Query Sequence
Enter sequence below in FASTA format:

Or load it from disk (load example)
Sequence Input
Dealign input sequences
Clustering and Iteration
MBED-Like Clustering Guide-Tree
MBED-Like Clustering Iteration
Iteration
Number of Combined Iterations
Max Guide Tree Iterations
Max HMM Iterations
Output
Format
Out Order
Basic
Sequence Type
Pairwise Alignment
Full options
DNA weight matrix
Full options
Protein weight matrix
Fast options
Scoring Method
Multiple Alignment
DNA weight matrix
Output
Clustering
Multiple Alignment
Protein weight matrix
Output
Clustering
Output
Format
Out Order