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i5k Workspace@NAL
U.S. Department of Agriculture

Heliothis virescens annotations GCA_002382865.1_K63_refined_pacbio_genomic 1

Summary
Summary
Resource Type
Genome Annotation
Name
Heliothis virescens annotations GCA_002382865.1_K63_refined_pacbio_genomic 1
Program, Pipeline, Workflow or Method Name
JAMg
Program Version
RC1
Data Source
Source Name
: Heliothis virescens genome assembly K63_refined_pacbio 1 GCA_002382865.1
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/helvir-%28Heliothis_virescens%29/GCA_002382865.1/2.Official%20or%20Primary%20Gene%20Set/
Organism
H. virescens (Tobacco budworm)
Publication
Fritz ML, DeYonke AM, Papanicolaou A, Micinski S, Westbrook J, Gould F. Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices.. Molecular ecology. 2018 01; 27(1):167-181.
Description

Annotations on genome assembly GCA_002382865.1 were created using the Just Annotate My Genome pipeline (JAMg, https://github.com/genomecuration/JAMg). De novo gene predictors GeneMark.HMM-ET and Augustus were chosen as part of the JAMg pipeline. For a complete description of the methods, see https://doi.org/10.1111/mec.14430.

These annotations are also available at NCBI: https://www.ncbi.nlm.nih.gov/datasets/gene/GCA_002382865.1/
Cross Reference
NCBI Gene