome: R-HSA-72702;Reactome: R-HSA-72706	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit"
JAMg_model_9837.3	8	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-9633012;KEGG: 04714+2.7.11.1;KEGG: 04926+2.7.11.1	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human papillomavirus infection";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Thermogenesis";"Relaxin signaling pathway"
JAMg_model_8826.2	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_1523.2	2	Reactome: R-HSA-8949613;Reactome: R-HSA-1268020	"Cristae formation";"Mitochondrial protein import"
JAMg_model_11342.2	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_19655.2	3	KEGG: 00860+2.5.1.141;MetaCyc: PWY-7856;Reactome: R-HSA-189451	"Porphyrin and chlorophyll metabolism";"Heme a biosynthesis";"Heme biosynthesis"
JAMg_model_10844.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_10392.1	1	Reactome: R-HSA-1362409	"Mitochondrial iron-sulfur cluster biogenesis"
JAMg_model_13782.1	4	Reactome: R-HSA-8856825;Reactome: R-HSA-6781823;Reactome: R-HSA-8951664;Reactome: R-HSA-5696394	"Cargo recognition for clathrin-mediated endocytosis";"Formation of TC-NER Pre-Incision Complex";"Neddylation";"DNA Damage Recognition in GG-NER"
JAMg_model_17072.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_696.1	5	Reactome: R-HSA-450321;Reactome: R-HSA-2871796;KEGG: 04150+2.7.11.24;Reactome: R-HSA-2559580;Reactome: R-HSA-450341	"JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1";"FCERI mediated MAPK activation";"mTOR signaling pathway";"Oxidative Stress Induced Senescence";"Activation of the AP-1 family of transcription factors"
JAMg_model_11883.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-6807505	"Protein ubiquitination";"RNA polymerase II transcribes snRNA genes"
JAMg_model_14961.4	4	Reactome: R-HSA-389661;KEGG: 00785+2.8.1.8;MetaCyc: PWY-7382;MetaCyc: PWY-6987	"Glyoxylate metabolism and glycine degradation";"Lipoic acid metabolism";"Lipoate biosynthesis and incorporation IV (yeast)";"Lipoate biosynthesis and incorporation III (Bacillus)"
JAMg_model_13258.2	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_21355.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_3132.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_4336.2	34	Reactome: R-HSA-3232142;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-4570464;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-68877;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-170822;Reactome: R-HSA-159236;Reactome: R-HSA-9639288;Reactome: R-HSA-5663220;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-159227;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-168276;Reactome: R-HSA-4551638	"SUMOylation of ubiquitinylation proteins";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"SUMOylation of RNA binding proteins";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Mitotic Prometaphase";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Amino acids regulate mTORC1";"RHO GTPases Activate Formins";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"NS1 Mediated Effects on Host Pathways";"SUMOylation of chromatin organization proteins"
JAMg_model_4775.1	2	KEGG: 00760+2.7.1.173+2.7.1.22;MetaCyc: PWY-5381	"Nicotinate and nicotinamide metabolism";"Pyridine nucleotide cycling (plants)"
JAMg_model_8806.1	7	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-1834949;Reactome: R-HSA-73780;Reactome: R-HSA-73980;Reactome: R-HSA-749476;Reactome: R-HSA-76071	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 3 Promoter"
JAMg_model_13502.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_8653.1	3	Reactome: R-HSA-727802;Reactome: R-HSA-5619078;Reactome: R-HSA-6787639	"Transport of nucleotide sugars";"Defective SLC35C1 causes congenital disorder of glycosylation 2C (CDG2C)";"GDP-fucose biosynthesis"
JAMg_model_20334.9	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_8505.1	7	Reactome: R-HSA-76066;Reactome: R-HSA-76061;Reactome: R-HSA-73780;Reactome: R-HSA-1834949;Reactome: R-HSA-73980;Reactome: R-HSA-749476;Reactome: R-HSA-76071	"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Chain Elongation";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 3 Promoter"
JAMg_model_8153.9	3	Reactome: R-HSA-977347;KEGG: 00680+3.1.3.3;KEGG: 00260+3.1.3.3	"Serine biosynthesis";"Methane metabolism";"Glycine, serine and threonine metabolism"
JAMg_model_3810.2	3	Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-6811438	"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic"
JAMg_model_957.6	4	Reactome: R-HSA-6811434;Reactome: R-HSA-5625970;Reactome: R-HSA-2132295;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate KTN1";"MHC class II antigen presentation";"Kinesins"
JAMg_model_21315.2	15	MetaCyc: PWY-5723;MetaCyc: PWY-2221;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-7218;KEGG: 00010+2.7.1.40;MetaCyc: PWY-6901;MetaCyc: PWY-5484;MetaCyc: PWY-1042;MetaCyc: PWY-7383;KEGG: 00230+2.7.1.40;MetaCyc: PWY-6142;KEGG: 00620+2.7.1.40;MetaCyc: PWY-7003;Reactome: R-HSA-70171	"Rubisco shunt";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis IV (plant cytosol)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Purine metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Pyruvate metabolism";"Glycerol degradation to butanol";"Glycolysis"
JAMg_model_19272.7	2	Reactome: R-HSA-70921;KEGG: 00340+2.1.1.22	"Histidine catabolism";"Histidine metabolism"
JAMg_model_2197.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_18324.3	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_6691.3	6	MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733	"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis"
JAMg_model_639.3	24	Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-983189;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690	"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Kinesins";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events"
JAMg_model_17325.1	2	Reactome: R-HSA-72165;Reactome: R-HSA-72163	"mRNA Splicing - Minor Pathway";"mRNA Splicing - Major Pathway"
JAMg_model_7894.1	2	Reactome: R-HSA-5689603;Reactome: R-HSA-2173788	"UCH proteinases";"Downregulation of TGF-beta receptor signaling"
JAMg_model_21053.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-936837	"Neutrophil degranulation";"Ion transport by P-type ATPases"
JAMg_model_7496.4	4	Reactome: R-HSA-982772;Reactome: R-HSA-1170546;Reactome: R-HSA-983231;Reactome: R-HSA-2586552	"Growth hormone receptor signaling";"Prolactin receptor signaling";"Factors involved in megakaryocyte development and platelet production";"Signaling by Leptin"
JAMg_model_8721.1	3	Reactome: R-HSA-2206282;Reactome: R-HSA-2024096;KEGG: 00531+3.2.1.50	"MPS IIIB - Sanfilippo syndrome B";"HS-GAG degradation";"Glycosaminoglycan degradation"
JAMg_model_17695.2	7	Reactome: R-HSA-445095;Reactome: R-HSA-6798695;Reactome: R-HSA-373753;Reactome: R-HSA-264870;Reactome: R-HSA-375165;Reactome: R-HSA-6807878;Reactome: R-HSA-5673001	"Interaction between L1 and Ankyrins";"Neutrophil degranulation";"Nephrin family interactions";"Caspase-mediated cleavage of cytoskeletal proteins";"NCAM signaling for neurite out-growth";"COPI-mediated anterograde transport";"RAF/MAP kinase cascade"
JAMg_model_11119.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_20673.1	1	Reactome: R-HSA-2028269	"Signaling by Hippo"
JAMg_model_19116.3	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_16510.1	3	Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_14158.2	10	KEGG: 00230+3.5.2.17;MetaCyc: PWY-5691;Reactome: R-HSA-975634;MetaCyc: PWY-7394;Reactome: R-HSA-977225;Reactome: R-HSA-3000171;Reactome: R-HSA-6798695;Reactome: R-HSA-2453902;MetaCyc: PWY-7849;Reactome: R-HSA-2453864	"Purine metabolism";"Urate conversion to allantoin I";"Retinoid metabolism and transport";"Urate conversion to allantoin II";"Amyloid fiber formation";"Non-integrin membrane-ECM interactions";"Neutrophil degranulation";"The canonical retinoid cycle in rods (twilight vision)";"Urate conversion to allantoin III";"Retinoid cycle disease events"
JAMg_model_21338.2	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_7324.1	1	Reactome: R-HSA-4615885	"SUMOylation of DNA replication proteins"
JAMg_model_2242.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_18166.1	7	Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-73780;Reactome: R-HSA-76061;Reactome: R-HSA-1834949	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Chain Elongation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"Cytosolic sensors of pathogen-associated DNA"
JAMg_model_5783.1	6	Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-983712;KEGG: 04660+2.7.10.2;Reactome: R-HSA-1433557;Reactome: R-HSA-1222556	"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Ion channel transport";"T cell receptor signaling pathway";"Signaling by SCF-KIT";"ROS and RNS production in phagocytes"
JAMg_model_15311.4	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_8159.5	12	MetaCyc: PWY-6142;MetaCyc: PWY-1861;Reactome: R-HSA-70171;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00710+4.1.2.13;KEGG: 00680+4.1.2.13;KEGG: 00030+4.1.2.13;KEGG: 00051+4.1.2.13;MetaCyc: PWY-7385;MetaCyc: PWY-1042;MetaCyc: PWY-5484	"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Glycolysis";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Methane metabolism";"Pentose phosphate pathway";"Fructose and mannose metabolism";"1,3-propanediol biosynthesis (engineered)";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)"
JAMg_model_10889.3	8	KEGG: 00052+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1	"Galactose metabolism";"Fructose and mannose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Streptomycin biosynthesis";"Starch and sucrose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_10802.1	2	Reactome: R-HSA-432720;Reactome: R-HSA-432722	"Lysosome Vesicle Biogenesis";"Golgi Associated Vesicle Biogenesis"
JAMg_model_10689.4	6	Reactome: R-HSA-429958;Reactome: R-HSA-450604;Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-380994;Reactome: R-HSA-6791226	"mRNA decay by 3' to 5' exoribonuclease";"KSRP (KHSRP) binds and destabilizes mRNA";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_12327.1	24	Reactome: R-HSA-983189;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295	"Kinesins";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation"
JAMg_model_21029.1	15	Reactome: R-HSA-5467340;Reactome: R-HSA-4641262;Reactome: R-HSA-5358747;Reactome: R-HSA-3769402;Reactome: R-HSA-196299;Reactome: R-HSA-5358751;Reactome: R-HSA-5467337;Reactome: R-HSA-5689896;Reactome: R-HSA-5467333;Reactome: R-HSA-5358749;Reactome: R-HSA-195253;Reactome: R-HSA-5467348;Reactome: R-HSA-5339716;Reactome: R-HSA-111465;Reactome: R-HSA-5358752	"AXIN missense mutants destabilize the destruction complex";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"S33 mutants of beta-catenin aren't phosphorylated";"Deactivation of the beta-catenin transactivating complex";"Beta-catenin phosphorylation cascade";"S45 mutants of beta-catenin aren't phosphorylated";"APC truncation mutants have impaired AXIN binding";"Ovarian tumor domain proteases";"APC truncation mutants are not K63 polyubiquitinated";"S37 mutants of beta-catenin aren't phosphorylated";"Degradation of beta-catenin by the destruction complex";"Truncations of AMER1 destabilize the destruction complex";"Misspliced GSK3beta mutants stabilize beta-catenin";"Apoptotic cleavage of cellular proteins";"T41 mutants of beta-catenin aren't phosphorylated"
JAMg_model_20404.1	10	KEGG: 00051+5.3.1.1;MetaCyc: PWY-6142;Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00010+5.3.1.1;Reactome: R-HSA-70263;MetaCyc: PWY-5484;KEGG: 00710+5.3.1.1;KEGG: 00562+5.3.1.1;MetaCyc: PWY-1042	"Fructose and mannose metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Glycerol degradation to butanol";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Carbon fixation in photosynthetic organisms";"Inositol phosphate metabolism";"Glycolysis IV (plant cytosol)"
JAMg_model_1093.1	24	Reactome: R-HSA-418555;Reactome: R-HSA-500657;Reactome: R-HSA-202040;Reactome: R-HSA-6814122;Reactome: R-HSA-392451;Reactome: R-HSA-8964315;Reactome: R-HSA-416476;Reactome: R-HSA-420092;Reactome: R-HSA-418597;Reactome: R-HSA-8964616;Reactome: R-HSA-400042;Reactome: R-HSA-416482;Reactome: R-HSA-456926;Reactome: R-HSA-418592;Reactome: R-HSA-418217;Reactome: R-HSA-381676;Reactome: R-HSA-428930;Reactome: R-HSA-432040;Reactome: R-HSA-418594;Reactome: R-HSA-163359;Reactome: R-HSA-9009391;Reactome: R-HSA-392851;Reactome: R-HSA-392170;Reactome: R-HSA-4086398	"G alpha (s) signalling events";"Presynaptic function of Kainate receptors";"G-protein activation";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"G beta:gamma signalling through PI3Kgamma";"G beta:gamma signalling through BTK";"G alpha (q) signalling events";"Glucagon-type ligand receptors";"G alpha (z) signalling events";"G beta:gamma signalling through CDC42";"Adrenaline,noradrenaline inhibits insulin secretion";"G alpha (12/13) signalling events";"Thrombin signalling through proteinase activated receptors (PARs)";"ADP signalling through P2Y purinoceptor 1";"G beta:gamma signalling through PLC beta";"Glucagon-like Peptide-1 (GLP1) regulates insulin secretion";"Thromboxane signalling through TP receptor";"Vasopressin regulates renal water homeostasis via Aquaporins";"G alpha (i) signalling events";"Glucagon signaling in metabolic regulation";"Extra-nuclear estrogen signaling";"Prostacyclin signalling through prostacyclin receptor";"ADP signalling through P2Y purinoceptor 12";"Ca2+ pathway"
JAMg_model_2173.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_3590.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_13551.1	4	Reactome: R-HSA-983189;Reactome: R-HSA-68884;Reactome: R-HSA-6811434;Reactome: R-HSA-2132295	"Kinesins";"Mitotic Telophase/Cytokinesis";"COPI-dependent Golgi-to-ER retrograde traffic";"MHC class II antigen presentation"
JAMg_model_17671.3	3	Reactome: R-HSA-193648;Reactome: R-HSA-194840;Reactome: R-HSA-416482	"NRAGE signals death through JNK";"Rho GTPase cycle";"G alpha (12/13) signalling events"
JAMg_model_5574.6	2	Reactome: R-HSA-5339700;Reactome: R-HSA-4641265	"TCF7L2 mutants don't bind CTBP";"Repression of WNT target genes"
JAMg_model_19491.4	4	Reactome: R-HSA-947581;Reactome: R-HSA-1362409;KEGG: 00730+2.8.1.7;MetaCyc: PWY-7250	"Molybdenum cofactor biosynthesis";"Mitochondrial iron-sulfur cluster biogenesis";"Thiamine metabolism";"[2Fe-2S] iron-sulfur cluster biosynthesis"
JAMg_model_9473.1	8	MetaCyc: PWY-241;MetaCyc: PWY-5744;MetaCyc: PWY-6142;MetaCyc: PWY-5743;KEGG: 00910+4.2.1.1;MetaCyc: PWY-7117;MetaCyc: PWY-7115;MetaCyc: PWY-5789	"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"Glyoxylate assimilation";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"3-hydroxypropanoate cycle";"Nitrogen metabolism";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle"
JAMg_model_4116.7	3	KEGG: 04658+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16	"Th1 and Th2 cell differentiation";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway"
JAMg_model_17363.1	29	Reactome: R-HSA-167246;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-6782210;Reactome: R-HSA-77075;Reactome: R-HSA-75955;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72086;Reactome: R-HSA-6781823;Reactome: R-HSA-76042;Reactome: R-HSA-73863;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-674695;Reactome: R-HSA-73772;Reactome: R-HSA-167161;Reactome: R-HSA-5696400;Reactome: R-HSA-73776;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-112382;Reactome: R-HSA-75953;Reactome: R-HSA-6796648;Reactome: R-HSA-5696395;Reactome: R-HSA-167200;Reactome: R-HSA-73762	"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"mRNA Capping";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase I Transcription Termination";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase I Promoter Escape";"HIV Transcription Initiation";"Dual Incision in GG-NER";"RNA Polymerase II Promoter Escape";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of Incision Complex in GG-NER";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase I Transcription Initiation"
JAMg_model_16879.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_11978.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-5689880	"Protein ubiquitination";"Ub-specific processing proteases"
JAMg_model_18152.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_10713.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_17283.5	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_6333.1	10	MetaCyc: PWY-7996;KEGG: 00130+2.1.1.163;MetaCyc: PWY-5891;Reactome: R-HSA-2142789;MetaCyc: PWY-5890;MetaCyc: PWY-5849;MetaCyc: PWY-5839;MetaCyc: PWY-5892;MetaCyc: PWY-5844;MetaCyc: PWY-5895	"Menaquinol-4 biosynthesis I";"Ubiquinone and other terpenoid-quinone biosynthesis";"Menaquinol-11 biosynthesis";"Ubiquinol biosynthesis";"Menaquinol-10 biosynthesis";"Menaquinol-6 biosynthesis";"Menaquinol-7 biosynthesis";"Menaquinol-12 biosynthesis";"Menaquinol-9 biosynthesis";"Menaquinol-13 biosynthesis"
JAMg_model_1364.2	1	Reactome: R-HSA-1483101	"Synthesis of PS"
JAMg_model_2157.1	1	Reactome: R-HSA-189451	"Heme biosynthesis"
JAMg_model_18438.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_13230.2	2	MetaCyc: PWY-4261;KEGG: 00561+2.7.1.30	"Glycerol degradation I";"Glycerolipid metabolism"
JAMg_model_21161.4	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes"
JAMg_model_1639.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_5067.4	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_11411.3	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_12220.1	1	Reactome: R-HSA-163841	"Gamma carboxylation, hypusine formation and arylsulfatase activation"
JAMg_model_2446.3	5	Reactome: R-HSA-73762;Reactome: R-HSA-8943724;Reactome: R-HSA-6804758;Reactome: R-HSA-427389;Reactome: R-HSA-3214815	"RNA Polymerase I Transcription Initiation";"Regulation of PTEN gene transcription";"Regulation of TP53 Activity through Acetylation";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"HDACs deacetylate histones"
JAMg_model_19551.2	6	Reactome: R-HSA-4793952;MetaCyc: PWY-7920;MetaCyc: PWY-7426;Reactome: R-HSA-975578;KEGG: 00513+2.4.1.143;KEGG: 00510+2.4.1.143	"Defective MGAT2 causes MGAT2-CDG (CDG-2a)";"Complex N-linked glycan biosynthesis (plants)";"Complex N-linked glycan biosynthesis (vertebrates)";"Reactions specific to the complex N-glycan synthesis pathway";"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis"
JAMg_model_7931.1	14	MetaCyc: PWY-5080;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7725;MetaCyc: PWY-7601;MetaCyc: PWY-7724;Reactome: R-HSA-75876;MetaCyc: PWY-5972;MetaCyc: PWY-7035;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036;KEGG: 00062+2.3.1.199;MetaCyc: PWY-8041	"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Synthesis of very long-chain fatty acyl-CoAs";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Fatty acid elongation";"Ultra-long-chain fatty acid biosynthesis"
JAMg_model_1124.1	3	Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-6811438	"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic"
JAMg_model_2764.3	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_17998.1	2	Reactome: R-HSA-379716;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism"
JAMg_model_8897.6	3	Reactome: R-HSA-1268020;Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Mitochondrial protein import";"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_2047.2	2	Reactome: R-HSA-5576893;Reactome: R-HSA-5576892	"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation"
JAMg_model_1555.2	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5072.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_18508.1	1	Reactome: R-HSA-6787639	"GDP-fucose biosynthesis"
JAMg_model_20540.1	1	Reactome: R-HSA-2564830	"Cytosolic iron-sulfur cluster assembly"
JAMg_model_1151.8	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_21325.1	1	Reactome: R-HSA-2024096	"HS-GAG degradation"
JAMg_model_6758.2	7	Reactome: R-HSA-71403;MetaCyc: PWY-5084;KEGG: 00380+2.3.1.61;KEGG: 00310+2.3.1.61;KEGG: 00020+2.3.1.61;Reactome: R-HSA-71064;Reactome: R-HSA-389661	"Citric acid cycle (TCA cycle)";"2-oxoglutarate decarboxylation to succinyl-CoA";"Tryptophan metabolism";"Lysine degradation";"Citrate cycle (TCA cycle)";"Lysine catabolism";"Glyoxylate metabolism and glycine degradation"
JAMg_model_16031.1	7	Reactome: R-HSA-2467813;Reactome: R-HSA-9018519;Reactome: R-HSA-2500257;Reactome: R-HSA-3108214;Reactome: R-HSA-2468052;Reactome: R-HSA-1221632;Reactome: R-HSA-2470946	"Separation of Sister Chromatids";"Estrogen-dependent gene expression";"Resolution of Sister Chromatid Cohesion";"SUMOylation of DNA damage response and repair proteins";"Establishment of Sister Chromatid Cohesion";"Meiotic synapsis";"Cohesin Loading onto Chromatin"
JAMg_model_9932.3	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_11724.3	13	Reactome: R-HSA-156590;MetaCyc: PWY-6842;KEGG: 00053+1.8.5.1;MetaCyc: PWY-7112;MetaCyc: PWY-2261;KEGG: 00983+2.5.1.18;MetaCyc: PWY-7533;MetaCyc: PWY-4061;KEGG: 00480+2.5.1.18+1.8.5.1;Reactome: R-HSA-196836;KEGG: 00980+2.5.1.18;KEGG: 00982+2.5.1.18;MetaCyc: PWY-6370	"Glutathione conjugation";"Glutathione-mediated detoxification II";"Ascorbate and aldarate metabolism";"4-hydroxy-2-nonenal detoxification";"Ascorbate glutathione cycle";"Drug metabolism - other enzymes";"Gliotoxin biosynthesis";"Glutathione-mediated detoxification I";"Glutathione metabolism";"Vitamin C (ascorbate) metabolism";"Metabolism of xenobiotics by cytochrome P450";"Drug metabolism - cytochrome P450";"Ascorbate recycling (cytosolic)"
JAMg_model_16078.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_10602.1	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_6357.1	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_18135.2	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_21190.1	13	Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Peptide chain elongation";"Viral mRNA Translation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_8900.2	2	Reactome: R-HSA-1268020;Reactome: R-HSA-71403	"Mitochondrial protein import";"Citric acid cycle (TCA cycle)"
JAMg_model_15154.2	1	KEGG: 00051+4.2.1.68	"Fructose and mannose metabolism"
JAMg_model_10797.3	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_7364.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-8951664	"Neutrophil degranulation";"Neddylation"
JAMg_model_10890.1	3	Reactome: R-HSA-8951664;Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Neddylation";"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_18868.2	4	Reactome: R-HSA-72731;KEGG: 00270+5.3.1.23;MetaCyc: PWY-4361;MetaCyc: PWY-7174	"Recycling of eIF2:GDP";"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II"
JAMg_model_2848.1	12	MetaCyc: PWY-5538;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5690;MetaCyc: PWY-7384;MetaCyc: PWY-6728;MetaCyc: PWY-5392;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00020+6.2.1.5;KEGG: 00640+6.2.1.5;MetaCyc: PWY-5537;KEGG: 00720+6.2.1.5	"Pyruvate fermentation to acetate VI";"C5-Branched dibasic acid metabolism";"TCA cycle II (plants and fungi)";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Methylaspartate cycle";"Reductive TCA cycle II";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Citrate cycle (TCA cycle)";"Propanoate metabolism";"Pyruvate fermentation to acetate V";"Carbon fixation pathways in prokaryotes"
JAMg_model_9525.1	10	KEGG: 04926+2.7.11.1;Reactome: R-HSA-5689880;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-3214847;KEGG: 05163+2.7.11.1;Reactome: R-HSA-201722	"Relaxin signaling pathway";"Ub-specific processing proteases";"Human papillomavirus infection";"Thermogenesis";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Human immunodeficiency virus 1 infection";"HATs acetylate histones";"Human cytomegalovirus infection";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_6678.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_13056.2	13	Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956	"Peptide chain elongation";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_9732.1	7	KEGG: 00520+3.5.99.6;MetaCyc: PWY-6855;KEGG: 00030+3.1.1.31;MetaCyc: PWY-5514;MetaCyc: PWY-6906;Reactome: R-HSA-71336;MetaCyc: PWY-8004	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation I (archaea)";"Pentose phosphate pathway";"UDP-N-acetyl-D-galactosamine biosynthesis II";"Chitin derivatives degradation";"Pentose phosphate pathway";"Entner-Doudoroff pathway I"
JAMg_model_15092.1	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_8436.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_1596.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_823.1	2	Reactome: R-HSA-418890;Reactome: R-HSA-3295583	"Role of second messengers in netrin-1 signaling";"TRP channels"
JAMg_model_2446.5	5	Reactome: R-HSA-6804758;Reactome: R-HSA-427389;Reactome: R-HSA-3214815;Reactome: R-HSA-8943724;Reactome: R-HSA-73762	"Regulation of TP53 Activity through Acetylation";"ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression";"HDACs deacetylate histones";"Regulation of PTEN gene transcription";"RNA Polymerase I Transcription Initiation"
JAMg_model_20989.2	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_5303.5	4	KEGG: 00510+2.7.1.108;MetaCyc: PWY-6129;Reactome: R-HSA-4755583;Reactome: R-HSA-446199	"N-Glycan biosynthesis";"Dolichol and dolichyl phosphate biosynthesis";"Defective DOLK causes DOLK-CDG (CDG-1m)";"Synthesis of Dolichyl-phosphate"
JAMg_model_155.4	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_3454.5	3	MetaCyc: PWY-6619;Reactome: R-HSA-74217;KEGG: 00230+2.7.1.20	"Adenine and adenosine salvage VI";"Purine salvage";"Purine metabolism"
JAMg_model_6694.1	1	KEGG: 00010+5.1.3.15	"Glycolysis / Gluconeogenesis"
JAMg_model_3727.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_19162.5	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_19003.4	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_156.3	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_6710.1	1	Reactome: R-HSA-6782315	"tRNA modification in the nucleus and cytosol"
JAMg_model_2003.1	7	Reactome: R-HSA-8854518;Reactome: R-HSA-2565942;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-380270;Reactome: R-HSA-380320;Reactome: R-HSA-380259	"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Recruitment of mitotic centrosome proteins and complexes";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes"
JAMg_model_12749.7	12	Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-2132295;Reactome: R-HSA-9648025;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813	"HCMV Early Events";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"MHC class II antigen presentation";"EML4 and NUDC in mitotic spindle formation";"COPI-mediated anterograde transport";"Separation of Sister Chromatids"
JAMg_model_19888.1	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_8124.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_13788.1	2	Reactome: R-HSA-1660662;Reactome: R-HSA-6798695	"Glycosphingolipid metabolism";"Neutrophil degranulation"
JAMg_model_8047.1	2	Reactome: R-HSA-4090294;Reactome: R-HSA-383280	"SUMOylation of intracellular receptors";"Nuclear Receptor transcription pathway"
JAMg_model_4124.1	12	MetaCyc: PWY-5872;Reactome: R-HSA-2142789;MetaCyc: PWY-5873;MetaCyc: PWY-5855;MetaCyc: PWY-7230;MetaCyc: PWY-6708;KEGG: 00130+2.1.1.222+2.1.1.64;MetaCyc: PWY-5871;MetaCyc: PWY-5857;MetaCyc: PWY-5856;MetaCyc: PWY-7233;MetaCyc: PWY-5870	"Ubiquinol-10 biosynthesis (eukaryotic)";"Ubiquinol biosynthesis";"Ubiquinol-7 biosynthesis (eukaryotic)";"Ubiquinol-7 biosynthesis (prokaryotic)";"Ubiquinol-6 biosynthesis from 4-aminobenzoate (yeast)";"Ubiquinol-8 biosynthesis (prokaryotic)";"Ubiquinone and other terpenoid-quinone biosynthesis";"Ubiquinol-9 biosynthesis (eukaryotic)";"Ubiquinol-10 biosynthesis (prokaryotic)";"Ubiquinol-9 biosynthesis (prokaryotic)";"Ubiquinol-6 bypass biosynthesis (eukaryotic)";"Ubiquinol-8 biosynthesis (eukaryotic)"
JAMg_model_21049.2	1	Reactome: R-HSA-110362	"POLB-Dependent Long Patch Base Excision Repair"
JAMg_model_1565.1	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_18116.1	2	Reactome: R-HSA-163282;Reactome: R-HSA-2151201	"Mitochondrial transcription initiation";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_6046.1	4	Reactome: R-HSA-159236;Reactome: R-HSA-73856;Reactome: R-HSA-72163;Reactome: R-HSA-72187	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination";"mRNA Splicing - Major Pathway";"mRNA 3'-end processing"
JAMg_model_6612.2	1	Reactome: R-HSA-5601884	"PIWI-interacting RNA (piRNA) biogenesis"
JAMg_model_19162.6	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_16027.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_11490.1	3	Reactome: R-HSA-8876725;KEGG: 00310+2.1.1.60;Reactome: R-HSA-2514859	"Protein methylation";"Lysine degradation";"Inactivation, recovery and regulation of the phototransduction cascade"
JAMg_model_9553.1	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_8288.2	4	Reactome: R-HSA-9020702;Reactome: R-HSA-975144;MetaCyc: PWY-7511;Reactome: R-HSA-937039	"Interleukin-1 signaling";"IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation";"Protein ubiquitination";"IRAK1 recruits IKK complex"
JAMg_model_19352.1	2	KEGG: 00511+3.2.1.96;Reactome: R-HSA-532668	"Other glycan degradation";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle"
JAMg_model_3662.5	16	Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226	"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Viral mRNA Translation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_3198.3	1	Reactome: R-HSA-1483191	"Synthesis of PC"
JAMg_model_9955.1	56	Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5610785;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858	"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"GLI3 is processed to GLI3R by the proteasome";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity"
JAMg_model_12435.1	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_4123.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_13050.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_10797.4	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_5740.1	1	Reactome: R-HSA-418594	"G alpha (i) signalling events"
JAMg_model_17154.1	6	Reactome: R-HSA-139915;Reactome: R-HSA-6803211;Reactome: R-HSA-6803207;Reactome: R-HSA-6803205;Reactome: R-HSA-6803204;Reactome: R-HSA-6804759	"Activation of PUMA and translocation to mitochondria";"TP53 Regulates Transcription of Death Receptors and Ligands";"TP53 Regulates Transcription of Caspase Activators and Caspases";"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain";"TP53 Regulates Transcription of Genes Involved in Cytochrome C Release";"Regulation of TP53 Activity through Association with Co-factors"
JAMg_model_9184.8	6	KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;Reactome: R-HSA-114508;MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107	"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Effects of PIP2 hydrolysis";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism"
JAMg_model_19008.1	11	Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-167162;Reactome: R-HSA-5689880;Reactome: R-HSA-167172;Reactome: R-HSA-6804756;Reactome: R-HSA-76042;Reactome: R-HSA-75953;Reactome: R-HSA-3214847;Reactome: R-HSA-73779	"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II HIV Promoter Escape";"Ub-specific processing proteases";"Transcription of the HIV genome";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Initiation";"HATs acetylate histones";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening"
JAMg_model_6805.3	1	Reactome: R-HSA-5635838	"Activation of SMO"
JAMg_model_8992.3	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_16624.1	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_3148.3	8	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Human cytomegalovirus infection";"Signaling by Hippo";"Human immunodeficiency virus 1 infection"
JAMg_model_6653.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_21356.4	9	Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-75953;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-6804756;Reactome: R-HSA-167162;Reactome: R-HSA-167172	"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome"
JAMg_model_9141.4	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_2286.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_12819.1	6	Reactome: R-HSA-9028731;Reactome: R-HSA-5654706;Reactome: R-HSA-5654700;Reactome: R-HSA-5654693;Reactome: R-HSA-5673001;Reactome: R-HSA-5654712	"Activated NTRK2 signals through FRS2 and FRS3";"FRS-mediated FGFR3 signaling";"FRS-mediated FGFR2 signaling";"FRS-mediated FGFR1 signaling";"RAF/MAP kinase cascade";"FRS-mediated FGFR4 signaling"
JAMg_model_3181.1	1	Reactome: R-HSA-159236	"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_6608.2	19	KEGG: 00720+2.3.3.8;MetaCyc: PWY-6728;Reactome: R-HSA-6798695;MetaCyc: PWY-5538;MetaCyc: PWY-5172;Reactome: R-HSA-163765;KEGG: 00720+6.2.1.5;KEGG: 00020+2.3.3.8;MetaCyc: PWY-5392;MetaCyc: PWY-7384;Reactome: R-HSA-75105;MetaCyc: PWY-5690;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5537;Reactome: R-HSA-71403;MetaCyc: PWY-6969;MetaCyc: PWY-5913;KEGG: 00640+6.2.1.5;KEGG: 00020+6.2.1.5	"Carbon fixation pathways in prokaryotes";"Methylaspartate cycle";"Neutrophil degranulation";"Pyruvate fermentation to acetate VI";"Acetyl-coa biosynthesis III (from citrate)";"ChREBP activates metabolic gene expression";"Carbon fixation pathways in prokaryotes";"Citrate cycle (TCA cycle)";"Reductive TCA cycle II";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"Fatty acyl-CoA biosynthesis";"TCA cycle II (plants and fungi)";"C5-Branched dibasic acid metabolism";"Pyruvate fermentation to acetate V";"Citric acid cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Propanoate metabolism";"Citrate cycle (TCA cycle)"
JAMg_model_16071.3	9	Reactome: R-HSA-9649948;Reactome: R-HSA-5674135;Reactome: R-HSA-445355;Reactome: R-HSA-6802948;Reactome: R-HSA-114608;Reactome: R-HSA-6802955;Reactome: R-HSA-6798695;Reactome: R-HSA-6802946;Reactome: R-HSA-6802952	"Signaling downstream of RAS mutants";"MAP2K and MAPK activation";"Smooth Muscle Contraction";"Signaling by high-kinase activity BRAF mutants";"Platelet degranulation";"Paradoxical activation of RAF signaling by kinase inactive BRAF";"Neutrophil degranulation";"Signaling by moderate kinase activity BRAF mutants";"Signaling by BRAF and RAF fusions"
JAMg_model_14501.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_6457.1	1	Reactome: R-HSA-162791	"Attachment of GPI anchor to uPAR"
JAMg_model_5614.2	7	Reactome: R-HSA-3371453;Reactome: R-HSA-983170;Reactome: R-HSA-381183;Reactome: R-HSA-381070;Reactome: R-HSA-114608;Reactome: R-HSA-381042;Reactome: R-HSA-381033	"Regulation of HSF1-mediated heat shock response";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"ATF6 (ATF6-alpha) activates chaperone genes";"IRE1alpha activates chaperones";"Platelet degranulation";"PERK regulates gene expression";"ATF6 (ATF6-alpha) activates chaperones"
JAMg_model_18188.4	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_9755.5	2	Reactome: R-HSA-1483191;Reactome: R-HSA-425366	"Synthesis of PC";"Transport of bile salts and organic acids, metal ions and amine compounds"
JAMg_model_19793.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_13908.1	2	Reactome: R-HSA-73621;Reactome: R-HSA-73614	"Pyrimidine catabolism";"Pyrimidine salvage"
JAMg_model_7864.3	3	Reactome: R-HSA-6811434;Reactome: R-HSA-390471;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Association of TriC/CCT with target proteins during biosynthesis";"Kinesins"
JAMg_model_14329.1	2	Reactome: R-HSA-975957;Reactome: R-HSA-975956	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)"
JAMg_model_19376.2	5	Reactome: R-HSA-212300;KEGG: 00270+2.1.1.37;Reactome: R-HSA-4655427;Reactome: R-HSA-427413;Reactome: R-HSA-5334118	"PRC2 methylates histones and DNA";"Cysteine and methionine metabolism";"SUMOylation of DNA methylation proteins";"NoRC negatively regulates rRNA expression";"DNA methylation"
JAMg_model_13414.1	4	KEGG: 00600+3.5.1.23;MetaCyc: PWY-7119;MetaCyc: PWY-6483;Reactome: R-HSA-1660662	"Sphingolipid metabolism";"Ceramide and sphingolipid recycling and degradation (yeast)";"Ceramide degradation (generic)";"Glycosphingolipid metabolism"
JAMg_model_18152.4	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_15465.2	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_137.1	6	KEGG: 00290+4.2.1.33;Reactome: R-HSA-71403;KEGG: 00020+4.2.1.3;KEGG: 00630+4.2.1.3;Reactome: R-HSA-1268020;KEGG: 00720+4.2.1.3	"Valine, leucine and isoleucine biosynthesis";"Citric acid cycle (TCA cycle)";"Citrate cycle (TCA cycle)";"Glyoxylate and dicarboxylate metabolism";"Mitochondrial protein import";"Carbon fixation pathways in prokaryotes"
JAMg_model_1689.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_4423.1	4	MetaCyc: PWY-5737;KEGG: 00330+1.5.5.2;Reactome: R-HSA-70688;MetaCyc: PWY-6922	"(5R)-carbapenem carboxylate biosynthesis";"Arginine and proline metabolism";"Proline catabolism";"L-Ndelta-acetylornithine biosynthesis"
JAMg_model_974.3	2	Reactome: R-HSA-5223345;Reactome: R-HSA-425393	"Miscellaneous transport and binding events";"Transport of inorganic cations/anions and amino acids/oligopeptides"
JAMg_model_16889.2	6	MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-7656	"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis"
JAMg_model_450.3	1	Reactome: R-HSA-8964038	"LDL clearance"
JAMg_model_4604.1	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_715.3	1	Reactome: R-HSA-8854691	"Interleukin-20 family signaling"
JAMg_model_17015.3	1	Reactome: R-HSA-5689880	"Ub-specific processing proteases"
JAMg_model_797.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_4998.2	1	Reactome: R-HSA-162658	"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_2683.2	2	Reactome: R-HSA-2142753;KEGG: 00970+6.3.5.7	"Arachidonic acid metabolism";"Aminoacyl-tRNA biosynthesis"
JAMg_model_12948.2	1	Reactome: R-HSA-390522	"Striated Muscle Contraction"
JAMg_model_17901.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_11740.6	9	Reactome: R-HSA-68952;Reactome: R-HSA-69166;Reactome: R-HSA-69091;Reactome: R-HSA-174430;Reactome: R-HSA-174411;Reactome: R-HSA-6784531;Reactome: R-HSA-68962;Reactome: R-HSA-69183;Reactome: R-HSA-113501	"DNA replication initiation";"Removal of the Flap Intermediate";"Polymerase switching";"Telomere C-strand synthesis initiation";"Polymerase switching on the C-strand of the telomere";"tRNA processing in the nucleus";"Activation of the pre-replicative complex";"Processive synthesis on the lagging strand";"Inhibition of replication initiation of damaged DNA by RB1/E2F1"
JAMg_model_17459.2	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_855.3	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_21260.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_20853.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_2512.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_21183.3	6	KEGG: 00040+1.1.1.22;KEGG: 00520+1.1.1.22;KEGG: 00053+1.1.1.22;MetaCyc: PWY-7346;Reactome: R-HSA-173599;MetaCyc: PWY-7820	"Pentose and glucuronate interconversions";"Amino sugar and nucleotide sugar metabolism";"Ascorbate and aldarate metabolism";"UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)";"Formation of the active cofactor, UDP-glucuronate";"Teichuronic acid biosynthesis (B. subtilis 168)"
JAMg_model_3368.1	1	Reactome: R-HSA-430039	"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_10342.1	2	Reactome: R-HSA-164843;Reactome: R-HSA-5693571	"2-LTR circle formation";"Nonhomologous End-Joining (NHEJ)"
JAMg_model_1988.2	1	Reactome: R-HSA-5656169	"Termination of translesion DNA synthesis"
JAMg_model_20129.1	13	MetaCyc: PWY-7112;KEGG: 00053+1.8.5.1;Reactome: R-HSA-156590;MetaCyc: PWY-6842;MetaCyc: PWY-4061;MetaCyc: PWY-7533;MetaCyc: PWY-2261;KEGG: 00983+2.5.1.18;Reactome: R-HSA-196836;KEGG: 00480+2.5.1.18+1.8.5.1;MetaCyc: PWY-6370;KEGG: 00982+2.5.1.18;KEGG: 00980+2.5.1.18	"4-hydroxy-2-nonenal detoxification";"Ascorbate and aldarate metabolism";"Glutathione conjugation";"Glutathione-mediated detoxification II";"Glutathione-mediated detoxification I";"Gliotoxin biosynthesis";"Ascorbate glutathione cycle";"Drug metabolism - other enzymes";"Vitamin C (ascorbate) metabolism";"Glutathione metabolism";"Ascorbate recycling (cytosolic)";"Drug metabolism - cytochrome P450";"Metabolism of xenobiotics by cytochrome P450"
JAMg_model_7757.3	1	Reactome: R-HSA-418594	"G alpha (i) signalling events"
JAMg_model_14134.1	1	KEGG: 00480+3.4.11.1	"Glutathione metabolism"
JAMg_model_9895.8	10	MetaCyc: PWY-6317;MetaCyc: PWY-7344;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6527;MetaCyc: PWY-3821;MetaCyc: PWY-6397;Reactome: R-HSA-70370;MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2;Reactome: R-HSA-5609977	"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis";"Galactose metabolism";"Stachyose degradation";"D-galactose detoxification";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Galactose catabolism";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)"
JAMg_model_5081.1	7	Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-6804756;Reactome: R-HSA-5693607;Reactome: R-HSA-5685938;Reactome: R-HSA-6783310;Reactome: R-HSA-176187	"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends";"HDR through Single Strand Annealing (SSA)";"Fanconi Anemia Pathway";"Activation of ATR in response to replication stress"
