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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeannotation
  2. Frankliniella Occidentalis Annotations Fraocc_OGSv1.1

Frankliniella occidentalis annotations fraocc_OGSv1.1

Summary
Type
Genome annotation
Name
Frankliniella occidentalis annotations fraocc_OGSv1.1
Description
The Frankliniella occidentalis Official Gene Set fraocc_OGSv1.1 is an update of OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029). OGSv1.0 is an integration of automatic gene predictions from the Baylor College of Medicine's i5k pilot project, with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). OGSv1.1 was updated from OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029) to the coordinates of genome assembly GCA_000697945.4 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000697945.4) using https://github.com/NAL-i5K/coordinates_conversion/.

The full dataset is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1504029

Protein pages for the manual annotations can be accessed at NCBI: https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein_wgs&from_uid=1774659432
Program, Pipeline, Workflow or Method Name
Coordinates conversion
Program Version
3.0.0
Source Name
Frankliniella occidentalis genome assembly Focc_3.0 (GCA_000697945.4_Focc_3.0)
Data Source URI

https://i5k.nal.usda.gov/data/Arthropoda/fraocc-%28Frankliniella_occide…
Organism
Frankliniella occidentalis
Publication
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, Widana Gamage SMK, Hughes DST, Murali SC, Bailey ST, Bejerman NE, Holmes CJ, Jennings EC, Rosendale AJ, Rosselot A, Hervey K, Schneweis BA, Cheng S, Childers C, Simão FA, Dietzgen RG, Chao H, Dinh H, Doddapaneni HV, Dugan S, Han Y, Lee SL, Muzny DM, Qu J, Worley KC, Benoit JB, Friedrich M, Jones JW, Panfilio KA, Park Y, Robertson HM, Smagghe G, Ullman DE, van der Zee M, Van Leeuwen T, Veenstra JA, Waterhouse RM, Weirauch MT, Werren JH, Whitfield AE, Zdobnov EM, Gibbs RA, Richards S. Genome-enabled insights into the biology of thrips as crop pests.. BMC biology. 2020 10 19; 18(1):142.