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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeannotation
  2. Halyomorpha Halys Annotations Halhal_OGSv1.1

Halyomorpha halys annotations halhal_OGSv1.1

Summary
Type
Genome annotation
Name
Halyomorpha halys annotations halhal_OGSv1.1
Description

This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.1. The OGS is an integration of automatic gene predictions from NCBI's eukaryotic annotation pipeline, NCBI Halyomorpha halys Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/(link is external); ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/795/GCF_000696795.1_Hhal_1.0), with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/(link is external)). Halyomorpha Official Gene Set halhal_OGSv1.1 is a minor update of halhal_OGSv1.0: Alias attributes were added to all manually annotated cathepsin models; six models from contaminated scaffolds were removed; and notes were added to 3 models located on possibly contaminated scaffolds.
Program, Pipeline, Workflow or Method Name
NCBI Eukaryotic Genome Annotation Pipeline; Manual annotation; GFF3toolkit
Program Version
NA
Source Name
Halyomorpha halys genome assembly Hhal_1.0 (GCA_000696795.1)
Data Source URI

https://i5k.nal.usda.gov/data/Arthropoda/halhal-%28Halyomorpha_halys%29…
Organism
Halyomorpha halys
Publication
Sparks ME, Bansal R, Benoit JB, Blackburn MB, Chao H, Chen M, Cheng S, Childers C, Dinh H, Doddapaneni HV, Dugan S, Elpidina EN, Farrow DW, Friedrich M, Gibbs RA, Hall B, Han Y, Hardy RW, Holmes CJ, Hughes DST, Ioannidis P, Cheatle Jarvela AM, Johnston JS, Jones JW, Kronmiller BA, Kung F, Lee SL, Martynov AG, Masterson P, Maumus F, Munoz-Torres M, Murali SC, Murphy TD, Muzny DM, Nelson DR, Oppert B, Panfilio KA, Paula DP, Pick L, Poelchau MF, Qu J, Reding K, Rhoades JH, Rhodes A, Richards S, Richter R, Robertson HM, Rosendale AJ, Tu ZJ, Velamuri AS, Waterhouse RM, Weirauch MT, Wells JT, Werren JH, Worley KC, Zdobnov EM, Gundersen-Rindal DE. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest.. BMC genomics. 2020 Mar 14; 21(1):227.