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U.S. Department of Agriculture

Frankliniella occidentalis genome assembly Focc_3.0 (GCA_000697945.4_Focc_3.0)

Summary
Summary
Resource Type
Genome Assembly
Name
Frankliniella occidentalis genome assembly Focc_3.0 (GCA_000697945.4_Focc_3.0)
Program, Pipeline, Workflow or Method Name
AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2
Program Version
NA
Data Source
Source Name
: SAMN02303501
Source URI
: https://www.ncbi.nlm.nih.gov/biosample/SAMN02303501/
Organism
F. occidentalis (Western flower thrips)
Publication
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, Widana Gamage SMK, Hughes DST, Murali SC, Bailey ST, Bejerman NE, Holmes CJ, Jennings EC, Rosendale AJ, Rosselot A, Hervey K, Schneweis BA, Cheng S, Childers C, Simão FA, Dietzgen RG, Chao H, Dinh H, Doddapaneni HV, Dugan S, Han Y, Lee SL, Muzny DM, Qu J, Worley KC, Benoit JB, Friedrich M, Jones JW, Panfilio KA, Park Y, Robertson HM, Smagghe G, Ullman DE, van der Zee M, Van Leeuwen T, Veenstra JA, Waterhouse RM, Weirauch MT, Werren JH, Whitfield AE, Zdobnov EM, Gibbs RA, Richards S. Genome-enabled insights into the biology of thrips as crop pests.. BMC biology. 2020 10 19; 18(1):142.
Description

For a general description of the assembly methods, please see https://doi.org/10.1101/382945. 
Cross Reference
NCBI Assembly