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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Organism
  2. Drosophila Bipectinata

Drosophila bipectinata

Summary
Type
organism
Genus
Drosophila
Species
bipectinata
Genome Browser
JBrowse Viewer for Drosophila bipectinata
Description

Drosophila bipectinata is a species of flies in the family vinegar flies. They are diurnal.

Source: https://eol.org/pages/768951

The Drosophila bipectinata genome assembly DbipHiC1v2 is available for manual annotation via the Genomics Education Partnership (https://gander.wustl.edu/).
Publication
  • Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Highly contiguous assemblies of 101 drosophilid genomes. . eLife. 2021 07 19; 10.
  • Leung W, Torosin N, Cao W, Reed LK, Arrigo C, Elgin SCR, Ellison CE. Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae. G3 (Bethesda, Md.). 2023 Sep 30; 13(10).
Organism Image
Image of Drosophila bipectinata
Image Credit

Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Assembly Stats
Contig N50

18.7 Mb
GC Content

41.5%
Scaffold N50

26.1 Mb
Other Information
Community Contact

Wilson Leung, Washington University in St. Louis
Links
NCBI Bioproject
Download Data
Analyses
Name Program Status
Drosophila bipectinata genome assembly DbipHiC1v2 (GCF_030179905.1) Canu v. 2.1; Flye v. 2.8.1; quickmerge v. 0.3; 3D-DNA v. 180419 Current
NCBI Drosophila bipectinata Annotation Release GCF_030179905.1-RS_2024_12 NCBI Eukaryotic Genome Annotation Pipeline Current
Functional annotation of NCBI Drosophila bipectinata Annotation Release GCF_030179905.1-RS_2024_12 AgBase functional annotation pipeline Current
Functional annotation of NCBI Drosophila bipectinata Annotation Release 102 AgBase functional annotation pipeline Supressed
Drosophila bipectinata genome assembly Dbip_2.0 (GCF_000236285.1) Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_calland_upgrade.pl v. 1.0 Supressed
Annotation v0.5.3 of the Drosophila bipectinata assembly using Maker (Baylor College of Medicine) Maker Supressed
NCBI Drosophila bipectinata Annotation Release 101 NCBI Eukaryotic Genome Annotation Pipeline Supressed
Whole Genome Assembly of Drosophila bipectinata provided by the Baylor College of Medicine Baylor College of Medicine genome assembly pipeline Supressed
NCBI Drosophila bipectinata Annotation Release 102 NCBI Eukaryotic Genome Annotation Pipeline Supressed
Drosophila bipectinata genome assembly ASM1815384v1 (GCF_018153845.1) Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23 Supressed