The following files were retrieved from NCBI
https://www.ncbi.nlm.nih.gov/assembly/PTEP

Information about this dataset can be found here: https://i5k.nal.usda.gov/bio_data/836511

Information about the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748
Instruction for running the functional annotation pipeline can be found here: https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html

The file aug3.1.aa was post-processed with agbase/goanna:2.2 (https://hub.docker.com/repository/docker/agbase/goanna) docker container to generate GO functional annotation.
GOanna was run with these options: -a,invertebrates; -f,3; -g,70; -k,9; -q,70; -r,1.2.
The resulting files are:

PTEP.asn
PTEP.gaf.tsv
PTEP.html
PTEP.tsv

The file aug3.1.aa was post-processed with agbase/interproscan:5.54-87 (https://hub.docker.com/repository/docker/agbase/interproscan) docker container to generate GO and pathway functional annotation. The resulting files are:

PTEP_acc_go_counts.txt
PTEP_acc_interpro_counts.txt
PTEP_acc_pathway_counts.txt
PTEP.err
PTEP_gaf.txt
PTEP.gff3
PTEP_go_counts.txt
PTEP_interpro_counts.txt
PTEP.json
PTEP_pathway_counts.txt
PTEP.tsv
PTEP.xml


The file aug3.1.aa was post-processed with agbase/kobas:3.0.3_0 (https://hub.docker.com/repository/docker/agbase/kobas) docker container to generate pathway functional annotation. The resulting files are:

PTEP_KOBAS_acc_pathways.tsv
PTEP_KOBAS_pathways_acc.tsv
PTEP_KOBAS.txt


The GAF output files from InterProScan and GOanna were combined into a single GAF file using agbase/combine_gafs:1.0 (https://hub.docker.com/repository/docker/agbase/combine_gafs)

PTEP_complete.gaf.tsv