JAMg_model_20205.3	2	KEGG: 00627+3.6.1.7;KEGG: 00620+3.6.1.7	"Aminobenzoate degradation";"Pyruvate metabolism"
JAMg_model_2483.1	16	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957	"Viral mRNA Translation";"Peptide chain elongation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_20614.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_2931.1	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_7496.3	4	Reactome: R-HSA-983231;Reactome: R-HSA-2586552;Reactome: R-HSA-982772;Reactome: R-HSA-1170546	"Factors involved in megakaryocyte development and platelet production";"Signaling by Leptin";"Growth hormone receptor signaling";"Prolactin receptor signaling"
JAMg_model_2887.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_10101.1	3	Reactome: R-HSA-5620916;Reactome: R-HSA-1445148;Reactome: R-HSA-264876	"VxPx cargo-targeting to cilium";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing"
JAMg_model_20428.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_17734.2	5	MetaCyc: PWY-5189;Reactome: R-HSA-189451;KEGG: 00860+4.2.1.24;MetaCyc: PWY-5188;Reactome: R-HSA-6798695	"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis I (from glutamate)";"Neutrophil degranulation"
JAMg_model_19272.3	2	Reactome: R-HSA-70921;KEGG: 00340+2.1.1.22	"Histidine catabolism";"Histidine metabolism"
JAMg_model_7362.4	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_14960.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_12139.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_12417.1	1	Reactome: R-HSA-3000171	"Non-integrin membrane-ECM interactions"
JAMg_model_16816.1	1	Reactome: R-HSA-70895	"Branched-chain amino acid catabolism"
JAMg_model_16933.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_11685.3	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_21185.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_3571.1	5	Reactome: R-HSA-6798695;KEGG: 00561+2.3.1.20;Reactome: R-HSA-75109;KEGG: 00073+2.3.1.20;Reactome: R-HSA-1482883	"Neutrophil degranulation";"Glycerolipid metabolism";"Triglyceride biosynthesis";"Cutin, suberine and wax biosynthesis";"Acyl chain remodeling of DAG and TAG"
JAMg_model_19550.1	56	Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-5610785;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-4641258;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815	"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"GLI3 is processed to GLI3R by the proteasome";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Degradation of DVL";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D"
JAMg_model_8698.7	22	Reactome: R-HSA-75876;MetaCyc: PWY-8041;MetaCyc: PWY-7619;MetaCyc: PWY-7728;MetaCyc: PWY-7592;MetaCyc: PWY-7725;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7606;MetaCyc: PWY-6958;MetaCyc: PWY-7726;MetaCyc: PWY-7035;MetaCyc: PWY-5353;MetaCyc: PWY-7727;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7049;MetaCyc: PWY-5080;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7053	"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Juniperonate biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Fatty acid elongation";"Docosahexaenoate biosynthesis I (lower eukaryotes)"
JAMg_model_6160.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_16322.1	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_2007.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_17235.1	2	KEGG: 04660+2.7.10.2;Reactome: R-HSA-1433557	"T cell receptor signaling pathway";"Signaling by SCF-KIT"
JAMg_model_20541.1	1	Reactome: R-HSA-2564830	"Cytosolic iron-sulfur cluster assembly"
JAMg_model_6030.3	2	Reactome: R-HSA-5689880;Reactome: R-HSA-1632852	"Ub-specific processing proteases";"Macroautophagy"
JAMg_model_18100.4	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_4970.2	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_15870.1	8	KEGG: 00051+2.7.1.1;KEGG: 00524+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00052+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1;KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1	"Fructose and mannose metabolism";"Neomycin, kanamycin and gentamicin biosynthesis";"Glycolysis / Gluconeogenesis";"Galactose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism";"Streptomycin biosynthesis";"Starch and sucrose metabolism"
JAMg_model_7416.1	1	Reactome: R-HSA-2468052	"Establishment of Sister Chromatid Cohesion"
JAMg_model_17383.1	8	Reactome: R-HSA-174430;Reactome: R-HSA-174411;Reactome: R-HSA-68952;Reactome: R-HSA-69091;Reactome: R-HSA-69166;Reactome: R-HSA-68962;Reactome: R-HSA-69183;Reactome: R-HSA-113501	"Telomere C-strand synthesis initiation";"Polymerase switching on the C-strand of the telomere";"DNA replication initiation";"Polymerase switching";"Removal of the Flap Intermediate";"Activation of the pre-replicative complex";"Processive synthesis on the lagging strand";"Inhibition of replication initiation of damaged DNA by RB1/E2F1"
JAMg_model_6423.2	7	KEGG: 00680+3.1.3.11;KEGG: 00010+3.1.3.11;MetaCyc: PWY-5484;KEGG: 00051+3.1.3.11;Reactome: R-HSA-70263;KEGG: 00710+3.1.3.11;KEGG: 00030+3.1.3.11	"Methane metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Fructose and mannose metabolism";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Pentose phosphate pathway"
JAMg_model_1718.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_13295.4	5	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;Reactome: R-HSA-176407;KEGG: 05235+3.1.3.16;Reactome: R-HSA-5687128	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"MAPK6/MAPK4 signaling"
JAMg_model_18325.6	2	Reactome: R-HSA-390522;Reactome: R-HSA-445355	"Striated Muscle Contraction";"Smooth Muscle Contraction"
JAMg_model_8910.8	2	Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_4487.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_7838.1	1	Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_10958.1	4	Reactome: R-HSA-1237112;KEGG: 00270+5.3.1.23;MetaCyc: PWY-7174;MetaCyc: PWY-4361	"Methionine salvage pathway";"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I"
JAMg_model_1363.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_17536.1	3	MetaCyc: PWY-6854;Reactome: R-HSA-3299685;Reactome: R-HSA-3214847	"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species";"HATs acetylate histones"
JAMg_model_18181.1	13	Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72706;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012	"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Viral mRNA Translation";"Peptide chain elongation";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_9606.1	11	Reactome: R-HSA-5693607;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-6804756;Reactome: R-HSA-69166;Reactome: R-HSA-5693568;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-174437;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554	"Processing of DNA double-strand break ends";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Regulation of TP53 Activity through Phosphorylation";"Removal of the Flap Intermediate";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Removal of the Flap Intermediate from the C-strand";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_19759.1	3	Reactome: R-HSA-196807;Reactome: R-HSA-74259;Reactome: R-HSA-73621	"Nicotinate metabolism";"Purine catabolism";"Pyrimidine catabolism"
JAMg_model_2854.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_3663.2	5	KEGG: 00240+2.7.1.21;MetaCyc: PWY-7199;Reactome: R-HSA-69205;Reactome: R-HSA-73614;KEGG: 00983+2.7.1.21	"Pyrimidine metabolism";"Pyrimidine deoxyribonucleosides salvage";"G1/S-Specific Transcription";"Pyrimidine salvage";"Drug metabolism - other enzymes"
JAMg_model_16720.2	2	Reactome: R-HSA-2142691;Reactome: R-HSA-2142700	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Synthesis of Lipoxins (LX)"
JAMg_model_6151.2	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_6212.1	1	Reactome: R-HSA-69273	"Cyclin A/B1/B2 associated events during G2/M transition"
JAMg_model_16619.1	3	MetaCyc: PWY-6368;KEGG: 04070+3.1.3.78;MetaCyc: PWY-6367	"3-phosphoinositide degradation";"Phosphatidylinositol signaling system";"D-myo-inositol-5-phosphate metabolism"
JAMg_model_13339.2	1	Reactome: R-HSA-388844	"Receptor-type tyrosine-protein phosphatases"
JAMg_model_19036.2	11	MetaCyc: PWY-6549;Reactome: R-HSA-71403;MetaCyc: PWY-5913;KEGG: 00020+1.1.1.42;MetaCyc: PWY-6969;KEGG: 00720+1.1.1.42;MetaCyc: PWY-7254;KEGG: 00480+1.1.1.42;MetaCyc: PWY-7124;MetaCyc: PWY-7268;MetaCyc: PWY-6728	"L-glutamine biosynthesis III";"Citric acid cycle (TCA cycle)";"Partial TCA cycle (obligate autotrophs)";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Carbon fixation pathways in prokaryotes";"TCA cycle VII (acetate-producers)";"Glutathione metabolism";"Ethylene biosynthesis V (engineered)";"NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)";"Methylaspartate cycle"
JAMg_model_8054.1	6	Reactome: R-HSA-69052;Reactome: R-HSA-176187;Reactome: R-HSA-68867;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68949	"Switching of origins to a post-replicative state";"Activation of ATR in response to replication stress";"Assembly of the pre-replicative complex";"Unwinding of DNA";"Activation of the pre-replicative complex";"Orc1 removal from chromatin"
JAMg_model_11895.7	5	MetaCyc: PWY-7159;MetaCyc: PWY-7766;Reactome: R-HSA-189451;KEGG: 00860+4.1.1.37;MetaCyc: PWY-5531	"3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)";"Heme b biosynthesis IV (Gram-positive bacteria)";"Heme biosynthesis";"Porphyrin and chlorophyll metabolism";"3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)"
JAMg_model_11485.1	4	MetaCyc: PWY-6834;Reactome: R-HSA-351202;KEGG: 00330+4.1.1.50;KEGG: 00270+4.1.1.50	"Spermidine biosynthesis III";"Metabolism of polyamines";"Arginine and proline metabolism";"Cysteine and methionine metabolism"
JAMg_model_9658.1	33	Reactome: R-HSA-68877;Reactome: R-HSA-3108214;Reactome: R-HSA-4615885;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-3232142;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-4570464;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-159236;Reactome: R-HSA-5663220;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-170822;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-4551638;Reactome: R-HSA-159227;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-168276	"Mitotic Prometaphase";"SUMOylation of DNA damage response and repair proteins";"SUMOylation of DNA replication proteins";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of ubiquitinylation proteins";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"SUMOylation of RNA binding proteins";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RHO GTPases Activate Formins";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"SUMOylation of chromatin organization proteins";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"NS1 Mediated Effects on Host Pathways"
JAMg_model_15441.9	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_14694.2	5	Reactome: R-HSA-427413;Reactome: R-HSA-4655427;Reactome: R-HSA-212300;KEGG: 00270+2.1.1.37;Reactome: R-HSA-5334118	"NoRC negatively regulates rRNA expression";"SUMOylation of DNA methylation proteins";"PRC2 methylates histones and DNA";"Cysteine and methionine metabolism";"DNA methylation"
JAMg_model_15508.4	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_4348.1	1	Reactome: R-HSA-211945	"Phase I - Functionalization of compounds"
JAMg_model_480.6	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_8595.1	3	Reactome: R-HSA-159230;Reactome: R-HSA-73856;Reactome: R-HSA-77588	"Transport of the SLBP Dependant Mature mRNA";"RNA Polymerase II Transcription Termination";"SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs"
JAMg_model_5446.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_18739.1	12	Reactome: R-HSA-9013695;Reactome: R-HSA-9013508;Reactome: R-HSA-2122947;Reactome: R-HSA-2894862;Reactome: R-HSA-2644606;Reactome: R-HSA-350054;Reactome: R-HSA-73762;Reactome: R-HSA-210744;Reactome: R-HSA-5250924;Reactome: R-HSA-1912408;Reactome: R-HSA-8941856;Reactome: R-HSA-3214847	"NOTCH4 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Notch-HLH transcription pathway";"RNA Polymerase I Transcription Initiation";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"B-WICH complex positively regulates rRNA expression";"Pre-NOTCH Transcription and Translation";"RUNX3 regulates NOTCH signaling";"HATs acetylate histones"
JAMg_model_8855.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_20212.1	27	Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-4570464;Reactome: R-HSA-3232142;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-168333;Reactome: R-HSA-3108214;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-159230;Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168271;Reactome: R-HSA-159227;Reactome: R-HSA-6784531;Reactome: R-HSA-168276;Reactome: R-HSA-170822;Reactome: R-HSA-159236;Reactome: R-HSA-4085377;Reactome: R-HSA-4551638	"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"SUMOylation of RNA binding proteins";"SUMOylation of ubiquitinylation proteins";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"NEP/NS2 Interacts with the Cellular Export Machinery";"SUMOylation of DNA damage response and repair proteins";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"SUMOylation of DNA replication proteins";"Transport of the SLBP Dependant Mature mRNA";"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"Transport of Ribonucleoproteins into the Host Nucleus";"Transport of the SLBP independent Mature mRNA";"tRNA processing in the nucleus";"NS1 Mediated Effects on Host Pathways";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"SUMOylation of SUMOylation proteins";"SUMOylation of chromatin organization proteins"
JAMg_model_10149.2	3	Reactome: R-HSA-5423646;KEGG: 00220+3.5.1.14;Reactome: R-HSA-5579007	"Aflatoxin activation and detoxification";"Arginine biosynthesis";"Defective ACY1 causes encephalopathy"
JAMg_model_8098.1	1	Reactome: R-HSA-163841	"Gamma carboxylation, hypusine formation and arylsulfatase activation"
JAMg_model_1151.3	1	Reactome: R-HSA-8950505	"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_13166.1	3	Reactome: R-HSA-114608;Reactome: R-HSA-381426;Reactome: R-HSA-8957275	"Platelet degranulation";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation"
JAMg_model_4371.2	5	Reactome: R-HSA-6798695;Reactome: R-HSA-3270619;Reactome: R-HSA-164843;Reactome: R-HSA-1834949;Reactome: R-HSA-5693571	"Neutrophil degranulation";"IRF3-mediated induction of type I IFN";"2-LTR circle formation";"Cytosolic sensors of pathogen-associated DNA";"Nonhomologous End-Joining (NHEJ)"
JAMg_model_4937.1	1	Reactome: R-HSA-2470946	"Cohesin Loading onto Chromatin"
JAMg_model_19742.2	3	Reactome: R-HSA-1660661;Reactome: R-HSA-6798695;Reactome: R-HSA-9609523	"Sphingolipid de novo biosynthesis";"Neutrophil degranulation";"Insertion of tail-anchored proteins into the endoplasmic reticulum membrane"
JAMg_model_8153.1	3	KEGG: 00260+3.1.3.3;Reactome: R-HSA-977347;KEGG: 00680+3.1.3.3	"Glycine, serine and threonine metabolism";"Serine biosynthesis";"Methane metabolism"
JAMg_model_6030.2	2	Reactome: R-HSA-1632852;Reactome: R-HSA-5689880	"Macroautophagy";"Ub-specific processing proteases"
JAMg_model_2104.4	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_17314.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_11213.1	8	Reactome: R-HSA-6791226;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1	"Major pathway of rRNA processing in the nucleolus and cytosol";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection"
JAMg_model_11750.1	1	Reactome: R-HSA-6811440	"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_1647.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_14251.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_14030.1	5	Reactome: R-HSA-6798695;MetaCyc: PWY-7185;MetaCyc: PWY-7210;KEGG: 00230+3.6.1.6;KEGG: 00240+3.6.1.6	"Neutrophil degranulation";"UTP and CTP dephosphorylation I";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Purine metabolism";"Pyrimidine metabolism"
JAMg_model_12764.3	16	Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Peptide chain elongation";"Viral mRNA Translation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_1229.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_16249.1	2	Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_1964.1	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_16208.4	5	Reactome: R-HSA-9029558;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-75105;Reactome: R-HSA-2426168	"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"Fatty acyl-CoA biosynthesis";"Activation of gene expression by SREBF (SREBP)"
JAMg_model_4874.1	1	Reactome: R-HSA-8873719	"RAB geranylgeranylation"
JAMg_model_1324.1	7	Reactome: R-HSA-1483148;KEGG: 00564+3.1.4.4;MetaCyc: PWY-3561;Reactome: R-HSA-1483166;MetaCyc: PWY-7039;Reactome: R-HSA-2029485;KEGG: 00565+3.1.4.4	"Synthesis of PG";"Glycerophospholipid metabolism";"Choline biosynthesis III";"Synthesis of PA";"Phosphatidate metabolism, as a signaling molecule";"Role of phospholipids in phagocytosis";"Ether lipid metabolism"
JAMg_model_21161.5	7	Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380270;Reactome: R-HSA-8854518;Reactome: R-HSA-2565942	"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"AURKA Activation by TPX2";"Regulation of PLK1 Activity at G2/M Transition"
JAMg_model_8686.2	2	MetaCyc: PWY-7802;MetaCyc: PWY-7799	"N-end rule pathway II (prokaryotic)";"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_18918.7	3	MetaCyc: PWY-5386;KEGG: 00620+4.4.1.5;Reactome: R-HSA-70268	"Methylglyoxal degradation I";"Pyruvate metabolism";"Pyruvate metabolism"
JAMg_model_11905.1	25	Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-380270;Reactome: R-HSA-8955332;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-983189	"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Recruitment of mitotic centrosome proteins and complexes";"Carboxyterminal post-translational modifications of tubulin";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HCMV Early Events";"Mitotic Prometaphase";"Kinesins"
JAMg_model_19855.1	1	Reactome: R-HSA-5625900	"RHO GTPases activate CIT"
JAMg_model_10256.1	1	Reactome: R-HSA-913709	"O-linked glycosylation of mucins"
JAMg_model_18100.3	1	Reactome: R-HSA-1632852	"Macroautophagy"
JAMg_model_7984.1	6	Reactome: R-HSA-68867;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-69052;Reactome: R-HSA-176187	"Assembly of the pre-replicative complex";"Unwinding of DNA";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Switching of origins to a post-replicative state";"Activation of ATR in response to replication stress"
JAMg_model_1770.2	2	Reactome: R-HSA-5576893;Reactome: R-HSA-5576892	"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation"
JAMg_model_21233.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_18681.1	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_8637.3	4	KEGG: 00513+2.4.1.261;Reactome: R-HSA-4720454;Reactome: R-HSA-446193;KEGG: 00510+2.4.1.259+2.4.1.261	"Various types of N-glycan biosynthesis";"Defective ALG9 causes ALG9-CDG (CDG-1l)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"N-Glycan biosynthesis"
JAMg_model_3789.1	2	Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.24	"Lysosomal oligosaccharide catabolism";"Other glycan degradation"
JAMg_model_7691.2	2	MetaCyc: PWY-7511;Reactome: R-HSA-6783310	"Protein ubiquitination";"Fanconi Anemia Pathway"
JAMg_model_7496.5	4	Reactome: R-HSA-983231;Reactome: R-HSA-2586552;Reactome: R-HSA-1170546;Reactome: R-HSA-982772	"Factors involved in megakaryocyte development and platelet production";"Signaling by Leptin";"Prolactin receptor signaling";"Growth hormone receptor signaling"
JAMg_model_13671.6	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_14650.1	2	Reactome: R-HSA-168928;Reactome: R-HSA-70350	"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"Fructose catabolism"
JAMg_model_4089.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5588.8	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_1297.1	2	Reactome: R-HSA-8866423;Reactome: R-HSA-8963888	"VLDL assembly";"Chylomicron assembly"
JAMg_model_1430.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_20334.3	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_1909.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_9991.1	1	Reactome: R-HSA-196819	"Vitamin B1 (thiamin) metabolism"
JAMg_model_2952.1	4	Reactome: R-HSA-73614;KEGG: 00240+2.7.1.48;MetaCyc: PWY-7193;KEGG: 00983+2.7.1.48	"Pyrimidine salvage";"Pyrimidine metabolism";"Pyrimidine ribonucleosides salvage I";"Drug metabolism - other enzymes"
JAMg_model_6649.1	1	Reactome: R-HSA-6811434	"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_18744.1	4	Reactome: R-HSA-1222556;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-983712	"ROS and RNS production in phagocytes";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Ion channel transport"
JAMg_model_19550.4	56	Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978	"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"FCERI mediated NF-kB activation";"UCH proteinases";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)"
JAMg_model_1679.3	22	Reactome: R-HSA-5673000;Reactome: R-HSA-196299;Reactome: R-HSA-5467340;Reactome: R-HSA-389513;Reactome: R-HSA-5339716;Reactome: R-HSA-432142;Reactome: R-HSA-5663220;Reactome: R-HSA-6811558;Reactome: R-HSA-195253;Reactome: R-HSA-141444;Reactome: R-HSA-9648025;Reactome: R-HSA-5358751;Reactome: R-HSA-2500257;Reactome: R-HSA-5358747;Reactome: R-HSA-2467813;Reactome: R-HSA-4641262;Reactome: R-HSA-68877;Reactome: R-HSA-5358752;Reactome: R-HSA-5467348;Reactome: R-HSA-5358749;Reactome: R-HSA-5675221;Reactome: R-HSA-5467337	"RAF activation";"Beta-catenin phosphorylation cascade";"AXIN missense mutants destabilize the destruction complex";"CTLA4 inhibitory signaling";"Misspliced GSK3beta mutants stabilize beta-catenin";"Platelet sensitization by LDL";"RHO GTPases Activate Formins";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"Degradation of beta-catenin by the destruction complex";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"EML4 and NUDC in mitotic spindle formation";"S45 mutants of beta-catenin aren't phosphorylated";"Resolution of Sister Chromatid Cohesion";"S33 mutants of beta-catenin aren't phosphorylated";"Separation of Sister Chromatids";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"Mitotic Prometaphase";"T41 mutants of beta-catenin aren't phosphorylated";"Truncations of AMER1 destabilize the destruction complex";"S37 mutants of beta-catenin aren't phosphorylated";"Negative regulation of MAPK pathway";"APC truncation mutants have impaired AXIN binding"
JAMg_model_10816.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_17317.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_14654.6	2	Reactome: R-HSA-983168;MetaCyc: PWY-7511	"Antigen processing: Ubiquitination & Proteasome degradation";"Protein ubiquitination"
JAMg_model_5596.1	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_19483.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_20921.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_21029.2	15	Reactome: R-HSA-195253;Reactome: R-HSA-5358749;Reactome: R-HSA-5467333;Reactome: R-HSA-5689896;Reactome: R-HSA-5467337;Reactome: R-HSA-111465;Reactome: R-HSA-5358752;Reactome: R-HSA-5339716;Reactome: R-HSA-5467348;Reactome: R-HSA-3769402;Reactome: R-HSA-5358747;Reactome: R-HSA-4641262;Reactome: R-HSA-5467340;Reactome: R-HSA-5358751;Reactome: R-HSA-196299	"Degradation of beta-catenin by the destruction complex";"S37 mutants of beta-catenin aren't phosphorylated";"APC truncation mutants are not K63 polyubiquitinated";"Ovarian tumor domain proteases";"APC truncation mutants have impaired AXIN binding";"Apoptotic cleavage of cellular proteins";"T41 mutants of beta-catenin aren't phosphorylated";"Misspliced GSK3beta mutants stabilize beta-catenin";"Truncations of AMER1 destabilize the destruction complex";"Deactivation of the beta-catenin transactivating complex";"S33 mutants of beta-catenin aren't phosphorylated";"Disassembly of the destruction complex and recruitment of AXIN to the membrane";"AXIN missense mutants destabilize the destruction complex";"S45 mutants of beta-catenin aren't phosphorylated";"Beta-catenin phosphorylation cascade"
JAMg_model_10024.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5587.7	2	Reactome: R-HSA-445095;Reactome: R-HSA-6807878	"Interaction between L1 and Ankyrins";"COPI-mediated anterograde transport"
JAMg_model_12785.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_7404.3	2	Reactome: R-HSA-426486;Reactome: R-HSA-203927	"Small interfering RNA (siRNA) biogenesis";"MicroRNA (miRNA) biogenesis"
JAMg_model_855.2	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_15784.2	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_13054.4	4	KEGG: 00270+5.3.1.23;MetaCyc: PWY-4361;MetaCyc: PWY-7174;Reactome: R-HSA-1237112	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"Methionine salvage pathway"
JAMg_model_5588.10	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_760.1	1	Reactome: R-HSA-913709	"O-linked glycosylation of mucins"
JAMg_model_4891.1	56	Reactome: R-HSA-4641258;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481	"Degradation of DVL";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"UCH proteinases";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints"
JAMg_model_13767.1	6	Reactome: R-HSA-191273;Reactome: R-HSA-2426168;Reactome: R-HSA-446199;MetaCyc: PWY-7391;MetaCyc: PWY-922;KEGG: 00900+4.1.1.33	"Cholesterol biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Synthesis of Dolichyl-phosphate";"Isoprene biosynthesis II (engineered)";"Mevalonate pathway I";"Terpenoid backbone biosynthesis"
JAMg_model_10817.4	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_11074.1	1	Reactome: R-HSA-1362409	"Mitochondrial iron-sulfur cluster biogenesis"
JAMg_model_138.1	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_1106.3	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_1731.1	5	Reactome: R-HSA-166208;Reactome: R-HSA-5674400;Reactome: R-HSA-165159;Reactome: R-HSA-3371571;Reactome: R-HSA-198323	"mTORC1-mediated signalling";"Constitutive Signaling by AKT1 E17K in Cancer";"mTOR signalling";"HSF1-dependent transactivation";"AKT phosphorylates targets in the cytosol"
JAMg_model_6244.1	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_14776.3	2	Reactome: R-HSA-8983711;Reactome: R-HSA-909733	"OAS antiviral response";"Interferon alpha/beta signaling"
JAMg_model_18624.2	13	Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_15725.3	1	KEGG: 00450+1.8.1.9	"Selenocompound metabolism"
JAMg_model_8666.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_16141.1	16	Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689	"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Peptide chain elongation";"Viral mRNA Translation";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits"
JAMg_model_14039.2	9	Reactome: R-HSA-416476;MetaCyc: PWY-6351;MetaCyc: PWY-8052;KEGG: 00562+3.1.4.11;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;MetaCyc: PWY-7039;KEGG: 04070+3.1.4.11;Reactome: R-HSA-112043	"G alpha (q) signalling events";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"Inositol phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"Phosphatidate metabolism, as a signaling molecule";"Phosphatidylinositol signaling system";"PLC beta mediated events"
JAMg_model_13323.5	3	Reactome: R-HSA-110357;Reactome: R-HSA-110330;Reactome: R-HSA-110331	"Displacement of DNA glycosylase by APEX1";"Recognition and association of DNA glycosylase with site containing an affected purine";"Cleavage of the damaged purine"
JAMg_model_11737.2	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_9819.1	6	Reactome: R-HSA-6787450;Reactome: R-HSA-8868766;MetaCyc: PWY-6829;MetaCyc: PWY-7285;MetaCyc: PWY-7286;Reactome: R-HSA-6785470	"tRNA modification in the mitochondrion";"rRNA processing in the mitochondrion";"Trna methylation (yeast)";"Methylwyosine biosynthesis";"7-(3-amino-3-carboxypropyl)-wyosine biosynthesis";"tRNA processing in the mitochondrion"
JAMg_model_12337.1	26	Reactome: R-HSA-9617629;Reactome: R-HSA-381340;Reactome: R-HSA-3214847;Reactome: R-HSA-9013508;Reactome: R-HSA-9013695;Reactome: R-HSA-1368082;Reactome: R-HSA-2122947;Reactome: R-HSA-5621575;Reactome: R-HSA-3134973;Reactome: R-HSA-1989781;Reactome: R-HSA-201722;Reactome: R-HSA-210744;Reactome: R-HSA-933541;Reactome: R-HSA-1912408;Reactome: R-HSA-3899300;Reactome: R-HSA-8941856;Reactome: R-HSA-1234158;Reactome: R-HSA-2894862;Reactome: R-HSA-8866907;Reactome: R-HSA-400253;Reactome: R-HSA-9018519;Reactome: R-HSA-918233;Reactome: R-HSA-5617472;Reactome: R-HSA-3371568;Reactome: R-HSA-9614657;Reactome: R-HSA-2644606	"Regulation of FOXO transcriptional activity by acetylation";"Transcriptional regulation of white adipocyte differentiation";"HATs acetylate histones";"NOTCH3 Intracellular Domain Regulates Transcription";"NOTCH4 Intracellular Domain Regulates Transcription";"RORA activates gene expression";"NOTCH1 Intracellular Domain Regulates Transcription";"CD209 (DC-SIGN) signaling";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production";"PPARA activates gene expression";"Formation of the beta-catenin:TCF transactivating complex";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"TRAF6 mediated IRF7 activation";"Pre-NOTCH Transcription and Translation";"SUMOylation of transcription cofactors";"RUNX3 regulates NOTCH signaling";"Regulation of gene expression by Hypoxia-inducible Factor";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Activation of the TFAP2 (AP-2) family of transcription factors";"Circadian Clock";"Estrogen-dependent gene expression";"TRAF3-dependent IRF activation pathway";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Attenuation phase";"FOXO-mediated transcription of cell death genes";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_21040.1	7	MetaCyc: PWY-5097;MetaCyc: PWY-2942;Reactome: R-HSA-389661;MetaCyc: PWY-8088;KEGG: 00300+4.3.3.7;MetaCyc: PWY-2941;KEGG: 00261+4.3.3.7	"L-lysine biosynthesis VI";"L-lysine biosynthesis III";"Glyoxylate metabolism and glycine degradation";"Dipicolinate biosynthesis";"Lysine biosynthesis";"L-lysine biosynthesis II";"Monobactam biosynthesis"
JAMg_model_10954.1	4	MetaCyc: PWY-3722;KEGG: 00260+1.2.1.8+1.1.99.1;Reactome: R-HSA-6798163;MetaCyc: PWY-7494	"Glycine betaine biosynthesis II (Gram-positive bacteria)";"Glycine, serine and threonine metabolism";"Choline catabolism";"Choline degradation IV"
JAMg_model_4040.1	1	Reactome: R-HSA-975957	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_13658.3	3	Reactome: R-HSA-6806664;MetaCyc: PWY-7999;KEGG: 00130+1.17.4.4	"Metabolism of vitamin K";"Vitamin K-epoxide cycle";"Ubiquinone and other terpenoid-quinone biosynthesis"
JAMg_model_5258.1	2	Reactome: R-HSA-72163;Reactome: R-HSA-430039	"mRNA Splicing - Major Pathway";"mRNA decay by 5' to 3' exoribonuclease"
JAMg_model_5646.1	2	KEGG: 00970+6.1.1.14;Reactome: R-HSA-2151201	"Aminoacyl-tRNA biosynthesis";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_16433.1	5	Reactome: R-HSA-196108;Reactome: R-HSA-2395516;Reactome: R-HSA-1362409;Reactome: R-HSA-5579026;Reactome: R-HSA-211976	"Pregnenolone biosynthesis";"Electron transport from NADPH to Ferredoxin";"Mitochondrial iron-sulfur cluster biogenesis";"Defective CYP11A1 causes Adrenal insufficiency, congenital, with 46,XY sex reversal (AICSR)";"Endogenous sterols"
JAMg_model_19131.6	14	MetaCyc: PWY-8051;KEGG: 00565+3.1.3.4;KEGG: 00561+3.1.3.4;Reactome: R-HSA-1483213;KEGG: 00600+3.1.3.4;MetaCyc: PWY-8053;MetaCyc: PWY-7782;Reactome: R-HSA-1483191;Reactome: R-HSA-75109;Reactome: R-HSA-4419969;MetaCyc: PWY-8052;KEGG: 00564+3.1.3.4;MetaCyc: PWY-8055;MetaCyc: PWY-6453	"Anandamide biosynthesis I";"Ether lipid metabolism";"Glycerolipid metabolism";"Synthesis of PE";"Sphingolipid metabolism";"Anandamide biosynthesis II";"Plasmalogen biosynthesis";"Synthesis of PC";"Triglyceride biosynthesis";"Depolymerisation of the Nuclear Lamina";"2-arachidonoylglycerol biosynthesis";"Glycerophospholipid metabolism";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis"
JAMg_model_4772.1	2	Reactome: R-HSA-3769402;Reactome: R-HSA-201722	"Deactivation of the beta-catenin transactivating complex";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_16846.1	7	KEGG: 00052+3.2.1.23;Reactome: R-HSA-6798695;KEGG: 00511+3.2.1.23;MetaCyc: PWY-6807;KEGG: 00604+3.2.1.23;KEGG: 00600+3.2.1.23;KEGG: 00531+3.2.1.23	"Galactose metabolism";"Neutrophil degranulation";"Other glycan degradation";"Xyloglucan degradation II (exoglucanase)";"Glycosphingolipid biosynthesis - ganglio series";"Sphingolipid metabolism";"Glycosaminoglycan degradation"
JAMg_model_9585.1	6	MetaCyc: PWY-6309;MetaCyc: PWY-5651;KEGG: 00380+1.14.13.9;Reactome: R-HSA-71240;MetaCyc: PWY-7765;MetaCyc: PWY-7717	"L-tryptophan degradation XI (mammalian, via kynurenine)";"L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde";"Tryptophan metabolism";"Tryptophan catabolism";"3-hydroxy-4-methyl-anthranilate biosynthesis II";"3-hydroxy-4-methyl-anthranilate biosynthesis I"
JAMg_model_6127.1	1	Reactome: R-HSA-6782861	"Synthesis of wybutosine at G37 of tRNA(Phe)"
JAMg_model_800.1	3	Reactome: R-HSA-4420097;Reactome: R-HSA-5663213;Reactome: R-HSA-2029482	"VEGFA-VEGFR2 Pathway";"RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation"
JAMg_model_8553.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_18440.4	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_7192.1	4	Reactome: R-HSA-1369062;Reactome: R-HSA-5688399;Reactome: R-HSA-5683826;Reactome: R-HSA-5683678	"ABC transporters in lipid homeostasis";"Defective ABCA3 causes pulmonary surfactant metabolism dysfunction 3 (SMDP3)";"Surfactant metabolism";"Defective ABCA3 causes pulmonary surfactant metabolism dysfunction type 3 (SMDP3)"
JAMg_model_3662.3	16	Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_113.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_10489.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_3676.1	1	Reactome: R-HSA-8873719	"RAB geranylgeranylation"
JAMg_model_2096.1	10	Reactome: R-HSA-5693607;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-6804756;Reactome: R-HSA-5693568;Reactome: R-HSA-3108214;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554	"Processing of DNA double-strand break ends";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Regulation of TP53 Activity through Phosphorylation";"Resolution of D-loop Structures through Holliday Junction Intermediates";"SUMOylation of DNA damage response and repair proteins";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)"
JAMg_model_3895.2	3	Reactome: R-HSA-749476;Reactome: R-HSA-76066;Reactome: R-HSA-76061	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Transcription Initiation From Type 1 Promoter"
JAMg_model_12337.5	26	Reactome: R-HSA-918233;Reactome: R-HSA-9018519;Reactome: R-HSA-9614657;Reactome: R-HSA-2644606;Reactome: R-HSA-5617472;Reactome: R-HSA-3371568;Reactome: R-HSA-400253;Reactome: R-HSA-8866907;Reactome: R-HSA-2894862;Reactome: R-HSA-3899300;Reactome: R-HSA-1912408;Reactome: R-HSA-1234158;Reactome: R-HSA-8941856;Reactome: R-HSA-201722;Reactome: R-HSA-210744;Reactome: R-HSA-933541;Reactome: R-HSA-3134973;Reactome: R-HSA-5621575;Reactome: R-HSA-1989781;Reactome: R-HSA-9013695;Reactome: R-HSA-9013508;Reactome: R-HSA-2122947;Reactome: R-HSA-1368082;Reactome: R-HSA-381340;Reactome: R-HSA-3214847;Reactome: R-HSA-9617629	"TRAF3-dependent IRF activation pathway";"Estrogen-dependent gene expression";"FOXO-mediated transcription of cell death genes";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Attenuation phase";"Circadian Clock";"Activation of the TFAP2 (AP-2) family of transcription factors";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"SUMOylation of transcription cofactors";"Pre-NOTCH Transcription and Translation";"Regulation of gene expression by Hypoxia-inducible Factor";"RUNX3 regulates NOTCH signaling";"Formation of the beta-catenin:TCF transactivating complex";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"TRAF6 mediated IRF7 activation";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production";"CD209 (DC-SIGN) signaling";"PPARA activates gene expression";"NOTCH4 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"NOTCH1 Intracellular Domain Regulates Transcription";"RORA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"HATs acetylate histones";"Regulation of FOXO transcriptional activity by acetylation"
JAMg_model_21043.2	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_18028.2	2	Reactome: R-HSA-1236394;Reactome: R-HSA-977443	"Signaling by ERBB4";"GABA receptor activation"
JAMg_model_13242.3	7	Reactome: R-HSA-8964539;Reactome: R-HSA-5628897;KEGG: 00250+3.5.1.2;Reactome: R-HSA-210500;MetaCyc: PWY-5921;KEGG: 00220+3.5.1.2;KEGG: 00471+3.5.1.2	"Glutamate and glutamine metabolism";"TP53 Regulates Metabolic Genes";"Alanine, aspartate and glutamate metabolism";"Glutamate Neurotransmitter Release Cycle";"Glutaminyl-trnagln biosynthesis via transamidation";"Arginine biosynthesis";"D-Glutamine and D-glutamate metabolism"
JAMg_model_3317.1	6	Reactome: R-HSA-6811438;Reactome: R-HSA-416993;Reactome: R-HSA-6811434;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-204005	"Intra-Golgi traffic";"Trafficking of GluR2-containing AMPA receptors";"COPI-dependent Golgi-to-ER retrograde traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"COPII-mediated vesicle transport"
JAMg_model_17608.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_19296.2	3	Reactome: R-HSA-6804760;Reactome: R-HSA-191859;Reactome: R-HSA-3214858	"Regulation of TP53 Activity through Methylation";"snRNP Assembly";"RMTs methylate histone arginines"
JAMg_model_3561.1	14	MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-7725;MetaCyc: PWY-5080;MetaCyc: PWY-8041;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7619;KEGG: 00062+2.3.1.199;MetaCyc: PWY-5972;MetaCyc: PWY-7035;Reactome: R-HSA-75876	"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Ultra-long-chain fatty acid biosynthesis";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Fatty acid elongation";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs"
JAMg_model_17598.2	11	Reactome: R-HSA-2426168;Reactome: R-HSA-3214858;Reactome: R-HSA-381340;Reactome: R-HSA-400206;Reactome: R-HSA-2151201;Reactome: R-HSA-1368108;Reactome: R-HSA-9018519;Reactome: R-HSA-1989781;Reactome: R-HSA-6804114;Reactome: R-HSA-400253;Reactome: R-HSA-1368082	"Activation of gene expression by SREBF (SREBP)";"RMTs methylate histone arginines";"Transcriptional regulation of white adipocyte differentiation";"Regulation of lipid metabolism by PPARalpha";"Transcriptional activation of mitochondrial biogenesis";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Estrogen-dependent gene expression";"PPARA activates gene expression";"TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest";"Circadian Clock";"RORA activates gene expression"
JAMg_model_18238.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_8371.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_8477.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_5205.2	7	Reactome: R-HSA-380972;Reactome: R-HSA-166208;Reactome: R-HSA-9639288;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-5628897;Reactome: R-HSA-165159	"Energy dependent regulation of mTOR by LKB1-AMPK";"mTORC1-mediated signalling";"Amino acids regulate mTORC1";"Macroautophagy";"Regulation of PTEN gene transcription";"TP53 Regulates Metabolic Genes";"mTOR signalling"
JAMg_model_15950.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_17142.1	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_20787.5	32	Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167238;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-8851708;Reactome: R-HSA-167172;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-73776;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-75955;Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158	"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Signaling by FGFR2 IIIa TM";"Transcription of the HIV genome";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Promoter Escape";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Elongation";"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex"
JAMg_model_3009.2	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_9932.1	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4541.9	7	Reactome: R-HSA-380270;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-5620912;Reactome: R-HSA-380284;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Recruitment of mitotic centrosome proteins and complexes";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Loss of proteins required for interphase microtubule organization from the centrosome";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_20700.1	6	MetaCyc: PWY-6731;MetaCyc: PWY-5941;Reactome: R-HSA-70221;KEGG: 00500+2.4.1.1;MetaCyc: PWY-6737;MetaCyc: PWY-7238	"Starch degradation III";"Glycogen degradation II";"Glycogen breakdown (glycogenolysis)";"Starch and sucrose metabolism";"Starch degradation V";"Sucrose biosynthesis II"
