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Eufriesea mexicana
Summary
| Type |
organism
|
|---|---|
| Genus |
Eufriesea
|
| Species |
mexicana
|
| Description | |
| Publication |
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG, Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. . Science (New York, N.Y.). 2015 Jun 05; 348(6239):1139-43.
|
| Organism Image |
|
| Image Credit |
Cheryl Harleston. View source. CC BY-NC-SA 4.0
|
Assembly Stats
| Contig N50 |
NA
|
|---|---|
| GC Content |
42.47
|
| Scaffold N50 |
351926
|
Other Information
| Community Contact |
Karen M. Kapheim, Utah State University; Hailin Pan, China National GeneBank
|
|---|---|
| Links |
Analyses
| Name | Program |
|---|---|
| NCBI Eufriesea mexicana Annotation Release 100 | NCBI Eukaryotic Genome Annotation Pipeline |
| Eufriesea mexicana genome assembly ASM148370v1 (GCF_001483705.1) | SOAPdenovo |
| Functional annotation of NCBI Eufriesea mexicana Annotation Release 100 | AgBase functional annotation pipeline |
| Eufriesea mexicana Official Gene Set v1.3 | Augustus, GlimmerHMM, SNAP, TBLASTN, GLEAN, LiftOff |
| Eufriesea mexicana Official Gene Set v1.2 | Augustus, GlimmerHMM, SNAP, TBLASTN, GLEAN, coordinates_conversion |
| Eufriesea mexicana Official Gene Set v1.1 | Augustus, GlimmerHMM, SNAP, TBLASTN, GLEAN |
| Eufriesea mexicana genome assembly ASM148370v2 (GCF_001483705.2) | SOAPdenovo |
Eufriesea is a genus of euglossine bees. Like all orchid bees, they are restricted to the Neotropics. All species range from entirely to at least partially metallic (the face and/or tegulae), though much of the body in some species may be brown/black in color and hairy.
Source: https://en.wikipedia.org/wiki/Eufriesea
Please cite the following publication(s) when using this dataset:
Kapheim, Karen M., et al. "Genomic signatures of evolutionary transitions from solitary to group living." Science (2015): aaa4788.
Genome update. Previously, the i5k Workspace@NAL hosted Eufriesea mexicana genome assembly ASM148370v1 (GCF_001483705.1), Eufriesea mexicana v1.1, NCBI Eufriesea mexicana Annotation Release 100 and Functional annotation of NCBI Eufriesea mexicana Annotation Release 100. The assembly and annotations have updated to the most recent assembly, Eufriesea mexicana genome assembly ASM148370v2 (GCF_001483705.2) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_001483705.2/), Eufriesea mexicana v1.3 (https://i5k.nal.usda.gov/data/Arthropoda/eufmex-%28Eufriesea_mexicana%29/ASM148370v2/2.Official%20or%20Primary%20Gene%20Set/eufmex_OGSv1.3//), NCBI Eufriesea mexicana Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Eufriesea_mexicana/100/), and Functional annotation of NCBI Eufriesea mexicana Annotation Release 100 (https://i5k.nal.usda.gov/data/Arthropoda/eufmex-%28Eufriesea_mexicana%29/ASM148370v2/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/).Datasets were provided by BeeBase.