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i5k Workspace@NAL
U.S. Department of Agriculture

Drosophila bipectinata

Summary
Analysis
Assembly Stats
Other Information
Summary
Resource Type
Organism
Genus
Drosophila
Species
bipectinata
Description

Drosophila bipectinata is a species of flies in the family vinegar flies. They are diurnal.

Source: https://eol.org/pages/768951

Genome update. Previously, the i5k Workspace@NAL hosted Drosophila bipectinata genome assembly Dbip_2.0 (GCF_000236285.1), NCBI Drosophila bipectinata Annotation Release 101, and Annotation v0.5.3 of the Drosophila bipectinata assembly using Maker (Baylor College of Medicine) as part of the Drosophila modENCODE project. The assembly and annotations have been updated to the most recent assembly, GCF_018153845.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_018153845.1), and annotations, NCBI Drosophila bipectinata Annotation Release 102 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Drosophila_bipectinata/102/).
Publication
Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Highly contiguous assemblies of 101 drosophilid genomes.. eLife. 2021 07 19; 10.
Organism Image
Image Credit
Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Analysis
NameProgramDate Constructed
Whole Genome Assembly of Drosophila bipectinata provided by the Baylor College of MedicineBaylor College of Medicine genome assembly pipeline Jul 30th, 2013
Annotation v0.5.3 of the Drosophila bipectinata assembly using Maker (Baylor College of Medicine)MakerJul 30th, 2013
Drosophila bipectinata genome assembly Dbip_2.0 (GCF_000236285.1)Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0Mar 4th, 2013
NCBI Drosophila bipectinata Annotation Release 101NCBI Eukaryotic Genome Annotation PipelineJun 17th, 2016
Drosophila bipectinata genome assembly ASM1815384v1 (GCF_018153845.1)Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23Apr 28th, 2021
NCBI Drosophila bipectinata Annotation Release 102NCBI Eukaryotic Genome Annotation PipelineAug 30th, 2021
Functional annotation of NCBI Drosophila bipectinata Annotation Release 102AgBase functional annotation pipelineMar 2nd, 2022
Other Information