JAMg_model_8725.5	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_20584.1	17	Reactome: R-HSA-196780;MetaCyc: PWY-5789;Reactome: R-HSA-200425;KEGG: 00640+6.4.1.2;Reactome: R-HSA-163765;MetaCyc: PWY-6679;MetaCyc: PWY-5743;KEGG: 00620+6.4.1.2;MetaCyc: PWY-5744;MetaCyc: PWY-5966-1;Reactome: R-HSA-3371599;Reactome: R-HSA-2426168;KEGG: 00061+6.4.1.2;KEGG: 00254+6.4.1.2;MetaCyc: PWY-4381;KEGG: 00720+6.4.1.2;MetaCyc: PWY-6722	"Biotin transport and metabolism";"3-hydroxypropanoate/4-hydroxybutanate cycle";"Carnitine metabolism";"Propanoate metabolism";"ChREBP activates metabolic gene expression";"Jadomycin biosynthesis";"3-hydroxypropanoate cycle";"Pyruvate metabolism";"Glyoxylate assimilation";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Defective HLCS causes multiple carboxylase deficiency";"Activation of gene expression by SREBF (SREBP)";"Fatty acid biosynthesis";"Aflatoxin biosynthesis";"Fatty acid biosynthesis initiation (bacteria and plants)";"Carbon fixation pathways in prokaryotes";"Candicidin biosynthesis"
JAMg_model_619.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_5870.5	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_5266.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_17943.4	5	Reactome: R-HSA-5625740;Reactome: R-HSA-111447;Reactome: R-HSA-75035;Reactome: R-HSA-5628897;Reactome: R-HSA-1445148	"RHO GTPases activate PKNs";"Activation of BAD and translocation to mitochondria";"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"TP53 Regulates Metabolic Genes";"Translocation of SLC2A4 (GLUT4) to the plasma membrane"
JAMg_model_974.2	2	Reactome: R-HSA-5223345;Reactome: R-HSA-425393	"Miscellaneous transport and binding events";"Transport of inorganic cations/anions and amino acids/oligopeptides"
JAMg_model_15911.1	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_7440.1	1	Reactome: R-HSA-8876725	"Protein methylation"
JAMg_model_20438.1	4	Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813	"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids"
JAMg_model_405.2	2	Reactome: R-HSA-5576892;Reactome: R-HSA-445095	"Phase 0 - rapid depolarisation";"Interaction between L1 and Ankyrins"
JAMg_model_20787.4	32	Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-77075;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-73776;Reactome: R-HSA-167152;Reactome: R-HSA-73779;Reactome: R-HSA-72203;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-9018519;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167162;Reactome: R-HSA-75955	"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"RNA Pol II CTD phosphorylation and interaction with CE";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Promoter Escape";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Processing of Capped Intron-Containing Pre-mRNA";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Estrogen-dependent gene expression";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Elongation"
JAMg_model_3561.2	14	MetaCyc: PWY-7725;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-5080;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7035;MetaCyc: PWY-5972;Reactome: R-HSA-75876;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7619	"Arachidonate biosynthesis V (8-detaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Juniperonate biosynthesis"
JAMg_model_11158.1	1	Reactome: R-HSA-8866654	"E3 ubiquitin ligases ubiquitinate target proteins"
JAMg_model_20237.1	1	Reactome: R-HSA-5334118	"DNA methylation"
JAMg_model_14765.1	3	Reactome: R-HSA-2980766;Reactome: R-HSA-4419969;Reactome: R-HSA-2995383	"Nuclear Envelope Breakdown";"Depolymerisation of the Nuclear Lamina";"Initiation of Nuclear Envelope Reformation"
JAMg_model_18043.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_6324.2	10	MetaCyc: PWY-8051;MetaCyc: PWY-7587;MetaCyc: PWY-5667;MetaCyc: PWY-8053;KEGG: 00561+2.3.1.15;MetaCyc: PWY-7411;Reactome: R-HSA-1483166;MetaCyc: PWY-6453;MetaCyc: PWY-8055;KEGG: 00564+2.3.1.15	"Anandamide biosynthesis I";"Oleate biosynthesis III (cyanobacteria)";"CDP-diacylglycerol biosynthesis I";"Anandamide biosynthesis II";"Glycerolipid metabolism";"Phosphatidate biosynthesis (yeast)";"Synthesis of PA";"Stigma estolide biosynthesis";"Palmitoyl ethanolamide biosynthesis";"Glycerophospholipid metabolism"
JAMg_model_17580.5	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_6137.1	33	Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-68877;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-3232142;Reactome: R-HSA-4570464;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-191859;Reactome: R-HSA-168325;Reactome: R-HSA-180746;Reactome: R-HSA-180910;Reactome: R-HSA-9610379;Reactome: R-HSA-159236;Reactome: R-HSA-5663220;Reactome: R-HSA-141444;Reactome: R-HSA-4085377;Reactome: R-HSA-6784531;Reactome: R-HSA-168271;Reactome: R-HSA-170822;Reactome: R-HSA-9609690;Reactome: R-HSA-5619107;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-4551638;Reactome: R-HSA-159227;Reactome: R-HSA-159231;Reactome: R-HSA-3301854;Reactome: R-HSA-168276	"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Mitotic Prometaphase";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of ubiquitinylation proteins";"SUMOylation of RNA binding proteins";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"snRNP Assembly";"Viral Messenger RNA Synthesis";"Nuclear import of Rev protein";"Vpr-mediated nuclear import of PICs";"HCMV Late Events";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RHO GTPases Activate Formins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"SUMOylation of SUMOylation proteins";"tRNA processing in the nucleus";"Transport of Ribonucleoproteins into the Host Nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"HCMV Early Events";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"SUMOylation of chromatin organization proteins";"Transport of the SLBP independent Mature mRNA";"Transport of Mature mRNA Derived from an Intronless Transcript";"Nuclear Pore Complex (NPC) Disassembly";"NS1 Mediated Effects on Host Pathways"
JAMg_model_16039.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_12569.2	13	MetaCyc: PWY-6728;MetaCyc: PWY-7384;MetaCyc: PWY-5690;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5538;KEGG: 00720+6.2.1.5;Reactome: R-HSA-71403;MetaCyc: PWY-5537;KEGG: 00640+6.2.1.5;KEGG: 00020+6.2.1.5;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-5392	"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"TCA cycle II (plants and fungi)";"C5-Branched dibasic acid metabolism";"Pyruvate fermentation to acetate VI";"Carbon fixation pathways in prokaryotes";"Citric acid cycle (TCA cycle)";"Pyruvate fermentation to acetate V";"Propanoate metabolism";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Reductive TCA cycle II"
JAMg_model_14841.3	31	MetaCyc: PWY-7746;MetaCyc: PWY-5367;MetaCyc: PWYG-321;MetaCyc: PWY-7723;MetaCyc: PWY-5366;MetaCyc: PWY-7388;MetaCyc: PWY-7663;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;Reactome: R-HSA-199220;MetaCyc: PWY-5994;MetaCyc: PWY-8047;MetaCyc: PWY-8049;MetaCyc: PWY-7858;MetaCyc: PWY-5971;MetaCyc: PWY-5142;Reactome: R-HSA-163765;Reactome: R-HSA-9029558;MetaCyc: PWY-5147;MetaCyc: PWY-5989;Reactome: R-HSA-75105;MetaCyc: PWY-5973;MetaCyc: PWY-7664;MetaCyc: PWY-5966-1;MetaCyc: PWY-4381;MetaCyc: PWY-6282;MetaCyc: PWY-6113;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-6799;Reactome: R-HSA-2426168;MetaCyc: PWY-6519;MetaCyc: PWY-8012	"Mycobacterial sulfolipid biosynthesis";"Petroselinate biosynthesis";"";"Bacterial bioluminescence";"Palmitoleate biosynthesis II (plants and bacteria)";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Gondoate biosynthesis (anaerobic)";"Fatty acid biosynthesis";"Vitamin B5 (pantothenate) metabolism";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Bryostatin biosynthesis";"Pederin biosynthesis";"(5Z)-dodecenoate biosynthesis II";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Acyl-[acyl-carrier protein] thioesterase pathway";"ChREBP activates metabolic gene expression";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Oleate biosynthesis I (plants)";"Stearate biosynthesis II (bacteria and plants)";"Fatty acyl-CoA biosynthesis";"Cis-vaccenate biosynthesis";"Oleate biosynthesis IV (anaerobic)";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Fatty acid biosynthesis initiation (bacteria and plants)";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Superpathway of mycolate biosynthesis";"Biotin metabolism";"Fatty acid biosynthesis initiation (plant mitochondria)";"Activation of gene expression by SREBF (SREBP)";"8-amino-7-oxononanoate biosynthesis I";"Mupirocin biosynthesis"
JAMg_model_1450.1	13	Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557	"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis"
JAMg_model_20866.4	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_13054.12	3	MetaCyc: PWY-7174;MetaCyc: PWY-4361;KEGG: 00270+5.3.1.23	"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism"
JAMg_model_13394.1	7	MetaCyc: PWY-7886;Reactome: R-HSA-1483213;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7818;MetaCyc: PWY-7782;Reactome: R-HSA-1483191;MetaCyc: PWY-3385	"Cell-surface glycoconjugate-linked phosphocholine biosynthesis";"Synthesis of PE";"Glycerophospholipid metabolism";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)";"Plasmalogen biosynthesis";"Synthesis of PC";"Choline biosynthesis I"
JAMg_model_7141.1	2	Reactome: R-HSA-9603798;Reactome: R-HSA-1369062	"Class I peroxisomal membrane protein import";"ABC transporters in lipid homeostasis"
JAMg_model_20154.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_12919.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_10512.2	10	MetaCyc: PWY-4061;KEGG: 00460+2.3.2.2;MetaCyc: PWY-7112;MetaCyc: PWY-4041;MetaCyc: PWY-6842;MetaCyc: PWY-7559;MetaCyc: PWY-8001;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-5826;KEGG: 00430+2.3.2.2	"Glutathione-mediated detoxification I";"Cyanoamino acid metabolism";"4-hydroxy-2-nonenal detoxification";"Gamma-glutamyl cycle";"Glutathione-mediated detoxification II";"Glutathione degradation (DUG pathway";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Glutathione metabolism";"Hypoglycin biosynthesis";"Taurine and hypotaurine metabolism"
JAMg_model_8758.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_14649.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_11027.1	3	MetaCyc: PWY-5669;KEGG: 00564+4.1.1.65;Reactome: R-HSA-1483213	"Phosphatidylserine and phosphatidylethanolamine biosynthesis I";"Glycerophospholipid metabolism";"Synthesis of PE"
JAMg_model_9473.3	8	MetaCyc: PWY-241;MetaCyc: PWY-5744;MetaCyc: PWY-5743;MetaCyc: PWY-7117;KEGG: 00910+4.2.1.1;MetaCyc: PWY-6142;MetaCyc: PWY-7115;MetaCyc: PWY-5789	"C4 photosynthetic carbon assimilation cycle, NADP-ME type";"Glyoxylate assimilation";"3-hydroxypropanoate cycle";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Nitrogen metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"3-hydroxypropanoate/4-hydroxybutanate cycle"
JAMg_model_20195.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_12772.3	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_17191.1	6	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16;Reactome: R-HSA-2173788;Reactome: R-HSA-163560;Reactome: R-HSA-400253	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation";"Downregulation of TGF-beta receptor signaling";"Triglyceride catabolism";"Circadian Clock"
JAMg_model_21056.1	2	Reactome: R-HSA-6798695;Reactome: R-HSA-936837	"Neutrophil degranulation";"Ion transport by P-type ATPases"
JAMg_model_19953.1	4	Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-6782210;Reactome: R-HSA-6781823	"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Formation of TC-NER Pre-Incision Complex"
JAMg_model_13561.1	5	Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-3928665;Reactome: R-HSA-8856825;Reactome: R-HSA-190873	"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"EPH-ephrin mediated repulsion of cells";"Cargo recognition for clathrin-mediated endocytosis";"Gap junction degradation"
JAMg_model_15583.1	19	Reactome: R-HSA-8964046;Reactome: R-HSA-8963901;Reactome: R-HSA-3000497;Reactome: R-HSA-8964041;Reactome: R-HSA-8866423;Reactome: R-HSA-8963888;Reactome: R-HSA-432142;Reactome: R-HSA-381426;Reactome: R-HSA-975634;Reactome: R-HSA-8964038;Reactome: R-HSA-5686938;Reactome: R-HSA-202733;Reactome: R-HSA-8957275;Reactome: R-HSA-3000480;Reactome: R-HSA-8856828;Reactome: R-HSA-8964026;Reactome: R-HSA-8856825;Reactome: R-HSA-3000471;Reactome: R-HSA-3000484	"VLDL clearance";"Chylomicron remodeling";"Scavenging by Class H Receptors";"LDL remodeling";"VLDL assembly";"Chylomicron assembly";"Platelet sensitization by LDL";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Retinoid metabolism and transport";"LDL clearance";"Regulation of TLR by endogenous ligand";"Cell surface interactions at the vascular wall";"Post-translational protein phosphorylation";"Scavenging by Class A Receptors";"Clathrin-mediated endocytosis";"Chylomicron clearance";"Cargo recognition for clathrin-mediated endocytosis";"Scavenging by Class B Receptors";"Scavenging by Class F Receptors"
JAMg_model_20225.1	1	Reactome: R-HSA-191859	"snRNP Assembly"
JAMg_model_13723.1	3	KEGG: 00500+2.4.1.11;MetaCyc: PWY-5067;Reactome: R-HSA-3322077	"Starch and sucrose metabolism";"Glycogen biosynthesis II (from UDP-D-Glucose)";"Glycogen synthesis"
JAMg_model_15508.7	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_16232.5	4	Reactome: R-HSA-156581;KEGG: 00270+2.5.1.6;MetaCyc: PWY-5041;MetaCyc: PWY-5912	"Methylation";"Cysteine and methionine metabolism";"S-adenosyl-L-methionine cycle II";"2'-deoxymugineic acid phytosiderophore biosynthesis"
JAMg_model_20499.1	5	Reactome: R-HSA-174490;Reactome: R-HSA-9610379;Reactome: R-HSA-162588;Reactome: R-HSA-917729;Reactome: R-HSA-9615710	"Membrane binding and targetting of GAG proteins";"HCMV Late Events";"Budding and maturation of HIV virion";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Late endosomal microautophagy"
JAMg_model_6830.1	10	KEGG: 00670+1.5.1.5+3.5.4.9;KEGG: 00720+1.5.1.5+3.5.4.9;MetaCyc: PWY-2201;MetaCyc: PWY-5497;MetaCyc: PWY-1722;Reactome: R-HSA-196757;MetaCyc: PWY-5030;MetaCyc: PWY-7909;MetaCyc: PWY-6613;MetaCyc: PWY-3841	"One carbon pool by folate";"Carbon fixation pathways in prokaryotes";"Folate transformations I";"Purine nucleobases degradation II (anaerobic)";"Formate assimilation into 5,10-methylenetetrahydrofolate";"Metabolism of folate and pterines";"L-histidine degradation III";"Formaldehyde oxidation VII (THF pathway)";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Folate transformations II (plants)"
JAMg_model_11169.1	1	Reactome: R-HSA-426486	"Small interfering RNA (siRNA) biogenesis"
JAMg_model_5030.1	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_19084.4	5	Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-159231;Reactome: R-HSA-77595;Reactome: R-HSA-73856	"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"Transport of Mature mRNA Derived from an Intronless Transcript";"Processing of Intronless Pre-mRNAs";"RNA Polymerase II Transcription Termination"
JAMg_model_11882.4	1	Reactome: R-HSA-196843	"Vitamin B2 (riboflavin) metabolism"
JAMg_model_18325.2	2	Reactome: R-HSA-445355;Reactome: R-HSA-390522	"Smooth Muscle Contraction";"Striated Muscle Contraction"
JAMg_model_11650.2	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_14607.1	6	MetaCyc: PWY-7782;Reactome: R-HSA-9640463;MetaCyc: PWY-7656;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733	"Plasmalogen biosynthesis";"Wax biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis"
JAMg_model_2826.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-5576893	"Phase 0 - rapid depolarisation";"Phase 2 - plateau phase"
JAMg_model_19885.1	2	Reactome: R-HSA-1236974;Reactome: R-HSA-1799339	"ER-Phagosome pathway";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_8131.2	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_15216.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_18330.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_12303.2	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_11092.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_1168.1	2	Reactome: R-HSA-2151201;Reactome: R-HSA-6793080	"Transcriptional activation of mitochondrial biogenesis";"rRNA modification in the mitochondrion"
JAMg_model_12148.3	1	Reactome: R-HSA-2299718	"Condensation of Prophase Chromosomes"
JAMg_model_10298.1	3	KEGG: 00643+1.13.11.5;Reactome: R-HSA-8963684;KEGG: 00350+1.13.11.5	"Styrene degradation";"Tyrosine catabolism";"Tyrosine metabolism"
JAMg_model_14760.2	2	Reactome: R-HSA-1483148;Reactome: R-HSA-1483166	"Synthesis of PG";"Synthesis of PA"
JAMg_model_19272.4	2	Reactome: R-HSA-70921;KEGG: 00340+2.1.1.22	"Histidine catabolism";"Histidine metabolism"
JAMg_model_4874.2	1	Reactome: R-HSA-8873719	"RAB geranylgeranylation"
JAMg_model_14869.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_8550.1	14	MetaCyc: PWY-7619;MetaCyc: PWY-6598;MetaCyc: PWY-7036;KEGG: 00062+2.3.1.199;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-5972;MetaCyc: PWY-7035;MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-5080;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7725	"Juniperonate biosynthesis";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Fatty acid elongation";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Stearate biosynthesis I (animals)";"(9Z)-tricosene biosynthesis";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis V (8-detaturase, mammals)"
JAMg_model_13852.1	8	MetaCyc: PWY-5723;KEGG: 00710+5.3.1.6;KEGG: 00051+5.3.1.6;Reactome: R-HSA-71336;KEGG: 00030+5.3.1.6;Reactome: R-HSA-5659996;MetaCyc: PWY-1861;Reactome: R-HSA-6791461	"Rubisco shunt";"Carbon fixation in photosynthetic organisms";"Fructose and mannose metabolism";"Pentose phosphate pathway";"Pentose phosphate pathway";"RPIA deficiency: failed conversion of R5P to RU5P";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"RPIA deficiency: failed conversion of RU5P to R5P"
JAMg_model_17834.1	3	MetaCyc: PWY-6689;Reactome: R-HSA-6784531;MetaCyc: PWY-7803	"Trna splicing I";"tRNA processing in the nucleus";"Trna splicing II"
JAMg_model_21047.4	2	Reactome: R-HSA-72163;Reactome: R-HSA-6807505	"mRNA Splicing - Major Pathway";"RNA polymerase II transcribes snRNA genes"
JAMg_model_6067.1	3	Reactome: R-HSA-1445148;Reactome: R-HSA-264876;Reactome: R-HSA-5620916	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Insulin processing";"VxPx cargo-targeting to cilium"
JAMg_model_19469.1	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_1647.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_907.13	8	Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-196025;Reactome: R-HSA-190873;Reactome: R-HSA-432720;Reactome: R-HSA-3928665;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745	"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"Formation of annular gap junctions";"Gap junction degradation";"Lysosome Vesicle Biogenesis";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2"
JAMg_model_21354.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_2500.1	3	Reactome: R-HSA-2173791;Reactome: R-HSA-420029;Reactome: R-HSA-4608870	"TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)";"Tight junction interactions";"Asymmetric localization of PCP proteins"
JAMg_model_855.1	1	Reactome: R-HSA-6783310	"Fanconi Anemia Pathway"
JAMg_model_10191.2	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_14338.2	5	Reactome: R-HSA-2022857;Reactome: R-HSA-2206305;KEGG: 00531+3.1.6.14;Reactome: R-HSA-432720;Reactome: R-HSA-6798695	"Keratan sulfate degradation";"MPS IIID - Sanfilippo syndrome D";"Glycosaminoglycan degradation";"Lysosome Vesicle Biogenesis";"Neutrophil degranulation"
JAMg_model_7435.2	9	Reactome: R-HSA-6807505;Reactome: R-HSA-674695;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-76042;Reactome: R-HSA-75953;Reactome: R-HSA-73779	"RNA polymerase II transcribes snRNA genes";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening"
JAMg_model_12703.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_18910.4	1	Reactome: R-HSA-2142789	"Ubiquinol biosynthesis"
JAMg_model_13339.5	1	Reactome: R-HSA-388844	"Receptor-type tyrosine-protein phosphatases"
JAMg_model_7587.1	2	Reactome: R-HSA-2032785;Reactome: R-HSA-8951671	"YAP1- and WWTR1 (TAZ)-stimulated gene expression";"RUNX3 regulates YAP1-mediated transcription"
JAMg_model_8637.2	4	Reactome: R-HSA-4720454;KEGG: 00513+2.4.1.261;KEGG: 00510+2.4.1.259+2.4.1.261;Reactome: R-HSA-446193	"Defective ALG9 causes ALG9-CDG (CDG-1l)";"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein"
JAMg_model_14445.4	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_9200.1	3	Reactome: R-HSA-212436;Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Generic Transcription Pathway";"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_2885.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_9329.1	6	Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72689;Reactome: R-HSA-72649	"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of a pool of free 40S subunits";"Translation initiation complex formation"
JAMg_model_13313.2	3	Reactome: R-HSA-76061;Reactome: R-HSA-76066;Reactome: R-HSA-749476	"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_16306.1	5	KEGG: 00270+4.2.1.109;MetaCyc: PWY-4361;Reactome: R-HSA-9627069;Reactome: R-HSA-1237112;Reactome: R-HSA-111458	"Cysteine and methionine metabolism";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Regulation of the apoptosome activity";"Methionine salvage pathway";"Formation of apoptosome"
JAMg_model_12776.2	3	Reactome: R-HSA-6798695;Reactome: R-HSA-2024096;Reactome: R-HSA-2206291	"Neutrophil degranulation";"HS-GAG degradation";"MPS IIIC - Sanfilippo syndrome C"
JAMg_model_1523.9	2	Reactome: R-HSA-1268020;Reactome: R-HSA-8949613	"Mitochondrial protein import";"Cristae formation"
JAMg_model_17025.1	57	Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-6798695;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585	"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"Neutrophil degranulation";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G"
JAMg_model_639.4	24	Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-983189;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467	"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HCMV Early Events";"Mitotic Prometaphase";"Kinesins";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs"
JAMg_model_11706.1	17	Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-6790901;Reactome: R-HSA-975956;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"rRNA modification in the nucleus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_11278.1	3	Reactome: R-HSA-2142691;MetaCyc: PWY-7533;Reactome: R-HSA-5423646	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification"
JAMg_model_13394.2	7	Reactome: R-HSA-1483213;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7886;MetaCyc: PWY-7818;MetaCyc: PWY-7782;Reactome: R-HSA-1483191;MetaCyc: PWY-3385	"Synthesis of PE";"Glycerophospholipid metabolism";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)";"Plasmalogen biosynthesis";"Synthesis of PC";"Choline biosynthesis I"
JAMg_model_12579.2	2	Reactome: R-HSA-72163;Reactome: R-HSA-6807505	"mRNA Splicing - Major Pathway";"RNA polymerase II transcribes snRNA genes"
JAMg_model_10124.6	6	KEGG: 00630+4.2.1.3;Reactome: R-HSA-1268020;KEGG: 00720+4.2.1.3;KEGG: 00020+4.2.1.3;KEGG: 00290+4.2.1.33;Reactome: R-HSA-71403	"Glyoxylate and dicarboxylate metabolism";"Mitochondrial protein import";"Carbon fixation pathways in prokaryotes";"Citrate cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis";"Citric acid cycle (TCA cycle)"
JAMg_model_5876.3	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_17161.1	5	KEGG: 00520+2.7.1.6;MetaCyc: PWY-3821;MetaCyc: PWY-6527;KEGG: 00052+2.7.1.6;MetaCyc: PWY-6317	"Amino sugar and nucleotide sugar metabolism";"D-galactose detoxification";"Stachyose degradation";"Galactose metabolism";"D-galactose degradation I (Leloir pathway)"
JAMg_model_1040.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_20447.1	1	Reactome: R-HSA-3214858	"RMTs methylate histone arginines"
JAMg_model_1310.1	1	KEGG: 00970+6.1.1.3	"Aminoacyl-tRNA biosynthesis"
JAMg_model_21049.3	1	Reactome: R-HSA-110362	"POLB-Dependent Long Patch Base Excision Repair"
JAMg_model_13715.5	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_20782.1	57	Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-5610785;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-174113;Reactome: R-HSA-202424	"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"GLI3 is processed to GLI3R by the proteasome";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling"
JAMg_model_3715.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_2132.5	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_20214.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19224.3	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_18883.1	1	Reactome: R-HSA-8849932	"Synaptic adhesion-like molecules"
JAMg_model_11544.1	5	Reactome: R-HSA-8849471;Reactome: R-HSA-5658442;Reactome: R-HSA-5218921;Reactome: R-HSA-186763;Reactome: R-HSA-3928662	"PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases";"Regulation of RAS by GAPs";"VEGFR2 mediated cell proliferation";"Downstream signal transduction";"EPHB-mediated forward signaling"
JAMg_model_6805.2	1	Reactome: R-HSA-5635838	"Activation of SMO"
JAMg_model_5022.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_5687.1	1	Reactome: R-HSA-373752	"Netrin-1 signaling"
JAMg_model_16740.2	1	Reactome: R-HSA-427413	"NoRC negatively regulates rRNA expression"
JAMg_model_20780.2	57	Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-6798695;Reactome: R-HSA-5610785;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-180534	"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"Neutrophil degranulation";"GLI3 is processed to GLI3R by the proteasome";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4"
JAMg_model_13561.2	5	Reactome: R-HSA-190873;Reactome: R-HSA-8856825;Reactome: R-HSA-8856828;Reactome: R-HSA-3928665;Reactome: R-HSA-196025	"Gap junction degradation";"Cargo recognition for clathrin-mediated endocytosis";"Clathrin-mediated endocytosis";"EPH-ephrin mediated repulsion of cells";"Formation of annular gap junctions"
JAMg_model_12508.6	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_6601.4	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_5878.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_20577.2	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5262.3	2	KEGG: 00970+6.1.1.1;Reactome: R-HSA-379716	"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_1394.1	26	Reactome: R-HSA-8955332;Reactome: R-HSA-389977;Reactome: R-HSA-6811434;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-389960;Reactome: R-HSA-983189;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833	"Carboxyterminal post-translational modifications of tubulin";"Post-chaperonin tubulin folding pathway";"COPI-dependent Golgi-to-ER retrograde traffic";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Formation of tubulin folding intermediates by CCT/TriC";"Kinesins";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly"
JAMg_model_1398.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_17227.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_1641.1	2	Reactome: R-HSA-5620924;Reactome: R-HSA-5610787	"Intraflagellar transport";"Hedgehog 'off' state"
JAMg_model_7893.1	1	Reactome: R-HSA-5576886	"Phase 4 - resting membrane potential"
JAMg_model_5403.3	13	Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_14483.1	5	Reactome: R-HSA-8939243;Reactome: R-HSA-3247509;Reactome: R-HSA-201722;Reactome: R-HSA-3214858;Reactome: R-HSA-1266695	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Chromatin modifying enzymes";"Formation of the beta-catenin:TCF transactivating complex";"RMTs methylate histone arginines";"Interleukin-7 signaling"
JAMg_model_185.1	6	MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463	"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis"
JAMg_model_4998.1	1	Reactome: R-HSA-162658	"Golgi Cisternae Pericentriolar Stack Reorganization"
JAMg_model_148.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_258.2	5	Reactome: R-HSA-5610787;Reactome: R-HSA-5610785;Reactome: R-HSA-5632684;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780	"Hedgehog 'off' state";"GLI3 is processed to GLI3R by the proteasome";"Hedgehog 'on' state";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome"
JAMg_model_20300.2	8	Reactome: R-HSA-8854518;Reactome: R-HSA-5689880;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-5620912;Reactome: R-HSA-2565942;Reactome: R-HSA-380270;Reactome: R-HSA-380284	"AURKA Activation by TPX2";"Ub-specific processing proteases";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Anchoring of the basal body to the plasma membrane";"Regulation of PLK1 Activity at G2/M Transition";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome"
JAMg_model_15828.1	6	Reactome: R-HSA-2173796;Reactome: R-HSA-8957275;Reactome: R-HSA-381426;Reactome: R-HSA-3769402;Reactome: R-HSA-201722;Reactome: R-HSA-5626467	"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"Post-translational protein phosphorylation";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Deactivation of the beta-catenin transactivating complex";"Formation of the beta-catenin:TCF transactivating complex";"RHO GTPases activate IQGAPs"
JAMg_model_17161.6	5	MetaCyc: PWY-6317;MetaCyc: PWY-6527;KEGG: 00052+2.7.1.6;MetaCyc: PWY-3821;KEGG: 00520+2.7.1.6	"D-galactose degradation I (Leloir pathway)";"Stachyose degradation";"Galactose metabolism";"D-galactose detoxification";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_9515.3	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_20372.2	3	Reactome: R-HSA-6807505;Reactome: R-HSA-76071;Reactome: R-HSA-749476	"RNA polymerase II transcribes snRNA genes";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Abortive And Retractive Initiation"
JAMg_model_8698.4	22	Reactome: R-HSA-75876;MetaCyc: PWY-7619;MetaCyc: PWY-7728;MetaCyc: PWY-8041;MetaCyc: PWY-7592;MetaCyc: PWY-7725;MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-5353;MetaCyc: PWY-6958;MetaCyc: PWY-7606;MetaCyc: PWY-7726;MetaCyc: PWY-7035;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7727;MetaCyc: PWY-7049;MetaCyc: PWY-5080;MetaCyc: PWY-7602;MetaCyc: PWY-6433;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7053	"Synthesis of very long-chain fatty acyl-CoAs";"Juniperonate biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Ultra-long-chain fatty acid biosynthesis";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(9Z)-tricosene biosynthesis";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Fatty acid elongation";"Docosahexaenoate biosynthesis I (lower eukaryotes)"
JAMg_model_15126.4	13	Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Peptide chain elongation";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_12130.3	24	Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-983189;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434	"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Kinesins";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_7092.2	5	MetaCyc: PWY-4981;MetaCyc: PWY-6344;MetaCyc: PWY-3341;KEGG: 00330+1.5.1.2;Reactome: R-HSA-8964539	"L-proline biosynthesis II (from arginine)";"L-ornithine degradation II (Stickland reaction)";"L-proline biosynthesis III (from L-ornithine)";"Arginine and proline metabolism";"Glutamate and glutamine metabolism"
JAMg_model_15126.3	13	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_10817.2	2	Reactome: R-HSA-6790901;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_236.1	2	Reactome: R-HSA-382556;Reactome: R-HSA-5690338	"ABC-family proteins mediated transport";"Defective ABCC6 causes pseudoxanthoma elasticum (PXE)"
JAMg_model_11282.1	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_8759.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_9479.1	5	Reactome: R-HSA-5632684;Reactome: R-HSA-5635838;Reactome: R-HSA-5610787;Reactome: R-HSA-5620922;Reactome: R-HSA-373080	"Hedgehog 'on' state";"Activation of SMO";"Hedgehog 'off' state";"BBSome-mediated cargo-targeting to cilium";"Class B/2 (Secretin family receptors)"
JAMg_model_11907.4	1	Reactome: R-HSA-2151201	"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_2919.1	2	KEGG: 00514+2.4.1.221;Reactome: R-HSA-1912399	"Other types of O-glycan biosynthesis";"Pre-NOTCH Processing in the Endoplasmic Reticulum"
JAMg_model_10918.2	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_13323.2	3	Reactome: R-HSA-110357;Reactome: R-HSA-110331;Reactome: R-HSA-110330	"Displacement of DNA glycosylase by APEX1";"Cleavage of the damaged purine";"Recognition and association of DNA glycosylase with site containing an affected purine"
JAMg_model_9797.1	14	Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-156902;Reactome: R-HSA-191273;Reactome: R-HSA-192823;Reactome: R-HSA-156827;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339	"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Peptide chain elongation";"Cholesterol biosynthesis";"Viral mRNA Translation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_4574.1	2	Reactome: R-HSA-1799339;Reactome: R-HSA-446203	"SRP-dependent cotranslational protein targeting to membrane";"Asparagine N-linked glycosylation"
JAMg_model_16817.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4891.2	56	Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168	"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_11650.1	1	Reactome: R-HSA-71262	"Carnitine synthesis"
JAMg_model_12880.3	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_4046.1	2	Reactome: R-HSA-5357905;Reactome: R-HSA-8876198	"Regulation of TNFR1 signaling";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_11541.1	3	Reactome: R-HSA-5578775;Reactome: R-HSA-425561;Reactome: R-HSA-418359	"Ion homeostasis";"Sodium/Calcium exchangers";"Reduction of cytosolic Ca++ levels"
JAMg_model_19141.4	1	Reactome: R-HSA-6814848	"Glycerophospholipid catabolism"
JAMg_model_15506.1	1	KEGG: 00970+6.3.5.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_4248.2	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5389840;Reactome: R-HSA-5419276	"Mitochondrial translation initiation";"Mitochondrial translation elongation";"Mitochondrial translation termination"
JAMg_model_8159.1	12	MetaCyc: PWY-1861;MetaCyc: PWY-6142;Reactome: R-HSA-70171;KEGG: 00030+4.1.2.13;MetaCyc: PWY-7385;KEGG: 00051+4.1.2.13;KEGG: 00010+4.1.2.13;Reactome: R-HSA-70263;KEGG: 00710+4.1.2.13;KEGG: 00680+4.1.2.13;MetaCyc: PWY-1042;MetaCyc: PWY-5484	"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis";"Pentose phosphate pathway";"1,3-propanediol biosynthesis (engineered)";"Fructose and mannose metabolism";"Glycolysis / Gluconeogenesis";"Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Methane metabolism";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)"
JAMg_model_3237.1	13	Reactome: R-HSA-416993;Reactome: R-HSA-8866427;Reactome: R-HSA-2132295;Reactome: R-HSA-167590;Reactome: R-HSA-5099900;Reactome: R-HSA-5140745;Reactome: R-HSA-177504;Reactome: R-HSA-3928665;Reactome: R-HSA-8964038;Reactome: R-HSA-182218;Reactome: R-HSA-8856825;Reactome: R-HSA-437239;Reactome: R-HSA-8856828	"Trafficking of GluR2-containing AMPA receptors";"VLDLR internalisation and degradation";"MHC class II antigen presentation";"Nef Mediated CD4 Down-regulation";"WNT5A-dependent internalization of FZD4";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"Retrograde neurotrophin signalling";"EPH-ephrin mediated repulsion of cells";"LDL clearance";"Nef Mediated CD8 Down-regulation";"Cargo recognition for clathrin-mediated endocytosis";"Recycling pathway of L1";"Clathrin-mediated endocytosis"
JAMg_model_2755.1	4	Reactome: R-HSA-350054;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947	"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription"
JAMg_model_15097.6	8	Reactome: R-HSA-167590;Reactome: R-HSA-1222556;Reactome: R-HSA-9636467;Reactome: R-HSA-182218;Reactome: R-HSA-983712;Reactome: R-HSA-9639288;Reactome: R-HSA-77387;Reactome: R-HSA-917977	"Nef Mediated CD4 Down-regulation";"ROS and RNS production in phagocytes";"Blockage of phagosome acidification";"Nef Mediated CD8 Down-regulation";"Ion channel transport";"Amino acids regulate mTORC1";"Insulin receptor recycling";"Transferrin endocytosis and recycling"
JAMg_model_1039.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_14870.3	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_10745.2	5	Reactome: R-HSA-72163;Reactome: R-HSA-72187;Reactome: R-HSA-72165;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA Splicing - Major Pathway";"mRNA 3'-end processing";"mRNA Splicing - Minor Pathway";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_6292.3	1	KEGG: 00970+6.1.1.7	"Aminoacyl-tRNA biosynthesis"
JAMg_model_9719.2	2	KEGG: 00230+4.6.1.1;Reactome: R-HSA-196819	"Purine metabolism";"Vitamin B1 (thiamin) metabolism"
JAMg_model_17269.4	3	MetaCyc: PWY-8106;Reactome: R-HSA-6782315;MetaCyc: PWY-6700	"Queuosine biosynthesis III (queuosine salvage)";"tRNA modification in the nucleus and cytosol";"Queuosine biosynthesis I (de novo)"
JAMg_model_7189.2	3	Reactome: R-HSA-416482;Reactome: R-HSA-194840;Reactome: R-HSA-193648	"G alpha (12/13) signalling events";"Rho GTPase cycle";"NRAGE signals death through JNK"
JAMg_model_14260.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_5047.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_5870.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_7355.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_6466.2	26	Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-983189;Reactome: R-HSA-389960;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-389977;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332	"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Kinesins";"Formation of tubulin folding intermediates by CCT/TriC";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Post-chaperonin tubulin folding pathway";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_8268.1	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_18567.2	7	MetaCyc: PWY-7456;MetaCyc: PWY-5659;KEGG: 00051+5.4.2.8;MetaCyc: PWY-7586;MetaCyc: PWY-882;KEGG: 00520+5.4.2.8;Reactome: R-HSA-446205	"Beta-(1,4)-mannan degradation";"GDP-mannose biosynthesis";"Fructose and mannose metabolism";"Beta-1,4-d-mannosyl-n-acetyl-d-glucosamine degradation";"L-ascorbate biosynthesis I (L-galactose pathway)";"Amino sugar and nucleotide sugar metabolism";"Synthesis of GDP-mannose"
JAMg_model_6050.1	3	KEGG: 00480+4.3.2.7;Reactome: R-HSA-174403;MetaCyc: PWY-7942	"Glutathione metabolism";"Glutathione synthesis and recycling";"5-oxo-L-proline metabolism"
JAMg_model_1520.1	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_16399.3	4	Reactome: R-HSA-975956;Reactome: R-HSA-9010553;Reactome: R-HSA-975957;Reactome: R-HSA-72764	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Eukaryotic Translation Termination"
JAMg_model_12942.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_18918.6	3	Reactome: R-HSA-70268;MetaCyc: PWY-5386;KEGG: 00620+4.4.1.5	"Pyruvate metabolism";"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_10745.1	5	Reactome: R-HSA-72165;Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA Splicing - Minor Pathway";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_2059.2	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_13649.3	3	Reactome: R-HSA-212436;Reactome: R-HSA-1989781;Reactome: R-HSA-381340	"Generic Transcription Pathway";"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation"
JAMg_model_10892.2	3	KEGG: 00790+3.1.3.1;MetaCyc: PWY-5491;KEGG: 00730+3.1.3.1	"Folate biosynthesis";"Diethylphosphate degradation";"Thiamine metabolism"
JAMg_model_859.3	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_1294.2	56	Reactome: R-HSA-4641257;Reactome: R-HSA-174084;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4641258;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-180534;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664	"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Degradation of DVL";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"UCH proteinases";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Vpu mediated degradation of CD4";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"ABC-family proteins mediated transport";"G2/M Checkpoints";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation"
JAMg_model_8298.12	4	Reactome: R-HSA-1912420;Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359	"Pre-NOTCH Processing in Golgi";"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels"
JAMg_model_21162.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_8115.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_18377.1	5	Reactome: R-HSA-5617472;Reactome: R-HSA-8936459;Reactome: R-HSA-201722;Reactome: R-HSA-3214841;Reactome: R-HSA-3769402	"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Formation of the beta-catenin:TCF transactivating complex";"PKMTs methylate histone lysines";"Deactivation of the beta-catenin transactivating complex"
JAMg_model_15513.1	2	Reactome: R-HSA-379726;KEGG: 00970+6.1.1.4	"Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis"
JAMg_model_3589.1	5	Reactome: R-HSA-6807878;Reactome: R-HSA-3371497;Reactome: R-HSA-6798695;Reactome: R-HSA-2132295;Reactome: R-HSA-6811436	"COPI-mediated anterograde transport";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Neutrophil degranulation";"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_19874.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_2157.4	1	Reactome: R-HSA-189451	"Heme biosynthesis"
