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i5k Workspace@NAL
U.S. Department of Agriculture

Hyalella azteca annotations OGSv1.1

Summary
Summary
Resource Type
Genome Annotation
Name
Hyalella azteca annotations OGSv1.1
Program, Pipeline, Workflow or Method Name
remap-gff3 (NA)
Program Version
n/a
Data Source
Source Name
: genome assembly Hazt_2.0
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/hyaazt-%28Hyalella_azteca%29/Hazt_2.0/1.Genome%20Assembly/Hazt_2.0/
Organism
H. azteca (NA)
Publication
Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, Robertson HM, Feyereisen R, Mechler-Hickson A, Mathers N, Lee CE, Colbourne JK, Biales A, Johnston JS, Wellborn GA, Rosendale AJ, Cridge AG, Munoz-Torres MC, Bain PA, Manny AR, Major KM, Lambert FN, Vulpe CD, Tuck P, Blalock BJ, Lin YY, Smith ME, Ochoa-Acuña H, Chen MM, Childers CP, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Gibbs RA, Richards S. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.. Environmental science & technology. 2018 05 15; 52(10):6009-6022.
Description

OGS v1.0 was mapped to genome assembly Hazt_2.0 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000764305.1) using https://github.com/NAL-i5K/coordinates_conversion and subsequently https://github.com/NAL-i5K/remap-gff3, resulting in OGSv1.1

Protein pages for the Official Gene Set can be accessed at NCBI: https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein_wgs&from_u...

The full dataset (OGSv1.0) is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1415995