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Drosophila ficusphila
Summary
| Type |
organism
|
|---|---|
| Genus |
Drosophila
|
| Species |
ficusphila
|
| Description | |
| Publication |
Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Highly contiguous assemblies of 101 drosophilid genomes. . eLife. 2021 07 19; 10.
|
| Organism Image |
|
| Image Credit |
Masayoshi WATADA. View Source. Copyright Masayoshi Watada
|
Assembly Stats
Other Information
Analyses
| Name | Program |
|---|---|
| Drosophila ficusphila genome assembly Dfic_2.0 (GCF_000220665.1) | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 |
| Annotation v0.5.3 of the Drosophila ficusphila assembly using Maker (Baylor College of Medicine) | Maker |
| NCBI Drosophila ficusphila Annotation Release 101 | NCBI Eukaryotic Genome Annotation Pipeline |
| Drosophila ficusphila genome assembly ASM1815226v1 (GCF_018152265.1) | Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23 |
| NCBI Drosophila ficusphila Annotation Release 102 | NCBI Eukaryotic Genome Annotation Pipeline |
| Functional annotation of NCBI Drosophila ficusphila Annotation Release 102 | AgBase functional annotation pipeline |
| Whole Genome Assembly of Drosophila ficusphila provided by the Baylor College of Medicine | Baylor College of Medicine genome assembly pipeline |
Drosophila ficusphila is a species of flies in the family vinegar flies. They are diurnal.
Source: https://eol.org/pages/768914
Genome update. Previously, the i5k Workspace@NAL hosted Drosophila ficusphila genome assembly Dfic_2.0 (GCF_000220665.1), NCBI Drosophila ficusphila Annotation Release 101, and Annotation v0.5.3 of the Drosophila ficusphila assembly using Maker (Baylor College of Medicine) as part of the Drosophila modENCODE project. The assembly and annotations have been updated to the most recent assembly, GCF_018152265.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_018152265.1), and annotations, NCBI Drosophila ficusphila Annotation Release 102 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Drosophila_ficusphila/102/).