JAMg_model_16392.1	6	Reactome: R-HSA-5617472;Reactome: R-HSA-8936459;Reactome: R-HSA-3769402;Reactome: R-HSA-3214841;Reactome: R-HSA-8951664;Reactome: R-HSA-201722	"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Deactivation of the beta-catenin transactivating complex";"PKMTs methylate histone lysines";"Neddylation";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_20788.2	9	Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-674695;Reactome: R-HSA-6804756;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-75953	"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"RNA Polymerase II Pre-transcription Events";"Regulation of TP53 Activity through Phosphorylation";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation"
JAMg_model_21344.1	1	Reactome: R-HSA-162791	"Attachment of GPI anchor to uPAR"
JAMg_model_17278.1	11	Reactome: R-HSA-1660516;MetaCyc: PWY-6352;KEGG: 04070+2.7.1.137;Reactome: R-HSA-1660499;Reactome: R-HSA-5668599;Reactome: R-HSA-1660517;Reactome: R-HSA-1660514;KEGG: 00562+2.7.1.137;Reactome: R-HSA-1632852;Reactome: R-HSA-109704;Reactome: R-HSA-168138	"Synthesis of PIPs at the early endosome membrane";"3-phosphoinositide biosynthesis";"Phosphatidylinositol signaling system";"Synthesis of PIPs at the plasma membrane";"RHO GTPases Activate NADPH Oxidases";"Synthesis of PIPs at the late endosome membrane";"Synthesis of PIPs at the Golgi membrane";"Inositol phosphate metabolism";"Macroautophagy";"PI3K Cascade";"Toll Like Receptor 9 (TLR9) Cascade"
JAMg_model_15276.1	57	Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5610785;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-4641258;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-187577;Reactome: R-HSA-532668;Reactome: R-HSA-174154;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902	"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"GLI3 is processed to GLI3R by the proteasome";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Degradation of DVL";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"SCF(Skp2)-mediated degradation of p27/p21";"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"APC/C:Cdc20 mediated degradation of Securin";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity"
JAMg_model_10017.1	1	Reactome: R-HSA-8874211	"CREB3 factors activate genes"
JAMg_model_20984.3	4	Reactome: R-HSA-419037;Reactome: R-HSA-5576893;Reactome: R-HSA-5576892;Reactome: R-HSA-112308	"NCAM1 interactions";"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation";"Presynaptic depolarization and calcium channel opening"
JAMg_model_19134.1	1	Reactome: R-HSA-6807878	"COPI-mediated anterograde transport"
JAMg_model_4381.3	5	Reactome: R-HSA-6782135;Reactome: R-HSA-6783310;Reactome: R-HSA-5696400;Reactome: R-HSA-5685938;Reactome: R-HSA-5696395	"Dual incision in TC-NER";"Fanconi Anemia Pathway";"Dual Incision in GG-NER";"HDR through Single Strand Annealing (SSA)";"Formation of Incision Complex in GG-NER"
JAMg_model_750.3	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_1835.1	1	Reactome: R-HSA-3295583	"TRP channels"
JAMg_model_18047.3	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_7281.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_11737.6	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_6807.7	5	KEGG: 00020+4.2.1.3;KEGG: 00290+4.2.1.33;KEGG: 00630+4.2.1.3;KEGG: 00720+4.2.1.3;Reactome: R-HSA-917937	"Citrate cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis";"Glyoxylate and dicarboxylate metabolism";"Carbon fixation pathways in prokaryotes";"Iron uptake and transport"
JAMg_model_17161.3	5	MetaCyc: PWY-3821;KEGG: 00520+2.7.1.6;KEGG: 00052+2.7.1.6;MetaCyc: PWY-6527;MetaCyc: PWY-6317	"D-galactose detoxification";"Amino sugar and nucleotide sugar metabolism";"Galactose metabolism";"Stachyose degradation";"D-galactose degradation I (Leloir pathway)"
JAMg_model_3549.1	3	Reactome: R-HSA-5663213;Reactome: R-HSA-4420097;Reactome: R-HSA-2029482	"RHO GTPases Activate WASPs and WAVEs";"VEGFA-VEGFR2 Pathway";"Regulation of actin dynamics for phagocytic cup formation"
JAMg_model_16028.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_13153.1	12	Reactome: R-HSA-9017802;Reactome: R-HSA-205043;Reactome: R-HSA-1251985;Reactome: R-HSA-977225;Reactome: R-HSA-193692;Reactome: R-HSA-2894862;Reactome: R-HSA-2979096;Reactome: R-HSA-3928665;Reactome: R-HSA-9013507;Reactome: R-HSA-2122948;Reactome: R-HSA-9013700;Reactome: R-HSA-2644606	"Noncanonical activation of NOTCH3";"NRIF signals cell death from the nucleus";"Nuclear signaling by ERBB4";"Amyloid fiber formation";"Regulated proteolysis of p75NTR";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"EPH-ephrin mediated repulsion of cells";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus";"NOTCH4 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 PEST Domain Mutants"
JAMg_model_13397.2	7	KEGG: 00564+2.7.1.32+2.7.1.82;Reactome: R-HSA-1483213;MetaCyc: PWY-7818;MetaCyc: PWY-7886;Reactome: R-HSA-1483191;MetaCyc: PWY-7782;MetaCyc: PWY-3385	"Glycerophospholipid metabolism";"Synthesis of PE";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis";"Synthesis of PC";"Plasmalogen biosynthesis";"Choline biosynthesis I"
JAMg_model_1489.3	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_5973.1	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_12850.1	2	Reactome: R-HSA-877300;Reactome: R-HSA-2132295	"Interferon gamma signaling";"MHC class II antigen presentation"
JAMg_model_13589.1	3	MetaCyc: PWY-7833;Reactome: R-HSA-9033807;MetaCyc: PWY-7831	"Biosynthesis of Lewis epitopes (H. pylori)";"ABO blood group biosynthesis";"ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide"
JAMg_model_3222.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_20789.1	57	Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-5610783;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-5687128;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-8941858;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-1236978;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-180534;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-6798695;Reactome: R-HSA-8854050;Reactome: R-HSA-5610785;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-4641257;Reactome: R-HSA-174084	"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Degradation of GLI2 by the proteasome";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"MAPK6/MAPK4 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of RUNX3 expression and activity";"Interleukin-1 signaling";"Orc1 removal from chromatin";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Cross-presentation of soluble exogenous antigens (endosomes)";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Vpu mediated degradation of CD4";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"FCERI mediated NF-kB activation";"UCH proteinases";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"Neutrophil degranulation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"GLI3 is processed to GLI3R by the proteasome";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C"
JAMg_model_11645.2	5	Reactome: R-HSA-1222556;Reactome: R-HSA-9639288;Reactome: R-HSA-983712;Reactome: R-HSA-77387;Reactome: R-HSA-917977	"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1";"Ion channel transport";"Insulin receptor recycling";"Transferrin endocytosis and recycling"
JAMg_model_4165.3	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_17873.1	1	Reactome: R-HSA-72165	"mRNA Splicing - Minor Pathway"
JAMg_model_1138.1	10	MetaCyc: PWY-4061;KEGG: 00460+2.3.2.2;MetaCyc: PWY-7112;MetaCyc: PWY-4041;MetaCyc: PWY-7559;MetaCyc: PWY-6842;MetaCyc: PWY-8001;KEGG: 00480+2.3.2.2+3.4.19.13;MetaCyc: PWY-5826;KEGG: 00430+2.3.2.2	"Glutathione-mediated detoxification I";"Cyanoamino acid metabolism";"4-hydroxy-2-nonenal detoxification";"Gamma-glutamyl cycle";"Glutathione degradation (DUG pathway";"Glutathione-mediated detoxification II";"Felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis";"Glutathione metabolism";"Hypoglycin biosynthesis";"Taurine and hypotaurine metabolism"
JAMg_model_15597.2	40	Reactome: R-HSA-167238;Reactome: R-HSA-6781823;Reactome: R-HSA-72086;Reactome: R-HSA-77075;Reactome: R-HSA-167246;Reactome: R-HSA-72165;Reactome: R-HSA-8851708;Reactome: R-HSA-5617472;Reactome: R-HSA-167172;Reactome: R-HSA-167243;Reactome: R-HSA-167290;Reactome: R-HSA-203927;Reactome: R-HSA-112382;Reactome: R-HSA-167287;Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-6807505;Reactome: R-HSA-168325;Reactome: R-HSA-6781827;Reactome: R-HSA-5578749;Reactome: R-HSA-72163;Reactome: R-HSA-167160;Reactome: R-HSA-76042;Reactome: R-HSA-6803529;Reactome: R-HSA-5601884;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72203;Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-9018519;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-6796648;Reactome: R-HSA-167200;Reactome: R-HSA-75953;Reactome: R-HSA-167242;Reactome: R-HSA-73776;Reactome: R-HSA-6782135	"Pausing and recovery of Tat-mediated HIV elongation";"Formation of TC-NER Pre-Incision Complex";"mRNA Capping";"RNA Pol II CTD phosphorylation and interaction with CE";"Tat-mediated elongation of the HIV-1 transcript";"mRNA Splicing - Minor Pathway";"Signaling by FGFR2 IIIa TM";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcription of the HIV genome";"Tat-mediated HIV elongation arrest and recovery";"Pausing and recovery of HIV elongation";"MicroRNA (miRNA) biogenesis";"Formation of RNA Pol II elongation complex";"HIV elongation arrest and recovery";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA polymerase II transcribes snRNA genes";"Viral Messenger RNA Synthesis";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Transcriptional regulation by small RNAs";"mRNA Splicing - Major Pathway";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"FGFR2 alternative splicing";"PIWI-interacting RNA (piRNA) biogenesis";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"Processing of Capped Intron-Containing Pre-mRNA";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"Estrogen-dependent gene expression";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"RNA Polymerase II Transcription Initiation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Promoter Escape";"Dual incision in TC-NER"
JAMg_model_20334.11	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_19296.1	3	Reactome: R-HSA-191859;Reactome: R-HSA-6804760;Reactome: R-HSA-3214858	"snRNP Assembly";"Regulation of TP53 Activity through Methylation";"RMTs methylate histone arginines"
JAMg_model_19798.1	4	MetaCyc: PWY-5188;KEGG: 00860+2.5.1.61;MetaCyc: PWY-5189;Reactome: R-HSA-189451	"Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism";"Tetrapyrrole biosynthesis II (from glycine)";"Heme biosynthesis"
JAMg_model_15612.1	1	Reactome: R-HSA-433137	"Sodium-coupled sulphate, di- and tri-carboxylate transporters"
JAMg_model_6121.1	12	Reactome: R-HSA-5628897;KEGG: 05163+2.7.11.1;Reactome: R-HSA-9619483;KEGG: 05170+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;Reactome: R-HSA-1632852;Reactome: R-HSA-6804756;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-380972;KEGG: 04926+2.7.11.1	"TP53 Regulates Metabolic Genes";"Human cytomegalovirus infection";"Activation of AMPK downstream of NMDARs";"Human immunodeficiency virus 1 infection";"PI3K-Akt signaling pathway";"mTOR signaling pathway";"Macroautophagy";"Regulation of TP53 Activity through Phosphorylation";"Human papillomavirus infection";"Thermogenesis";"Energy dependent regulation of mTOR by LKB1-AMPK";"Relaxin signaling pathway"
JAMg_model_12847.1	14	MetaCyc: PWY-7035;MetaCyc: PWY-5972;Reactome: R-HSA-75876;MetaCyc: PWY-8041;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-7619;MetaCyc: PWY-7725;MetaCyc: PWY-6433;MetaCyc: PWY-7602;MetaCyc: PWY-5080;MetaCyc: PWY-7724;MetaCyc: PWY-7601	"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Fatty acid elongation";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Juniperonate biosynthesis";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)"
JAMg_model_20275.1	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_4397.3	7	Reactome: R-HSA-5628897;Reactome: R-HSA-165159;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-166208;Reactome: R-HSA-9639288;Reactome: R-HSA-380972	"TP53 Regulates Metabolic Genes";"mTOR signalling";"Macroautophagy";"Regulation of PTEN gene transcription";"mTORC1-mediated signalling";"Amino acids regulate mTORC1";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_5030.2	2	Reactome: R-HSA-1660662;Reactome: R-HSA-390471	"Glycosphingolipid metabolism";"Association of TriC/CCT with target proteins during biosynthesis"
JAMg_model_10489.2	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_9771.1	2	Reactome: R-HSA-9033241;Reactome: R-HSA-389661	"Peroxisomal protein import";"Glyoxylate metabolism and glycine degradation"
JAMg_model_13545.4	1	Reactome: R-HSA-381753	"Olfactory Signaling Pathway"
JAMg_model_12051.1	1	Reactome: R-HSA-5668599	"RHO GTPases Activate NADPH Oxidases"
JAMg_model_11442.1	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_8094.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_17166.2	5	KEGG: 00020+4.2.1.3;KEGG: 00290+4.2.1.33;KEGG: 00630+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00720+4.2.1.3	"Citrate cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis";"Glyoxylate and dicarboxylate metabolism";"Iron uptake and transport";"Carbon fixation pathways in prokaryotes"
JAMg_model_602.3	13	Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Viral mRNA Translation";"Peptide chain elongation";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_579.2	1	Reactome: R-HSA-5662702	"Melanin biosynthesis"
JAMg_model_12573.5	18	KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-1622;KEGG: 00710+1.1.1.37;MetaCyc: PWY-5690;Reactome: R-HSA-70263;MetaCyc: PWY-7383;MetaCyc: PWY-561;KEGG: 00020+1.1.1.37;MetaCyc: PWY-5392;MetaCyc: PWY-8086;KEGG: 00630+1.1.1.37;MetaCyc: PWY-7115;KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-6728	"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Formaldehyde assimilation I (serine pathway)";"Carbon fixation in photosynthetic organisms";"TCA cycle II (plants and fungi)";"Gluconeogenesis";"Anaerobic energy metabolism (invertebrates, cytosol)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Citrate cycle (TCA cycle)";"Reductive TCA cycle II";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Glyoxylate and dicarboxylate metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Pyruvate metabolism";"Methane metabolism";"Methylaspartate cycle"
JAMg_model_4794.1	3	Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-4420097	"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"VEGFA-VEGFR2 Pathway"
JAMg_model_8376.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_1851.1	1	Reactome: R-HSA-427601	"Multifunctional anion exchangers"
JAMg_model_9899.2	13	Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339	"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_15864.1	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_1676.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_2017.2	5	Reactome: R-HSA-197264;Reactome: R-HSA-1368108;MetaCyc: PWY-5381;Reactome: R-HSA-6798695;KEGG: 00760+6.3.4.21	"Nicotinamide salvaging";"BMAL1:CLOCK,NPAS2 activates circadian gene expression";"Pyridine nucleotide cycling (plants)";"Neutrophil degranulation";"Nicotinate and nicotinamide metabolism"
JAMg_model_985.1	3	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15;Reactome: R-HSA-5628897	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism";"TP53 Regulates Metabolic Genes"
JAMg_model_15658.1	1	MetaCyc: PWY-6938	"NADH repair"
JAMg_model_11352.1	2	KEGG: 00260+2.1.2.10;KEGG: 00670+2.1.2.10	"Glycine, serine and threonine metabolism";"One carbon pool by folate"
JAMg_model_9194.3	6	KEGG: 00670+2.1.2.3;Reactome: R-HSA-73817;KEGG: 00230+3.5.4.10+2.1.2.3;MetaCyc: PWY-7234;MetaCyc: PWY-6123;MetaCyc: PWY-6124	"One carbon pool by folate";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Inosine-5'-phosphate biosynthesis III";"Inosine-5'-phosphate biosynthesis I";"Inosine-5'-phosphate biosynthesis II"
JAMg_model_17278.2	11	Reactome: R-HSA-1660517;Reactome: R-HSA-1632852;KEGG: 00562+2.7.1.137;Reactome: R-HSA-1660514;Reactome: R-HSA-109704;Reactome: R-HSA-168138;Reactome: R-HSA-1660516;MetaCyc: PWY-6352;Reactome: R-HSA-1660499;KEGG: 04070+2.7.1.137;Reactome: R-HSA-5668599	"Synthesis of PIPs at the late endosome membrane";"Macroautophagy";"Inositol phosphate metabolism";"Synthesis of PIPs at the Golgi membrane";"PI3K Cascade";"Toll Like Receptor 9 (TLR9) Cascade";"Synthesis of PIPs at the early endosome membrane";"3-phosphoinositide biosynthesis";"Synthesis of PIPs at the plasma membrane";"Phosphatidylinositol signaling system";"RHO GTPases Activate NADPH Oxidases"
JAMg_model_2428.1	24	Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-983189	"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Kinesins"
JAMg_model_3496.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_3205.1	24	Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257	"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Kinesins";"HCMV Early Events";"Mitotic Prometaphase";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion"
JAMg_model_19463.1	1	Reactome: R-HSA-2132295	"MHC class II antigen presentation"
JAMg_model_13658.1	3	KEGG: 00130+1.17.4.4;MetaCyc: PWY-7999;Reactome: R-HSA-6806664	"Ubiquinone and other terpenoid-quinone biosynthesis";"Vitamin K-epoxide cycle";"Metabolism of vitamin K"
JAMg_model_480.3	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_14359.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_3743.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_997.3	2	MetaCyc: PWY-6829;Reactome: R-HSA-6782315	"Trna methylation (yeast)";"tRNA modification in the nucleus and cytosol"
JAMg_model_15074.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6807878	"COPI-dependent Golgi-to-ER retrograde traffic";"COPI-mediated anterograde transport"
JAMg_model_907.1	8	Reactome: R-HSA-8856825;Reactome: R-HSA-196025;Reactome: R-HSA-8856828;Reactome: R-HSA-432720;Reactome: R-HSA-190873;Reactome: R-HSA-3928665;Reactome: R-HSA-5140745;Reactome: R-HSA-5099900	"Cargo recognition for clathrin-mediated endocytosis";"Formation of annular gap junctions";"Clathrin-mediated endocytosis";"Lysosome Vesicle Biogenesis";"Gap junction degradation";"EPH-ephrin mediated repulsion of cells";"WNT5A-dependent internalization of FZD2, FZD5 and ROR2";"WNT5A-dependent internalization of FZD4"
JAMg_model_4090.1	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_13276.1	5	KEGG: 00640+1.2.4.4;MetaCyc: PWY-5046;KEGG: 00280+1.2.4.4;Reactome: R-HSA-70895;Reactome: R-HSA-389661	"Propanoate metabolism";"2-oxoisovalerate decarboxylation to isobutanoyl-CoA";"Valine, leucine and isoleucine degradation";"Branched-chain amino acid catabolism";"Glyoxylate metabolism and glycine degradation"
JAMg_model_15267.1	1	Reactome: R-HSA-3214842	"HDMs demethylate histones"
JAMg_model_21086.1	1	Reactome: R-HSA-390522	"Striated Muscle Contraction"
JAMg_model_18210.2	5	MetaCyc: PWY-7560;MetaCyc: PWY-6891;KEGG: 00900+2.2.1.7;MetaCyc: PWY-6892;KEGG: 00730+2.2.1.7	"Methylerythritol phosphate pathway II";"Thiazole biosynthesis II (aerobic bacteria)";"Terpenoid backbone biosynthesis";"Thiazole biosynthesis I (facultative anaerobic bacteria)";"Thiamine metabolism"
JAMg_model_18710.1	3	Reactome: R-HSA-379716;KEGG: 00970+6.1.1.14;Reactome: R-HSA-379726	"Cytosolic tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation"
JAMg_model_4446.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-5628897	"Respiratory electron transport";"TP53 Regulates Metabolic Genes"
JAMg_model_15390.1	33	Reactome: R-HSA-159236;Reactome: R-HSA-5663220;Reactome: R-HSA-4085377;Reactome: R-HSA-141444;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-170822;Reactome: R-HSA-68877;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-3232142;Reactome: R-HSA-5578749;Reactome: R-HSA-165054;Reactome: R-HSA-191859;Reactome: R-HSA-4570464;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-4551638;Reactome: R-HSA-159227;Reactome: R-HSA-3301854;Reactome: R-HSA-159231;Reactome: R-HSA-168276;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-168333;Reactome: R-HSA-1169408;Reactome: R-HSA-9648025;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813	"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RHO GTPases Activate Formins";"SUMOylation of SUMOylation proteins";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"Mitotic Prometaphase";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"SUMOylation of ubiquitinylation proteins";"Transcriptional regulation by small RNAs";"Rev-mediated nuclear export of HIV RNA";"snRNP Assembly";"SUMOylation of RNA binding proteins";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of chromatin organization proteins";"Transport of the SLBP independent Mature mRNA";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript";"NS1 Mediated Effects on Host Pathways";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"NEP/NS2 Interacts with the Cellular Export Machinery";"ISG15 antiviral mechanism";"EML4 and NUDC in mitotic spindle formation";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids"
JAMg_model_21290.1	2	MetaCyc: PWY-6281;KEGG: 00970+6.1.1.11	"L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Aminoacyl-tRNA biosynthesis"
JAMg_model_20215.1	3	Reactome: R-HSA-2024101;Reactome: R-HSA-2024096;Reactome: R-HSA-2206302	"CS/DS degradation";"HS-GAG degradation";"MPS I - Hurler syndrome"
JAMg_model_7995.2	2	Reactome: R-HSA-418457;Reactome: R-HSA-1296052	"cGMP effects";"Ca2+ activated K+ channels"
JAMg_model_12130.1	24	Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-983189;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467	"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Kinesins";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs"
JAMg_model_21274.1	4	Reactome: R-HSA-6802952;Reactome: R-HSA-6798695;Reactome: R-HSA-983168;Reactome: R-HSA-1632852	"Signaling by BRAF and RAF fusions";"Neutrophil degranulation";"Antigen processing: Ubiquitination & Proteasome degradation";"Macroautophagy"
JAMg_model_10797.6	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_19162.8	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_13389.1	7	KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1	"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection"
JAMg_model_20334.8	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_11954.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-163210	"Cristae formation";"Formation of ATP by chemiosmotic coupling"
JAMg_model_990.2	14	Reactome: R-HSA-196757;KEGG: 00460+2.1.2.1;MetaCyc: PWY-3841;KEGG: 00630+2.1.2.1;KEGG: 00680+2.1.2.1;KEGG: 00670+2.1.2.1;MetaCyc: PWY-1622;MetaCyc: PWY-5497;MetaCyc: PWY-2201;KEGG: 00260+2.1.2.1;MetaCyc: PWY-2161;MetaCyc: PWY-3661;MetaCyc: PWY-181;MetaCyc: PWY-3661-1	"Metabolism of folate and pterines";"Cyanoamino acid metabolism";"Folate transformations II (plants)";"Glyoxylate and dicarboxylate metabolism";"Methane metabolism";"One carbon pool by folate";"Formaldehyde assimilation I (serine pathway)";"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"Glycine, serine and threonine metabolism";"Folate polyglutamylation";"Glycine betaine degradation I";"Photorespiration ";"Glycine betaine degradation II (mammalian)"
JAMg_model_12635.2	3	Reactome: R-HSA-73843;KEGG: 00230+2.7.6.1;KEGG: 00030+2.7.6.1	"5-Phosphoribose 1-diphosphate biosynthesis";"Purine metabolism";"Pentose phosphate pathway"
JAMg_model_16074.1	10	KEGG: 00564+2.3.1.15;Reactome: R-HSA-1483166;MetaCyc: PWY-7411;MetaCyc: PWY-8055;MetaCyc: PWY-6453;KEGG: 00561+2.3.1.15;MetaCyc: PWY-8053;MetaCyc: PWY-5667;MetaCyc: PWY-8051;MetaCyc: PWY-7587	"Glycerophospholipid metabolism";"Synthesis of PA";"Phosphatidate biosynthesis (yeast)";"Palmitoyl ethanolamide biosynthesis";"Stigma estolide biosynthesis";"Glycerolipid metabolism";"Anandamide biosynthesis II";"CDP-diacylglycerol biosynthesis I";"Anandamide biosynthesis I";"Oleate biosynthesis III (cyanobacteria)"
JAMg_model_8875.5	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_3854.1	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_5588.4	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_8096.3	5	Reactome: R-HSA-168315;Reactome: R-HSA-73856;Reactome: R-HSA-72187;Reactome: R-HSA-72163;Reactome: R-HSA-77595	"Inhibition of Host mRNA Processing and RNA Silencing";"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway";"Processing of Intronless Pre-mRNAs"
JAMg_model_3428.1	4	Reactome: R-HSA-975871;Reactome: R-HSA-6799198;Reactome: R-HSA-975138;Reactome: R-HSA-166058	"MyD88 cascade initiated on plasma membrane";"Complex I biogenesis";"TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation";"MyD88:MAL(TIRAP) cascade initiated on plasma membrane"
JAMg_model_20291.1	2	Reactome: R-HSA-3299685;KEGG: 00480+1.11.1.15	"Detoxification of Reactive Oxygen Species";"Glutathione metabolism"
JAMg_model_3113.1	4	Reactome: R-HSA-4551295;Reactome: R-HSA-446193;KEGG: 00513+2.4.1.131;KEGG: 00510+2.4.1.131	"Defective ALG11 causes ALG11-CDG (CDG-1p)";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis"
JAMg_model_19134.2	1	Reactome: R-HSA-6807878	"COPI-mediated anterograde transport"
JAMg_model_12391.3	7	MetaCyc: PWY-7625;MetaCyc: PWY-6351;KEGG: 00562+2.7.8.11;KEGG: 04070+2.7.8.11;KEGG: 00564+2.7.8.11;MetaCyc: PWY-6352;Reactome: R-HSA-1483226	"Phosphatidylinositol biosynthesis II (eukaryotes)";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Inositol phosphate metabolism";"Phosphatidylinositol signaling system";"Glycerophospholipid metabolism";"3-phosphoinositide biosynthesis";"Synthesis of PI"
JAMg_model_53.1	7	KEGG: 04070+3.1.4.11;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6367;Reactome: R-HSA-1855204;MetaCyc: PWY-6351;MetaCyc: PWY-8052;MetaCyc: PWY-7039	"Phosphatidylinositol signaling system";"Inositol phosphate metabolism";"D-myo-inositol-5-phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"Phosphatidate metabolism, as a signaling molecule"
JAMg_model_7553.1	6	Reactome: R-HSA-390247;Reactome: R-HSA-9033500;Reactome: R-HSA-9033241;Reactome: R-HSA-193368;Reactome: R-HSA-389887;Reactome: R-HSA-2046106	"Beta-oxidation of very long chain fatty acids";"TYSND1 cleaves peroxisomal proteins";"Peroxisomal protein import";"Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol";"Beta-oxidation of pristanoyl-CoA";"alpha-linolenic acid (ALA) metabolism"
JAMg_model_11645.1	5	Reactome: R-HSA-983712;Reactome: R-HSA-917977;Reactome: R-HSA-77387;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288	"Ion channel transport";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1"
JAMg_model_6333.3	10	MetaCyc: PWY-5892;MetaCyc: PWY-5844;MetaCyc: PWY-5895;MetaCyc: PWY-5891;KEGG: 00130+2.1.1.163;Reactome: R-HSA-2142789;MetaCyc: PWY-7996;MetaCyc: PWY-5839;MetaCyc: PWY-5849;MetaCyc: PWY-5890	"Menaquinol-12 biosynthesis";"Menaquinol-9 biosynthesis";"Menaquinol-13 biosynthesis";"Menaquinol-11 biosynthesis";"Ubiquinone and other terpenoid-quinone biosynthesis";"Ubiquinol biosynthesis";"Menaquinol-4 biosynthesis I";"Menaquinol-7 biosynthesis";"Menaquinol-6 biosynthesis";"Menaquinol-10 biosynthesis"
JAMg_model_20019.1	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394	"UCH proteinases";"DNA Damage Recognition in GG-NER"
JAMg_model_1524.2	5	Reactome: R-HSA-350054;Reactome: R-HSA-5083630;Reactome: R-HSA-1912408;Reactome: R-HSA-1912420;Reactome: R-HSA-1912399	"Notch-HLH transcription pathway";"Defective LFNG causes SCDO3";"Pre-NOTCH Transcription and Translation";"Pre-NOTCH Processing in Golgi";"Pre-NOTCH Processing in the Endoplasmic Reticulum"
JAMg_model_12635.3	3	Reactome: R-HSA-73843;KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1	"5-Phosphoribose 1-diphosphate biosynthesis";"Pentose phosphate pathway";"Purine metabolism"
JAMg_model_11821.1	20	Reactome: R-HSA-5696397;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-5656169;Reactome: R-HSA-110320;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5685938;Reactome: R-HSA-5696400;Reactome: R-HSA-110312;Reactome: R-HSA-5655862;Reactome: R-HSA-6782135;Reactome: R-HSA-69091;Reactome: R-HSA-110314;Reactome: R-HSA-6804756;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-174411	"Gap-filling DNA repair synthesis and ligation in GG-NER";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"Termination of translesion DNA synthesis";"Translesion Synthesis by POLH";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"HDR through Single Strand Annealing (SSA)";"Dual Incision in GG-NER";"Translesion synthesis by REV1";"Translesion synthesis by POLK";"Dual incision in TC-NER";"Polymerase switching";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"Polymerase switching on the C-strand of the telomere"
JAMg_model_11657.2	2	Reactome: R-HSA-168276;Reactome: R-HSA-1169408	"NS1 Mediated Effects on Host Pathways";"ISG15 antiviral mechanism"
JAMg_model_7790.1	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_17677.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_11395.1	2	Reactome: R-HSA-8964539;Reactome: R-HSA-2151201	"Glutamate and glutamine metabolism";"Transcriptional activation of mitochondrial biogenesis"
JAMg_model_12343.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_15135.2	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_16324.1	3	Reactome: R-HSA-2142691;MetaCyc: PWY-7533;Reactome: R-HSA-5423646	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification"
JAMg_model_10492.1	5	Reactome: R-HSA-110329;Reactome: R-HSA-110357;Reactome: R-HSA-110328;Reactome: R-HSA-9630222;Reactome: R-HSA-9630221	"Cleavage of the damaged pyrimidine";"Displacement of DNA glycosylase by APEX1";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Defective NTHL1 substrate binding";"Defective NTHL1 substrate processing"
JAMg_model_8643.1	2	Reactome: R-HSA-381340;Reactome: R-HSA-1989781	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression"
JAMg_model_14039.1	9	MetaCyc: PWY-6351;MetaCyc: PWY-8052;Reactome: R-HSA-416476;MetaCyc: PWY-7039;Reactome: R-HSA-1855204;MetaCyc: PWY-6367;KEGG: 00562+3.1.4.11;Reactome: R-HSA-112043;KEGG: 04070+3.1.4.11	"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"G alpha (q) signalling events";"Phosphatidate metabolism, as a signaling molecule";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism";"Inositol phosphate metabolism";"PLC beta mediated events";"Phosphatidylinositol signaling system"
JAMg_model_1102.3	2	Reactome: R-HSA-2514859;KEGG: 00900+2.5.1.58	"Inactivation, recovery and regulation of the phototransduction cascade";"Terpenoid backbone biosynthesis"
JAMg_model_3202.1	1	Reactome: R-HSA-2022377	"Metabolism of Angiotensinogen to Angiotensins"
JAMg_model_18534.1	5	Reactome: R-HSA-3247509;Reactome: R-HSA-8939243;Reactome: R-HSA-201722;Reactome: R-HSA-1266695;Reactome: R-HSA-3214858	"Chromatin modifying enzymes";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Formation of the beta-catenin:TCF transactivating complex";"Interleukin-7 signaling";"RMTs methylate histone arginines"
JAMg_model_11657.1	2	Reactome: R-HSA-1169408;Reactome: R-HSA-168276	"ISG15 antiviral mechanism";"NS1 Mediated Effects on Host Pathways"
JAMg_model_15609.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_7111.1	4	Reactome: R-HSA-8856828;Reactome: R-HSA-5250958;Reactome: R-HSA-6794361;Reactome: R-HSA-8856825	"Clathrin-mediated endocytosis";"Toxicity of botulinum toxin type B (BoNT/B)";"Neurexins and neuroligins";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_8698.3	22	MetaCyc: PWY-7619;MetaCyc: PWY-7728;MetaCyc: PWY-8041;Reactome: R-HSA-75876;MetaCyc: PWY-7601;MetaCyc: PWY-7724;MetaCyc: PWY-7592;MetaCyc: PWY-7725;MetaCyc: PWY-7036;MetaCyc: PWY-6598;MetaCyc: PWY-7727;MetaCyc: PWY-5353;MetaCyc: PWY-7606;MetaCyc: PWY-6958;MetaCyc: PWY-7726;MetaCyc: PWY-7035;KEGG: 00062+4.2.1.134;MetaCyc: PWY-7053;MetaCyc: PWY-5080;MetaCyc: PWY-7049;MetaCyc: PWY-6433;MetaCyc: PWY-7602	"Juniperonate biosynthesis";"(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase)";"Ultra-long-chain fatty acid biosynthesis";"Synthesis of very long-chain fatty acyl-CoAs";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis III (6-desaturase, mammals)";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Very long chain fatty acid biosynthesis II";"Sciadonate biosynthesis";"Docosahexaenoate biosynthesis IV (4-desaturase, mammals)";"Arachidonate biosynthesis I (6-desaturase, lower eukaryotes)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Icosapentaenoate biosynthesis I (lower eukaryotes)";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"(9Z)-tricosene biosynthesis";"Fatty acid elongation";"Docosahexaenoate biosynthesis I (lower eukaryotes)";"Very long chain fatty acid biosynthesis I";"Icosapentaenoate biosynthesis II (6-desaturase, mammals)";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)"
JAMg_model_20735.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_8550.2	14	MetaCyc: PWY-5080;MetaCyc: PWY-7725;MetaCyc: PWY-7602;MetaCyc: PWY-6433;MetaCyc: PWY-7601;MetaCyc: PWY-7724;Reactome: R-HSA-75876;MetaCyc: PWY-7035;MetaCyc: PWY-5972;KEGG: 00062+2.3.1.199;MetaCyc: PWY-6598;MetaCyc: PWY-7619;MetaCyc: PWY-7036;MetaCyc: PWY-8041	"Very long chain fatty acid biosynthesis I";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Hydroxylated fatty acid biosynthesis (plants)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Synthesis of very long-chain fatty acyl-CoAs";"(9Z)-tricosene biosynthesis";"Stearate biosynthesis I (animals)";"Fatty acid elongation";"Sciadonate biosynthesis";"Juniperonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Ultra-long-chain fatty acid biosynthesis"
JAMg_model_14662.1	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_14202.1	4	KEGG: 00250+6.3.4.4;Reactome: R-HSA-73817;KEGG: 00230+6.3.4.4;MetaCyc: PWY-7219	"Alanine, aspartate and glutamate metabolism";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Adenosine ribonucleotides de novo biosynthesis"
JAMg_model_13697.1	1	Reactome: R-HSA-432722	"Golgi Associated Vesicle Biogenesis"
JAMg_model_19789.1	2	Reactome: R-HSA-1660499;Reactome: R-HSA-1632852	"Synthesis of PIPs at the plasma membrane";"Macroautophagy"
JAMg_model_13645.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_4772.3	2	Reactome: R-HSA-201722;Reactome: R-HSA-3769402	"Formation of the beta-catenin:TCF transactivating complex";"Deactivation of the beta-catenin transactivating complex"
JAMg_model_1293.3	6	MetaCyc: PWY-8004;MetaCyc: PWY-1622;KEGG: 00010+5.4.2.11;KEGG: 00260+5.4.2.11;KEGG: 00680+5.4.2.11;MetaCyc: PWY-5484	"Entner-Doudoroff pathway I";"Formaldehyde assimilation I (serine pathway)";"Glycolysis / Gluconeogenesis";"Glycine, serine and threonine metabolism";"Methane metabolism";"Glycolysis II (from fructose 6-phosphate)"
JAMg_model_20489.3	11	Reactome: R-HSA-3371378;Reactome: R-HSA-5218900;Reactome: R-HSA-9013957;Reactome: R-HSA-140534;Reactome: R-HSA-75157;Reactome: R-HSA-69416;Reactome: R-HSA-933543;Reactome: R-HSA-5357786;Reactome: R-HSA-75158;Reactome: R-HSA-2562578;Reactome: R-HSA-5213460	"Regulation by c-FLIP";"CASP8 activity is inhibited";"TLR3-mediated TICAM1-dependent programmed cell death";"Caspase activation via Death Receptors in the presence of ligand";"FasL/ CD95L signaling";"Dimerization of procaspase-8";"NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10";"TNFR1-induced proapoptotic signaling";"TRAIL signaling";"TRIF-mediated programmed cell death";"RIPK1-mediated regulated necrosis"
JAMg_model_8621.1	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_16209.1	5	Reactome: R-HSA-75105;Reactome: R-HSA-2426168;Reactome: R-HSA-163765;Reactome: R-HSA-199220;Reactome: R-HSA-9029558	"Fatty acyl-CoA biosynthesis";"Activation of gene expression by SREBF (SREBP)";"ChREBP activates metabolic gene expression";"Vitamin B5 (pantothenate) metabolism";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis"
JAMg_model_8644.1	10	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-442742;Reactome: R-HSA-444257;KEGG: 05170+2.7.11.1;Reactome: R-HSA-437239	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Human cytomegalovirus infection";"CREB1 phosphorylation through NMDA receptor-mediated activation of RAS signaling";"RSK activation";"Human immunodeficiency virus 1 infection";"Recycling pathway of L1"
JAMg_model_11253.1	5	Reactome: R-HSA-9615710;Reactome: R-HSA-917729;Reactome: R-HSA-162588;Reactome: R-HSA-9610379;Reactome: R-HSA-174490	"Late endosomal microautophagy";"Endosomal Sorting Complex Required For Transport (ESCRT)";"Budding and maturation of HIV virion";"HCMV Late Events";"Membrane binding and targetting of GAG proteins"
JAMg_model_3525.1	5	Reactome: R-HSA-532668;Reactome: R-HSA-381426;Reactome: R-HSA-8957275;Reactome: R-HSA-901042;Reactome: R-HSA-879415	"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Post-translational protein phosphorylation";"Calnexin/calreticulin cycle";"Advanced glycosylation endproduct receptor signaling"
JAMg_model_10134.2	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_8647.1	10	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 05163+2.7.11.1;Reactome: R-HSA-442742;Reactome: R-HSA-444257;KEGG: 05170+2.7.11.1;Reactome: R-HSA-437239	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Human cytomegalovirus infection";"CREB1 phosphorylation through NMDA receptor-mediated activation of RAS signaling";"RSK activation";"Human immunodeficiency virus 1 infection";"Recycling pathway of L1"
JAMg_model_20391.5	4	KEGG: 00983+6.3.5.2;Reactome: R-HSA-73817;MetaCyc: PWY-7221;KEGG: 00230+6.3.5.2	"Drug metabolism - other enzymes";"Purine ribonucleoside monophosphate biosynthesis";"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_8962.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_7951.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_4265.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_19687.1	4	Reactome: R-HSA-446199;KEGG: 00900+2.5.1.87;Reactome: R-HSA-4755609;MetaCyc: PWY-6129	"Synthesis of Dolichyl-phosphate";"Terpenoid backbone biosynthesis";"Defective DHDDS causes retinitis pigmentosa 59";"Dolichol and dolichyl phosphate biosynthesis"
JAMg_model_8153.7	3	Reactome: R-HSA-977347;KEGG: 00680+3.1.3.3;KEGG: 00260+3.1.3.3	"Serine biosynthesis";"Methane metabolism";"Glycine, serine and threonine metabolism"
JAMg_model_16950.1	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_19813.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_9277.5	3	Reactome: R-HSA-9033241;Reactome: R-HSA-8866654;Reactome: R-HSA-9603798	"Peroxisomal protein import";"E3 ubiquitin ligases ubiquitinate target proteins";"Class I peroxisomal membrane protein import"
JAMg_model_16950.2	1	Reactome: R-HSA-1660662	"Glycosphingolipid metabolism"
JAMg_model_551.3	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_12405.1	3	Reactome: R-HSA-5678771;Reactome: R-HSA-382556;Reactome: R-HSA-1989781	"Defective ABCB4 causes progressive familial intrahepatic cholestasis 3, intrahepatic cholestasis of pregnancy 3 and gallbladder disease 1";"ABC-family proteins mediated transport";"PPARA activates gene expression"
JAMg_model_6360.5	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_6612.3	1	Reactome: R-HSA-5601884	"PIWI-interacting RNA (piRNA) biogenesis"
JAMg_model_12972.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_5205.3	7	Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-165159;Reactome: R-HSA-5628897;Reactome: R-HSA-380972;Reactome: R-HSA-166208;Reactome: R-HSA-9639288	"Regulation of PTEN gene transcription";"Macroautophagy";"mTOR signalling";"TP53 Regulates Metabolic Genes";"Energy dependent regulation of mTOR by LKB1-AMPK";"mTORC1-mediated signalling";"Amino acids regulate mTORC1"
JAMg_model_3198.5	1	Reactome: R-HSA-1483191	"Synthesis of PC"
JAMg_model_11411.5	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_12265.1	13	MetaCyc: PWY-6351;MetaCyc: PWY-8052;Reactome: R-HSA-2871796;Reactome: R-HSA-202433;Reactome: R-HSA-9027277;Reactome: R-HSA-2424491;KEGG: 04070+3.1.4.11;Reactome: R-HSA-2871809;MetaCyc: PWY-7039;Reactome: R-HSA-2029485;KEGG: 00562+3.1.4.11;Reactome: R-HSA-1855204;MetaCyc: PWY-6367	"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"FCERI mediated MAPK activation";"Generation of second messenger molecules";"Erythropoietin activates Phospholipase C gamma (PLCG)";"DAP12 signaling";"Phosphatidylinositol signaling system";"FCERI mediated Ca+2 mobilization";"Phosphatidate metabolism, as a signaling molecule";"Role of phospholipids in phagocytosis";"Inositol phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"D-myo-inositol-5-phosphate metabolism"
JAMg_model_9791.1	3	Reactome: R-HSA-749476;Reactome: R-HSA-76061;Reactome: R-HSA-76066	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Initiation From Type 1 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter"
JAMg_model_9079.1	2	Reactome: R-HSA-72163;Reactome: R-HSA-72165	"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_10713.2	2	Reactome: R-HSA-163210;Reactome: R-HSA-8949613	"Formation of ATP by chemiosmotic coupling";"Cristae formation"
JAMg_model_19133.3	13	KEGG: 00720+6.2.1.5;Reactome: R-HSA-71403;MetaCyc: PWY-5537;KEGG: 00640+6.2.1.5;KEGG: 00020+6.2.1.5;MetaCyc: PWY-6969;MetaCyc: PWY-5913;MetaCyc: PWY-5392;MetaCyc: PWY-6728;MetaCyc: PWY-7384;MetaCyc: PWY-5690;KEGG: 00660+6.2.1.5;MetaCyc: PWY-5538	"Carbon fixation pathways in prokaryotes";"Citric acid cycle (TCA cycle)";"Pyruvate fermentation to acetate V";"Propanoate metabolism";"Citrate cycle (TCA cycle)";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)";"Reductive TCA cycle II";"Methylaspartate cycle";"Anaerobic energy metabolism (invertebrates, mitochondrial)";"TCA cycle II (plants and fungi)";"C5-Branched dibasic acid metabolism";"Pyruvate fermentation to acetate VI"
