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i5k Workspace@NAL
U.S. Department of Agriculture

Drosophila ficusphila

Summary
Analysis
Assembly Stats
Other Information
Summary
Resource Type
Organism
Genus
Drosophila
Species
ficusphila
Description

Drosophila ficusphila is a species of flies in the family vinegar flies. They are diurnal.

Source: https://eol.org/pages/768914

Genome update. Previously, the i5k Workspace@NAL hosted Drosophila ficusphila genome assembly Dfic_2.0 (GCF_000220665.1), NCBI Drosophila ficusphila Annotation Release 101, and Annotation v0.5.3 of the Drosophila ficusphila assembly using Maker (Baylor College of Medicine) as part of the Drosophila modENCODE project. The assembly and annotations have been updated to the most recent assembly, GCF_018152265.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_018152265.1), and annotations, NCBI Drosophila ficusphila Annotation Release 102 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Drosophila_ficusphila/102/).
Publication
Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Highly contiguous assemblies of 101 drosophilid genomes.. eLife. 2021 07 19; 10.
Organism Image
Image Credit
Masayoshi WATADA. View Source. Copyright Masayoshi Watada
Analysis
NameProgramDate Constructed
Whole Genome Assembly of Drosophila ficusphila provided by the Baylor College of MedicineBaylor College of Medicine genome assembly pipelineJul 30th, 2013
Annotation v0.5.3 of the Drosophila ficusphila assembly using Maker (Baylor College of Medicine)MakerFeb 3rd, 2013
Drosophila ficusphila genome assembly Dfic_2.0 (GCF_000220665.1)Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0Mar 4th, 2013
NCBI Drosophila ficusphila Annotation Release 101NCBI Eukaryotic Genome Annotation PipelineJun 17th, 2016
Drosophila ficusphila genome assembly ASM1815226v1 (GCF_018152265.1)Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23Apr 28th, 2021
NCBI Drosophila ficusphila Annotation Release 102NCBI Eukaryotic Genome Annotation PipelineAug 30th, 2021
Functional annotation of NCBI Drosophila ficusphila Annotation Release 102AgBase functional annotation pipelineMar 2nd, 2022
Other Information