Drosophila kikkawai

Overview

As part of the Drosophila modENCODE project, the Baylor College of Medicine is studying the comparative genomics of eight additional species of Drosophila: biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii.

Please cite the following publication when using the D. kikkawai genome and annotations:
Chen, Z. X., Sturgill, D., Qu, J., et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research, 2014, 24(7), 1209-1223. doi: 10.1101/gr.159384.113


Image Credit: Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Organism Image
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Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS58,096
mRNA14,026
Gene14,026
Contig N50
209023
Scaffold N50
903526
Number Of Genes
14026
Image Credit
Nicolas Gompel. <a href="http://gompel.org/wp-content/gallery/drosophilidae/Drosophila-Sophophora-kikkawai-NCBSisoFline02_plate_small.jpg">View Source.</a> <a href="https://creativecommons.org/licenses/by-nc-sa/3.0/">CC BY-NC-SA 3.0</a>

Assembly Information

Analysis Name Drosophila kikkawai genome assembly Dkik_2.0 (GCF_000224215.1)
Software Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 (NA)
Source SAMN00715127
Date performed 2013-03-04
Materials & Methods Chen, Z. X., Sturgill, D., Qu, J., et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research, 2014, 24(7), 1209-1223. doi: 10.1101/gr.159384.113

Statistics

Assembly Metrics
Contig N50 209023
Scaffold N50 903526
GC Content 42.91