JAMg_model_10854.3	6	Reactome: R-HSA-5693616;Reactome: R-HSA-6804756;Reactome: R-HSA-69473;Reactome: R-HSA-5693607;Reactome: R-HSA-5685938;Reactome: R-HSA-176187	"Presynaptic phase of homologous DNA pairing and strand exchange";"Regulation of TP53 Activity through Phosphorylation";"G2/M DNA damage checkpoint";"Processing of DNA double-strand break ends";"HDR through Single Strand Annealing (SSA)";"Activation of ATR in response to replication stress"
JAMg_model_20450.1	5	Reactome: R-HSA-499943;MetaCyc: PWY-7185;MetaCyc: PWY-7177;MetaCyc: PWY-7176;KEGG: 00240+6.3.4.2	"Interconversion of nucleotide di- and triphosphates";"UTP and CTP dephosphorylation I";"UTP and CTP dephosphorylation II";"UTP and CTP de novo biosynthesis";"Pyrimidine metabolism"
JAMg_model_13501.3	6	Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_6869.1	1	Reactome: R-HSA-6790901	"rRNA modification in the nucleus and cytosol"
JAMg_model_8459.1	3	Reactome: R-HSA-2142691;MetaCyc: PWY-7533;Reactome: R-HSA-5423646	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Gliotoxin biosynthesis";"Aflatoxin activation and detoxification"
JAMg_model_19365.1	26	Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-389960;Reactome: R-HSA-983189;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-389977;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332	"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"Formation of tubulin folding intermediates by CCT/TriC";"Kinesins";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"HCMV Early Events";"Mitotic Prometaphase";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"Post-chaperonin tubulin folding pathway";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_8614.1	14	Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-167243;Reactome: R-HSA-6796648;Reactome: R-HSA-167290;Reactome: R-HSA-167238;Reactome: R-HSA-167200;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-167287;Reactome: R-HSA-167242	"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"Tat-mediated HIV elongation arrest and recovery";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of HIV elongation";"Pausing and recovery of Tat-mediated HIV elongation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"HIV elongation arrest and recovery";"Abortive elongation of HIV-1 transcript in the absence of Tat"
JAMg_model_4945.1	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_11724.2	13	Reactome: R-HSA-196836;KEGG: 00480+2.5.1.18+1.8.5.1;MetaCyc: PWY-6370;KEGG: 00980+2.5.1.18;KEGG: 00982+2.5.1.18;MetaCyc: PWY-7112;KEGG: 00053+1.8.5.1;Reactome: R-HSA-156590;MetaCyc: PWY-6842;MetaCyc: PWY-4061;MetaCyc: PWY-7533;MetaCyc: PWY-2261;KEGG: 00983+2.5.1.18	"Vitamin C (ascorbate) metabolism";"Glutathione metabolism";"Ascorbate recycling (cytosolic)";"Metabolism of xenobiotics by cytochrome P450";"Drug metabolism - cytochrome P450";"4-hydroxy-2-nonenal detoxification";"Ascorbate and aldarate metabolism";"Glutathione conjugation";"Glutathione-mediated detoxification II";"Glutathione-mediated detoxification I";"Gliotoxin biosynthesis";"Ascorbate glutathione cycle";"Drug metabolism - other enzymes"
JAMg_model_299.2	2	Reactome: R-HSA-983168;Reactome: R-HSA-110320	"Antigen processing: Ubiquitination & Proteasome degradation";"Translesion Synthesis by POLH"
JAMg_model_12279.1	18	KEGG: 00250+2.6.1.1;KEGG: 00401+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00270+2.6.1.1;MetaCyc: PWY-7383;MetaCyc: PWY-6643;MetaCyc: PWY-6638;MetaCyc: PWY-7115;KEGG: 00360+2.6.1.1;KEGG: 00220+2.6.1.1;KEGG: 00960+2.6.1.1;MetaCyc: PWY-7117;KEGG: 00400+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00710+2.6.1.1;MetaCyc: PWY-6642;KEGG: 00350+2.6.1.1;KEGG: 00950+2.6.1.1	"Alanine, aspartate and glutamate metabolism";"Novobiocin biosynthesis";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism";"Anaerobic energy metabolism (invertebrates, cytosol)";"Coenzyme M biosynthesis II";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Phenylalanine metabolism";"Arginine biosynthesis";"Tropane, piperidine and pyridine alkaloid biosynthesis";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Arginine and proline metabolism";"Carbon fixation in photosynthetic organisms";"(R)-cysteate degradation";"Tyrosine metabolism";"Isoquinoline alkaloid biosynthesis"
JAMg_model_20869.1	2	Reactome: R-HSA-6783310;Reactome: R-HSA-6796648	"Fanconi Anemia Pathway";"TP53 Regulates Transcription of DNA Repair Genes"
JAMg_model_12468.1	1	Reactome: R-HSA-8850843	"Phosphate bond hydrolysis by NTPDase proteins"
JAMg_model_4972.2	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_13043.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_799.2	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_21160.2	4	KEGG: 00750+1.4.3.5;MetaCyc: PWY-7204;Reactome: R-HSA-964975;MetaCyc: PWY-7282	"Vitamin B6 metabolism";"Pyridoxal 5'-phosphate salvage II (plants)";"Vitamins B6 activation to pyridoxal phosphate";"4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis"
JAMg_model_13226.1	3	KEGG: 00561+2.7.1.30;MetaCyc: PWY-4261;Reactome: R-HSA-75109	"Glycerolipid metabolism";"Glycerol degradation I";"Triglyceride biosynthesis"
JAMg_model_18910.2	1	Reactome: R-HSA-2142789	"Ubiquinol biosynthesis"
JAMg_model_4828.3	3	Reactome: R-HSA-525793;Reactome: R-HSA-9634638;Reactome: R-HSA-5663220	"Myogenesis";"Estrogen-dependent nuclear events downstream of ESR-membrane signaling";"RHO GTPases Activate Formins"
JAMg_model_7189.3	12	KEGG: 05163+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05170+2.7.11.1;Reactome: R-HSA-416482;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-193648;Reactome: R-HSA-416476;KEGG: 05165+2.7.11.1;Reactome: R-HSA-194840;KEGG: 04714+2.7.11.1	"Human cytomegalovirus infection";"DCC mediated attractive signaling";"Human immunodeficiency virus 1 infection";"G alpha (12/13) signalling events";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Relaxin signaling pathway";"NRAGE signals death through JNK";"G alpha (q) signalling events";"Human papillomavirus infection";"Rho GTPase cycle";"Thermogenesis"
JAMg_model_1524.1	5	Reactome: R-HSA-5083630;Reactome: R-HSA-1912408;Reactome: R-HSA-350054;Reactome: R-HSA-1912399;Reactome: R-HSA-1912420	"Defective LFNG causes SCDO3";"Pre-NOTCH Transcription and Translation";"Notch-HLH transcription pathway";"Pre-NOTCH Processing in the Endoplasmic Reticulum";"Pre-NOTCH Processing in Golgi"
JAMg_model_15526.1	7	MetaCyc: PWY-7210;MetaCyc: PWY-7185;MetaCyc: PWY-6545;KEGG: 00730+3.6.1.15;MetaCyc: PWY-7184;KEGG: 00230+3.6.1.15;MetaCyc: PWY-7198	"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"UTP and CTP dephosphorylation I";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Thiamine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Purine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV"
JAMg_model_990.4	14	KEGG: 00260+2.1.2.1;MetaCyc: PWY-1622;MetaCyc: PWY-5497;MetaCyc: PWY-2201;KEGG: 00670+2.1.2.1;MetaCyc: PWY-3661-1;MetaCyc: PWY-181;MetaCyc: PWY-3661;MetaCyc: PWY-2161;Reactome: R-HSA-196757;KEGG: 00680+2.1.2.1;KEGG: 00630+2.1.2.1;MetaCyc: PWY-3841;KEGG: 00460+2.1.2.1	"Glycine, serine and threonine metabolism";"Formaldehyde assimilation I (serine pathway)";"Purine nucleobases degradation II (anaerobic)";"Folate transformations I";"One carbon pool by folate";"Glycine betaine degradation II (mammalian)";"Photorespiration ";"Glycine betaine degradation I";"Folate polyglutamylation";"Metabolism of folate and pterines";"Methane metabolism";"Glyoxylate and dicarboxylate metabolism";"Folate transformations II (plants)";"Cyanoamino acid metabolism"
JAMg_model_10060.2	2	KEGG: 00260+2.3.1.29;Reactome: R-HSA-8849175	"Glycine, serine and threonine metabolism";"Threonine catabolism"
JAMg_model_16966.4	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_20389.3	1	Reactome: R-HSA-1660499	"Synthesis of PIPs at the plasma membrane"
JAMg_model_1523.5	2	Reactome: R-HSA-8949613;Reactome: R-HSA-1268020	"Cristae formation";"Mitochondrial protein import"
JAMg_model_9932.4	2	Reactome: R-HSA-110320;Reactome: R-HSA-983168	"Translesion Synthesis by POLH";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_16586.2	3	KEGG: 00260+2.1.2.10;KEGG: 00670+2.1.2.10;Reactome: R-HSA-6783984	"Glycine, serine and threonine metabolism";"One carbon pool by folate";"Glycine degradation"
JAMg_model_13458.1	2	Reactome: R-HSA-5673001;Reactome: R-HSA-442982	"RAF/MAP kinase cascade";"Ras activation upon Ca2+ influx through NMDA receptor"
JAMg_model_13201.2	9	Reactome: R-HSA-1971475;Reactome: R-HSA-975634;Reactome: R-HSA-3560783;Reactome: R-HSA-2022928;Reactome: R-HSA-2024096;Reactome: R-HSA-4420332;Reactome: R-HSA-3656253;Reactome: R-HSA-3560801;Reactome: R-HSA-3656237	"A tetrasaccharide linker sequence is required for GAG synthesis";"Retinoid metabolism and transport";"Defective B4GALT7 causes EDS, progeroid type";"HS-GAG biosynthesis";"HS-GAG degradation";"Defective B3GALT6 causes EDSP2 and SEMDJL1";"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"Defective B3GAT3 causes JDSSDHD";"Defective EXT2 causes exostoses 2"
JAMg_model_8807.3	7	KEGG: 05163+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04926+2.7.11.1	"Human cytomegalovirus infection";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Human immunodeficiency virus 1 infection";"Relaxin signaling pathway"
JAMg_model_15438.2	17	Reactome: R-HSA-937042;Reactome: R-HSA-445989;Reactome: R-HSA-4086398;Reactome: R-HSA-5607764;Reactome: R-HSA-168638;Reactome: R-HSA-937072;Reactome: R-HSA-450321;Reactome: R-HSA-5689880;Reactome: R-HSA-975163;Reactome: R-HSA-9645460;Reactome: R-HSA-202424;Reactome: R-HSA-9020702;Reactome: R-HSA-5357956;Reactome: R-HSA-2871837;Reactome: R-HSA-1169091;Reactome: R-HSA-450302;Reactome: R-HSA-9014325	"IRAK2 mediated activation of TAK1 complex";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"Ca2+ pathway";"CLEC7A (Dectin-1) signaling";"NOD1/2 Signaling Pathway";"TRAF6-mediated induction of TAK1 complex within TLR4 complex";"JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1";"Ub-specific processing proteases";"IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation";"Alpha-protein kinase 1 signaling pathway";"Downstream TCR signaling";"Interleukin-1 signaling";"TNFR1-induced NFkappaB signaling pathway";"FCERI mediated NF-kB activation";"Activation of NF-kappaB in B cells";"activated TAK1 mediates p38 MAPK activation";"TICAM1,TRAF6-dependent induction of TAK1 complex"
JAMg_model_5304.1	5	MetaCyc: PWY-7922;KEGG: 00515+2.4.1.109;MetaCyc: PWY-7979;MetaCyc: PWY-7921;KEGG: 00514+2.4.1.109	"Protein O-mannosylation II (mammals, core M1 and core M2)";"Mannose type O-glycan biosynthesis";"Protein O-mannosylation III (mammals, core M3)";"Protein O-mannosylation I (yeast)";"Other types of O-glycan biosynthesis"
JAMg_model_14921.1	1	Reactome: R-HSA-4615885	"SUMOylation of DNA replication proteins"
JAMg_model_14049.1	3	MetaCyc: PWY-5491;KEGG: 00730+3.1.3.1;KEGG: 00790+3.1.3.1	"Diethylphosphate degradation";"Thiamine metabolism";"Folate biosynthesis"
JAMg_model_18337.2	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_15651.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_5119.3	11	Reactome: R-HSA-113507;Reactome: R-HSA-68867;Reactome: R-HSA-69017;Reactome: R-HSA-176187;Reactome: R-HSA-68689;Reactome: R-HSA-1362277;Reactome: R-HSA-69205;Reactome: R-HSA-68949;Reactome: R-HSA-68962;Reactome: R-HSA-68616;Reactome: R-HSA-68827	"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the pre-replicative complex";"CDK-mediated phosphorylation and removal of Cdc6";"Activation of ATR in response to replication stress";"CDC6 association with the ORC:origin complex";"Transcription of E2F targets under negative control by DREAM complex";"G1/S-Specific Transcription";"Orc1 removal from chromatin";"Activation of the pre-replicative complex";"Assembly of the ORC complex at the origin of replication";"CDT1 association with the CDC6:ORC:origin complex"
JAMg_model_16435.2	13	Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_19971.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_16752.2	2	Reactome: R-HSA-3108214;Reactome: R-HSA-5685938	"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)"
JAMg_model_4741.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_9166.1	3	Reactome: R-HSA-379716;Reactome: R-HSA-2408522;KEGG: 00970+6.1.1.19	"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism";"Aminoacyl-tRNA biosynthesis"
JAMg_model_10093.5	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_1142.1	3	KEGG: 04070+2.7.4.24+2.7.4.21;Reactome: R-HSA-1855167;MetaCyc: PWY-6369	"Phosphatidylinositol signaling system";"Synthesis of pyrophosphates in the cytosol";"Inositol diphosphates biosynthesis"
JAMg_model_2047.1	2	Reactome: R-HSA-5576893;Reactome: R-HSA-5576892	"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation"
JAMg_model_9054.8	3	MetaCyc: PWY-6117;KEGG: 00330+2.3.1.57;MetaCyc: PWY-0	"Spermine and spermidine degradation I";"Arginine and proline metabolism";"Putrescine degradation III"
JAMg_model_14966.1	1	Reactome: R-HSA-5689880	"Ub-specific processing proteases"
JAMg_model_18047.2	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_11532.2	20	Reactome: R-HSA-1257604;Reactome: R-HSA-9639288;Reactome: R-HSA-1632852;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-166208;KEGG: 04926+2.7.11.1;Reactome: R-HSA-5628897;KEGG: 05163+2.7.11.1;Reactome: R-HSA-389357;KEGG: 05170+2.7.11.1;Reactome: R-HSA-5218920;Reactome: R-HSA-3371571;Reactome: R-HSA-165159;Reactome: R-HSA-8943724;KEGG: 04714+2.7.11.1;Reactome: R-HSA-6804757;Reactome: R-HSA-5674400;Reactome: R-HSA-380972	"PIP3 activates AKT signaling";"Amino acids regulate mTORC1";"Macroautophagy";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human papillomavirus infection";"mTORC1-mediated signalling";"Relaxin signaling pathway";"TP53 Regulates Metabolic Genes";"Human cytomegalovirus infection";"CD28 dependent PI3K/Akt signaling";"Human immunodeficiency virus 1 infection";"VEGFR2 mediated vascular permeability";"HSF1-dependent transactivation";"mTOR signalling";"Regulation of PTEN gene transcription";"Thermogenesis";"Regulation of TP53 Degradation";"Constitutive Signaling by AKT1 E17K in Cancer";"Energy dependent regulation of mTOR by LKB1-AMPK"
JAMg_model_10872.1	9	MetaCyc: PWY-7003;Reactome: R-HSA-70171;MetaCyc: PWY-1042;MetaCyc: PWY-6901;MetaCyc: PWY-5484;Reactome: R-HSA-70263;KEGG: 00010+1.2.1.12;KEGG: 00710+1.2.1.12;MetaCyc: PWY-8004	"Glycerol degradation to butanol";"Glycolysis";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Glycolysis II (from fructose 6-phosphate)";"Gluconeogenesis";"Glycolysis / Gluconeogenesis";"Carbon fixation in photosynthetic organisms";"Entner-Doudoroff pathway I"
JAMg_model_9900.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_7336.1	4	KEGG: 00513+2.4.1.260;Reactome: R-HSA-4720489;KEGG: 00510+2.4.1.260;Reactome: R-HSA-446193	"Various types of N-glycan biosynthesis";"Defective ALG12 causes ALG12-CDG (CDG-1g)";"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein"
JAMg_model_18900.1	20	Reactome: R-HSA-6782210;Reactome: R-HSA-176187;Reactome: R-HSA-110320;Reactome: R-HSA-5656169;Reactome: R-HSA-5685942;Reactome: R-HSA-5693607;Reactome: R-HSA-5696397;Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-110312;Reactome: R-HSA-5696400;Reactome: R-HSA-6782135;Reactome: R-HSA-69091;Reactome: R-HSA-5655862;Reactome: R-HSA-110314;Reactome: R-HSA-6804756;Reactome: R-HSA-174411;Reactome: R-HSA-5656121;Reactome: R-HSA-5651801;Reactome: R-HSA-5685938	"Gap-filling DNA repair synthesis and ligation in TC-NER";"Activation of ATR in response to replication stress";"Translesion Synthesis by POLH";"Termination of translesion DNA synthesis";"HDR through Homologous Recombination (HRR)";"Processing of DNA double-strand break ends";"Gap-filling DNA repair synthesis and ligation in GG-NER";"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Translesion synthesis by REV1";"Dual Incision in GG-NER";"Dual incision in TC-NER";"Polymerase switching";"Translesion synthesis by POLK";"Recognition of DNA damage by PCNA-containing replication complex";"Regulation of TP53 Activity through Phosphorylation";"Polymerase switching on the C-strand of the telomere";"Translesion synthesis by POLI";"PCNA-Dependent Long Patch Base Excision Repair";"HDR through Single Strand Annealing (SSA)"
JAMg_model_9706.2	1	Reactome: R-HSA-389957	"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_8370.2	2	Reactome: R-HSA-2029482;Reactome: R-HSA-5663213	"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs"
JAMg_model_17048.1	8	KEGG: 04151+2.7.11.1;KEGG: 04150+2.7.11.1;KEGG: 04660+2.7.10.2;KEGG: 04926+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1	"PI3K-Akt signaling pathway";"mTOR signaling pathway";"T cell receptor signaling pathway";"Relaxin signaling pathway";"Human papillomavirus infection";"Thermogenesis";"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection"
JAMg_model_628.1	6	KEGG: 00030+3.1.1.17;MetaCyc: PWY-7165;MetaCyc: PWY-2221;MetaCyc: PWY-5530;KEGG: 00053+3.1.1.17;KEGG: 00930+3.1.1.17	"Pentose phosphate pathway";"L-ascorbate biosynthesis VI (engineered pathway)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Sorbitol biosynthesis II";"Ascorbate and aldarate metabolism";"Caprolactam degradation"
JAMg_model_1523.11	2	Reactome: R-HSA-1268020;Reactome: R-HSA-8949613	"Mitochondrial protein import";"Cristae formation"
JAMg_model_20334.1	1	Reactome: R-HSA-156842	"Eukaryotic Translation Elongation"
JAMg_model_13381.4	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_10334.1	1	Reactome: R-HSA-201681	"TCF dependent signaling in response to WNT"
JAMg_model_18142.1	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_1359.4	12	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-194840;KEGG: 05165+2.7.11.1;KEGG: 04714+2.7.11.1;Reactome: R-HSA-193648;Reactome: R-HSA-416476;KEGG: 04926+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Rho GTPase cycle";"Human papillomavirus infection";"Thermogenesis";"NRAGE signals death through JNK";"G alpha (q) signalling events";"Relaxin signaling pathway";"DCC mediated attractive signaling";"Human cytomegalovirus infection";"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection"
JAMg_model_20380.1	10	Reactome: R-HSA-1483191;Reactome: R-HSA-8939243;Reactome: R-HSA-2514853;Reactome: R-HSA-8948751;Reactome: R-HSA-445144;Reactome: R-HSA-8934903;Reactome: R-HSA-6814122;Reactome: R-HSA-6804756;Reactome: R-HSA-201688;Reactome: R-HSA-6798695	"Synthesis of PC";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Condensation of Prometaphase Chromosomes";"Regulation of PTEN stability and activity";"Signal transduction by L1";"Receptor Mediated Mitophagy";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Regulation of TP53 Activity through Phosphorylation";"WNT mediated activation of DVL";"Neutrophil degranulation"
JAMg_model_2429.1	24	Reactome: R-HSA-983189;Reactome: R-HSA-9609736;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-5617833;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-2467813;Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-9648025;Reactome: R-HSA-3371497;Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295	"Kinesins";"Assembly and cell surface presentation of NMDA receptors";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"HCMV Early Events";"Mitotic Prometaphase";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Cilium Assembly";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Separation of Sister Chromatids";"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"EML4 and NUDC in mitotic spindle formation";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"RHO GTPases Activate Formins";"Aggrephagy";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation"
JAMg_model_12415.1	1	Reactome: R-HSA-532668	"N-glycan trimming in the ER and Calnexin/Calreticulin cycle"
JAMg_model_13068.1	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_13968.2	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_15031.1	1	Reactome: R-HSA-428890	"Role of ABL in ROBO-SLIT signaling"
JAMg_model_2629.1	2	MetaCyc: PWY-6111;KEGG: 00071+2.3.1.21	"Mitochondrial L-carnitine shuttle";"Fatty acid degradation"
JAMg_model_8852.3	1	Reactome: R-HSA-8849932	"Synaptic adhesion-like molecules"
JAMg_model_1515.1	1	Reactome: R-HSA-1483101	"Synthesis of PS"
JAMg_model_4620.1	1	Reactome: R-HSA-2559584	"Formation of Senescence-Associated Heterochromatin Foci (SAHF)"
JAMg_model_238.2	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_3870.1	2	Reactome: R-HSA-3065678;Reactome: R-HSA-3065676	"SUMO is transferred from E1 to E2 (UBE2I, UBC9)";"SUMO is conjugated to E1 (UBA2:SAE1)"
JAMg_model_1010.1	3	Reactome: R-HSA-72187;Reactome: R-HSA-159236;Reactome: R-HSA-73856	"mRNA 3'-end processing";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"RNA Polymerase II Transcription Termination"
JAMg_model_6333.4	10	MetaCyc: PWY-5892;MetaCyc: PWY-5844;MetaCyc: PWY-5895;MetaCyc: PWY-7996;KEGG: 00130+2.1.1.163;MetaCyc: PWY-5891;Reactome: R-HSA-2142789;MetaCyc: PWY-5890;MetaCyc: PWY-5849;MetaCyc: PWY-5839	"Menaquinol-12 biosynthesis";"Menaquinol-9 biosynthesis";"Menaquinol-13 biosynthesis";"Menaquinol-4 biosynthesis I";"Ubiquinone and other terpenoid-quinone biosynthesis";"Menaquinol-11 biosynthesis";"Ubiquinol biosynthesis";"Menaquinol-10 biosynthesis";"Menaquinol-6 biosynthesis";"Menaquinol-7 biosynthesis"
JAMg_model_19942.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_18090.3	4	Reactome: R-HSA-947581;KEGG: 00790+4.1.99.22;KEGG: 00790+4.6.1.17;MetaCyc: PWY-6823	"Molybdenum cofactor biosynthesis";"Folate biosynthesis";"Folate biosynthesis";"Molybdenum cofactor biosynthesis"
JAMg_model_10124.2	6	KEGG: 00020+4.2.1.3;KEGG: 00290+4.2.1.33;Reactome: R-HSA-71403;KEGG: 00630+4.2.1.3;Reactome: R-HSA-1268020;KEGG: 00720+4.2.1.3	"Citrate cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis";"Citric acid cycle (TCA cycle)";"Glyoxylate and dicarboxylate metabolism";"Mitochondrial protein import";"Carbon fixation pathways in prokaryotes"
JAMg_model_3076.1	1	Reactome: R-HSA-432047	"Passive transport by Aquaporins"
JAMg_model_12770.1	1	Reactome: R-HSA-163560	"Triglyceride catabolism"
JAMg_model_1274.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_18298.1	3	KEGG: 00730+3.1.3.1;MetaCyc: PWY-5491;KEGG: 00790+3.1.3.1	"Thiamine metabolism";"Diethylphosphate degradation";"Folate biosynthesis"
JAMg_model_5107.3	6	Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220;Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877	"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins";"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase"
JAMg_model_13907.2	5	Reactome: R-HSA-6807878;Reactome: R-HSA-6811440;Reactome: R-HSA-204005;Reactome: R-HSA-6811438;Reactome: R-HSA-6811434	"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network";"COPII-mediated vesicle transport";"Intra-Golgi traffic";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_14956.2	2	Reactome: R-HSA-380320;Reactome: R-HSA-68875	"Recruitment of NuMA to mitotic centrosomes";"Mitotic Prophase"
JAMg_model_359.6	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_5088.2	16	Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00680+4.2.1.11;MetaCyc: PWY-5484;MetaCyc: PWY-8004;MetaCyc: PWY-1622;MetaCyc: PWY-6886;Reactome: R-HSA-70263;MetaCyc: PWY-5723;MetaCyc: PWY-6142;KEGG: 00010+4.2.1.11;MetaCyc: PWY-1042;MetaCyc: PWY-6901;MetaCyc: PWY-7218;MetaCyc: PWY-7124;MetaCyc: PWY-2221	"Glycolysis";"Glycerol degradation to butanol";"Methane metabolism";"Glycolysis II (from fructose 6-phosphate)";"Entner-Doudoroff pathway I";"Formaldehyde assimilation I (serine pathway)";"1-butanol autotrophic biosynthesis (engineered)";"Gluconeogenesis";"Rubisco shunt";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)";"Glycolysis / Gluconeogenesis";"Glycolysis IV (plant cytosol)";"Superpathway of glucose and xylose degradation";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Ethylene biosynthesis V (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)"
JAMg_model_12288.1	7	KEGG: 00600+2.4.1.80;MetaCyc: PWY-7838;MetaCyc: PWY-7841;MetaCyc: PWY-5129;MetaCyc: PWY-7836;Reactome: R-HSA-1660662;MetaCyc: PWY-7839	"Sphingolipid metabolism";"Globo-series glycosphingolipids biosynthesis";"Neolacto-series glycosphingolipids biosynthesis";"Sphingolipid biosynthesis (plants)";"Ganglio-series glycosphingolipids biosynthesis";"Glycosphingolipid metabolism";"Lacto-series glycosphingolipids biosynthesis"
JAMg_model_20172.3	9	Reactome: R-HSA-416476;MetaCyc: PWY-6351;MetaCyc: PWY-8052;MetaCyc: PWY-7039;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6367;Reactome: R-HSA-1855204;Reactome: R-HSA-112043;KEGG: 04070+3.1.4.11	"G alpha (q) signalling events";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"2-arachidonoylglycerol biosynthesis";"Phosphatidate metabolism, as a signaling molecule";"Inositol phosphate metabolism";"D-myo-inositol-5-phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol";"PLC beta mediated events";"Phosphatidylinositol signaling system"
JAMg_model_2168.1	12	KEGG: 00591+3.1.1.4;MetaCyc: PWY-8053;KEGG: 00592+3.1.1.4;KEGG: 00564+3.1.1.4;MetaCyc: PWY-7783;MetaCyc: PWY-8051;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;MetaCyc: PWY-7409;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7416;MetaCyc: PWY-6803	"Linoleic acid metabolism";"Anandamide biosynthesis II";"alpha-Linolenic acid metabolism";"Glycerophospholipid metabolism";"Plasmalogen degradation";"Anandamide biosynthesis I";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Phosphatidylcholine acyl editing"
JAMg_model_1400.1	1	KEGG: 00531+3.2.1.35	"Glycosaminoglycan degradation"
JAMg_model_18884.1	1	MetaCyc: PWY-7533	"Gliotoxin biosynthesis"
JAMg_model_9564.3	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_13323.3	3	Reactome: R-HSA-110330;Reactome: R-HSA-110331;Reactome: R-HSA-110357	"Recognition and association of DNA glycosylase with site containing an affected purine";"Cleavage of the damaged purine";"Displacement of DNA glycosylase by APEX1"
JAMg_model_14920.2	8	KEGG: 05163+2.7.11.1;KEGG: 05170+2.7.11.1;Reactome: R-HSA-2028269;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1	"Human cytomegalovirus infection";"Human immunodeficiency virus 1 infection";"Signaling by Hippo";"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway"
JAMg_model_6300.1	6	MetaCyc: PWY-3341;MetaCyc: PWY-6344;MetaCyc: PWY-4981;MetaCyc: PWY-6922;KEGG: 00330+2.6.1.13;Reactome: R-HSA-8964539	"L-proline biosynthesis III (from L-ornithine)";"L-ornithine degradation II (Stickland reaction)";"L-proline biosynthesis II (from arginine)";"L-Ndelta-acetylornithine biosynthesis";"Arginine and proline metabolism";"Glutamate and glutamine metabolism"
JAMg_model_6360.3	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_12705.2	2	Reactome: R-HSA-3214847;Reactome: R-HSA-6804758	"HATs acetylate histones";"Regulation of TP53 Activity through Acetylation"
JAMg_model_5776.3	3	Reactome: R-HSA-2408508;Reactome: R-HSA-1614558;Reactome: R-HSA-1614603	"Metabolism of ingested SeMet, Sec, MeSec into H2Se";"Degradation of cysteine and homocysteine";"Cysteine formation from homocysteine"
JAMg_model_11842.4	17	Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-6790901;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"rRNA modification in the nucleus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation"
JAMg_model_17283.2	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_2130.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_6863.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_8478.3	2	Reactome: R-HSA-611105;Reactome: R-HSA-71403	"Respiratory electron transport";"Citric acid cycle (TCA cycle)"
JAMg_model_20590.1	3	KEGG: 00790+3.1.3.1;KEGG: 00730+3.1.3.1;MetaCyc: PWY-5491	"Folate biosynthesis";"Thiamine metabolism";"Diethylphosphate degradation"
JAMg_model_7875.1	1	Reactome: R-HSA-8849175	"Threonine catabolism"
JAMg_model_14312.2	1	Reactome: R-HSA-1369062	"ABC transporters in lipid homeostasis"
JAMg_model_15704.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_17252.1	3	Reactome: R-HSA-3000171;Reactome: R-HSA-8874081;Reactome: R-HSA-3000157	"Non-integrin membrane-ECM interactions";"MET activates PTK2 signaling";"Laminin interactions"
JAMg_model_11787.1	2	Reactome: R-HSA-9010553;Reactome: R-HSA-975957	"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_7500.1	19	KEGG: 00640+1.3.3.6;MetaCyc: PWY-7726;MetaCyc: PWY-7606;MetaCyc: PWY-7007;MetaCyc: PWY-5136;MetaCyc: PWY-7340;MetaCyc: PWY-6920;KEGG: 00410+1.3.3.6;MetaCyc: PWY-6837;MetaCyc: PWY-7337;MetaCyc: PWY-7574;MetaCyc: PWY-7338;MetaCyc: PWY-7288;MetaCyc: PWY-7858;KEGG: 00071+1.3.3.6;KEGG: 00592+1.3.3.6;MetaCyc: PWY-7854;MetaCyc: PWY-735;MetaCyc: PWY-7291	"Propanoate metabolism";"(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)";"Docosahexaenoate biosynthesis III (6-desaturase, mammals)";"Methyl ketone biosynthesis (engineered)";"Fatty acid beta-oxidation II (plant peroxisome)";"9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)";"6-gingerol analog biosynthesis (engineered)";"beta-Alanine metabolism";"Fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)";"10-cis-heptadecenoyl-CoA degradation (yeast)";"Propanoyl-coa degradation II";"10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)";"Fatty acid beta-oxidation VII (yeast peroxisome)";"(5Z)-dodecenoate biosynthesis II";"Fatty acid degradation";"alpha-Linolenic acid metabolism";"Crotonyl-coa/ethylmalonyl-coa/hydroxybutyryl-coa cycle (engineered)";"Jasmonic acid biosynthesis";"Oleate beta-oxidation (isomerase-dependent, yeast)"
JAMg_model_3435.2	6	Reactome: R-HSA-6791226;Reactome: R-HSA-450385;Reactome: R-HSA-380994;Reactome: R-HSA-450513;Reactome: R-HSA-450604;Reactome: R-HSA-429958	"Major pathway of rRNA processing in the nucleolus and cytosol";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_1909.2	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_19452.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_15557.1	5	KEGG: 00330+1.14.13.39;Reactome: R-HSA-1222556;MetaCyc: PWY-4983;Reactome: R-HSA-392154;KEGG: 00220+1.14.13.39	"Arginine and proline metabolism";"ROS and RNS production in phagocytes";"Nitric oxide biosynthesis II (mammals)";"Nitric oxide stimulates guanylate cyclase";"Arginine biosynthesis"
JAMg_model_12129.3	2	Reactome: R-HSA-5083635;Reactome: R-HSA-5173214	"Defective B3GALTL causes Peters-plus syndrome (PpS)";"O-glycosylation of TSR domain-containing proteins"
JAMg_model_19590.1	5	Reactome: R-HSA-8866654;Reactome: R-HSA-75955;Reactome: R-HSA-674695;Reactome: R-HSA-201722;Reactome: R-HSA-112382	"E3 ubiquitin ligases ubiquitinate target proteins";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events";"Formation of the beta-catenin:TCF transactivating complex";"Formation of RNA Pol II elongation complex"
JAMg_model_10267.2	1	Reactome: R-HSA-426117	"Cation-coupled Chloride cotransporters"
JAMg_model_20331.1	1	Reactome: R-HSA-8955332	"Carboxyterminal post-translational modifications of tubulin"
JAMg_model_4603.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_15875.1	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_3410.1	6	Reactome: R-HSA-72689;Reactome: R-HSA-72649;Reactome: R-HSA-72702;Reactome: R-HSA-156827;Reactome: R-HSA-72706;Reactome: R-HSA-72695	"Formation of a pool of free 40S subunits";"Translation initiation complex formation";"Ribosomal scanning and start codon recognition";"L13a-mediated translational silencing of Ceruloplasmin expression";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex"
JAMg_model_2886.2	10	Reactome: R-HSA-9027276;KEGG: 00562+2.7.1.153;KEGG: 04150+2.7.1.153;KEGG: 04070+2.7.1.153;KEGG: 04151+2.7.1.153;KEGG: 05170+2.7.1.153;Reactome: R-HSA-1660499;MetaCyc: PWY-6352;KEGG: 05165+2.7.1.153;KEGG: 05163+2.7.1.153	"Erythropoietin activates Phosphoinositide-3-kinase (PI3K)";"Inositol phosphate metabolism";"mTOR signaling pathway";"Phosphatidylinositol signaling system";"PI3K-Akt signaling pathway";"Human immunodeficiency virus 1 infection";"Synthesis of PIPs at the plasma membrane";"3-phosphoinositide biosynthesis";"Human papillomavirus infection";"Human cytomegalovirus infection"
JAMg_model_9121.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-6798695	"COPI-dependent Golgi-to-ER retrograde traffic";"Neutrophil degranulation"
JAMg_model_21315.8	15	KEGG: 00230+2.7.1.40;KEGG: 00010+2.7.1.40;MetaCyc: PWY-5484;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-7383;MetaCyc: PWY-7218;MetaCyc: PWY-6886;MetaCyc: PWY-8004;MetaCyc: PWY-2221;MetaCyc: PWY-5723;Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00620+2.7.1.40;MetaCyc: PWY-6142	"Purine metabolism";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"1-butanol autotrophic biosynthesis (engineered)";"Entner-Doudoroff pathway I";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Rubisco shunt";"Glycolysis";"Glycerol degradation to butanol";"Pyruvate metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)"
JAMg_model_5561.1	5	Reactome: R-HSA-983712;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288	"Ion channel transport";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1"
JAMg_model_4005.1	1	Reactome: R-HSA-8876198	"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_17489.1	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_3886.1	3	Reactome: R-HSA-193648;Reactome: R-HSA-194840;Reactome: R-HSA-416482	"NRAGE signals death through JNK";"Rho GTPase cycle";"G alpha (12/13) signalling events"
JAMg_model_2678.3	3	KEGG: 00561+2.7.1.30;Reactome: R-HSA-75109;MetaCyc: PWY-4261	"Glycerolipid metabolism";"Triglyceride biosynthesis";"Glycerol degradation I"
JAMg_model_16896.1	2	Reactome: R-HSA-5678895;Reactome: R-HSA-382556	"Defective CFTR causes cystic fibrosis";"ABC-family proteins mediated transport"
JAMg_model_8481.4	2	Reactome: R-HSA-203927;Reactome: R-HSA-8986944	"MicroRNA (miRNA) biogenesis";"Transcriptional Regulation by MECP2"
JAMg_model_17943.1	5	Reactome: R-HSA-75035;Reactome: R-HSA-5628897;Reactome: R-HSA-1445148;Reactome: R-HSA-5625740;Reactome: R-HSA-111447	"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"TP53 Regulates Metabolic Genes";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"RHO GTPases activate PKNs";"Activation of BAD and translocation to mitochondria"
JAMg_model_997.4	2	Reactome: R-HSA-6782315;MetaCyc: PWY-6829	"tRNA modification in the nucleus and cytosol";"Trna methylation (yeast)"
JAMg_model_13394.3	7	MetaCyc: PWY-3385;MetaCyc: PWY-7782;Reactome: R-HSA-1483191;Reactome: R-HSA-1483213;MetaCyc: PWY-7818;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7886	"Choline biosynthesis I";"Plasmalogen biosynthesis";"Synthesis of PC";"Synthesis of PE";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)";"Glycerophospholipid metabolism";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis"
JAMg_model_1216.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_12313.1	1	Reactome: R-HSA-6787450	"tRNA modification in the mitochondrion"
JAMg_model_15802.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-8876725	"Respiratory electron transport";"Protein methylation"
JAMg_model_12779.1	6	Reactome: R-HSA-6791226;Reactome: R-HSA-380994;Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-450604;Reactome: R-HSA-429958	"Major pathway of rRNA processing in the nucleolus and cytosol";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_6228.1	2	Reactome: R-HSA-6811434;Reactome: R-HSA-983189	"COPI-dependent Golgi-to-ER retrograde traffic";"Kinesins"
JAMg_model_20523.1	4	Reactome: R-HSA-2122947;Reactome: R-HSA-2894862;Reactome: R-HSA-2644606;Reactome: R-HSA-350054	"NOTCH1 Intracellular Domain Regulates Transcription";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Notch-HLH transcription pathway"
JAMg_model_10689.1	6	Reactome: R-HSA-450604;Reactome: R-HSA-429958;Reactome: R-HSA-6791226;Reactome: R-HSA-450513;Reactome: R-HSA-380994;Reactome: R-HSA-450385	"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease";"Major pathway of rRNA processing in the nucleolus and cytosol";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"ATF4 activates genes in response to endoplasmic reticulum stress";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA"
JAMg_model_21015.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_4222.1	7	Reactome: R-HSA-171306;Reactome: R-HSA-110329;Reactome: R-HSA-110331;Reactome: R-HSA-110330;Reactome: R-HSA-110328;Reactome: R-HSA-2559586;Reactome: R-HSA-1221632	"Packaging Of Telomere Ends";"Cleavage of the damaged pyrimidine";"Cleavage of the damaged purine";"Recognition and association of DNA glycosylase with site containing an affected purine";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"DNA Damage/Telomere Stress Induced Senescence";"Meiotic synapsis"
JAMg_model_13997.3	1	Reactome: R-HSA-380320	"Recruitment of NuMA to mitotic centrosomes"
JAMg_model_10213.1	8	Reactome: R-HSA-163754;Reactome: R-HSA-6791462;MetaCyc: PWY-1861;Reactome: R-HSA-6791055;Reactome: R-HSA-71336;KEGG: 00030+2.2.1.2;MetaCyc: PWY-5723;Reactome: R-HSA-8950505	"Insulin effects increased synthesis of Xylulose-5-Phosphate";"TALDO1 deficiency: failed conversion of Fru(6)P, E4P to SH7P, GA3P";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"TALDO1 deficiency: failed conversion of SH7P, GA3P to Fru(6)P, E4P";"Pentose phosphate pathway";"Pentose phosphate pathway";"Rubisco shunt";"Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation"
JAMg_model_4787.1	6	Reactome: R-HSA-9010553;Reactome: R-HSA-159236;Reactome: R-HSA-975957;Reactome: R-HSA-73856;Reactome: R-HSA-72187;Reactome: R-HSA-72163	"Regulation of expression of SLITs and ROBOs";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"RNA Polymerase II Transcription Termination";"mRNA 3'-end processing";"mRNA Splicing - Major Pathway"
JAMg_model_11685.2	2	MetaCyc: PWY-7221;KEGG: 00230+2.7.4.8	"Guanosine ribonucleotides de novo biosynthesis";"Purine metabolism"
JAMg_model_14563.2	1	Reactome: R-HSA-2428928	"IRS-related events triggered by IGF1R"
JAMg_model_11739.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_2904.3	3	Reactome: R-HSA-3899300;Reactome: R-HSA-3232118;Reactome: R-HSA-4090294	"SUMOylation of transcription cofactors";"SUMOylation of transcription factors";"SUMOylation of intracellular receptors"
JAMg_model_13054.11	3	MetaCyc: PWY-7174;MetaCyc: PWY-4361;KEGG: 00270+5.3.1.23	"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II";"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism"
JAMg_model_6042.5	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_6469.1	2	KEGG: 00970+6.1.1.20;Reactome: R-HSA-379716	"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_1190.1	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_3319.4	22	MetaCyc: PWY-7117;KEGG: 00960+2.6.1.1;KEGG: 00360+2.6.1.1;KEGG: 00220+2.6.1.1;MetaCyc: PWY-7115;MetaCyc: PWY-6638;KEGG: 00350+2.6.1.1;KEGG: 00950+2.6.1.1;MetaCyc: PWY-6642;Reactome: R-HSA-72163;KEGG: 00400+2.6.1.1;KEGG: 00710+2.6.1.1;KEGG: 00330+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00270+2.6.1.1;KEGG: 00401+2.6.1.1;KEGG: 00250+2.6.1.1;Reactome: R-HSA-159236;MetaCyc: PWY-6643;Reactome: R-HSA-72187;MetaCyc: PWY-7383;Reactome: R-HSA-73856	"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Tropane, piperidine and pyridine alkaloid biosynthesis";"Phenylalanine metabolism";"Arginine biosynthesis";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Sulfolactate degradation III";"Tyrosine metabolism";"Isoquinoline alkaloid biosynthesis";"(R)-cysteate degradation";"mRNA Splicing - Major Pathway";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Carbon fixation in photosynthetic organisms";"Arginine and proline metabolism";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism";"Novobiocin biosynthesis";"Alanine, aspartate and glutamate metabolism";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Coenzyme M biosynthesis II";"mRNA 3'-end processing";"Anaerobic energy metabolism (invertebrates, cytosol)";"RNA Polymerase II Transcription Termination"
JAMg_model_14505.2	2	Reactome: R-HSA-2022854;Reactome: R-HSA-975577	"Keratan sulfate biosynthesis";"N-Glycan antennae elongation"
JAMg_model_1489.1	2	KEGG: 00230+2.7.4.8;MetaCyc: PWY-7221	"Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis"
JAMg_model_1909.4	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_3430.6	1	Reactome: R-HSA-381038	"XBP1(S) activates chaperone genes"
JAMg_model_21258.2	8	KEGG: 00190+7.1.2.2;Reactome: R-HSA-983712;MetaCyc: PWY-7980;Reactome: R-HSA-1222556;Reactome: R-HSA-917977;Reactome: R-HSA-77387;KEGG: 00195+7.1.2.2;Reactome: R-HSA-9639288	"Oxidative phosphorylation";"Ion channel transport";"ATP biosynthesis";"ROS and RNS production in phagocytes";"Transferrin endocytosis and recycling";"Insulin receptor recycling";"Photosynthesis";"Amino acids regulate mTORC1"
JAMg_model_18817.1	10	KEGG: 00030+2.7.1.11;Reactome: R-HSA-70171;KEGG: 00051+2.7.1.11;KEGG: 00680+2.7.1.11;MetaCyc: PWY-1861;MetaCyc: PWY-1042;MetaCyc: PWY-5484;KEGG: 00010+2.7.1.11;KEGG: 00052+2.7.1.11;MetaCyc: PWY-7385	"Pentose phosphate pathway";"Glycolysis";"Fructose and mannose metabolism";"Methane metabolism";"Formaldehyde assimilation II (assimilatory RuMP Cycle)";"Glycolysis IV (plant cytosol)";"Glycolysis II (from fructose 6-phosphate)";"Glycolysis / Gluconeogenesis";"Galactose metabolism";"1,3-propanediol biosynthesis (engineered)"
