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i5k Workspace@NAL
U.S. Department of Agriculture

Centruroides sculpturatus

Summary
Analysis
Assembly Stats
Other Information
Summary
Resource Type
Organism
Genus
Centruroides
Species
sculpturatus
Common Name
Bark scorpion
Description

Provides appropriate phylogenetic sampling across diversity of class Arachnida.

Data were generated by the Baylor College of Medicine's i5k pilot project.

Genome update. Previously, the i5k Workspace@NAL hosted Cscul.scaffolds.50.fa.gz, BCM version 0.5.3 and Funtional annotation of BCM veriosn 0.5.3. The assembly and annotations have updated to the most recent assembly, Centruroides sculpturatus genome assembly Cexi_2.0 (GCF_000671375.1) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000671375.1/), NCBI Centruroides sculpturatus Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Centruroides_sculpturatus/100/), and Functional annotations of NCBI Centruroides sculpturatusa Annotation Release 100 (https://i5k.nal.usda.gov/data/Arthropoda/censcu-%28Centruroides_sculpturatus%29/Cexi_2.0/2.Official%20or%20Primary%20Gene%20Set/).
Publication
Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, Eibner C, Extavour CG, Funch P, Garb J, Gonzalez LB, Gonzalez VL, Griffiths-Jones S, Han Y, Hayashi C, Hilbrant M, Hughes DST, Janssen R, Lee SL, Maeso I, Murali SC, Muzny DM, Nunes da Fonseca R, Paese CLB, Qu J, Ronshaugen M, Schomburg C, Schönauer A, Stollewerk A, Torres-Oliva M, Turetzek N, Vanthournout B, Werren JH, Wolff C, Worley KC, Bucher G, Gibbs RA, Coddington J, Oda H, Stanke M, Ayoub NA, Prpic NM, Flot JF, Posnien N, Richards S, McGregor AP. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.. BMC biology. 2017 07 31; 15(1):62.
Organism Image
Image Credit
Musides. View Source. CC-BY-SA-3.0
Analysis
NameProgramDate Constructed
Whole genome assembly of Centruroides sculpturatusBaylor College of Medicine genome assembly pipelineJan 29th, 2014
Annotation v0.5.3 of the Centruroides sculpturatus assembly using MAKER (Baylor College of Medicine)MAKERJul 10th, 2014
Functional annotation of Centruroides sculpturatus BCM version 0.5.3AgBase functional annotation pipelineJun 22nd, 2022
Centruroides sculpturatus genome assembly Cexi_2.0 (GCF_000671375.1)AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12cDec 12th, 2017
NCBI Centruroides sculpturatus Annotation Release 100NCBI Eukaryotic Genome Annotation PipelineDec 20th, 2017
Functional annotation of NCBI Centruroides sculpturatus Annotation Release 100AgBase functional annotation pipelineNov 13th, 2023
Assembly Stats
Contig N50
5173
Scaffold N50
342549
GC Content
30.59
Other Information
Community Contact
Prashant Sharma, University of Wisconsin
Links
Centruroides sculpturatus @ Baylor College of Medicine
NCBI BioProject
Download Data