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U.S. Department of Agriculture

Tribolium castaneum genome assembly Tcas5.2 (GCF_000002335.3)

Summary
Summary
Resource Type
Genome Assembly
Name
Tribolium castaneum genome assembly Tcas5.2 (GCF_000002335.3)
Program, Pipeline, Workflow or Method Name
AllPaths v. 2008; ATLAS-LINK v. 2014; GapFiller v. 2014; stitch v. 2014
Program Version
NA
Data Source
Source Name
: SAMN02953634
Source URI
: https://www.ncbi.nlm.nih.gov/biosample/SAMN02953634/
Organism
T. castaneum (red flour beetle)
Publication
Shelton JM, Coleman MC, Herndon N, Lu N, Lam ET, Anantharaman T, Sheth P, Brown SJ. Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool.. BMC genomics. 2015 Sep 29; 16:734.
Description

Geographical location of specimen collection:Georgia, USA
Tissues included: whole insect
Sex: mixed eggs
Strain: GA-2
Other notes: GA strain was brother sister inbred for 20 generations
Cross Reference
NCBI Assembly