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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Organism
  2. Drosophila Kikkawai

Drosophila kikkawai

Summary
Type
organism
Genus
Drosophila
Species
kikkawai
Genome Browser
JBrowse Viewer for Drosophila kikkawai
Description

Drosophila kikkawai (Pomace Fly) is a species of flies in the family vinegar flies. They are diurnal. (Source: https://eol.org/pages/768888)

The Drosophila kikkawai genome assembly DkikHiC1v2 is available for manual annotation via the Genomics Education Partnership (https://gander.wustl.edu/).
Publication
  • Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Highly contiguous assemblies of 101 drosophilid genomes. . eLife. 2021 07 19; 10.
  • Leung W, Torosin N, Cao W, Reed LK, Arrigo C, Elgin SCR, Ellison CE. Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae. G3 (Bethesda, Md.). 2023 Sep 30; 13(10).
Organism Image
Image of Drosophila kikkawai
Image Credit

Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Assembly Stats
Contig N50

27.9 Mb
GC Content

41.0%
Scaffold N50

33.5 Mb
Other Information
Community Contact

Wilson Leung, Washington University in St. Louis
Links
Genomics Education Partnership (GEP) genome browser
NCBI Bioproject
Download Data
Analyses
Name Program Status
Drosophila kikkawai genome assembly DkikHiC1v2 (GCF_030179895.1) Canu v. 2.1; Flye v. 2.8.1; quickmerge v. 0.3; 3D-DNA v. 180419 Current
Functional annotation of NCBI Drosophila kikkawai Annotation Release GCF_030179895.1-RS_2024_12 AgBase functional annotation pipeline Current
NCBI Drosophila kikkawai Annotation Release GCF_030179895.1-RS_2024_12 NCBI Eukaryotic Genome Annotation Pipeline Current
NCBI Drosophila kikkawai Annotation Release 102 NCBI Eukaryotic Genome Annotation Pipeline Supressed
Drosophila kikkawai genome assembly Dkik_2.0 (GCF_000224215.1) Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 Supressed
Annotation v0.5.3 of the Drosophila kikkawai assembly using Maker (Baylor College of Medicine) Maker Supressed
NCBI Drosophila kikkawai Annotation Release 101 NCBI Eukaryotic Genome Annotation Pipeline Supressed
Whole Genome Assembly of Drosophila kikkawai provided by the Baylor College of Medicine Baylor College of Medicine genome assembly pipeline Supressed
Drosophila kikkawai genome assembly ASM1815253v1 (GCF_018152535.1) Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23 Supressed
Functional annotation of NCBI Drosophila kikkawai Annotation Release 102 AgBase functional annotation pipeline Supressed