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i5k Workspace@NAL
U.S. Department of Agriculture

Cimex lectularius Official Gene Set OGSv1.3

Summary
Summary
Resource Type
Genome Annotation
Name
Cimex lectularius Official Gene Set OGSv1.3
Program, Pipeline, Workflow or Method Name
remap-gff3
Program Version
NA
Data Source
Source Name
: Cimex lectularius genome assembly Clec_2.1 (GCF_000648675.2)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/cimlec-%28Cimex_lectularius%29/Clec_2.1/
Organism
C. lectularius (Bed bug)
Publication
Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, Resnik V, Wernig S, Menegazzi P, Wegener C, Peschel N, Hendershot JM, Blenau W, Predel R, Johnston PR, Ioannidis P, Waterhouse RM, Nauen R, Schorn C, Ott MC, Maiwald F, Johnston JS, Gondhalekar AD, Scharf ME, Peterson BF, Raje KR, Hottel BA, Armisén D, Crumière AJJ, Refki PN, Santos ME, Sghaier E, Viala S, Khila A, Ahn SJ, Childers C, Lee CY, Lin H, Hughes DST, Duncan EJ, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Wheeler D, Panfilio KA, Vargas Jentzsch IM, Vargo EL, Booth W, Friedrich M, Weirauch MT, Anderson MAE, Jones JW, Mittapalli O, Zhao C, Zhou JJ, Evans JD, Attardo GM, Robertson HM, Zdobnov EM, Ribeiro JMC, Gibbs RA, Werren JH, Palli SR, Schal C, Richards S. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.. Nature communications. 2016 Feb 02; 7:10165.
Description

OGS v1.2 was mapped to genome assembly Clec_2.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000648675.2) using https://github.com/NAL-i5K/coordinates_conversion and subsequently https://github.com/NAL-i5K/remap-gff3, resulting in OGSv1.3

The full OGSv1.2 dataset is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1196762

The full datasets for OGSv1.2 and OGSv1.3 are accessible at VEuPathDB: https://vectorbase.org/common/downloads/Legacy%20VectorBase%20Files/Cime...

Additional information about OGSv1.3 is accessible at VEuPathDB: https://nov2020-metazoa.ensembl.org/Cimex_lectularius/Info/Annotation/

Official Gene Sets OGSv1.1 and OGSv1.0 were never publicly released.