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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeassembly
  2. Varroa Destructor Genome Assembly Vdes_3.0 (GCF_002443255.2)

Varroa destructor genome assembly Vdes_3.0 (GCF_002443255.2)

Summary
Type
genome assembly
Name
Varroa destructor genome assembly Vdes_3.0 (GCF_002443255.2)
Description

Sequencing platform and version: PacBio RSII; Illumina HiSeq 2500

 

For PacBio RSII data

- Geo location: 26.477 N 127.835 E, Japan:Okinawa, OIST, Sea Side apiary

- Tissues/Life stages included: whole mites, 1207 Varroa destructor mites pooled

- Sex: females

- Strain: Korean

- Other notes: collected on Apis mellifera

 

For Illumina HiSeq 2500

- Geo location: 26.477 N 127.835 E, Japan:Okinawa, OIST, Sea Side apiary

- Tissues/Life stages included: whole mite, one adult reproductive mite

- Sex: male

- Strain: Korean

- Other notes: collected within one Apis mellifera worker red eye pupae capped cell

 

Data source URL:

- ftp://ftp.ncbi.nlm.nih.gov/genomes/Varroa_destructor/

- https://www.ncbi.nlm.nih.gov/biosample/7714100

- https://www.ncbi.nlm.nih.gov/biosample/7714098

- https://www.ncbi.nlm.nih.gov/biosample/7714099
Program, Pipeline, Workflow or Method Name
Newbler v. 2.6; pbjelly v. 15.8.24
Program Version
NA
Data Source Name
BioSample SAMD00093521
Data Source URI
https://www.ncbi.nlm.nih.gov/biosample/SAMD00093521
Organism
Varroa destructor
Publication
Techer MA, Rane RV, Grau ML, Roberts JMK, Sullivan ST, Liachko I, Childers AK, Evans JD, Mikheyev AS. Divergent evolutionary trajectories following speciation in two ectoparasitic honey bee mites.. Communications biology. 2019; 2:357.
Database Cross References
Database Accession
NCBI Assembly GCF_002443255.2