JAMg_model_7638.5	2	Reactome: R-HSA-983189;Reactome: R-HSA-6811434	"Kinesins";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_4999.2	11	Reactome: R-HSA-674695;Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167200;Reactome: R-HSA-112382;Reactome: R-HSA-167152;Reactome: R-HSA-167287	"RNA Polymerase II Pre-transcription Events";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Formation of RNA Pol II elongation complex";"Formation of HIV elongation complex in the absence of HIV Tat";"HIV elongation arrest and recovery"
JAMg_model_15187.1	5	Reactome: R-HSA-75035;Reactome: R-HSA-1445148;Reactome: R-HSA-5628897;Reactome: R-HSA-111447;Reactome: R-HSA-5625740	"Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"TP53 Regulates Metabolic Genes";"Activation of BAD and translocation to mitochondria";"RHO GTPases activate PKNs"
JAMg_model_5079.1	13	MetaCyc: PWY-7822;KEGG: 00531+3.2.1.52;MetaCyc: PWY-6902;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52;Reactome: R-HSA-2160916;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7883;Reactome: R-HSA-1660662;KEGG: 00513+3.2.1.52;Reactome: R-HSA-2022857;Reactome: R-HSA-2024101	"Chitin degradation III (Serratia)";"Glycosaminoglycan degradation";"Chitin degradation II (Vibrio)";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Hyaluronan uptake and degradation";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation";"Anhydromuropeptides recycling II";"Glycosphingolipid metabolism";"Various types of N-glycan biosynthesis";"Keratan sulfate degradation";"CS/DS degradation"
JAMg_model_9194.6	6	MetaCyc: PWY-7234;KEGG: 00230+3.5.4.10+2.1.2.3;Reactome: R-HSA-73817;KEGG: 00670+2.1.2.3;MetaCyc: PWY-6124;MetaCyc: PWY-6123	"Inosine-5'-phosphate biosynthesis III";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"One carbon pool by folate";"Inosine-5'-phosphate biosynthesis II";"Inosine-5'-phosphate biosynthesis I"
JAMg_model_4443.1	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6807878;Reactome: R-HSA-6811440	"Intra-Golgi traffic";"COPI-mediated anterograde transport";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_12527.1	3	MetaCyc: PWY-4361;KEGG: 00270+1.13.11.54;Reactome: R-HSA-1237112	"S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I";"Cysteine and methionine metabolism";"Methionine salvage pathway"
JAMg_model_4972.3	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_14616.1	1	Reactome: R-HSA-1483255	"PI Metabolism"
JAMg_model_4480.1	6	Reactome: R-HSA-9609690;Reactome: R-HSA-9029569;Reactome: R-HSA-1989781;Reactome: R-HSA-9022692;Reactome: R-HSA-3214815;Reactome: R-HSA-9022537	"HCMV Early Events";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"PPARA activates gene expression";"Regulation of MECP2 expression and activity";"HDACs deacetylate histones";"Loss of MECP2 binding ability to the NCoR/SMRT complex"
JAMg_model_16618.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_2904.2	3	Reactome: R-HSA-3232118;Reactome: R-HSA-3899300;Reactome: R-HSA-4090294	"SUMOylation of transcription factors";"SUMOylation of transcription cofactors";"SUMOylation of intracellular receptors"
JAMg_model_5924.2	3	MetaCyc: PWY-7511;Reactome: R-HSA-349425;Reactome: R-HSA-8951664	"Protein ubiquitination";"Autodegradation of the E3 ubiquitin ligase COP1";"Neddylation"
JAMg_model_9895.6	10	MetaCyc: PWY-6527;KEGG: 00052+5.1.3.2;MetaCyc: PWY-3821;MetaCyc: PWY-6317;MetaCyc: PWY-7344;MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2;Reactome: R-HSA-5609977;MetaCyc: PWY-6397;Reactome: R-HSA-70370	"Stachyose degradation";"Galactose metabolism";"D-galactose detoxification";"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Galactose catabolism"
JAMg_model_21203.1	2	Reactome: R-HSA-6783984;KEGG: 00260+1.4.4.2	"Glycine degradation";"Glycine, serine and threonine metabolism"
JAMg_model_10797.1	1	Reactome: R-HSA-5676934	"Protein repair"
JAMg_model_19672.2	1	Reactome: R-HSA-429947	"Deadenylation of mRNA"
JAMg_model_546.1	4	Reactome: R-HSA-2408522;Reactome: R-HSA-379726;KEGG: 00970+6.1.1.18;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Mitochondrial tRNA aminoacylation";"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation"
JAMg_model_18050.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_21130.3	6	Reactome: R-HSA-9033241;Reactome: R-HSA-9615017;KEGG: 00630+1.11.1.6;Reactome: R-HSA-6798695;KEGG: 00380+1.11.1.6;Reactome: R-HSA-3299685	"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Glyoxylate and dicarboxylate metabolism";"Neutrophil degranulation";"Tryptophan metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_11401.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_17419.5	12	Reactome: R-HSA-380270;Reactome: R-HSA-381038;Reactome: R-HSA-380284;Reactome: R-HSA-3371497;Reactome: R-HSA-2565942;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-2132295;Reactome: R-HSA-6811436;Reactome: R-HSA-5620912;Reactome: R-HSA-6807878;Reactome: R-HSA-8854518	"Recruitment of mitotic centrosome proteins and complexes";"XBP1(S) activates chaperone genes";"Loss of proteins required for interphase microtubule organization from the centrosome";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Regulation of PLK1 Activity at G2/M Transition";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"MHC class II antigen presentation";"COPI-independent Golgi-to-ER retrograde traffic";"Anchoring of the basal body to the plasma membrane";"COPI-mediated anterograde transport";"AURKA Activation by TPX2"
JAMg_model_16972.1	9	Reactome: R-HSA-110330;Reactome: R-HSA-110331;Reactome: R-HSA-110329;Reactome: R-HSA-9657050;Reactome: R-HSA-9656256;Reactome: R-HSA-110328;Reactome: R-HSA-110357;Reactome: R-HSA-5649702;Reactome: R-HSA-9656255	"Recognition and association of DNA glycosylase with site containing an affected purine";"Cleavage of the damaged purine";"Cleavage of the damaged pyrimidine";"Defective OGG1 Localization";"Defective OGG1 Substrate Processing";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"Displacement of DNA glycosylase by APEX1";"APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway";"Defective OGG1 Substrate Binding"
JAMg_model_9184.4	6	MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107;MetaCyc: PWY-7817;KEGG: 04070+2.7.1.107;Reactome: R-HSA-114508;KEGG: 00561+2.7.1.107	"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism";"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidylinositol signaling system";"Effects of PIP2 hydrolysis";"Glycerolipid metabolism"
JAMg_model_1965.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_13588.3	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_583.10	1	Reactome: R-HSA-71384	"Ethanol oxidation"
JAMg_model_3614.1	4	KEGG: 00520+2.7.1.59;Reactome: R-HSA-446210;MetaCyc: PWY-6517;MetaCyc: PWY-6906	"Amino sugar and nucleotide sugar metabolism";"Synthesis of UDP-N-acetyl-glucosamine";"N-acetylglucosamine degradation II";"Chitin derivatives degradation"
JAMg_model_20497.1	2	Reactome: R-HSA-8853383;KEGG: 00511+3.2.1.24	"Lysosomal oligosaccharide catabolism";"Other glycan degradation"
JAMg_model_11694.3	11	Reactome: R-HSA-8940973;Reactome: R-HSA-8939236;Reactome: R-HSA-69231;Reactome: R-HSA-5693565;KEGG: 04660+2.7.10.2;Reactome: R-HSA-983231;Reactome: R-HSA-525793;Reactome: R-HSA-2029482;Reactome: R-HSA-5663213;Reactome: R-HSA-428890;Reactome: R-HSA-5685938	"RUNX2 regulates osteoblast differentiation";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Cyclin D associated events in G1";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"T cell receptor signaling pathway";"Factors involved in megakaryocyte development and platelet production";"Myogenesis";"Regulation of actin dynamics for phagocytic cup formation";"RHO GTPases Activate WASPs and WAVEs";"Role of ABL in ROBO-SLIT signaling";"HDR through Single Strand Annealing (SSA)"
JAMg_model_14841.1	31	MetaCyc: PWY-5989;MetaCyc: PWY-5147;Reactome: R-HSA-9029558;MetaCyc: PWY-5966-1;MetaCyc: PWY-7664;MetaCyc: PWY-5973;Reactome: R-HSA-75105;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-6113;MetaCyc: PWY-6282;MetaCyc: PWY-4381;Reactome: R-HSA-2426168;MetaCyc: PWY-6519;MetaCyc: PWY-8012;MetaCyc: PWY-6799;MetaCyc: PWYG-321;MetaCyc: PWY-5367;MetaCyc: PWY-7746;MetaCyc: PWY-5994;Reactome: R-HSA-199220;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWY-7388;MetaCyc: PWY-5366;MetaCyc: PWY-7663;MetaCyc: PWY-7723;MetaCyc: PWY-5971;MetaCyc: PWY-8049;MetaCyc: PWY-8047;MetaCyc: PWY-7858;Reactome: R-HSA-163765;MetaCyc: PWY-5142	"Stearate biosynthesis II (bacteria and plants)";"Oleate biosynthesis I (plants)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Oleate biosynthesis IV (anaerobic)";"Cis-vaccenate biosynthesis";"Fatty acyl-CoA biosynthesis";"Biotin metabolism";"Superpathway of mycolate biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Fatty acid biosynthesis initiation (bacteria and plants)";"Activation of gene expression by SREBF (SREBP)";"8-amino-7-oxononanoate biosynthesis I";"Mupirocin biosynthesis";"Fatty acid biosynthesis initiation (plant mitochondria)";"";"Petroselinate biosynthesis";"Mycobacterial sulfolipid biosynthesis";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Vitamin B5 (pantothenate) metabolism";"Fatty acid biosynthesis";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Palmitoleate biosynthesis II (plants and bacteria)";"Gondoate biosynthesis (anaerobic)";"Bacterial bioluminescence";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"Pederin biosynthesis";"Bryostatin biosynthesis";"(5Z)-dodecenoate biosynthesis II";"ChREBP activates metabolic gene expression";"Acyl-[acyl-carrier protein] thioesterase pathway"
JAMg_model_18117.5	12	MetaCyc: PWY-1187;MetaCyc: PWY-6936;KEGG: 00450+4.4.1.13;MetaCyc: PWY-6309;KEGG: 00380+2.6.1.7;MetaCyc: PWY-601;MetaCyc: PWY-6842;MetaCyc: PWY-7901;Reactome: R-HSA-71240;MetaCyc: PWY-801;MetaCyc: PWY-2821;KEGG: 00270+4.4.1.13	"Glucosinolate biosynthesis from homomethionine";"Seleno-amino acid biosynthesis (plants)";"Selenocompound metabolism";"L-tryptophan degradation XI (mammalian, via kynurenine)";"Tryptophan metabolism";"Glucosinolate biosynthesis from tryptophan";"Glutathione-mediated detoxification II";"Glucosinolate biosynthesis from tyrosine";"Tryptophan catabolism";"Homocysteine and cysteine interconversion";"Glucosinolate biosynthesis from phenylalanine";"Cysteine and methionine metabolism"
JAMg_model_859.2	1	Reactome: R-HSA-399956	"CRMPs in Sema3A signaling"
JAMg_model_6355.2	4	Reactome: R-HSA-400511;Reactome: R-HSA-422085;Reactome: R-HSA-381771;Reactome: R-HSA-1799339	"Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)";"Synthesis, secretion, and deacylation of Ghrelin";"Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)";"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_10342.2	2	Reactome: R-HSA-164843;Reactome: R-HSA-5693571	"2-LTR circle formation";"Nonhomologous End-Joining (NHEJ)"
JAMg_model_10328.4	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_8298.1	4	Reactome: R-HSA-1912420;Reactome: R-HSA-936837;Reactome: R-HSA-5578775;Reactome: R-HSA-418359	"Pre-NOTCH Processing in Golgi";"Ion transport by P-type ATPases";"Ion homeostasis";"Reduction of cytosolic Ca++ levels"
JAMg_model_6955.1	1	Reactome: R-HSA-912446	"Meiotic recombination"
JAMg_model_5921.1	6	Reactome: R-HSA-389957;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-5620922;Reactome: R-HSA-389960;Reactome: R-HSA-6814122	"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_17486.2	2	Reactome: R-HSA-1268020;Reactome: R-HSA-1362409	"Mitochondrial protein import";"Mitochondrial iron-sulfur cluster biogenesis"
JAMg_model_7189.8	12	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;Reactome: R-HSA-194840;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;Reactome: R-HSA-416476;Reactome: R-HSA-193648;KEGG: 04926+2.7.11.1;Reactome: R-HSA-418885;KEGG: 05163+2.7.11.1;Reactome: R-HSA-416482;KEGG: 05170+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Rho GTPase cycle";"Thermogenesis";"Human papillomavirus infection";"G alpha (q) signalling events";"NRAGE signals death through JNK";"Relaxin signaling pathway";"DCC mediated attractive signaling";"Human cytomegalovirus infection";"G alpha (12/13) signalling events";"Human immunodeficiency virus 1 infection"
JAMg_model_10124.3	6	KEGG: 00020+4.2.1.3;Reactome: R-HSA-71403;KEGG: 00290+4.2.1.33;Reactome: R-HSA-1268020;KEGG: 00720+4.2.1.3;KEGG: 00630+4.2.1.3	"Citrate cycle (TCA cycle)";"Citric acid cycle (TCA cycle)";"Valine, leucine and isoleucine biosynthesis";"Mitochondrial protein import";"Carbon fixation pathways in prokaryotes";"Glyoxylate and dicarboxylate metabolism"
JAMg_model_14307.1	6	MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463	"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis"
JAMg_model_21089.1	1	Reactome: R-HSA-390522	"Striated Muscle Contraction"
JAMg_model_4436.1	2	Reactome: R-HSA-983168;Reactome: R-HSA-6798695	"Antigen processing: Ubiquitination & Proteasome degradation";"Neutrophil degranulation"
JAMg_model_3322.1	56	Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-8939236;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-1169091;Reactome: R-HSA-5678895;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768	"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Activation of NF-kappaB in B cells";"Defective CFTR causes cystic fibrosis";"UCH proteinases";"FCERI mediated NF-kB activation";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD"
JAMg_model_16066.4	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_19053.1	7	KEGG: 00940+1.11.1.7;MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-7445;MetaCyc: PWY-5466;MetaCyc: PWY-5469;MetaCyc: PWY-6824	"Phenylpropanoid biosynthesis";"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation";"Matairesinol biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis"
JAMg_model_19265.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_17419.8	12	Reactome: R-HSA-381038;Reactome: R-HSA-380284;Reactome: R-HSA-380270;Reactome: R-HSA-3371497;Reactome: R-HSA-2565942;Reactome: R-HSA-6811436;Reactome: R-HSA-5620912;Reactome: R-HSA-2132295;Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-8854518;Reactome: R-HSA-6807878	"XBP1(S) activates chaperone genes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Recruitment of mitotic centrosome proteins and complexes";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Regulation of PLK1 Activity at G2/M Transition";"COPI-independent Golgi-to-ER retrograde traffic";"Anchoring of the basal body to the plasma membrane";"MHC class II antigen presentation";"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"AURKA Activation by TPX2";"COPI-mediated anterograde transport"
JAMg_model_9874.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_15223.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_7209.2	56	Reactome: R-HSA-180534;Reactome: R-HSA-8948751;Reactome: R-HSA-174184;Reactome: R-HSA-195253;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-350562;Reactome: R-HSA-5632684;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-5362768;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4641258;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-5610785;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813	"Vpu mediated degradation of CD4";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Degradation of beta-catenin by the destruction complex";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Regulation of ornithine decarboxylase (ODC)";"Hedgehog 'on' state";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Degradation of DVL";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"GLI3 is processed to GLI3R by the proteasome";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids"
JAMg_model_3086.3	14	Reactome: R-HSA-205043;Reactome: R-HSA-977225;Reactome: R-HSA-1251985;Reactome: R-HSA-9017802;Reactome: R-HSA-193692;Reactome: R-HSA-9013507;Reactome: R-HSA-2979096;Reactome: R-HSA-2894862;Reactome: R-HSA-3928665;Reactome: R-HSA-9013700;Reactome: R-HSA-2122948;Reactome: R-HSA-6798695;Reactome: R-HSA-2644606;Reactome: R-HSA-1474228	"NRIF signals cell death from the nucleus";"Amyloid fiber formation";"Nuclear signaling by ERBB4";"Noncanonical activation of NOTCH3";"Regulated proteolysis of p75NTR";"NOTCH3 Activation and Transmission of Signal to the Nucleus";"NOTCH2 Activation and Transmission of Signal to the Nucleus";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"EPH-ephrin mediated repulsion of cells";"NOTCH4 Activation and Transmission of Signal to the Nucleus";"Activated NOTCH1 Transmits Signal to the Nucleus";"Neutrophil degranulation";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Degradation of the extracellular matrix"
JAMg_model_11877.1	6	Reactome: R-HSA-189085;MetaCyc: PWY-622;MetaCyc: PWY-5067;MetaCyc: PWY-7900;KEGG: 00500+3.2.1.1;KEGG: 00500+2.4.1.18	"Digestion of dietary carbohydrate";"Starch biosynthesis";"Glycogen biosynthesis II (from UDP-D-Glucose)";"Glycogen biosynthesis III (from alpha-maltose 1-phosphate)";"Starch and sucrose metabolism";"Starch and sucrose metabolism"
JAMg_model_11748.1	3	Reactome: R-HSA-6811440;Reactome: R-HSA-6807878;Reactome: R-HSA-6811438	"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport";"Intra-Golgi traffic"
JAMg_model_1124.2	3	Reactome: R-HSA-6811438;Reactome: R-HSA-6811440;Reactome: R-HSA-6807878	"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network";"COPI-mediated anterograde transport"
JAMg_model_8008.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_10427.1	2	Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4128.1	2	Reactome: R-HSA-8866423;Reactome: R-HSA-8963888	"VLDL assembly";"Chylomicron assembly"
JAMg_model_12183.1	3	Reactome: R-HSA-5358493;MetaCyc: PWY-7546;MetaCyc: PWY-6482	"Synthesis of diphthamide-EEF2";"Diphthamide biosynthesis II (eukaryotes)";"Diphthamide biosynthesis I (archaea)"
JAMg_model_18210.5	5	MetaCyc: PWY-7560;MetaCyc: PWY-6891;MetaCyc: PWY-6892;KEGG: 00730+2.2.1.7;KEGG: 00900+2.2.1.7	"Methylerythritol phosphate pathway II";"Thiazole biosynthesis II (aerobic bacteria)";"Thiazole biosynthesis I (facultative anaerobic bacteria)";"Thiamine metabolism";"Terpenoid backbone biosynthesis"
JAMg_model_4874.4	1	Reactome: R-HSA-8873719	"RAB geranylgeranylation"
JAMg_model_1732.1	6	Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-156827;Reactome: R-HSA-72649;Reactome: R-HSA-72689	"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"L13a-mediated translational silencing of Ceruloplasmin expression";"Translation initiation complex formation";"Formation of a pool of free 40S subunits"
JAMg_model_12887.1	2	Reactome: R-HSA-8939243;Reactome: R-HSA-3214858	"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"RMTs methylate histone arginines"
JAMg_model_2748.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_6136.1	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_10955.1	1	Reactome: R-HSA-6798163	"Choline catabolism"
JAMg_model_18125.3	9	MetaCyc: PWY-7883;KEGG: 00513+3.2.1.52;KEGG: 00531+3.2.1.52;MetaCyc: PWY-6902;MetaCyc: PWY-7822;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52	"Anhydromuropeptides recycling II";"Various types of N-glycan biosynthesis";"Glycosaminoglycan degradation";"Chitin degradation II (Vibrio)";"Chitin degradation III (Serratia)";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation"
JAMg_model_17201.2	3	Reactome: R-HSA-5578775;Reactome: R-HSA-418359;Reactome: R-HSA-936837	"Ion homeostasis";"Reduction of cytosolic Ca++ levels";"Ion transport by P-type ATPases"
JAMg_model_9895.3	10	Reactome: R-HSA-70370;MetaCyc: PWY-6397;Reactome: R-HSA-5609977;KEGG: 00520+5.1.3.2;MetaCyc: PWY-7328;MetaCyc: PWY-7344;MetaCyc: PWY-6317;MetaCyc: PWY-3821;MetaCyc: PWY-6527;KEGG: 00052+5.1.3.2	"Galactose catabolism";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Amino sugar and nucleotide sugar metabolism";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"UDP-alpha-D-galactose biosynthesis";"D-galactose degradation I (Leloir pathway)";"D-galactose detoxification";"Stachyose degradation";"Galactose metabolism"
JAMg_model_12337.3	26	Reactome: R-HSA-1912408;Reactome: R-HSA-3899300;Reactome: R-HSA-8941856;Reactome: R-HSA-1234158;Reactome: R-HSA-201722;Reactome: R-HSA-933541;Reactome: R-HSA-210744;Reactome: R-HSA-9018519;Reactome: R-HSA-918233;Reactome: R-HSA-3371568;Reactome: R-HSA-5617472;Reactome: R-HSA-9614657;Reactome: R-HSA-2644606;Reactome: R-HSA-2894862;Reactome: R-HSA-8866907;Reactome: R-HSA-400253;Reactome: R-HSA-3214847;Reactome: R-HSA-381340;Reactome: R-HSA-9617629;Reactome: R-HSA-3134973;Reactome: R-HSA-5621575;Reactome: R-HSA-1989781;Reactome: R-HSA-9013508;Reactome: R-HSA-9013695;Reactome: R-HSA-1368082;Reactome: R-HSA-2122947	"Pre-NOTCH Transcription and Translation";"SUMOylation of transcription cofactors";"RUNX3 regulates NOTCH signaling";"Regulation of gene expression by Hypoxia-inducible Factor";"Formation of the beta-catenin:TCF transactivating complex";"TRAF6 mediated IRF7 activation";"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"Estrogen-dependent gene expression";"TRAF3-dependent IRF activation pathway";"Attenuation phase";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"FOXO-mediated transcription of cell death genes";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"Activation of the TFAP2 (AP-2) family of transcription factors";"Circadian Clock";"HATs acetylate histones";"Transcriptional regulation of white adipocyte differentiation";"Regulation of FOXO transcriptional activity by acetylation";"LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production";"CD209 (DC-SIGN) signaling";"PPARA activates gene expression";"NOTCH3 Intracellular Domain Regulates Transcription";"NOTCH4 Intracellular Domain Regulates Transcription";"RORA activates gene expression";"NOTCH1 Intracellular Domain Regulates Transcription"
JAMg_model_16462.1	2	Reactome: R-HSA-5693568;Reactome: R-HSA-6783310	"Resolution of D-loop Structures through Holliday Junction Intermediates";"Fanconi Anemia Pathway"
JAMg_model_8910.5	2	Reactome: R-HSA-379716;Reactome: R-HSA-2408522	"Cytosolic tRNA aminoacylation";"Selenoamino acid metabolism"
JAMg_model_5320.1	1	Reactome: R-HSA-211981	"Xenobiotics"
JAMg_model_19268.1	2	KEGG: 00340+2.1.1.22;Reactome: R-HSA-70921	"Histidine metabolism";"Histidine catabolism"
JAMg_model_16195.2	56	Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-1236974;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-174154;Reactome: R-HSA-187577;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-5687128;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-211733;Reactome: R-HSA-5668541;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-382556;Reactome: R-HSA-69481;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-1236978;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-174184;Reactome: R-HSA-180534;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5610785;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-4641258;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-9604323;Reactome: R-HSA-9010553;Reactome: R-HSA-4641257;Reactome: R-HSA-174084	"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"ER-Phagosome pathway";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"APC/C:Cdc20 mediated degradation of Securin";"SCF(Skp2)-mediated degradation of p27/p21";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"MAPK6/MAPK4 signaling";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"TNFR2 non-canonical NF-kB pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"ABC-family proteins mediated transport";"G2/M Checkpoints";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Vpu mediated degradation of CD4";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"UCH proteinases";"FCERI mediated NF-kB activation";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"GLI3 is processed to GLI3R by the proteasome";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Degradation of DVL";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Negative regulation of NOTCH4 signaling";"Regulation of expression of SLITs and ROBOs";"Degradation of AXIN";"Autodegradation of Cdh1 by Cdh1:APC/C"
JAMg_model_5555.2	7	MetaCyc: PWY-6351;Reactome: R-HSA-1660499;Reactome: R-HSA-1660514;KEGG: 04070+2.7.1.67;MetaCyc: PWY-6352;KEGG: 00562+2.7.1.67;Reactome: R-HSA-1660516	"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Synthesis of PIPs at the plasma membrane";"Synthesis of PIPs at the Golgi membrane";"Phosphatidylinositol signaling system";"3-phosphoinositide biosynthesis";"Inositol phosphate metabolism";"Synthesis of PIPs at the early endosome membrane"
JAMg_model_14808.1	1	Reactome: R-HSA-525793	"Myogenesis"
JAMg_model_20813.2	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_6732.1	56	Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-4641258;Reactome: R-HSA-450408;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-75815;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-8951664;Reactome: R-HSA-174178;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-5676590;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-9020702;Reactome: R-HSA-68949;Reactome: R-HSA-8941858;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-180534;Reactome: R-HSA-195253;Reactome: R-HSA-8948751;Reactome: R-HSA-174184	"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Degradation of DVL";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin-dependent degradation of Cyclin D";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Neddylation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"NIK-->noncanonical NF-kB signaling";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"Interleukin-1 signaling";"Orc1 removal from chromatin";"Regulation of RUNX3 expression and activity";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Vpu mediated degradation of CD4";"Degradation of beta-catenin by the destruction complex";"Regulation of PTEN stability and activity";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A"
JAMg_model_9249.1	1	Reactome: R-HSA-176974	"Unwinding of DNA"
JAMg_model_11500.1	1	Reactome: R-HSA-71403	"Citric acid cycle (TCA cycle)"
JAMg_model_1719.1	5	Reactome: R-HSA-983712;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-1222556;Reactome: R-HSA-9639288	"Ion channel transport";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"ROS and RNS production in phagocytes";"Amino acids regulate mTORC1"
JAMg_model_1274.3	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_17775.2	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_18905.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_5588.9	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_12196.1	1	Reactome: R-HSA-74217	"Purine salvage"
JAMg_model_19221.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_14518.5	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_10663.3	3	Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway"
JAMg_model_6185.1	15	Reactome: R-HSA-6804756;Reactome: R-HSA-2559586;Reactome: R-HSA-5693607;Reactome: R-HSA-5693579;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5685939;Reactome: R-HSA-5693571;Reactome: R-HSA-5693565;Reactome: R-HSA-69473;Reactome: R-HSA-5693616;Reactome: R-HSA-912446;Reactome: R-HSA-5685938;Reactome: R-HSA-5693554;Reactome: R-HSA-5693548	"Regulation of TP53 Activity through Phosphorylation";"DNA Damage/Telomere Stress Induced Senescence";"Processing of DNA double-strand break ends";"Homologous DNA Pairing and Strand Exchange";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"HDR through MMEJ (alt-NHEJ)";"Nonhomologous End-Joining (NHEJ)";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks";"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Meiotic recombination";"HDR through Single Strand Annealing (SSA)";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Sensing of DNA Double Strand Breaks"
JAMg_model_2447.1	1	Reactome: R-HSA-427975	"Proton/oligopeptide cotransporters"
JAMg_model_8116.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_2682.3	2	Reactome: R-HSA-399719;Reactome: R-HSA-190873	"Trafficking of AMPA receptors";"Gap junction degradation"
JAMg_model_15441.6	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_4161.1	3	KEGG: 00511+3.2.1.45;KEGG: 00600+3.2.1.45;Reactome: R-HSA-1660662	"Other glycan degradation";"Sphingolipid metabolism";"Glycosphingolipid metabolism"
JAMg_model_627.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_19081.1	2	KEGG: 00030+2.7.6.1;KEGG: 00230+2.7.6.1	"Pentose phosphate pathway";"Purine metabolism"
JAMg_model_6525.3	1	Reactome: R-HSA-435368	"Zinc efflux and compartmentalization by the SLC30 family"
JAMg_model_14928.1	1	Reactome: R-HSA-427975	"Proton/oligopeptide cotransporters"
JAMg_model_1643.3	1	Reactome: R-HSA-382556	"ABC-family proteins mediated transport"
JAMg_model_8439.1	5	Reactome: R-HSA-5696397;Reactome: R-HSA-110381;Reactome: R-HSA-6782210;Reactome: R-HSA-5685939;Reactome: R-HSA-5649702	"Gap-filling DNA repair synthesis and ligation in GG-NER";"Resolution of AP sites via the single-nucleotide replacement pathway";"Gap-filling DNA repair synthesis and ligation in TC-NER";"HDR through MMEJ (alt-NHEJ)";"APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway"
JAMg_model_10134.6	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_7416.2	1	Reactome: R-HSA-2468052	"Establishment of Sister Chromatid Cohesion"
JAMg_model_3961.2	3	KEGG: 00310+1.14.11.8;MetaCyc: PWY-6100;Reactome: R-HSA-71262	"Lysine degradation";"L-carnitine biosynthesis";"Carnitine synthesis"
JAMg_model_15441.7	1	KEGG: 00480+3.4.11.2	"Glutathione metabolism"
JAMg_model_19735.1	14	KEGG: 00591+3.1.1.4;MetaCyc: PWY-8053;Reactome: R-HSA-1482788;MetaCyc: PWY-7783;MetaCyc: PWY-8051;KEGG: 00592+3.1.1.4;Reactome: R-HSA-975634;KEGG: 00565+3.1.1.4;MetaCyc: PWY-7417;MetaCyc: PWY-7416;MetaCyc: PWY-6803;KEGG: 00590+3.1.1.4;MetaCyc: PWY-7409;KEGG: 00564+3.1.1.4+3.1.1.5	"Linoleic acid metabolism";"Anandamide biosynthesis II";"Acyl chain remodelling of PC";"Plasmalogen degradation";"Anandamide biosynthesis I";"alpha-Linolenic acid metabolism";"Retinoid metabolism and transport";"Ether lipid metabolism";"Phospholipid remodeling (phosphatidate, yeast)";"Phospholipid remodeling (phosphatidylcholine, yeast)";"Phosphatidylcholine acyl editing";"Arachidonic acid metabolism";"Phospholipid remodeling (phosphatidylethanolamine, yeast)";"Glycerophospholipid metabolism"
JAMg_model_8264.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_5112.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_4222.2	7	Reactome: R-HSA-110329;Reactome: R-HSA-110331;Reactome: R-HSA-171306;Reactome: R-HSA-110330;Reactome: R-HSA-1221632;Reactome: R-HSA-110328;Reactome: R-HSA-2559586	"Cleavage of the damaged pyrimidine";"Cleavage of the damaged purine";"Packaging Of Telomere Ends";"Recognition and association of DNA glycosylase with site containing an affected purine";"Meiotic synapsis";"Recognition and association of DNA glycosylase with site containing an affected pyrimidine";"DNA Damage/Telomere Stress Induced Senescence"
JAMg_model_10005.2	4	MetaCyc: PWY-7383;KEGG: 00473+5.1.1.1;MetaCyc: PWY-8040;MetaCyc: PWY-8072	"Anaerobic energy metabolism (invertebrates, cytosol)";"D-Alanine metabolism";"Ansatrienin biosynthesis";"Alanine racemization"
JAMg_model_8700.1	8	Reactome: R-HSA-5628897;Reactome: R-HSA-9639288;Reactome: R-HSA-165159;Reactome: R-HSA-8943724;Reactome: R-HSA-1632852;Reactome: R-HSA-166208;Reactome: R-HSA-380972;Reactome: R-HSA-6798695	"TP53 Regulates Metabolic Genes";"Amino acids regulate mTORC1";"mTOR signalling";"Regulation of PTEN gene transcription";"Macroautophagy";"mTORC1-mediated signalling";"Energy dependent regulation of mTOR by LKB1-AMPK";"Neutrophil degranulation"
JAMg_model_1571.4	3	Reactome: R-HSA-390471;Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Association of TriC/CCT with target proteins during biosynthesis";"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_1264.2	3	Reactome: R-HSA-1660517;Reactome: R-HSA-1660516;Reactome: R-HSA-1660514	"Synthesis of PIPs at the late endosome membrane";"Synthesis of PIPs at the early endosome membrane";"Synthesis of PIPs at the Golgi membrane"
JAMg_model_6193.1	1	Reactome: R-HSA-212300	"PRC2 methylates histones and DNA"
JAMg_model_7381.1	7	MetaCyc: PWY-5461;MetaCyc: PWY-7214;MetaCyc: PWY-7445;KEGG: 00940+1.11.1.7;MetaCyc: PWY-5469;MetaCyc: PWY-6824;MetaCyc: PWY-5466	"Betanidin degradation";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation";"Phenylpropanoid biosynthesis";"Sesamin biosynthesis";"Justicidin B biosynthesis";"Matairesinol biosynthesis"
JAMg_model_5771.1	14	Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-5620912;Reactome: R-HSA-2500257;Reactome: R-HSA-2467813;Reactome: R-HSA-8854518;Reactome: R-HSA-380270;Reactome: R-HSA-68877;Reactome: R-HSA-428890;Reactome: R-HSA-380284;Reactome: R-HSA-5663220;Reactome: R-HSA-2565942;Reactome: R-HSA-141444	"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"Anchoring of the basal body to the plasma membrane";"Resolution of Sister Chromatid Cohesion";"Separation of Sister Chromatids";"AURKA Activation by TPX2";"Recruitment of mitotic centrosome proteins and complexes";"Mitotic Prometaphase";"Role of ABL in ROBO-SLIT signaling";"Loss of proteins required for interphase microtubule organization from the centrosome";"RHO GTPases Activate Formins";"Regulation of PLK1 Activity at G2/M Transition";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal"
JAMg_model_11740.4	9	Reactome: R-HSA-68962;Reactome: R-HSA-113501;Reactome: R-HSA-69183;Reactome: R-HSA-174430;Reactome: R-HSA-6784531;Reactome: R-HSA-174411;Reactome: R-HSA-68952;Reactome: R-HSA-69166;Reactome: R-HSA-69091	"Activation of the pre-replicative complex";"Inhibition of replication initiation of damaged DNA by RB1/E2F1";"Processive synthesis on the lagging strand";"Telomere C-strand synthesis initiation";"tRNA processing in the nucleus";"Polymerase switching on the C-strand of the telomere";"DNA replication initiation";"Removal of the Flap Intermediate";"Polymerase switching"
JAMg_model_20124.1	1	Reactome: R-HSA-8876725	"Protein methylation"
JAMg_model_13581.1	2	Reactome: R-HSA-532668;Reactome: R-HSA-6798695	"N-glycan trimming in the ER and Calnexin/Calreticulin cycle";"Neutrophil degranulation"
JAMg_model_2514.1	1	Reactome: R-HSA-426486	"Small interfering RNA (siRNA) biogenesis"
JAMg_model_7156.1	4	Reactome: R-HSA-8951664;Reactome: R-HSA-6781823;Reactome: R-HSA-5696394;Reactome: R-HSA-8856825	"Neddylation";"Formation of TC-NER Pre-Incision Complex";"DNA Damage Recognition in GG-NER";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_9766.1	7	KEGG: 04070+3.1.4.11;MetaCyc: PWY-8052;MetaCyc: PWY-6351;MetaCyc: PWY-7039;KEGG: 00562+3.1.4.11;MetaCyc: PWY-6367;Reactome: R-HSA-1855204	"Phosphatidylinositol signaling system";"2-arachidonoylglycerol biosynthesis";"D-myo-inositol (1,4,5)-trisphosphate biosynthesis";"Phosphatidate metabolism, as a signaling molecule";"Inositol phosphate metabolism";"D-myo-inositol-5-phosphate metabolism";"Synthesis of IP3 and IP4 in the cytosol"
JAMg_model_6520.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_5921.3	6	Reactome: R-HSA-389957;Reactome: R-HSA-390471;Reactome: R-HSA-390450;Reactome: R-HSA-5620922;Reactome: R-HSA-389960;Reactome: R-HSA-6814122	"Prefoldin mediated transfer of substrate to CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Folding of actin by CCT/TriC";"BBSome-mediated cargo-targeting to cilium";"Formation of tubulin folding intermediates by CCT/TriC";"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding"
JAMg_model_19912.1	3	Reactome: R-HSA-5368286;Reactome: R-HSA-5419276;Reactome: R-HSA-5389840	"Mitochondrial translation initiation";"Mitochondrial translation termination";"Mitochondrial translation elongation"
JAMg_model_5668.1	1	Reactome: R-HSA-5625900	"RHO GTPases activate CIT"
JAMg_model_18372.1	3	Reactome: R-HSA-1650814;KEGG: 00330+1.14.11.2;MetaCyc: PWY-7894	"Collagen biosynthesis and modifying enzymes";"Arginine and proline metabolism";"Procollagen hydroxylation and glycosylation"
JAMg_model_19962.3	16	Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689	"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Viral mRNA Translation";"Peptide chain elongation";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits"
JAMg_model_13468.1	16	Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"Peptide chain elongation";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_7252.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_18891.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_10902.1	2	Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_19822.1	19	MetaCyc: PWY-6728;KEGG: 00620+1.1.1.37;KEGG: 00680+1.1.1.37;MetaCyc: PWY-7115;MetaCyc: PWY-5392;KEGG: 00630+1.1.1.37;MetaCyc: PWY-8086;MetaCyc: PWY-7383;MetaCyc: PWY-561;KEGG: 00020+1.1.1.37;MetaCyc: PWY-1622;KEGG: 00710+1.1.1.37;MetaCyc: PWY-5690;Reactome: R-HSA-70263;Reactome: R-HSA-71403;KEGG: 00720+1.1.1.37;KEGG: 00270+1.1.1.37;MetaCyc: PWY-6969;MetaCyc: PWY-5913	"Methylaspartate cycle";"Pyruvate metabolism";"Methane metabolism";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"Reductive TCA cycle II";"Glyoxylate and dicarboxylate metabolism";"(S)-lactate fermentation to propanoate, acetate and hydrogen";"Anaerobic energy metabolism (invertebrates, cytosol)";"Superpathway of glyoxylate cycle and fatty acid degradation";"Citrate cycle (TCA cycle)";"Formaldehyde assimilation I (serine pathway)";"Carbon fixation in photosynthetic organisms";"TCA cycle II (plants and fungi)";"Gluconeogenesis";"Citric acid cycle (TCA cycle)";"Carbon fixation pathways in prokaryotes";"Cysteine and methionine metabolism";"TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)";"Partial TCA cycle (obligate autotrophs)"
JAMg_model_19962.1	16	Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-975956;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_14105.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_19491.2	4	Reactome: R-HSA-947581;Reactome: R-HSA-1362409;KEGG: 00730+2.8.1.7;MetaCyc: PWY-7250	"Molybdenum cofactor biosynthesis";"Mitochondrial iron-sulfur cluster biogenesis";"Thiamine metabolism";"[2Fe-2S] iron-sulfur cluster biosynthesis"
JAMg_model_19712.1	2	KEGG: 00073+2.3.1.20;KEGG: 00561+2.3.1.20	"Cutin, suberine and wax biosynthesis";"Glycerolipid metabolism"
JAMg_model_10407.4	3	Reactome: R-HSA-8876198;Reactome: R-HSA-6811438;Reactome: R-HSA-6811440	"RAB GEFs exchange GTP for GDP on RABs";"Intra-Golgi traffic";"Retrograde transport at the Trans-Golgi-Network"
JAMg_model_16492.1	1	Reactome: R-HSA-2393930	"Phosphate bond hydrolysis by NUDT proteins"
JAMg_model_2454.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_16508.1	18	Reactome: R-HSA-69473;Reactome: R-HSA-5693616;MetaCyc: PWY-7511;Reactome: R-HSA-5693607;Reactome: R-HSA-5685942;Reactome: R-HSA-5693568;Reactome: R-HSA-5693571;Reactome: R-HSA-912446;Reactome: R-HSA-1221632;Reactome: R-HSA-3108214;Reactome: R-HSA-5685938;Reactome: R-HSA-8953750;Reactome: R-HSA-6796648;Reactome: R-HSA-5693554;Reactome: R-HSA-5689901;Reactome: R-HSA-6804756;Reactome: R-HSA-5693579;Reactome: R-HSA-5693565	"G2/M DNA damage checkpoint";"Presynaptic phase of homologous DNA pairing and strand exchange";"Protein ubiquitination";"Processing of DNA double-strand break ends";"HDR through Homologous Recombination (HRR)";"Resolution of D-loop Structures through Holliday Junction Intermediates";"Nonhomologous End-Joining (NHEJ)";"Meiotic recombination";"Meiotic synapsis";"SUMOylation of DNA damage response and repair proteins";"HDR through Single Strand Annealing (SSA)";"Transcriptional Regulation by E2F6";"TP53 Regulates Transcription of DNA Repair Genes";"Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)";"Metalloprotease DUBs";"Regulation of TP53 Activity through Phosphorylation";"Homologous DNA Pairing and Strand Exchange";"Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks"
JAMg_model_13505.1	2	KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_733.1	6	Reactome: R-HSA-68867;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-69052;Reactome: R-HSA-176187	"Assembly of the pre-replicative complex";"Unwinding of DNA";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Switching of origins to a post-replicative state";"Activation of ATR in response to replication stress"
JAMg_model_20032.1	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_14606.1	6	MetaCyc: PWY-7656;Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-6733;MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84	"Spodoptera littoralis pheromone biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis";"Sporopollenin precursors biosynthesis";"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis"
JAMg_model_3435.1	6	Reactome: R-HSA-6791226;Reactome: R-HSA-380994;Reactome: R-HSA-450513;Reactome: R-HSA-450385;Reactome: R-HSA-450604;Reactome: R-HSA-429958	"Major pathway of rRNA processing in the nucleolus and cytosol";"ATF4 activates genes in response to endoplasmic reticulum stress";"Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA";"Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA";"KSRP (KHSRP) binds and destabilizes mRNA";"mRNA decay by 3' to 5' exoribonuclease"
JAMg_model_1521.1	2	Reactome: R-HSA-8949613;Reactome: R-HSA-1268020	"Cristae formation";"Mitochondrial protein import"
JAMg_model_8124.4	3	Reactome: R-HSA-5389840;Reactome: R-HSA-5419276;Reactome: R-HSA-5368286	"Mitochondrial translation elongation";"Mitochondrial translation termination";"Mitochondrial translation initiation"
