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U.S. Department of Agriculture

Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine)

Summary
Summary
Resource Type
Genome Annotation
Name
Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine)
Program, Pipeline, Workflow or Method Name
MAKER
Program Version
2
Data Source
Source Name
: Whole genome assembly of Agrilus planipennis (Baylor College of Medicine)
Organism
A. planipennis (Emerald ash borer)
Publication
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods.. Genome biology. 2020 01 23; 21(1):15.
Description

NOTE: This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses before the official gene set is released. We do not intend to maintain gene identifiers from this gene set.

RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the new genomes.
Cross Reference
Ag Data Commons