- Data source: http://genomics-pubs.princeton.edu/insect_genomics/data/Oncopeltus_fasciatus.tar - Alignment method: --align_reads together --mate-inner-dist 50 --file_query Oncopeltus_fasciatus_PE_1.fq.gz --file_query2 Oncopeltus_fasciatus_PE_2.fq.gz --library-type fr-unstranded --min-anchor-length 8 --splice-mismatches 0 --min-intron-length 70 --max-intron-length 50000 --min-isoform-fraction 0.15 --max-multihits 20 --min-segment-intron 50 --max-segment-intron 500000 --segment-mismatches 2 --segment-length 20 --num-threads 6 --user_database Ofas.scaffolds.fa --b2-sensitive --tophat_version 2.0.9 --bowtie_version 2.1.0 - Read cleaning method: None - Alignment contatct: Iris Vargas-Jentzsch, University of Cologne