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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeannotation
  2. Agrilus Planipennis Community Manual Annotations

Agrilus planipennis community manual annotations

Summary
Type
Genome annotation
Name
Agrilus planipennis community manual annotations
Description

Agrilus planipennis community annotators performed manual annotation updates on Agrilus planipennis Genome Assembly 1.0 (10.15482/USDA.ADC/1503806(link is external)) via the Apollo software (https://github.com/gmod/apollo(link is external)) at the i5k Workspace@NAL (https://i5k.nal.usda.gov). These annotations were reviewed by the i5k Workspace@NAL and lifted over to assembly Apla_2.0 (GCF_000699045.2(link is external)) via LiftOff v1.6.3 (https://github.com/agshumate/Liftoff(link is external)). Overlaps with RefSeq annotations were computed using gff3_merge (https://github.com/NAL-i5K/GFF3toolkit(link is external)). Fasta sequences were generated using gff3_to_fasta (https://github.com/NAL-i5K/GFF3toolkit(link is external)).
Program, Pipeline, Workflow or Method Name
Manual annotation, LiftOff v1.6.3, GFF3toolkit v2.1.0
Program Version
n/a
Source Name
grilus planipennis genome assembly Apla_2.0 (GCF_000699045.2)
Organism
Agrilus planipennis