Cimex lectularius Official Gene Set OGSv1.3
Resource Type | Genome Annotation |
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Name | Cimex lectularius Official Gene Set OGSv1.3 |
Program, Pipeline, Workflow or Method Name | remap-gff3 |
Program Version | NA |
Data Source |
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Organism | |
Publication | Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, Resnik V, Wernig S, Menegazzi P, Wegener C, Peschel N, Hendershot JM, Blenau W, Predel R, Johnston PR, Ioannidis P, Waterhouse RM, Nauen R, Schorn C, Ott MC, Maiwald F, Johnston JS, Gondhalekar AD, Scharf ME, Peterson BF, Raje KR, Hottel BA, Armisén D, Crumière AJJ, Refki PN, Santos ME, Sghaier E, Viala S, Khila A, Ahn SJ, Childers C, Lee CY, Lin H, Hughes DST, Duncan EJ, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Wheeler D, Panfilio KA, Vargas Jentzsch IM, Vargo EL, Booth W, Friedrich M, Weirauch MT, Anderson MAE, Jones JW, Mittapalli O, Zhao C, Zhou JJ, Evans JD, Attardo GM, Robertson HM, Zdobnov EM, Ribeiro JMC, Gibbs RA, Werren JH, Palli SR, Schal C, Richards S. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.. Nature communications. 2016 Feb 02; 7:10165. |
Description | OGS v1.2 was mapped to genome assembly Clec_2.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000648675.2) using https://github.com/NAL-i5K/coordinates_conversion and subsequently https://github.com/NAL-i5K/remap-gff3, resulting in OGSv1.3 The full OGSv1.2 dataset is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1196762 The full datasets for OGSv1.2 and OGSv1.3 are accessible at VEuPathDB: https://vectorbase.org/common/downloads/Legacy%20VectorBase%20Files/Cime... Additional information about OGSv1.3 is accessible at VEuPathDB: https://nov2020-metazoa.ensembl.org/Cimex_lectularius/Info/Annotation/ Official Gene Sets OGSv1.1 and OGSv1.0 were never publicly released. |