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Drosophila kikkawai
Summary
| Type |
organism
|
|---|---|
| Genus |
Drosophila
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| Species |
kikkawai
|
| Description | |
| Publication |
Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Highly contiguous assemblies of 101 drosophilid genomes. . eLife. 2021 07 19; 10.
|
| Organism Image |
|
| Image Credit |
Nicolas Gompel. View Source. CC BY-NC-SA 3.0
|
Assembly Stats
Other Information
Analyses
| Name | Program |
|---|---|
| Drosophila kikkawai genome assembly Dkik_2.0 (GCF_000224215.1) | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 |
| Annotation v0.5.3 of the Drosophila kikkawai assembly using Maker (Baylor College of Medicine) | Maker |
| NCBI Drosophila kikkawai Annotation Release 101 | NCBI Eukaryotic Genome Annotation Pipeline |
| Drosophila kikkawai genome assembly ASM1815253v1 (GCF_018152535.1) | Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23 |
| NCBI Drosophila kikkawai Annotation Release 102 | NCBI Eukaryotic Genome Annotation Pipeline |
| Functional annotation of NCBI Drosophila kikkawai Annotation Release 102 | AgBase functional annotation pipeline |
| Whole Genome Assembly of Drosophila kikkawai provided by the Baylor College of Medicine | Baylor College of Medicine genome assembly pipeline |
Drosophila kikkawai (Pomace Fly) is a species of flies in the family vinegar flies. They are diurnal.
Source: https://eol.org/pages/768888
Genome update. Previously, the i5k Workspace@NAL hosted Drosophila kikkawai genome assembly Dkik_2.0 (GCF_000224215.1), NCBI Drosophila kikkawai Annotation Release 101, and Annotation v0.5.3 of the Drosophila kikkawai assembly using Maker (Baylor College of Medicine) as part of the Drosophila modENCODE project. The assembly and annotations have been updated to the most recent assembly, GCF_018152505.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_018152505.1), and annotations, NCBI Drosophila kikkawai Annotation Release 102 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Drosophila_kikkawai/102/).