JAMg_model_8553.1	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_21325.3	1	Reactome: R-HSA-2024096	"HS-GAG degradation"
JAMg_model_12130.4	24	Reactome: R-HSA-6811436;Reactome: R-HSA-2500257;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-9648025;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-5617833;Reactome: R-HSA-8852276;Reactome: R-HSA-6807878;Reactome: R-HSA-2467813;Reactome: R-HSA-9609736;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609690;Reactome: R-HSA-68877;Reactome: R-HSA-983189;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-3371497;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220	"COPI-independent Golgi-to-ER retrograde traffic";"Resolution of Sister Chromatid Cohesion";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"EML4 and NUDC in mitotic spindle formation";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Cilium Assembly";"The role of GTSE1 in G2/M progression after G2 checkpoint";"COPI-mediated anterograde transport";"Separation of Sister Chromatids";"Assembly and cell surface presentation of NMDA receptors";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"HCMV Early Events";"Mitotic Prometaphase";"Kinesins";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Aggrephagy";"RHO GTPases Activate Formins"
JAMg_model_7998.4	2	Reactome: R-HSA-418457;Reactome: R-HSA-1296052	"cGMP effects";"Ca2+ activated K+ channels"
JAMg_model_11737.8	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_9184.6	6	MetaCyc: PWY-7817;MetaCyc: PWY-7039;KEGG: 00564+2.7.1.107;KEGG: 04070+2.7.1.107;KEGG: 00561+2.7.1.107;Reactome: R-HSA-114508	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Phosphatidate metabolism, as a signaling molecule";"Glycerophospholipid metabolism";"Phosphatidylinositol signaling system";"Glycerolipid metabolism";"Effects of PIP2 hydrolysis"
JAMg_model_19615.1	2	Reactome: R-HSA-2132295;Reactome: R-HSA-877300	"MHC class II antigen presentation";"Interferon gamma signaling"
JAMg_model_19209.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_11733.1	1	Reactome: R-HSA-425561	"Sodium/Calcium exchangers"
JAMg_model_8107.1	1	Reactome: R-HSA-8851805	"MET activates RAS signaling"
JAMg_model_2063.2	30	Reactome: R-HSA-427413;Reactome: R-HSA-167160;Reactome: R-HSA-73776;Reactome: R-HSA-5696400;Reactome: R-HSA-167161;Reactome: R-HSA-674695;Reactome: R-HSA-73772;Reactome: R-HSA-6782135;Reactome: R-HSA-6781827;Reactome: R-HSA-2564830;Reactome: R-HSA-112382;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-5696395;Reactome: R-HSA-6796648;Reactome: R-HSA-73762;Reactome: R-HSA-167246;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-6782210;Reactome: R-HSA-75955;Reactome: R-HSA-77075;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-72086;Reactome: R-HSA-6781823;Reactome: R-HSA-76042;Reactome: R-HSA-73863	"NoRC negatively regulates rRNA expression";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"RNA Polymerase II Promoter Escape";"Dual Incision in GG-NER";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events";"RNA Polymerase I Promoter Escape";"Dual incision in TC-NER";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Cytosolic iron-sulfur cluster assembly";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Formation of Incision Complex in GG-NER";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase I Transcription Initiation";"Tat-mediated elongation of the HIV-1 transcript";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Elongation";"RNA Pol II CTD phosphorylation and interaction with CE";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"mRNA Capping";"Formation of TC-NER Pre-Incision Complex";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase I Transcription Termination"
JAMg_model_4464.2	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5696394	"UCH proteinases";"DNA Damage Recognition in GG-NER"
JAMg_model_11575.2	1	Reactome: R-HSA-197264	"Nicotinamide salvaging"
JAMg_model_12222.1	2	Reactome: R-HSA-1566948;Reactome: R-HSA-2243919	"Elastic fibre formation";"Crosslinking of collagen fibrils"
JAMg_model_12473.1	2	Reactome: R-HSA-5696394;Reactome: R-HSA-5689603	"DNA Damage Recognition in GG-NER";"UCH proteinases"
JAMg_model_5945.1	2	Reactome: R-HSA-72163;Reactome: R-HSA-72165	"mRNA Splicing - Major Pathway";"mRNA Splicing - Minor Pathway"
JAMg_model_1770.1	2	Reactome: R-HSA-5576892;Reactome: R-HSA-5576893	"Phase 0 - rapid depolarisation";"Phase 2 - plateau phase"
JAMg_model_7186.2	18	MetaCyc: PWY-6642;KEGG: 00400+2.6.1.1;KEGG: 00710+2.6.1.1;KEGG: 00330+2.6.1.1;KEGG: 00350+2.6.1.1;KEGG: 00950+2.6.1.1;KEGG: 00360+2.6.1.1;KEGG: 00220+2.6.1.1;MetaCyc: PWY-6638;MetaCyc: PWY-7115;MetaCyc: PWY-7117;KEGG: 00960+2.6.1.1;MetaCyc: PWY-6643;MetaCyc: PWY-7383;KEGG: 00250+2.6.1.1;MetaCyc: PWY-5913;KEGG: 00270+2.6.1.1;KEGG: 00401+2.6.1.1	"(R)-cysteate degradation";"Phenylalanine, tyrosine and tryptophan biosynthesis";"Carbon fixation in photosynthetic organisms";"Arginine and proline metabolism";"Tyrosine metabolism";"Isoquinoline alkaloid biosynthesis";"Phenylalanine metabolism";"Arginine biosynthesis";"Sulfolactate degradation III";"C4 photosynthetic carbon assimilation cycle, NAD-ME type";"C4 photosynthetic carbon assimilation cycle, PEPCK type";"Tropane, piperidine and pyridine alkaloid biosynthesis";"Coenzyme M biosynthesis II";"Anaerobic energy metabolism (invertebrates, cytosol)";"Alanine, aspartate and glutamate metabolism";"Partial TCA cycle (obligate autotrophs)";"Cysteine and methionine metabolism";"Novobiocin biosynthesis"
JAMg_model_13226.2	3	KEGG: 00561+2.7.1.30;Reactome: R-HSA-75109;MetaCyc: PWY-4261	"Glycerolipid metabolism";"Triglyceride biosynthesis";"Glycerol degradation I"
JAMg_model_1709.1	3	Reactome: R-HSA-5655862;Reactome: R-HSA-110312;Reactome: R-HSA-5656121	"Translesion synthesis by POLK";"Translesion synthesis by REV1";"Translesion synthesis by POLI"
JAMg_model_4893.3	12	KEGG: 00230+6.3.3.1;MetaCyc: PWY-6122;KEGG: 00670+2.1.2.9;KEGG: 00970+2.1.2.9;Reactome: R-HSA-196780;KEGG: 00230+6.3.4.13;KEGG: 00230+2.1.2.2;MetaCyc: PWY-6277;MetaCyc: PWY-6121;KEGG: 00670+2.1.2.2;Reactome: R-HSA-73817;MetaCyc: PWY-6613	"Purine metabolism";"5-aminoimidazole ribonucleotide biosynthesis II";"One carbon pool by folate";"Aminoacyl-tRNA biosynthesis";"Biotin transport and metabolism";"Purine metabolism";"Purine metabolism";"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis I";"One carbon pool by folate";"Purine ribonucleoside monophosphate biosynthesis";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate"
JAMg_model_20343.1	3	Reactome: R-HSA-8963684;Reactome: R-HSA-156590;Reactome: R-HSA-204174	"Tyrosine catabolism";"Glutathione conjugation";"Regulation of pyruvate dehydrogenase (PDH) complex"
JAMg_model_19199.5	1	KEGG: 00970+6.1.1.3	"Aminoacyl-tRNA biosynthesis"
JAMg_model_6069.1	2	MetaCyc: PWY-7936;KEGG: 00901+2.7.1.222	"Psilocybin biosynthesis";"Indole alkaloid biosynthesis"
JAMg_model_3157.1	4	KEGG: 00450+2.9.1.2;KEGG: 00970+2.9.1.2;MetaCyc: PWY-6281;Reactome: R-HSA-2408557	"Selenocompound metabolism";"Aminoacyl-tRNA biosynthesis";"L-selenocysteine biosynthesis II (archaea and eukaryotes)";"Selenocysteine synthesis"
JAMg_model_4123.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_3692.1	7	KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04926+2.7.11.1;KEGG: 05170+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1	"mTOR signaling pathway";"PI3K-Akt signaling pathway";"Human cytomegalovirus infection";"Relaxin signaling pathway";"Human immunodeficiency virus 1 infection";"Thermogenesis";"Human papillomavirus infection"
JAMg_model_3077.1	33	Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-76042;Reactome: R-HSA-69202;Reactome: R-HSA-69231;Reactome: R-HSA-167162;Reactome: R-HSA-113418;Reactome: R-HSA-167158;Reactome: R-HSA-75955;Reactome: R-HSA-6782210;Reactome: R-HSA-75953;Reactome: R-HSA-73762;Reactome: R-HSA-6796648;Reactome: R-HSA-5696395;Reactome: R-HSA-167200;Reactome: R-HSA-69656;Reactome: R-HSA-6782135;Reactome: R-HSA-73772;Reactome: R-HSA-73776;Reactome: R-HSA-72086;Reactome: R-HSA-73863;Reactome: R-HSA-6781823;Reactome: R-HSA-8939236;Reactome: R-HSA-167172;Reactome: R-HSA-167246;Reactome: R-HSA-77075;Reactome: R-HSA-112382;Reactome: R-HSA-167160;Reactome: R-HSA-427413;Reactome: R-HSA-69273;Reactome: R-HSA-6781827;Reactome: R-HSA-674695;Reactome: R-HSA-167161	"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Cyclin E associated events during G1/S transition";"Cyclin D associated events in G1";"RNA Polymerase II HIV Promoter Escape";"Formation of the Early Elongation Complex";"Formation of the HIV-1 Early Elongation Complex";"RNA Polymerase II Transcription Elongation";"Gap-filling DNA repair synthesis and ligation in TC-NER";"RNA Polymerase II Transcription Initiation";"RNA Polymerase I Transcription Initiation";"TP53 Regulates Transcription of DNA Repair Genes";"Formation of Incision Complex in GG-NER";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Cyclin A:Cdk2-associated events at S phase entry";"Dual incision in TC-NER";"RNA Polymerase I Promoter Escape";"RNA Polymerase II Promoter Escape";"mRNA Capping";"RNA Polymerase I Transcription Termination";"Formation of TC-NER Pre-Incision Complex";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Transcription of the HIV genome";"Tat-mediated elongation of the HIV-1 transcript";"RNA Pol II CTD phosphorylation and interaction with CE";"Formation of RNA Pol II elongation complex";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"NoRC negatively regulates rRNA expression";"Cyclin A/B1/B2 associated events during G2/M transition";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation"
JAMg_model_17611.1	6	Reactome: R-HSA-5693616;Reactome: R-HSA-69473;Reactome: R-HSA-6804756;Reactome: R-HSA-5693607;Reactome: R-HSA-5685938;Reactome: R-HSA-176187	"Presynaptic phase of homologous DNA pairing and strand exchange";"G2/M DNA damage checkpoint";"Regulation of TP53 Activity through Phosphorylation";"Processing of DNA double-strand break ends";"HDR through Single Strand Annealing (SSA)";"Activation of ATR in response to replication stress"
JAMg_model_8013.1	6	Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220	"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins"
JAMg_model_20498.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_6074.1	3	Reactome: R-HSA-5419276;Reactome: R-HSA-5389840;Reactome: R-HSA-5368286	"Mitochondrial translation termination";"Mitochondrial translation elongation";"Mitochondrial translation initiation"
JAMg_model_20068.2	5	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-917729;Reactome: R-HSA-193648;Reactome: R-HSA-9610379	"Rho GTPase cycle";"G alpha (12/13) signalling events";"Endosomal Sorting Complex Required For Transport (ESCRT)";"NRAGE signals death through JNK";"HCMV Late Events"
JAMg_model_6579.1	3	Reactome: R-HSA-983189;Reactome: R-HSA-72163;Reactome: R-HSA-6811434	"Kinesins";"mRNA Splicing - Major Pathway";"COPI-dependent Golgi-to-ER retrograde traffic"
JAMg_model_450.2	1	Reactome: R-HSA-8964038	"LDL clearance"
JAMg_model_15875.3	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_10598.8	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5689880	"UCH proteinases";"Ub-specific processing proteases"
JAMg_model_20772.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_17518.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_13793.1	3	MetaCyc: PWY-7833;Reactome: R-HSA-9033807;MetaCyc: PWY-7831	"Biosynthesis of Lewis epitopes (H. pylori)";"ABO blood group biosynthesis";"ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide"
JAMg_model_16435.3	13	Reactome: R-HSA-72764;Reactome: R-HSA-9633012;Reactome: R-HSA-975957;Reactome: R-HSA-72689;Reactome: R-HSA-975956;Reactome: R-HSA-6791226;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-156827	"Eukaryotic Translation Termination";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_750.2	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_18296.1	7	MetaCyc: PWY-5941;Reactome: R-HSA-70221;MetaCyc: PWY-7238;Reactome: R-HSA-6798695;MetaCyc: PWY-6737;MetaCyc: PWY-6724;KEGG: 00500+2.4.1.25	"Glycogen degradation II";"Glycogen breakdown (glycogenolysis)";"Sucrose biosynthesis II";"Neutrophil degranulation";"Starch degradation V";"Starch degradation II";"Starch and sucrose metabolism"
JAMg_model_9300.1	2	Reactome: R-HSA-6804115;Reactome: R-HSA-429947	"TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain";"Deadenylation of mRNA"
JAMg_model_9948.2	3	Reactome: R-HSA-5663213;Reactome: R-HSA-2029482;Reactome: R-HSA-4420097	"RHO GTPases Activate WASPs and WAVEs";"Regulation of actin dynamics for phagocytic cup formation";"VEGFA-VEGFR2 Pathway"
JAMg_model_10811.2	1	Reactome: R-HSA-9033241	"Peroxisomal protein import"
JAMg_model_5073.1	2	Reactome: R-HSA-71403;Reactome: R-HSA-611105	"Citric acid cycle (TCA cycle)";"Respiratory electron transport"
JAMg_model_20391.2	4	KEGG: 00983+6.3.5.2;Reactome: R-HSA-73817;KEGG: 00230+6.3.5.2;MetaCyc: PWY-7221	"Drug metabolism - other enzymes";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Guanosine ribonucleotides de novo biosynthesis"
JAMg_model_17785.6	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_7597.1	8	Reactome: R-HSA-68689;Reactome: R-HSA-176187;Reactome: R-HSA-68867;Reactome: R-HSA-113507;Reactome: R-HSA-68616;Reactome: R-HSA-68827;Reactome: R-HSA-68962;Reactome: R-HSA-68949	"CDC6 association with the ORC:origin complex";"Activation of ATR in response to replication stress";"Assembly of the pre-replicative complex";"E2F-enabled inhibition of pre-replication complex formation";"Assembly of the ORC complex at the origin of replication";"CDT1 association with the CDC6:ORC:origin complex";"Activation of the pre-replicative complex";"Orc1 removal from chromatin"
JAMg_model_10411.1	1	Reactome: R-HSA-3000178	"ECM proteoglycans"
JAMg_model_15215.1	3	Reactome: R-HSA-2514859;MetaCyc: PWY-7800;MetaCyc: PWY-7799	"Inactivation, recovery and regulation of the phototransduction cascade";"Ac/N-end rule pathway";"Arg/N-end rule pathway (eukaryotic)"
JAMg_model_11736.2	4	KEGG: 00970+6.1.1.17;Reactome: R-HSA-379726;MetaCyc: PWY-5188;KEGG: 00860+6.1.1.17	"Aminoacyl-tRNA biosynthesis";"Mitochondrial tRNA aminoacylation";"Tetrapyrrole biosynthesis I (from glutamate)";"Porphyrin and chlorophyll metabolism"
JAMg_model_3411.4	1	Reactome: R-HSA-977347	"Serine biosynthesis"
JAMg_model_16816.4	1	Reactome: R-HSA-70895	"Branched-chain amino acid catabolism"
JAMg_model_15692.1	5	Reactome: R-HSA-191273;Reactome: R-HSA-2426168;KEGG: 00900+2.7.4.2;MetaCyc: PWY-922;MetaCyc: PWY-7391	"Cholesterol biosynthesis";"Activation of gene expression by SREBF (SREBP)";"Terpenoid backbone biosynthesis";"Mevalonate pathway I";"Isoprene biosynthesis II (engineered)"
JAMg_model_17090.1	19	Reactome: R-HSA-8964026;Reactome: R-HSA-8856828;Reactome: R-HSA-3000484;Reactome: R-HSA-3000471;Reactome: R-HSA-8856825;Reactome: R-HSA-202733;Reactome: R-HSA-8964038;Reactome: R-HSA-5686938;Reactome: R-HSA-8957275;Reactome: R-HSA-3000480;Reactome: R-HSA-8866423;Reactome: R-HSA-8963888;Reactome: R-HSA-432142;Reactome: R-HSA-381426;Reactome: R-HSA-975634;Reactome: R-HSA-8964046;Reactome: R-HSA-3000497;Reactome: R-HSA-8963901;Reactome: R-HSA-8964041	"Chylomicron clearance";"Clathrin-mediated endocytosis";"Scavenging by Class F Receptors";"Scavenging by Class B Receptors";"Cargo recognition for clathrin-mediated endocytosis";"Cell surface interactions at the vascular wall";"LDL clearance";"Regulation of TLR by endogenous ligand";"Post-translational protein phosphorylation";"Scavenging by Class A Receptors";"VLDL assembly";"Chylomicron assembly";"Platelet sensitization by LDL";"Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)";"Retinoid metabolism and transport";"VLDL clearance";"Scavenging by Class H Receptors";"Chylomicron remodeling";"LDL remodeling"
JAMg_model_4961.3	5	Reactome: R-HSA-182971;Reactome: R-HSA-8856825;Reactome: R-HSA-6807004;Reactome: R-HSA-8856828;Reactome: R-HSA-8875360	"EGFR downregulation";"Cargo recognition for clathrin-mediated endocytosis";"Negative regulation of MET activity";"Clathrin-mediated endocytosis";"InlB-mediated entry of Listeria monocytogenes into host cell"
JAMg_model_8317.1	2	Reactome: R-HSA-611105;Reactome: R-HSA-5628897	"Respiratory electron transport";"TP53 Regulates Metabolic Genes"
JAMg_model_14247.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_14840.1	1	Reactome: R-HSA-6790901	"rRNA modification in the nucleus and cytosol"
JAMg_model_10598.2	2	Reactome: R-HSA-5689880;Reactome: R-HSA-5689603	"Ub-specific processing proteases";"UCH proteinases"
JAMg_model_9987.1	4	Reactome: R-HSA-2500257;Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-2467813	"Resolution of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Separation of Sister Chromatids"
JAMg_model_247.1	1	Reactome: R-HSA-2142789	"Ubiquinol biosynthesis"
JAMg_model_6612.1	1	Reactome: R-HSA-5601884	"PIWI-interacting RNA (piRNA) biogenesis"
JAMg_model_11705.2	6	MetaCyc: PWY-6124;MetaCyc: PWY-6123;KEGG: 00230+6.3.2.6;Reactome: R-HSA-73817;KEGG: 00230+4.1.1.21;MetaCyc: PWY-7234	"Inosine-5'-phosphate biosynthesis II";"Inosine-5'-phosphate biosynthesis I";"Purine metabolism";"Purine ribonucleoside monophosphate biosynthesis";"Purine metabolism";"Inosine-5'-phosphate biosynthesis III"
JAMg_model_11904.8	2	MetaCyc: PWY-5386;KEGG: 00620+3.1.2.6	"Methylglyoxal degradation I";"Pyruvate metabolism"
JAMg_model_16282.1	16	Reactome: R-HSA-179409;Reactome: R-HSA-983168;Reactome: R-HSA-174154;Reactome: R-HSA-2467813;Reactome: R-HSA-176408;Reactome: R-HSA-8853884;Reactome: R-HSA-174178;Reactome: R-HSA-174084;Reactome: R-HSA-176407;Reactome: R-HSA-174048;Reactome: R-HSA-176409;Reactome: R-HSA-174184;Reactome: R-HSA-176412;Reactome: R-HSA-69017;Reactome: R-HSA-2559582;Reactome: R-HSA-141430	"APC-Cdc20 mediated degradation of Nek2A";"Antigen processing: Ubiquitination & Proteasome degradation";"APC/C:Cdc20 mediated degradation of Securin";"Separation of Sister Chromatids";"Regulation of APC/C activators between G1/S and early anaphase";"Transcriptional Regulation by VENTX";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Autodegradation of Cdh1 by Cdh1:APC/C";"Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase";"APC/C:Cdc20 mediated degradation of Cyclin B";"APC/C:Cdc20 mediated degradation of mitotic proteins";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Phosphorylation of the APC/C";"CDK-mediated phosphorylation and removal of Cdc6";"Senescence-Associated Secretory Phenotype (SASP)";"Inactivation of APC/C via direct inhibition of the APC/C complex"
JAMg_model_2684.1	3	MetaCyc: PWY-6689;MetaCyc: PWY-7803;Reactome: R-HSA-6784531	"Trna splicing I";"Trna splicing II";"tRNA processing in the nucleus"
JAMg_model_7374.2	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_8098.3	1	Reactome: R-HSA-163841	"Gamma carboxylation, hypusine formation and arylsulfatase activation"
JAMg_model_9047.4	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_6815.2	6	Reactome: R-HSA-2500257;Reactome: R-HSA-9648025;Reactome: R-HSA-68877;Reactome: R-HSA-141444;Reactome: R-HSA-2467813;Reactome: R-HSA-5663220	"Resolution of Sister Chromatid Cohesion";"EML4 and NUDC in mitotic spindle formation";"Mitotic Prometaphase";"Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal";"Separation of Sister Chromatids";"RHO GTPases Activate Formins"
JAMg_model_4893.1	12	MetaCyc: PWY-6277;MetaCyc: PWY-6121;KEGG: 00670+2.1.2.2;MetaCyc: PWY-6613;Reactome: R-HSA-73817;KEGG: 00670+2.1.2.9;KEGG: 00970+2.1.2.9;KEGG: 00230+6.3.3.1;MetaCyc: PWY-6122;KEGG: 00230+6.3.4.13;Reactome: R-HSA-196780;KEGG: 00230+2.1.2.2	"Superpathway of 5-aminoimidazole ribonucleotide biosynthesis";"5-aminoimidazole ribonucleotide biosynthesis I";"One carbon pool by folate";"Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate";"Purine ribonucleoside monophosphate biosynthesis";"One carbon pool by folate";"Aminoacyl-tRNA biosynthesis";"Purine metabolism";"5-aminoimidazole ribonucleotide biosynthesis II";"Purine metabolism";"Biotin transport and metabolism";"Purine metabolism"
JAMg_model_10118.1	1	Reactome: R-HSA-9022692	"Regulation of MECP2 expression and activity"
JAMg_model_1164.1	1	Reactome: R-HSA-8949664	"Processing of SMDT1"
JAMg_model_18918.9	3	MetaCyc: PWY-5386;KEGG: 00620+4.4.1.5;Reactome: R-HSA-70268	"Methylglyoxal degradation I";"Pyruvate metabolism";"Pyruvate metabolism"
JAMg_model_5374.1	1	Reactome: R-HSA-5626467	"RHO GTPases activate IQGAPs"
JAMg_model_12967.1	4	MetaCyc: PWY-6483;MetaCyc: PWY-7119;Reactome: R-HSA-1660662;KEGG: 00600+3.5.1.23	"Ceramide degradation (generic)";"Ceramide and sphingolipid recycling and degradation (yeast)";"Glycosphingolipid metabolism";"Sphingolipid metabolism"
JAMg_model_16858.4	1	Reactome: R-HSA-6803157	"Antimicrobial peptides"
JAMg_model_10024.2	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_4397.2	7	Reactome: R-HSA-380972;Reactome: R-HSA-9639288;Reactome: R-HSA-166208;Reactome: R-HSA-1632852;Reactome: R-HSA-8943724;Reactome: R-HSA-5628897;Reactome: R-HSA-165159	"Energy dependent regulation of mTOR by LKB1-AMPK";"Amino acids regulate mTORC1";"mTORC1-mediated signalling";"Macroautophagy";"Regulation of PTEN gene transcription";"TP53 Regulates Metabolic Genes";"mTOR signalling"
JAMg_model_8301.1	6	Reactome: R-HSA-9640463;MetaCyc: PWY-7782;MetaCyc: PWY-7656;KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733	"Wax biosynthesis";"Plasmalogen biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis"
JAMg_model_5775.1	1	Reactome: R-HSA-204005	"COPII-mediated vesicle transport"
JAMg_model_10598.1	2	Reactome: R-HSA-5689603;Reactome: R-HSA-5689880	"UCH proteinases";"Ub-specific processing proteases"
JAMg_model_13381.3	1	Reactome: R-HSA-9639288	"Amino acids regulate mTORC1"
JAMg_model_7362.5	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_19843.1	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_9200.6	3	Reactome: R-HSA-1989781;Reactome: R-HSA-381340;Reactome: R-HSA-212436	"PPARA activates gene expression";"Transcriptional regulation of white adipocyte differentiation";"Generic Transcription Pathway"
JAMg_model_7752.1	1	Reactome: R-HSA-1799339	"SRP-dependent cotranslational protein targeting to membrane"
JAMg_model_21356.1	9	Reactome: R-HSA-674695;Reactome: R-HSA-167161;Reactome: R-HSA-73776;Reactome: R-HSA-6804756;Reactome: R-HSA-167162;Reactome: R-HSA-167172;Reactome: R-HSA-76042;Reactome: R-HSA-73779;Reactome: R-HSA-75953	"RNA Polymerase II Pre-transcription Events";"HIV Transcription Initiation";"RNA Polymerase II Promoter Escape";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II HIV Promoter Escape";"Transcription of the HIV genome";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation"
JAMg_model_19300.1	3	Reactome: R-HSA-5696394;Reactome: R-HSA-5696395;Reactome: R-HSA-3108214	"DNA Damage Recognition in GG-NER";"Formation of Incision Complex in GG-NER";"SUMOylation of DNA damage response and repair proteins"
JAMg_model_19795.1	4	KEGG: 00670+1.5.1.6;KEGG: 00670+2.1.2.9;KEGG: 00970+2.1.2.9;Reactome: R-HSA-196757	"One carbon pool by folate";"One carbon pool by folate";"Aminoacyl-tRNA biosynthesis";"Metabolism of folate and pterines"
JAMg_model_6954.2	7	Reactome: R-HSA-212300;Reactome: R-HSA-9609690;Reactome: R-HSA-5617472;Reactome: R-HSA-8953750;Reactome: R-HSA-8943724;Reactome: R-HSA-3214841;Reactome: R-HSA-2559580	"PRC2 methylates histones and DNA";"HCMV Early Events";"Activation of anterior HOX genes in hindbrain development during early embryogenesis";"Transcriptional Regulation by E2F6";"Regulation of PTEN gene transcription";"PKMTs methylate histone lysines";"Oxidative Stress Induced Senescence"
JAMg_model_6625.2	4	Reactome: R-HSA-6790901;Reactome: R-HSA-156581;Reactome: R-HSA-6782315;Reactome: R-HSA-72764	"rRNA modification in the nucleus and cytosol";"Methylation";"tRNA modification in the nucleus and cytosol";"Eukaryotic Translation Termination"
JAMg_model_872.3	4	MetaCyc: PWY-7807;Reactome: R-HSA-71737;MetaCyc: PWY-7805;KEGG: 00190+3.6.1.1	"Glyphosate degradation III";"Pyrophosphate hydrolysis";"(aminomethyl)phosphonate degradation";"Oxidative phosphorylation"
JAMg_model_13503.3	1	Reactome: R-HSA-70221	"Glycogen breakdown (glycogenolysis)"
JAMg_model_14067.1	1	Reactome: R-HSA-425381	"Bicarbonate transporters"
JAMg_model_20269.1	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_1885.1	1	Reactome: R-HSA-6784531	"tRNA processing in the nucleus"
JAMg_model_20170.1	1	Reactome: R-HSA-983231	"Factors involved in megakaryocyte development and platelet production"
JAMg_model_3632.2	1	Reactome: R-HSA-432720	"Lysosome Vesicle Biogenesis"
JAMg_model_11403.3	6	Reactome: R-HSA-69052;Reactome: R-HSA-176187;Reactome: R-HSA-176974;Reactome: R-HSA-68962;Reactome: R-HSA-68949;Reactome: R-HSA-68867	"Switching of origins to a post-replicative state";"Activation of ATR in response to replication stress";"Unwinding of DNA";"Activation of the pre-replicative complex";"Orc1 removal from chromatin";"Assembly of the pre-replicative complex"
JAMg_model_20601.1	1	Reactome: R-HSA-72163	"mRNA Splicing - Major Pathway"
JAMg_model_19361.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_9291.1	16	Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72702;Reactome: R-HSA-6791226;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-975956;Reactome: R-HSA-975957;Reactome: R-HSA-72649;Reactome: R-HSA-9633012	"Viral mRNA Translation";"Peptide chain elongation";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Ribosomal scanning and start codon recognition";"Major pathway of rRNA processing in the nucleolus and cytosol";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Translation initiation complex formation";"Response of EIF2AK4 (GCN2) to amino acid deficiency"
JAMg_model_16024.1	4	Reactome: R-HSA-1614603;KEGG: 00270+4.2.1.22;MetaCyc: PWY-801;KEGG: 00260+4.2.1.22	"Cysteine formation from homocysteine";"Cysteine and methionine metabolism";"Homocysteine and cysteine interconversion";"Glycine, serine and threonine metabolism"
JAMg_model_3756.2	6	MetaCyc: PWY-7817;MetaCyc: PWY-5269;MetaCyc: PWY-5668;Reactome: R-HSA-1483148;KEGG: 00564+2.7.8.5;Reactome: R-HSA-1483166	"Type I lipoteichoic acid biosynthesis (S. aureus)";"Cardiolipin biosynthesis II";"Cardiolipin biosynthesis I";"Synthesis of PG";"Glycerophospholipid metabolism";"Synthesis of PA"
JAMg_model_7498.1	10	KEGG: 00650+2.3.3.10;MetaCyc: PWY-7391;MetaCyc: PWY-7524;MetaCyc: PWY-6174;MetaCyc: PWY-7571;KEGG: 00280+2.3.3.10;MetaCyc: PWY-922;KEGG: 00072+2.3.3.10;Reactome: R-HSA-1989781;KEGG: 00900+2.3.3.10	"Butanoate metabolism";"Isoprene biosynthesis II (engineered)";"Mevalonate pathway III (archaea)";"Mevalonate pathway II (archaea)";"Ferrichrome A biosynthesis";"Valine, leucine and isoleucine degradation";"Mevalonate pathway I";"Synthesis and degradation of ketone bodies";"PPARA activates gene expression";"Terpenoid backbone biosynthesis"
JAMg_model_18440.6	1	Reactome: R-HSA-3299685	"Detoxification of Reactive Oxygen Species"
JAMg_model_14105.2	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_9790.1	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_7039.1	3	Reactome: R-HSA-933542;Reactome: R-HSA-445989;Reactome: R-HSA-1810476	"TRAF6 mediated NF-kB activation";"TAK1 activates NFkB by phosphorylation and activation of IKKs complex";"RIP-mediated NFkB activation via ZBP1"
JAMg_model_12688.2	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_13588.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_17775.4	1	Reactome: R-HSA-3371453	"Regulation of HSF1-mediated heat shock response"
JAMg_model_18871.1	4	KEGG: 00513+2.4.1.257+2.4.1.132;KEGG: 00510+2.4.1.257+2.4.1.132;Reactome: R-HSA-446193;Reactome: R-HSA-4549349	"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis";"Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein";"Defective ALG2 causes ALG2-CDG (CDG-1i)"
JAMg_model_12117.2	2	Reactome: R-HSA-8876198;Reactome: R-HSA-204005	"RAB GEFs exchange GTP for GDP on RABs";"COPII-mediated vesicle transport"
JAMg_model_14338.4	5	Reactome: R-HSA-432720;Reactome: R-HSA-6798695;KEGG: 00531+3.1.6.14;Reactome: R-HSA-2206305;Reactome: R-HSA-2022857	"Lysosome Vesicle Biogenesis";"Neutrophil degranulation";"Glycosaminoglycan degradation";"MPS IIID - Sanfilippo syndrome D";"Keratan sulfate degradation"
JAMg_model_18830.1	10	KEGG: 00440+5.4.2.9;MetaCyc: PWY-5757;MetaCyc: PWY-7510;MetaCyc: PWY-6682;MetaCyc: PWY-6839;MetaCyc: PWY-7419;MetaCyc: PWY-6322;MetaCyc: PWY-8067;MetaCyc: PWY-7769;KEGG: 00998+5.4.2.9	"Phosphonate and phosphinate metabolism";"Fosfomycin biosynthesis";"Rhizocticin A and B biosynthesis";"Dehydrophos biosynthesis";"2-aminoethylphosphonate biosynthesis";"FR-900098 and FR-33289 antibiotics biosynthesis";"Phosphinothricin tripeptide biosynthesis";"Methylphosphonate biosynthesis";"Phosalacine biosynthesis";"Biosynthesis of various secondary metabolites - part 2"
JAMg_model_6138.1	2	MetaCyc: PWY-6502;Reactome: R-HSA-2393930	"8-oxo-(d)GTP detoxification I";"Phosphate bond hydrolysis by NUDT proteins"
JAMg_model_7346.1	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_20866.5	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_5614.1	7	Reactome: R-HSA-3371453;Reactome: R-HSA-983170;Reactome: R-HSA-381183;Reactome: R-HSA-381042;Reactome: R-HSA-114608;Reactome: R-HSA-381070;Reactome: R-HSA-381033	"Regulation of HSF1-mediated heat shock response";"Antigen Presentation: Folding, assembly and peptide loading of class I MHC";"ATF6 (ATF6-alpha) activates chaperone genes";"PERK regulates gene expression";"Platelet degranulation";"IRE1alpha activates chaperones";"ATF6 (ATF6-alpha) activates chaperones"
JAMg_model_4808.2	2	Reactome: R-HSA-5689880;Reactome: R-HSA-8949215	"Ub-specific processing proteases";"Mitochondrial calcium ion transport"
JAMg_model_2027.1	1	Reactome: R-HSA-6807505	"RNA polymerase II transcribes snRNA genes"
JAMg_model_4116.6	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_8589.1	7	Reactome: R-HSA-2565942;Reactome: R-HSA-8854518;Reactome: R-HSA-380259;Reactome: R-HSA-380320;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-5620912	"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2";"Loss of Nlp from mitotic centrosomes";"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane"
JAMg_model_19093.2	7	KEGG: 00970+6.1.1.17;Reactome: R-HSA-379716;KEGG: 00860+6.1.1.17;KEGG: 00970+6.1.1.15;Reactome: R-HSA-2408522;MetaCyc: PWY-5188;Reactome: R-HSA-6782315	"Aminoacyl-tRNA biosynthesis";"Cytosolic tRNA aminoacylation";"Porphyrin and chlorophyll metabolism";"Aminoacyl-tRNA biosynthesis";"Selenoamino acid metabolism";"Tetrapyrrole biosynthesis I (from glutamate)";"tRNA modification in the nucleus and cytosol"
JAMg_model_9592.1	13	Reactome: R-HSA-9633012;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-975957;Reactome: R-HSA-6791226;Reactome: R-HSA-975956;Reactome: R-HSA-72706;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-9010553;Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-156827	"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Major pathway of rRNA processing in the nucleolus and cytosol";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Peptide chain elongation";"Viral mRNA Translation";"Regulation of expression of SLITs and ROBOs";"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"L13a-mediated translational silencing of Ceruloplasmin expression"
JAMg_model_15193.2	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_11241.1	10	Reactome: R-HSA-499943;MetaCyc: PWY-7210;MetaCyc: PWY-7199;KEGG: 00240+2.1.1.45;MetaCyc: PWY-7198;MetaCyc: PWY-7187;Reactome: R-HSA-69205;MetaCyc: PWY-3841;KEGG: 00670+2.1.1.45;MetaCyc: PWY-7184	"Interconversion of nucleotide di- and triphosphates";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleosides salvage";"Pyrimidine metabolism";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Pyrimidine deoxyribonucleotides de novo biosynthesis II";"G1/S-Specific Transcription";"Folate transformations II (plants)";"One carbon pool by folate";"Pyrimidine deoxyribonucleotides de novo biosynthesis I"
JAMg_model_2896.1	5	Reactome: R-HSA-6814122;Reactome: R-HSA-389960;Reactome: R-HSA-390450;Reactome: R-HSA-390471;Reactome: R-HSA-389957	"Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding";"Formation of tubulin folding intermediates by CCT/TriC";"Folding of actin by CCT/TriC";"Association of TriC/CCT with target proteins during biosynthesis";"Prefoldin mediated transfer of substrate to CCT/TriC"
JAMg_model_21273.1	4	Reactome: R-HSA-1632852;Reactome: R-HSA-983168;Reactome: R-HSA-6798695;Reactome: R-HSA-6802952	"Macroautophagy";"Antigen processing: Ubiquitination & Proteasome degradation";"Neutrophil degranulation";"Signaling by BRAF and RAF fusions"
JAMg_model_5574.2	2	Reactome: R-HSA-5339700;Reactome: R-HSA-4641265	"TCF7L2 mutants don't bind CTBP";"Repression of WNT target genes"
JAMg_model_4999.1	11	Reactome: R-HSA-167287;Reactome: R-HSA-167152;Reactome: R-HSA-112382;Reactome: R-HSA-167200;Reactome: R-HSA-167238;Reactome: R-HSA-6796648;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167246;Reactome: R-HSA-75955;Reactome: R-HSA-674695	"HIV elongation arrest and recovery";"Formation of HIV elongation complex in the absence of HIV Tat";"Formation of RNA Pol II elongation complex";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Pausing and recovery of Tat-mediated HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"Tat-mediated elongation of the HIV-1 transcript";"RNA Polymerase II Transcription Elongation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_21130.2	6	Reactome: R-HSA-9033241;Reactome: R-HSA-9615017;Reactome: R-HSA-6798695;KEGG: 00630+1.11.1.6;Reactome: R-HSA-3299685;KEGG: 00380+1.11.1.6	"Peroxisomal protein import";"FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes";"Neutrophil degranulation";"Glyoxylate and dicarboxylate metabolism";"Detoxification of Reactive Oxygen Species";"Tryptophan metabolism"
JAMg_model_7345.1	1	Reactome: R-HSA-5620912	"Anchoring of the basal body to the plasma membrane"
JAMg_model_121.1	1	Reactome: R-HSA-156588	"Glucuronidation"
JAMg_model_5138.1	16	Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-72764;Reactome: R-HSA-72689;Reactome: R-HSA-192823;Reactome: R-HSA-156902	"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits";"Viral mRNA Translation";"Peptide chain elongation"
JAMg_model_14540.1	2	MetaCyc: PWY-6854;Reactome: R-HSA-3299685	"Ethylene biosynthesis III (microbes)";"Detoxification of Reactive Oxygen Species"
JAMg_model_8239.1	1	Reactome: R-HSA-83936	"Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane"
JAMg_model_1147.4	2	Reactome: R-HSA-418990;Reactome: R-HSA-5218920	"Adherens junctions interactions";"VEGFR2 mediated vascular permeability"
JAMg_model_18896.1	2	Reactome: R-HSA-196780;Reactome: R-HSA-3371599	"Biotin transport and metabolism";"Defective HLCS causes multiple carboxylase deficiency"
JAMg_model_17281.3	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_9797.3	1	Reactome: R-HSA-191273	"Cholesterol biosynthesis"
JAMg_model_15268.4	1	Reactome: R-HSA-983168	"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_16188.1	1	Reactome: R-HSA-9037629	"Lewis blood group biosynthesis"
JAMg_model_21342.1	1	Reactome: R-HSA-6791226	"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_2420.1	3	Reactome: R-HSA-72187;Reactome: R-HSA-73856;Reactome: R-HSA-159236	"mRNA 3'-end processing";"RNA Polymerase II Transcription Termination";"Transport of Mature mRNA derived from an Intron-Containing Transcript"
JAMg_model_1632.1	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_16905.1	3	KEGG: 05235+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 04658+3.1.3.16	"PD-L1 expression and PD-1 checkpoint pathway in cancer";"T cell receptor signaling pathway";"Th1 and Th2 cell differentiation"
JAMg_model_20788.1	9	Reactome: R-HSA-75953;Reactome: R-HSA-73779;Reactome: R-HSA-76042;Reactome: R-HSA-167172;Reactome: R-HSA-167162;Reactome: R-HSA-6804756;Reactome: R-HSA-73776;Reactome: R-HSA-167161;Reactome: R-HSA-674695	"RNA Polymerase II Transcription Initiation";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Transcription of the HIV genome";"RNA Polymerase II HIV Promoter Escape";"Regulation of TP53 Activity through Phosphorylation";"RNA Polymerase II Promoter Escape";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_20787.13	32	Reactome: R-HSA-72203;Reactome: R-HSA-73779;Reactome: R-HSA-167152;Reactome: R-HSA-6803529;Reactome: R-HSA-76042;Reactome: R-HSA-167158;Reactome: R-HSA-113418;Reactome: R-HSA-167162;Reactome: R-HSA-9018519;Reactome: R-HSA-75955;Reactome: R-HSA-167242;Reactome: R-HSA-75953;Reactome: R-HSA-167200;Reactome: R-HSA-6796648;Reactome: R-HSA-73776;Reactome: R-HSA-72086;Reactome: R-HSA-167238;Reactome: R-HSA-167172;Reactome: R-HSA-8851708;Reactome: R-HSA-72165;Reactome: R-HSA-167246;Reactome: R-HSA-77075;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-167290;Reactome: R-HSA-167243;Reactome: R-HSA-167160;Reactome: R-HSA-72163;Reactome: R-HSA-168325;Reactome: R-HSA-6807505;Reactome: R-HSA-167161;Reactome: R-HSA-674695	"Processing of Capped Intron-Containing Pre-mRNA";"RNA Polymerase II Transcription Pre-Initiation And Promoter Opening";"Formation of HIV elongation complex in the absence of HIV Tat";"FGFR2 alternative splicing";"RNA Polymerase II Transcription Initiation And Promoter Clearance";"Formation of the HIV-1 Early Elongation Complex";"Formation of the Early Elongation Complex";"RNA Polymerase II HIV Promoter Escape";"Estrogen-dependent gene expression";"RNA Polymerase II Transcription Elongation";"Abortive elongation of HIV-1 transcript in the absence of Tat";"RNA Polymerase II Transcription Initiation";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"TP53 Regulates Transcription of DNA Repair Genes";"RNA Polymerase II Promoter Escape";"mRNA Capping";"Pausing and recovery of Tat-mediated HIV elongation";"Transcription of the HIV genome";"Signaling by FGFR2 IIIa TM";"mRNA Splicing - Minor Pathway";"Tat-mediated elongation of the HIV-1 transcript";"RNA Pol II CTD phosphorylation and interaction with CE";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"Pausing and recovery of HIV elongation";"Tat-mediated HIV elongation arrest and recovery";"RNA Pol II CTD phosphorylation and interaction with CE during HIV infection";"mRNA Splicing - Major Pathway";"Viral Messenger RNA Synthesis";"RNA polymerase II transcribes snRNA genes";"HIV Transcription Initiation";"RNA Polymerase II Pre-transcription Events"
JAMg_model_2414.2	4	Reactome: R-HSA-2467813;Reactome: R-HSA-2500257;Reactome: R-HSA-2470946;Reactome: R-HSA-2468052	"Separation of Sister Chromatids";"Resolution of Sister Chromatid Cohesion";"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion"
JAMg_model_14171.2	5	Reactome: R-HSA-3656253;Reactome: R-HSA-2022928;KEGG: 00534+2.4.1.224+2.4.1.225;Reactome: R-HSA-3656237;MetaCyc: PWY-6558	"Defective EXT1 causes exostoses 1, TRPS2 and CHDS";"HS-GAG biosynthesis";"Glycosaminoglycan biosynthesis - heparan sulfate / heparin";"Defective EXT2 causes exostoses 2";"Heparan sulfate biosynthesis (late stages)"
JAMg_model_15557.2	5	MetaCyc: PWY-4983;Reactome: R-HSA-1222556;KEGG: 00330+1.14.13.39;KEGG: 00220+1.14.13.39;Reactome: R-HSA-392154	"Nitric oxide biosynthesis II (mammals)";"ROS and RNS production in phagocytes";"Arginine and proline metabolism";"Arginine biosynthesis";"Nitric oxide stimulates guanylate cyclase"
JAMg_model_9807.1	1	Reactome: R-HSA-5358493	"Synthesis of diphthamide-EEF2"
JAMg_model_12471.2	6	Reactome: R-HSA-72649;Reactome: R-HSA-72689;Reactome: R-HSA-72706;Reactome: R-HSA-156827;Reactome: R-HSA-72695;Reactome: R-HSA-72702	"Translation initiation complex formation";"Formation of a pool of free 40S subunits";"GTP hydrolysis and joining of the 60S ribosomal subunit";"L13a-mediated translational silencing of Ceruloplasmin expression";"Formation of the ternary complex, and subsequently, the 43S complex";"Ribosomal scanning and start codon recognition"
JAMg_model_16566.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_11949.1	6	MetaCyc: PWY-5884;KEGG: 00073+1.2.1.84;MetaCyc: PWY-6733;MetaCyc: PWY-7656;Reactome: R-HSA-9640463;MetaCyc: PWY-7782	"Wax esters biosynthesis I";"Cutin, suberine and wax biosynthesis";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Wax biosynthesis";"Plasmalogen biosynthesis"
JAMg_model_2821.1	6	Reactome: R-HSA-114508;Reactome: R-HSA-1489509;Reactome: R-HSA-2029485;KEGG: 04070+2.7.11.13;Reactome: R-HSA-1250196;Reactome: R-HSA-418597	"Effects of PIP2 hydrolysis";"DAG and IP3 signaling";"Role of phospholipids in phagocytosis";"Phosphatidylinositol signaling system";"SHC1 events in ERBB2 signaling";"G alpha (z) signalling events"
JAMg_model_15870.3	8	KEGG: 00521+2.7.1.1;KEGG: 00500+2.7.1.1;Reactome: R-HSA-70171;KEGG: 00520+2.7.1.1;KEGG: 00052+2.7.1.1;KEGG: 00051+2.7.1.1;KEGG: 00010+2.7.1.1;KEGG: 00524+2.7.1.1	"Streptomycin biosynthesis";"Starch and sucrose metabolism";"Glycolysis";"Amino sugar and nucleotide sugar metabolism";"Galactose metabolism";"Fructose and mannose metabolism";"Glycolysis / Gluconeogenesis";"Neomycin, kanamycin and gentamicin biosynthesis"
JAMg_model_17459.3	2	Reactome: R-HSA-5173214;Reactome: R-HSA-5083635	"O-glycosylation of TSR domain-containing proteins";"Defective B3GALTL causes Peters-plus syndrome (PpS)"
JAMg_model_16504.2	3	Reactome: R-HSA-196783;KEGG: 00770+2.7.1.33;MetaCyc: PWY-3961	"Coenzyme A biosynthesis";"Pantothenate and CoA biosynthesis";"Phosphopantothenate biosynthesis II"
