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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Content
  2. Ginzburg Et Al. Embryo RNA-Seq

Ginzburg et al. embryo RNA-Seq

Summary
Type
Analysis
Name
Ginzburg et al. embryo RNA-Seq
Description

Sample preparation:

Read alignment (Agustin Baricalla, Universidad Nacional del Noroeste de Buenos Aires):

  • Quality control: FastQC, default parameters
  • Trimming: trimmomatic, special parameters: TRAILING:3 SLIDINGWINDOW:4:25 MINLEN:15 
  • Quality control: FastQC and MultiQC, default parameters
  • Alignment: STAR-aligner
  • Final check: MultiQC, default parameters
Software Name
FastQC, trimomatic, MultiQC, STARaligner
Software Version
NA
Data Source Name
Factors involved in early polarization of the anterior‐posterior axis in the milkweed bug Oncopeltus fasciatus
Organism
Oncopeltus fasciatus