JAMg_model_5615.2	9	Reactome: R-HSA-193648;Reactome: R-HSA-2871796;Reactome: R-HSA-194840;Reactome: R-HSA-114604;Reactome: R-HSA-5218920;Reactome: R-HSA-2871809;Reactome: R-HSA-4420097;Reactome: R-HSA-2029482;Reactome: R-HSA-416482	"NRAGE signals death through JNK";"FCERI mediated MAPK activation";"Rho GTPase cycle";"GPVI-mediated activation cascade";"VEGFR2 mediated vascular permeability";"FCERI mediated Ca+2 mobilization";"VEGFA-VEGFR2 Pathway";"Regulation of actin dynamics for phagocytic cup formation";"G alpha (12/13) signalling events"
JAMg_model_6601.3	1	Reactome: R-HSA-189200	"Cellular hexose transport"
JAMg_model_21252.1	1	Reactome: R-HSA-5620922	"BBSome-mediated cargo-targeting to cilium"
JAMg_model_19703.1	6	KEGG: 00073+1.2.1.84;MetaCyc: PWY-5884;MetaCyc: PWY-6733;MetaCyc: PWY-7656;MetaCyc: PWY-7782;Reactome: R-HSA-9640463	"Cutin, suberine and wax biosynthesis";"Wax esters biosynthesis I";"Sporopollenin precursors biosynthesis";"Spodoptera littoralis pheromone biosynthesis";"Plasmalogen biosynthesis";"Wax biosynthesis"
JAMg_model_7423.3	1	Reactome: R-HSA-6799198	"Complex I biogenesis"
JAMg_model_10973.1	1	Reactome: R-HSA-383280	"Nuclear Receptor transcription pathway"
JAMg_model_16203.1	2	Reactome: R-HSA-392154;Reactome: R-HSA-1222556	"Nitric oxide stimulates guanylate cyclase";"ROS and RNS production in phagocytes"
JAMg_model_13845.1	4	Reactome: R-HSA-2122947;Reactome: R-HSA-3769402;Reactome: R-HSA-4641265;Reactome: R-HSA-201722	"NOTCH1 Intracellular Domain Regulates Transcription";"Deactivation of the beta-catenin transactivating complex";"Repression of WNT target genes";"Formation of the beta-catenin:TCF transactivating complex"
JAMg_model_8515.2	1	Reactome: R-HSA-1296072	"Voltage gated Potassium channels"
JAMg_model_6844.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_6807.3	5	KEGG: 00290+4.2.1.33;KEGG: 00020+4.2.1.3;Reactome: R-HSA-917937;KEGG: 00720+4.2.1.3;KEGG: 00630+4.2.1.3	"Valine, leucine and isoleucine biosynthesis";"Citrate cycle (TCA cycle)";"Iron uptake and transport";"Carbon fixation pathways in prokaryotes";"Glyoxylate and dicarboxylate metabolism"
JAMg_model_9895.7	10	MetaCyc: PWY-6317;MetaCyc: PWY-7344;MetaCyc: PWY-3821;KEGG: 00052+5.1.3.2;MetaCyc: PWY-6527;Reactome: R-HSA-70370;MetaCyc: PWY-6397;Reactome: R-HSA-5609977;MetaCyc: PWY-7328;KEGG: 00520+5.1.3.2	"D-galactose degradation I (Leloir pathway)";"UDP-alpha-D-galactose biosynthesis";"D-galactose detoxification";"Galactose metabolism";"Stachyose degradation";"Galactose catabolism";"Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis";"Defective GALE can cause Epimerase-deficiency galactosemia (EDG)";"Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis";"Amino sugar and nucleotide sugar metabolism"
JAMg_model_18051.2	2	Reactome: R-HSA-5689880;Reactome: R-HSA-110320	"Ub-specific processing proteases";"Translesion Synthesis by POLH"
JAMg_model_7287.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-5628897	"Respiratory electron transport";"TP53 Regulates Metabolic Genes"
JAMg_model_2564.1	2	KEGG: 00770+2.7.1.24;MetaCyc: PWY-7851	"Pantothenate and CoA biosynthesis";"Coenzyme A biosynthesis II (eukaryotic)"
JAMg_model_15974.4	10	KEGG: 00710+2.7.2.3;MetaCyc: PWY-7003;Reactome: R-HSA-70171;Reactome: R-HSA-70263;MetaCyc: PWY-8004;MetaCyc: PWY-6886;KEGG: 00010+2.7.2.3;MetaCyc: PWY-5484;MetaCyc: PWY-6901;MetaCyc: PWY-1042	"Carbon fixation in photosynthetic organisms";"Glycerol degradation to butanol";"Glycolysis";"Gluconeogenesis";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)"
JAMg_model_19983.4	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_14649.2	1	Reactome: R-HSA-6798695	"Neutrophil degranulation"
JAMg_model_19299.1	24	Reactome: R-HSA-8955332;Reactome: R-HSA-6811434;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-9619483;Reactome: R-HSA-437239;Reactome: R-HSA-9609736;Reactome: R-HSA-983189;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840	"Carboxyterminal post-translational modifications of tubulin";"COPI-dependent Golgi-to-ER retrograde traffic";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Mitotic Prometaphase";"HCMV Early Events";"Activation of AMPK downstream of NMDARs";"Recycling pathway of L1";"Assembly and cell surface presentation of NMDA receptors";"Kinesins";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane"
JAMg_model_9200.4	3	Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway"
JAMg_model_18681.3	1	KEGG: 00230+4.6.1.2	"Purine metabolism"
JAMg_model_18133.3	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_10234.1	2	MetaCyc: PWY-7511;Reactome: R-HSA-983168	"Protein ubiquitination";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_4976.1	7	MetaCyc: PWY-6824;MetaCyc: PWY-5469;MetaCyc: PWY-5466;MetaCyc: PWY-7214;MetaCyc: PWY-7445;MetaCyc: PWY-5461;KEGG: 00940+1.11.1.7	"Justicidin B biosynthesis";"Sesamin biosynthesis";"Matairesinol biosynthesis";"Baicalein degradation (hydrogen peroxide detoxification)";"Luteolin triglucuronide degradation";"Betanidin degradation";"Phenylpropanoid biosynthesis"
JAMg_model_9920.2	1	KEGG: 04660+2.7.10.2	"T cell receptor signaling pathway"
JAMg_model_12221.1	1	Reactome: R-HSA-5610787	"Hedgehog 'off' state"
JAMg_model_17550.3	8	Reactome: R-HSA-8948747;Reactome: R-HSA-6781823;Reactome: R-HSA-5689880;Reactome: R-HSA-6804757;Reactome: R-HSA-6781827;Reactome: R-HSA-6782135;Reactome: R-HSA-8866652;Reactome: R-HSA-6782210	"Regulation of PTEN localization";"Formation of TC-NER Pre-Incision Complex";"Ub-specific processing proteases";"Regulation of TP53 Degradation";"Transcription-Coupled Nucleotide Excision Repair (TC-NER)";"Dual incision in TC-NER";"Synthesis of active ubiquitin: roles of E1 and E2 enzymes";"Gap-filling DNA repair synthesis and ligation in TC-NER"
JAMg_model_19907.1	2	Reactome: R-HSA-5576893;Reactome: R-HSA-5576892	"Phase 2 - plateau phase";"Phase 0 - rapid depolarisation"
JAMg_model_17924.1	2	Reactome: R-HSA-6791226;Reactome: R-HSA-6790901	"Major pathway of rRNA processing in the nucleolus and cytosol";"rRNA modification in the nucleus and cytosol"
JAMg_model_1943.1	2	KEGG: 00480+1.11.1.15;Reactome: R-HSA-3299685	"Glutathione metabolism";"Detoxification of Reactive Oxygen Species"
JAMg_model_17488.3	1	Reactome: R-HSA-611105	"Respiratory electron transport"
JAMg_model_14765.2	3	Reactome: R-HSA-2995383;Reactome: R-HSA-4419969;Reactome: R-HSA-2980766	"Initiation of Nuclear Envelope Reformation";"Depolymerisation of the Nuclear Lamina";"Nuclear Envelope Breakdown"
JAMg_model_14841.2	31	MetaCyc: PWY-5147;MetaCyc: PWY-5989;Reactome: R-HSA-9029558;MetaCyc: PWY-7664;MetaCyc: PWY-5966-1;Reactome: R-HSA-75105;MetaCyc: PWY-5973;KEGG: 00780+1.1.1.100+4.2.1.59+2.3.1.41;MetaCyc: PWY-4381;MetaCyc: PWY-6113;MetaCyc: PWY-6282;MetaCyc: PWY-6799;MetaCyc: PWY-6519;MetaCyc: PWY-8012;Reactome: R-HSA-2426168;MetaCyc: PWYG-321;MetaCyc: PWY-7746;MetaCyc: PWY-5367;MetaCyc: PWY-5994;Reactome: R-HSA-199220;MetaCyc: PWY-7388;MetaCyc: PWY-5366;MetaCyc: PWY-7723;MetaCyc: PWY-7663;KEGG: 00061+1.1.1.100+2.3.1.85+4.2.1.59+2.3.1.39+2.3.1.41+3.1.2.14;MetaCyc: PWY-5971;MetaCyc: PWY-7858;MetaCyc: PWY-8047;MetaCyc: PWY-8049;MetaCyc: PWY-5142;Reactome: R-HSA-163765	"Oleate biosynthesis I (plants)";"Stearate biosynthesis II (bacteria and plants)";"NR1H2 & NR1H3 regulate gene expression linked to lipogenesis";"Oleate biosynthesis IV (anaerobic)";"Fatty acid biosynthesis initiation (animals and fungi, cytoplasm)";"Fatty acyl-CoA biosynthesis";"Cis-vaccenate biosynthesis";"Biotin metabolism";"Fatty acid biosynthesis initiation (bacteria and plants)";"Superpathway of mycolate biosynthesis";"Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)";"Fatty acid biosynthesis initiation (plant mitochondria)";"8-amino-7-oxononanoate biosynthesis I";"Mupirocin biosynthesis";"Activation of gene expression by SREBF (SREBP)";"";"Mycobacterial sulfolipid biosynthesis";"Petroselinate biosynthesis";"Palmitate biosynthesis (animals and fungi, cytoplasm)";"Vitamin B5 (pantothenate) metabolism";"Octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)";"Palmitoleate biosynthesis II (plants and bacteria)";"Bacterial bioluminescence";"Gondoate biosynthesis (anaerobic)";"Fatty acid biosynthesis";"Palmitate biosynthesis II (bacteria and plant cytoplasm)";"(5Z)-dodecenoate biosynthesis II";"Bryostatin biosynthesis";"Pederin biosynthesis";"Acyl-[acyl-carrier protein] thioesterase pathway";"ChREBP activates metabolic gene expression"
JAMg_model_4160.1	4	Reactome: R-HSA-8951664;Reactome: R-HSA-6781823;Reactome: R-HSA-5696394;Reactome: R-HSA-8856825	"Neddylation";"Formation of TC-NER Pre-Incision Complex";"DNA Damage Recognition in GG-NER";"Cargo recognition for clathrin-mediated endocytosis"
JAMg_model_216.2	1	Reactome: R-HSA-162710	"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_12887.2	2	Reactome: R-HSA-3214858;Reactome: R-HSA-8939243	"RMTs methylate histone arginines";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known"
JAMg_model_13732.2	15	Reactome: R-HSA-2559585;Reactome: R-HSA-8853884;Reactome: R-HSA-9018519;Reactome: R-HSA-8943723;Reactome: R-HSA-8986944;Reactome: R-HSA-2559580;Reactome: R-HSA-9022692;Reactome: R-HSA-5687128;Reactome: R-HSA-5628897;Reactome: R-HSA-8948700;Reactome: R-HSA-9029569;Reactome: R-HSA-8936459;Reactome: R-HSA-4086398;Reactome: R-HSA-1912408;Reactome: R-HSA-8934593	"Oncogene Induced Senescence";"Transcriptional Regulation by VENTX";"Estrogen-dependent gene expression";"Regulation of PTEN mRNA translation";"Transcriptional Regulation by MECP2";"Oxidative Stress Induced Senescence";"Regulation of MECP2 expression and activity";"MAPK6/MAPK4 signaling";"TP53 Regulates Metabolic Genes";"Competing endogenous RNAs (ceRNAs) regulate PTEN translation";"NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux";"RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function";"Ca2+ pathway";"Pre-NOTCH Transcription and Translation";"Regulation of RUNX1 Expression and Activity"
JAMg_model_18566.1	2	KEGG: 00901+2.7.1.222;MetaCyc: PWY-7936	"Indole alkaloid biosynthesis";"Psilocybin biosynthesis"
JAMg_model_11842.1	17	Reactome: R-HSA-156827;Reactome: R-HSA-9010553;Reactome: R-HSA-2408557;Reactome: R-HSA-1799339;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-6790901;Reactome: R-HSA-9633012;Reactome: R-HSA-975956;Reactome: R-HSA-192823;Reactome: R-HSA-156902;Reactome: R-HSA-72689;Reactome: R-HSA-72764;Reactome: R-HSA-72695;Reactome: R-HSA-72706;Reactome: R-HSA-6791226;Reactome: R-HSA-72702	"L13a-mediated translational silencing of Ceruloplasmin expression";"Regulation of expression of SLITs and ROBOs";"Selenocysteine synthesis";"SRP-dependent cotranslational protein targeting to membrane";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"rRNA modification in the nucleus and cytosol";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Viral mRNA Translation";"Peptide chain elongation";"Formation of a pool of free 40S subunits";"Eukaryotic Translation Termination";"Formation of the ternary complex, and subsequently, the 43S complex";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition"
JAMg_model_515.1	1	Reactome: R-HSA-194840	"Rho GTPase cycle"
JAMg_model_3548.1	5	Reactome: R-HSA-6790901;KEGG: 00860+2.5.1.141;Reactome: R-HSA-189451;MetaCyc: PWY-7856;Reactome: R-HSA-6791226	"rRNA modification in the nucleus and cytosol";"Porphyrin and chlorophyll metabolism";"Heme biosynthesis";"Heme a biosynthesis";"Major pathway of rRNA processing in the nucleolus and cytosol"
JAMg_model_9667.1	13	MetaCyc: PWY-7222;MetaCyc: PWY-7184;KEGG: 00480+1.17.4.1;MetaCyc: PWY-7226;MetaCyc: PWY-7227;KEGG: 00230+1.17.4.1;KEGG: 00983+1.17.4.1;MetaCyc: PWY-7198;MetaCyc: PWY-7220;MetaCyc: PWY-7210;MetaCyc: PWY-6545;Reactome: R-HSA-499943;KEGG: 00240+1.17.4.1	"Guanosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides de novo biosynthesis I";"Glutathione metabolism";"Guanosine deoxyribonucleotides de novo biosynthesis I";"Adenosine deoxyribonucleotides de novo biosynthesis";"Purine metabolism";"Drug metabolism - other enzymes";"Pyrimidine deoxyribonucleotides de novo biosynthesis IV";"Adenosine deoxyribonucleotides de novo biosynthesis II";"Pyrimidine deoxyribonucleotides biosynthesis from CTP";"Pyrimidine deoxyribonucleotides de novo biosynthesis III";"Interconversion of nucleotide di- and triphosphates";"Pyrimidine metabolism"
JAMg_model_970.1	7	Reactome: R-HSA-5635838;Reactome: R-HSA-5658034;Reactome: R-HSA-5632684;Reactome: R-HSA-5362798;Reactome: R-HSA-5632681;Reactome: R-HSA-5358346;Reactome: R-HSA-373080	"Activation of SMO";"HHAT G278V abrogates palmitoylation of Hh-Np";"Hedgehog 'on' state";"Release of Hh-Np from the secreting cell";"Ligand-receptor interactions";"Hedgehog ligand biogenesis";"Class B/2 (Secretin family receptors)"
JAMg_model_19054.1	3	Reactome: R-HSA-381340;Reactome: R-HSA-1989781;Reactome: R-HSA-212436	"Transcriptional regulation of white adipocyte differentiation";"PPARA activates gene expression";"Generic Transcription Pathway"
JAMg_model_5067.1	1	Reactome: R-HSA-8949613	"Cristae formation"
JAMg_model_6935.1	3	KEGG: 04658+3.1.3.16;KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16	"Th1 and Th2 cell differentiation";"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer"
JAMg_model_1706.1	3	Reactome: R-HSA-5655862;Reactome: R-HSA-110312;Reactome: R-HSA-5656121	"Translesion synthesis by POLK";"Translesion synthesis by REV1";"Translesion synthesis by POLI"
JAMg_model_4800.1	27	Reactome: R-HSA-1169408;Reactome: R-HSA-3371453;Reactome: R-HSA-159230;Reactome: R-HSA-5619107;Reactome: R-HSA-9609690;Reactome: R-HSA-4615885;Reactome: R-HSA-3108214;Reactome: R-HSA-168333;Reactome: R-HSA-180746;Reactome: R-HSA-168325;Reactome: R-HSA-9610379;Reactome: R-HSA-180910;Reactome: R-HSA-3232142;Reactome: R-HSA-191859;Reactome: R-HSA-165054;Reactome: R-HSA-5578749;Reactome: R-HSA-4570464;Reactome: R-HSA-4551638;Reactome: R-HSA-4085377;Reactome: R-HSA-159236;Reactome: R-HSA-170822;Reactome: R-HSA-168276;Reactome: R-HSA-159227;Reactome: R-HSA-168271;Reactome: R-HSA-6784531;Reactome: R-HSA-3301854;Reactome: R-HSA-159231	"ISG15 antiviral mechanism";"Regulation of HSF1-mediated heat shock response";"Transport of the SLBP Dependant Mature mRNA";"Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)";"HCMV Early Events";"SUMOylation of DNA replication proteins";"SUMOylation of DNA damage response and repair proteins";"NEP/NS2 Interacts with the Cellular Export Machinery";"Nuclear import of Rev protein";"Viral Messenger RNA Synthesis";"HCMV Late Events";"Vpr-mediated nuclear import of PICs";"SUMOylation of ubiquitinylation proteins";"snRNP Assembly";"Rev-mediated nuclear export of HIV RNA";"Transcriptional regulation by small RNAs";"SUMOylation of RNA binding proteins";"SUMOylation of chromatin organization proteins";"SUMOylation of SUMOylation proteins";"Transport of Mature mRNA derived from an Intron-Containing Transcript";"Regulation of Glucokinase by Glucokinase Regulatory Protein";"NS1 Mediated Effects on Host Pathways";"Transport of the SLBP independent Mature mRNA";"Transport of Ribonucleoproteins into the Host Nucleus";"tRNA processing in the nucleus";"Nuclear Pore Complex (NPC) Disassembly";"Transport of Mature mRNA Derived from an Intronless Transcript"
JAMg_model_3074.1	2	Reactome: R-HSA-6803205;Reactome: R-HSA-8873719	"TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain";"RAB geranylgeranylation"
JAMg_model_21165.1	7	Reactome: R-HSA-2467813;Reactome: R-HSA-2470946;Reactome: R-HSA-2468052;Reactome: R-HSA-1221632;Reactome: R-HSA-3108214;Reactome: R-HSA-2500257;Reactome: R-HSA-9018519	"Separation of Sister Chromatids";"Cohesin Loading onto Chromatin";"Establishment of Sister Chromatid Cohesion";"Meiotic synapsis";"SUMOylation of DNA damage response and repair proteins";"Resolution of Sister Chromatid Cohesion";"Estrogen-dependent gene expression"
JAMg_model_10882.1	3	Reactome: R-HSA-194840;Reactome: R-HSA-416482;Reactome: R-HSA-193648	"Rho GTPase cycle";"G alpha (12/13) signalling events";"NRAGE signals death through JNK"
JAMg_model_21049.1	1	Reactome: R-HSA-110362	"POLB-Dependent Long Patch Base Excision Repair"
JAMg_model_1290.1	56	Reactome: R-HSA-450408;Reactome: R-HSA-5607761;Reactome: R-HSA-983168;Reactome: R-HSA-4641258;Reactome: R-HSA-5689603;Reactome: R-HSA-2871837;Reactome: R-HSA-2467813;Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-5610785;Reactome: R-HSA-8854050;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-5358346;Reactome: R-HSA-68827;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-5362768;Reactome: R-HSA-69601;Reactome: R-HSA-75815;Reactome: R-HSA-174084;Reactome: R-HSA-4641257;Reactome: R-HSA-69017;Reactome: R-HSA-5607764;Reactome: R-HSA-5689880;Reactome: R-HSA-4608870;Reactome: R-HSA-5687128;Reactome: R-HSA-8939902;Reactome: R-HSA-349425;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-8941858;Reactome: R-HSA-202424;Reactome: R-HSA-174113;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-5610783;Reactome: R-HSA-5610780;Reactome: R-HSA-5658442;Reactome: R-HSA-8852276;Reactome: R-HSA-1236974;Reactome: R-HSA-5676590;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-350562;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684	"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Dectin-1 mediated noncanonical NF-kB signaling";"Antigen processing: Ubiquitination & Proteasome degradation";"Degradation of DVL";"UCH proteinases";"FCERI mediated NF-kB activation";"Separation of Sister Chromatids";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"GLI3 is processed to GLI3R by the proteasome";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"Hedgehog ligand biogenesis";"CDT1 association with the CDC6:ORC:origin complex";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Ubiquitin-dependent degradation of Cyclin D";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN";"CDK-mediated phosphorylation and removal of Cdc6";"CLEC7A (Dectin-1) signaling";"Ub-specific processing proteases";"Asymmetric localization of PCP proteins";"MAPK6/MAPK4 signaling";"Regulation of RUNX2 expression and activity";"Autodegradation of the E3 ubiquitin ligase COP1";"Orc1 removal from chromatin";"Interleukin-1 signaling";"Regulation of RUNX3 expression and activity";"Downstream TCR signaling";"SCF-beta-TrCP mediated degradation of Emi1";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"Degradation of GLI2 by the proteasome";"Degradation of GLI1 by the proteasome";"Regulation of RAS by GAPs";"The role of GTSE1 in G2/M progression after G2 checkpoint";"ER-Phagosome pathway";"NIK-->noncanonical NF-kB signaling";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"Regulation of ornithine decarboxylase (ODC)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state"
JAMg_model_2007.2	1	Reactome: R-HSA-6794361	"Neurexins and neuroligins"
JAMg_model_16720.1	2	Reactome: R-HSA-2142691;Reactome: R-HSA-2142700	"Synthesis of Leukotrienes (LT) and Eoxins (EX)";"Synthesis of Lipoxins (LX)"
JAMg_model_5572.1	1	Reactome: R-HSA-1474228	"Degradation of the extracellular matrix"
JAMg_model_887.1	1	Reactome: R-HSA-216083	"Integrin cell surface interactions"
JAMg_model_8910.3	2	Reactome: R-HSA-2408522;Reactome: R-HSA-379716	"Selenoamino acid metabolism";"Cytosolic tRNA aminoacylation"
JAMg_model_15135.1	2	Reactome: R-HSA-6799198;Reactome: R-HSA-611105	"Complex I biogenesis";"Respiratory electron transport"
JAMg_model_17711.1	7	Reactome: R-HSA-380320;Reactome: R-HSA-380259;Reactome: R-HSA-380270;Reactome: R-HSA-380284;Reactome: R-HSA-5620912;Reactome: R-HSA-2565942;Reactome: R-HSA-8854518	"Recruitment of NuMA to mitotic centrosomes";"Loss of Nlp from mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes";"Loss of proteins required for interphase microtubule organization from the centrosome";"Anchoring of the basal body to the plasma membrane";"Regulation of PLK1 Activity at G2/M Transition";"AURKA Activation by TPX2"
JAMg_model_12920.2	2	Reactome: R-HSA-611105;Reactome: R-HSA-6799198	"Respiratory electron transport";"Complex I biogenesis"
JAMg_model_1169.1	1	Reactome: R-HSA-2672351	"Stimuli-sensing channels"
JAMg_model_13843.1	5	KEGG: 00561+3.2.1.22;KEGG: 00052+3.2.1.22;MetaCyc: PWY-6527;KEGG: 00603+3.2.1.22;KEGG: 00600+3.2.1.22	"Glycerolipid metabolism";"Galactose metabolism";"Stachyose degradation";"Glycosphingolipid biosynthesis - globo and isoglobo series";"Sphingolipid metabolism"
JAMg_model_17489.2	1	Reactome: R-HSA-1660661	"Sphingolipid de novo biosynthesis"
JAMg_model_18024.4	2	Reactome: R-HSA-380320;Reactome: R-HSA-380270	"Recruitment of NuMA to mitotic centrosomes";"Recruitment of mitotic centrosome proteins and complexes"
JAMg_model_4466.1	1	KEGG: 00760+2.3.1.286	"Nicotinate and nicotinamide metabolism"
JAMg_model_5092.1	2	KEGG: 00520+5.4.2.10;MetaCyc: PWY-6749	"Amino sugar and nucleotide sugar metabolism";"CMP-legionaminate biosynthesis I"
JAMg_model_10136.1	1	KEGG: 00970+6.1.1.2	"Aminoacyl-tRNA biosynthesis"
JAMg_model_2084.1	11	Reactome: R-HSA-210744;Reactome: R-HSA-8941856;Reactome: R-HSA-1912408;Reactome: R-HSA-2894862;Reactome: R-HSA-2122947;Reactome: R-HSA-9013508;Reactome: R-HSA-9013695;Reactome: R-HSA-350054;Reactome: R-HSA-2644606;Reactome: R-HSA-2173796;Reactome: R-HSA-72163	"Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells";"RUNX3 regulates NOTCH signaling";"Pre-NOTCH Transcription and Translation";"Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants";"NOTCH1 Intracellular Domain Regulates Transcription";"NOTCH3 Intracellular Domain Regulates Transcription";"NOTCH4 Intracellular Domain Regulates Transcription";"Notch-HLH transcription pathway";"Constitutive Signaling by NOTCH1 PEST Domain Mutants";"SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription";"mRNA Splicing - Major Pathway"
JAMg_model_18671.1	1	Reactome: R-HSA-4551638	"SUMOylation of chromatin organization proteins"
JAMg_model_14959.1	6	Reactome: R-HSA-983712;Reactome: R-HSA-77387;Reactome: R-HSA-917977;Reactome: R-HSA-6798695;Reactome: R-HSA-9639288;Reactome: R-HSA-1222556	"Ion channel transport";"Insulin receptor recycling";"Transferrin endocytosis and recycling";"Neutrophil degranulation";"Amino acids regulate mTORC1";"ROS and RNS production in phagocytes"
JAMg_model_19028.4	1	Reactome: R-HSA-8951664	"Neddylation"
JAMg_model_7576.1	2	KEGG: 00500+3.2.1.28;Reactome: R-HSA-189085	"Starch and sucrose metabolism";"Digestion of dietary carbohydrate"
JAMg_model_18869.2	3	KEGG: 00970+2.1.2.9;KEGG: 00670+2.1.2.9;Reactome: R-HSA-5368286	"Aminoacyl-tRNA biosynthesis";"One carbon pool by folate";"Mitochondrial translation initiation"
JAMg_model_21267.1	1	Reactome: R-HSA-203927	"MicroRNA (miRNA) biogenesis"
JAMg_model_9494.1	1	Reactome: R-HSA-6809371	"Formation of the cornified envelope"
JAMg_model_11737.9	1	Reactome: R-HSA-400253	"Circadian Clock"
JAMg_model_3358.1	16	Reactome: R-HSA-1799339;Reactome: R-HSA-2408557;Reactome: R-HSA-9010553;Reactome: R-HSA-156827;Reactome: R-HSA-975956;Reactome: R-HSA-9633012;Reactome: R-HSA-72649;Reactome: R-HSA-975957;Reactome: R-HSA-156902;Reactome: R-HSA-192823;Reactome: R-HSA-6791226;Reactome: R-HSA-72702;Reactome: R-HSA-72706;Reactome: R-HSA-72695;Reactome: R-HSA-72764;Reactome: R-HSA-72689	"SRP-dependent cotranslational protein targeting to membrane";"Selenocysteine synthesis";"Regulation of expression of SLITs and ROBOs";"L13a-mediated translational silencing of Ceruloplasmin expression";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Response of EIF2AK4 (GCN2) to amino acid deficiency";"Translation initiation complex formation";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)";"Peptide chain elongation";"Viral mRNA Translation";"Major pathway of rRNA processing in the nucleolus and cytosol";"Ribosomal scanning and start codon recognition";"GTP hydrolysis and joining of the 60S ribosomal subunit";"Formation of the ternary complex, and subsequently, the 43S complex";"Eukaryotic Translation Termination";"Formation of a pool of free 40S subunits"
JAMg_model_9858.1	5	Reactome: R-HSA-381183;Reactome: R-HSA-380994;Reactome: R-HSA-9614657;Reactome: R-HSA-1989781;Reactome: R-HSA-2426168	"ATF6 (ATF6-alpha) activates chaperone genes";"ATF4 activates genes in response to endoplasmic reticulum stress";"FOXO-mediated transcription of cell death genes";"PPARA activates gene expression";"Activation of gene expression by SREBF (SREBP)"
JAMg_model_13397.1	7	MetaCyc: PWY-7782;Reactome: R-HSA-1483191;MetaCyc: PWY-3385;Reactome: R-HSA-1483213;MetaCyc: PWY-7886;KEGG: 00564+2.7.1.32+2.7.1.82;MetaCyc: PWY-7818	"Plasmalogen biosynthesis";"Synthesis of PC";"Choline biosynthesis I";"Synthesis of PE";"Cell-surface glycoconjugate-linked phosphocholine biosynthesis";"Glycerophospholipid metabolism";"Type IV lipoteichoic acid biosynthesis (S. pneumoniae)"
JAMg_model_16556.1	5	KEGG: 00520+3.2.1.14;MetaCyc: PWY-7822;MetaCyc: PWY-6902;Reactome: R-HSA-189085;MetaCyc: PWY-6855	"Amino sugar and nucleotide sugar metabolism";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Digestion of dietary carbohydrate";"Chitin degradation I (archaea)"
JAMg_model_7222.1	16	Reactome: R-HSA-1234176;Reactome: R-HSA-180585;Reactome: R-HSA-8951664;Reactome: R-HSA-674695;Reactome: R-HSA-167290;Reactome: R-HSA-6796648;Reactome: R-HSA-167243;Reactome: R-HSA-167200;Reactome: R-HSA-983168;Reactome: R-HSA-167287;Reactome: R-HSA-112382;Reactome: R-HSA-75955;Reactome: R-HSA-167246;Reactome: R-HSA-167238;Reactome: R-HSA-9010553;Reactome: R-HSA-167152	"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Vif-mediated degradation of APOBEC3G";"Neddylation";"RNA Polymerase II Pre-transcription Events";"Pausing and recovery of HIV elongation";"TP53 Regulates Transcription of DNA Repair Genes";"Tat-mediated HIV elongation arrest and recovery";"Formation of HIV-1 elongation complex containing HIV-1 Tat";"Antigen processing: Ubiquitination & Proteasome degradation";"HIV elongation arrest and recovery";"Formation of RNA Pol II elongation complex";"RNA Polymerase II Transcription Elongation";"Tat-mediated elongation of the HIV-1 transcript";"Pausing and recovery of Tat-mediated HIV elongation";"Regulation of expression of SLITs and ROBOs";"Formation of HIV elongation complex in the absence of HIV Tat"
JAMg_model_1147.3	2	Reactome: R-HSA-5218920;Reactome: R-HSA-418990	"VEGFR2 mediated vascular permeability";"Adherens junctions interactions"
JAMg_model_12121.3	6	KEGG: 00564+1.1.5.3;MetaCyc: PWY-6952;Reactome: R-HSA-163560;MetaCyc: PWY-4261;Reactome: R-HSA-1483166;MetaCyc: PWY-6118	"Glycerophospholipid metabolism";"Glycerophosphodiester degradation";"Triglyceride catabolism";"Glycerol degradation I";"Synthesis of PA";"Glycerol-3-phosphate shuttle"
JAMg_model_738.1	3	KEGG: 04660+3.1.3.16;KEGG: 05235+3.1.3.16;KEGG: 04658+3.1.3.16	"T cell receptor signaling pathway";"PD-L1 expression and PD-1 checkpoint pathway in cancer";"Th1 and Th2 cell differentiation"
JAMg_model_20399.1	8	KEGG: 05170+2.7.11.1;KEGG: 05163+2.7.11.1;KEGG: 04714+2.7.11.1;KEGG: 05165+2.7.11.1;KEGG: 04926+2.7.11.1;Reactome: R-HSA-6791226;KEGG: 04150+2.7.11.1;KEGG: 04151+2.7.11.1	"Human immunodeficiency virus 1 infection";"Human cytomegalovirus infection";"Thermogenesis";"Human papillomavirus infection";"Relaxin signaling pathway";"Major pathway of rRNA processing in the nucleolus and cytosol";"mTOR signaling pathway";"PI3K-Akt signaling pathway"
JAMg_model_7830.1	2	KEGG: 04070+2.7.11.13;Reactome: R-HSA-1660661	"Phosphatidylinositol signaling system";"Sphingolipid de novo biosynthesis"
JAMg_model_17402.1	1	Reactome: R-HSA-264876	"Insulin processing"
JAMg_model_12984.1	1	MetaCyc: PWY-7511	"Protein ubiquitination"
JAMg_model_5695.1	2	Reactome: R-HSA-8951664;Reactome: R-HSA-983168	"Neddylation";"Antigen processing: Ubiquitination & Proteasome degradation"
JAMg_model_17283.7	1	Reactome: R-HSA-936837	"Ion transport by P-type ATPases"
JAMg_model_14484.1	5	Reactome: R-HSA-1266695;Reactome: R-HSA-3214858;Reactome: R-HSA-201722;Reactome: R-HSA-8939243;Reactome: R-HSA-3247509	"Interleukin-7 signaling";"RMTs methylate histone arginines";"Formation of the beta-catenin:TCF transactivating complex";"RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known";"Chromatin modifying enzymes"
JAMg_model_4185.3	2	Reactome: R-HSA-168928;Reactome: R-HSA-70350	"DDX58/IFIH1-mediated induction of interferon-alpha/beta";"Fructose catabolism"
JAMg_model_16399.1	4	Reactome: R-HSA-9010553;Reactome: R-HSA-975956;Reactome: R-HSA-72764;Reactome: R-HSA-975957	"Regulation of expression of SLITs and ROBOs";"Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)";"Eukaryotic Translation Termination";"Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)"
JAMg_model_20780.1	57	Reactome: R-HSA-5610783;Reactome: R-HSA-174178;Reactome: R-HSA-8951664;Reactome: R-HSA-1236974;Reactome: R-HSA-8852276;Reactome: R-HSA-5676590;Reactome: R-HSA-5658442;Reactome: R-HSA-5610780;Reactome: R-HSA-187577;Reactome: R-HSA-174154;Reactome: R-HSA-5687128;Reactome: R-HSA-349425;Reactome: R-HSA-8939902;Reactome: R-HSA-8941858;Reactome: R-HSA-68949;Reactome: R-HSA-9020702;Reactome: R-HSA-5668541;Reactome: R-HSA-211733;Reactome: R-HSA-174113;Reactome: R-HSA-202424;Reactome: R-HSA-69481;Reactome: R-HSA-382556;Reactome: R-HSA-1236978;Reactome: R-HSA-8939236;Reactome: R-HSA-5632684;Reactome: R-HSA-350562;Reactome: R-HSA-180534;Reactome: R-HSA-174184;Reactome: R-HSA-8948751;Reactome: R-HSA-195253;Reactome: R-HSA-2871837;Reactome: R-HSA-5689603;Reactome: R-HSA-180585;Reactome: R-HSA-1234176;Reactome: R-HSA-2467813;Reactome: R-HSA-5610785;Reactome: R-HSA-6798695;Reactome: R-HSA-5678895;Reactome: R-HSA-1169091;Reactome: R-HSA-8854050;Reactome: R-HSA-983168;Reactome: R-HSA-5607761;Reactome: R-HSA-450408;Reactome: R-HSA-4641258;Reactome: R-HSA-5607764;Reactome: R-HSA-69017;Reactome: R-HSA-4608870;Reactome: R-HSA-5689880;Reactome: R-HSA-9010553;Reactome: R-HSA-9604323;Reactome: R-HSA-68827;Reactome: R-HSA-5358346;Reactome: R-HSA-75815;Reactome: R-HSA-69601;Reactome: R-HSA-5362768;Reactome: R-HSA-174084;Reactome: R-HSA-4641257	"Degradation of GLI2 by the proteasome";"APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1";"Neddylation";"ER-Phagosome pathway";"The role of GTSE1 in G2/M progression after G2 checkpoint";"NIK-->noncanonical NF-kB signaling";"Regulation of RAS by GAPs";"Degradation of GLI1 by the proteasome";"SCF(Skp2)-mediated degradation of p27/p21";"APC/C:Cdc20 mediated degradation of Securin";"MAPK6/MAPK4 signaling";"Autodegradation of the E3 ubiquitin ligase COP1";"Regulation of RUNX2 expression and activity";"Regulation of RUNX3 expression and activity";"Orc1 removal from chromatin";"Interleukin-1 signaling";"TNFR2 non-canonical NF-kB pathway";"Regulation of activated PAK-2p34 by proteasome mediated degradation";"SCF-beta-TrCP mediated degradation of Emi1";"Downstream TCR signaling";"G2/M Checkpoints";"ABC-family proteins mediated transport";"Cross-presentation of soluble exogenous antigens (endosomes)";"RUNX1 regulates transcription of genes involved in differentiation of HSCs";"Hedgehog 'on' state";"Regulation of ornithine decarboxylase (ODC)";"Vpu mediated degradation of CD4";"Cdc20:Phospho-APC/C mediated degradation of Cyclin A";"Regulation of PTEN stability and activity";"Degradation of beta-catenin by the destruction complex";"FCERI mediated NF-kB activation";"UCH proteinases";"Vif-mediated degradation of APOBEC3G";"Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha";"Separation of Sister Chromatids";"GLI3 is processed to GLI3R by the proteasome";"Neutrophil degranulation";"Defective CFTR causes cystic fibrosis";"Activation of NF-kappaB in B cells";"FBXL7 down-regulates AURKA during mitotic entry and in early mitosis";"Antigen processing: Ubiquitination & Proteasome degradation";"Dectin-1 mediated noncanonical NF-kB signaling";"AUF1 (hnRNP D0) binds and destabilizes mRNA";"Degradation of DVL";"CLEC7A (Dectin-1) signaling";"CDK-mediated phosphorylation and removal of Cdc6";"Asymmetric localization of PCP proteins";"Ub-specific processing proteases";"Regulation of expression of SLITs and ROBOs";"Negative regulation of NOTCH4 signaling";"CDT1 association with the CDC6:ORC:origin complex";"Hedgehog ligand biogenesis";"Ubiquitin-dependent degradation of Cyclin D";"Ubiquitin Mediated Degradation of Phosphorylated Cdc25A";"Hh mutants that don't undergo autocatalytic processing are degraded by ERAD";"Autodegradation of Cdh1 by Cdh1:APC/C";"Degradation of AXIN"
JAMg_model_8092.2	1	Reactome: R-HSA-5620924	"Intraflagellar transport"
JAMg_model_6466.1	26	Reactome: R-HSA-5663220;Reactome: R-HSA-9646399;Reactome: R-HSA-3371497;Reactome: R-HSA-8955332;Reactome: R-HSA-389977;Reactome: R-HSA-6811434;Reactome: R-HSA-5626467;Reactome: R-HSA-2132295;Reactome: R-HSA-983189;Reactome: R-HSA-389960;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276;Reactome: R-HSA-5617833;Reactome: R-HSA-1445148;Reactome: R-HSA-190840;Reactome: R-HSA-9648025;Reactome: R-HSA-380320;Reactome: R-HSA-190861;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436	"RHO GTPases Activate Formins";"Aggrephagy";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"Carboxyterminal post-translational modifications of tubulin";"Post-chaperonin tubulin folding pathway";"COPI-dependent Golgi-to-ER retrograde traffic";"RHO GTPases activate IQGAPs";"MHC class II antigen presentation";"Kinesins";"Formation of tubulin folding intermediates by CCT/TriC";"Mitotic Prometaphase";"HCMV Early Events";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint";"Cilium Assembly";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"EML4 and NUDC in mitotic spindle formation";"Recruitment of NuMA to mitotic centrosomes";"Gap junction assembly";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic"
JAMg_model_6940.1	15	KEGG: 00010+2.7.1.40;MetaCyc: PWY-5484;MetaCyc: PWY-6901;MetaCyc: PWY-1042;MetaCyc: PWY-7383;KEGG: 00230+2.7.1.40;MetaCyc: PWY-7218;MetaCyc: PWY-2221;MetaCyc: PWY-8004;MetaCyc: PWY-6886;MetaCyc: PWY-5723;Reactome: R-HSA-70171;MetaCyc: PWY-7003;KEGG: 00620+2.7.1.40;MetaCyc: PWY-6142	"Glycolysis / Gluconeogenesis";"Glycolysis II (from fructose 6-phosphate)";"Superpathway of glucose and xylose degradation";"Glycolysis IV (plant cytosol)";"Anaerobic energy metabolism (invertebrates, cytosol)";"Purine metabolism";"Photosynthetic 3-hydroxybutanoate biosynthesis (engineered)";"Entner-Doudoroff pathway III (semi-phosphorylative)";"Entner-Doudoroff pathway I";"1-butanol autotrophic biosynthesis (engineered)";"Rubisco shunt";"Glycolysis";"Glycerol degradation to butanol";"Pyruvate metabolism";"Gluconeogenesis II (Methanobacterium thermoautotrophicum)"
JAMg_model_238.1	1	Reactome: R-HSA-3214841	"PKMTs methylate histone lysines"
JAMg_model_16407.1	1	Reactome: R-HSA-209968	"Thyroxine biosynthesis"
JAMg_model_19986.1	2	Reactome: R-HSA-373080;Reactome: R-HSA-3238698	"Class B/2 (Secretin family receptors)";"WNT ligand biogenesis and trafficking"
JAMg_model_1971.1	7	Reactome: R-HSA-749476;Reactome: R-HSA-73980;Reactome: R-HSA-76071;Reactome: R-HSA-76066;Reactome: R-HSA-73780;Reactome: R-HSA-1834949;Reactome: R-HSA-76061	"RNA Polymerase III Abortive And Retractive Initiation";"RNA Polymerase III Transcription Termination";"RNA Polymerase III Transcription Initiation From Type 3 Promoter";"RNA Polymerase III Transcription Initiation From Type 2 Promoter";"RNA Polymerase III Chain Elongation";"Cytosolic sensors of pathogen-associated DNA";"RNA Polymerase III Transcription Initiation From Type 1 Promoter"
JAMg_model_17536.2	3	Reactome: R-HSA-3214847;Reactome: R-HSA-3299685;MetaCyc: PWY-6854	"HATs acetylate histones";"Detoxification of Reactive Oxygen Species";"Ethylene biosynthesis III (microbes)"
JAMg_model_17208.1	1	Reactome: R-HSA-75105	"Fatty acyl-CoA biosynthesis"
JAMg_model_6621.2	25	Reactome: R-HSA-6811434;Reactome: R-HSA-8955332;Reactome: R-HSA-380270;Reactome: R-HSA-9646399;Reactome: R-HSA-5663220;Reactome: R-HSA-3371497;Reactome: R-HSA-2132295;Reactome: R-HSA-5626467;Reactome: R-HSA-437239;Reactome: R-HSA-9619483;Reactome: R-HSA-9609736;Reactome: R-HSA-68877;Reactome: R-HSA-9609690;Reactome: R-HSA-983189;Reactome: R-HSA-2500257;Reactome: R-HSA-6811436;Reactome: R-HSA-9648025;Reactome: R-HSA-190861;Reactome: R-HSA-380320;Reactome: R-HSA-5617833;Reactome: R-HSA-190840;Reactome: R-HSA-1445148;Reactome: R-HSA-2467813;Reactome: R-HSA-6807878;Reactome: R-HSA-8852276	"COPI-dependent Golgi-to-ER retrograde traffic";"Carboxyterminal post-translational modifications of tubulin";"Recruitment of mitotic centrosome proteins and complexes";"Aggrephagy";"RHO GTPases Activate Formins";"HSP90 chaperone cycle for steroid hormone receptors (SHR)";"MHC class II antigen presentation";"RHO GTPases activate IQGAPs";"Recycling pathway of L1";"Activation of AMPK downstream of NMDARs";"Assembly and cell surface presentation of NMDA receptors";"Mitotic Prometaphase";"HCMV Early Events";"Kinesins";"Resolution of Sister Chromatid Cohesion";"COPI-independent Golgi-to-ER retrograde traffic";"EML4 and NUDC in mitotic spindle formation";"Gap junction assembly";"Recruitment of NuMA to mitotic centrosomes";"Cilium Assembly";"Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane";"Translocation of SLC2A4 (GLUT4) to the plasma membrane";"Separation of Sister Chromatids";"COPI-mediated anterograde transport";"The role of GTSE1 in G2/M progression after G2 checkpoint"
JAMg_model_19012.2	2	KEGG: 00563+2.4.1.198;Reactome: R-HSA-162710	"Glycosylphosphatidylinositol (GPI)-anchor biosynthesis";"Synthesis of glycosylphosphatidylinositol (GPI)"
JAMg_model_19551.3	6	MetaCyc: PWY-7426;Reactome: R-HSA-975578;Reactome: R-HSA-4793952;MetaCyc: PWY-7920;KEGG: 00513+2.4.1.143;KEGG: 00510+2.4.1.143	"Complex N-linked glycan biosynthesis (vertebrates)";"Reactions specific to the complex N-glycan synthesis pathway";"Defective MGAT2 causes MGAT2-CDG (CDG-2a)";"Complex N-linked glycan biosynthesis (plants)";"Various types of N-glycan biosynthesis";"N-Glycan biosynthesis"
JAMg_model_628.2	6	MetaCyc: PWY-2221;MetaCyc: PWY-7165;KEGG: 00030+3.1.1.17;KEGG: 00930+3.1.1.17;MetaCyc: PWY-5530;KEGG: 00053+3.1.1.17	"Entner-Doudoroff pathway III (semi-phosphorylative)";"L-ascorbate biosynthesis VI (engineered pathway)";"Pentose phosphate pathway";"Caprolactam degradation";"Sorbitol biosynthesis II";"Ascorbate and aldarate metabolism"
JAMg_model_18340.2	9	MetaCyc: PWY-7883;KEGG: 00513+3.2.1.52;KEGG: 00520+3.2.1.52;KEGG: 00511+3.2.1.52;MetaCyc: PWY-7822;MetaCyc: PWY-6902;KEGG: 00531+3.2.1.52;KEGG: 00604+3.2.1.52;KEGG: 00603+3.2.1.52	"Anhydromuropeptides recycling II";"Various types of N-glycan biosynthesis";"Amino sugar and nucleotide sugar metabolism";"Other glycan degradation";"Chitin degradation III (Serratia)";"Chitin degradation II (Vibrio)";"Glycosaminoglycan degradation";"Glycosphingolipid biosynthesis - ganglio series";"Glycosphingolipid biosynthesis - globo and isoglobo series"
JAMg_model_5848.1	1	Reactome: R-HSA-3214847	"HATs acetylate histones"
JAMg_model_258.1	5	Reactome: R-HSA-5610780;Reactome: R-HSA-5610783;Reactome: R-HSA-5632684;Reactome: R-HSA-5610787;Reactome: R-HSA-5610785	"Degradation of GLI1 by the proteasome";"Degradation of GLI2 by the proteasome";"Hedgehog 'on' state";"Hedgehog 'off' state";"GLI3 is processed to GLI3R by the proteasome"
JAMg_model_2589.1	2	Reactome: R-HSA-8949215;Reactome: R-HSA-8949664	"Mitochondrial calcium ion transport";"Processing of SMDT1"
JAMg_model_619.2	1	Reactome: R-HSA-189085	"Digestion of dietary carbohydrate"
JAMg_model_1018.1	16	Reactome: R-HSA-5603041;Reactome: R-HSA-1810476;Reactome: R-HSA-9020702;Reactome: R-HSA-166058;Reactome: R-HSA-975155;Reactome: R-HSA-1236974;Reactome: R-HSA-209543;Reactome: R-HSA-1257604;Reactome: R-HSA-975871;Reactome: R-HSA-5602498;Reactome: R-HSA-6811558;Reactome: R-HSA-5602680;Reactome: R-HSA-5603037;Reactome: R-HSA-975138;Reactome: R-HSA-3134963;Reactome: R-HSA-975110	"IRAK4 deficiency (TLR2/4)";"RIP-mediated NFkB activation via ZBP1";"Interleukin-1 signaling";"MyD88:MAL(TIRAP) cascade initiated on plasma membrane";"MyD88 dependent cascade initiated on endosome";"ER-Phagosome pathway";"p75NTR recruits signalling complexes";"PIP3 activates AKT signaling";"MyD88 cascade initiated on plasma membrane";"MyD88 deficiency (TLR2/4)";"PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling";"MyD88 deficiency (TLR5)";"IRAK4 deficiency (TLR5)";"TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation";"DEx/H-box helicases activate type I IFN and inflammatory cytokines production";"TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling"
JAMg_model_10407.1	3	Reactome: R-HSA-6811440;Reactome: R-HSA-6811438;Reactome: R-HSA-8876198	"Retrograde transport at the Trans-Golgi-Network";"Intra-Golgi traffic";"RAB GEFs exchange GTP for GDP on RABs"
JAMg_model_17127.1	17	MetaCyc: PWY-5972;Reactome: R-HSA-75876;MetaCyc: PWY-8041;Reactome: R-HSA-5419276;MetaCyc: PWY-7619;KEGG: 00062+2.3.1.199;MetaCyc: PWY-7725;MetaCyc: PWY-7724;MetaCyc: PWY-7601;MetaCyc: PWY-7035;Reactome: R-HSA-5389840;MetaCyc: PWY-6598;MetaCyc: PWY-7036;MetaCyc: PWY-6433;MetaCyc: PWY-7602;Reactome: R-HSA-5368286;MetaCyc: PWY-5080	"Stearate biosynthesis I (animals)";"Synthesis of very long-chain fatty acyl-CoAs";"Ultra-long-chain fatty acid biosynthesis";"Mitochondrial translation termination";"Juniperonate biosynthesis";"Fatty acid elongation";"Arachidonate biosynthesis V (8-detaturase, mammals)";"Icosapentaenoate biosynthesis III (8-desaturase, mammals)";"Arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)";"(9Z)-tricosene biosynthesis";"Mitochondrial translation elongation";"Sciadonate biosynthesis";"Very long chain fatty acid biosynthesis II";"Hydroxylated fatty acid biosynthesis (plants)";"Icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)";"Mitochondrial translation initiation";"Very long chain fatty acid biosynthesis I"