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Apis mellifera

    Summary
    Type
    organism
    Genus
    Apis
    Species
    mellifera
    Common Name
    Honey bee
    Description

    The western honey bee or European honey bee (Apis mellifera) is the most common of the 7–12 species of honey bee worldwide. The genus name Apis is Latin for "bee", and mellifera is the Latin for "honey-bearing", referring to the species's production of honey for the winter. Like all honey bees, the western honey bee is eusocial, creating colonies with a single fertile female (or "queen"), many normally non-reproductive females or "workers," and small proportion of fertile males or "drones." Individual colonies can house tens of thousands of bees. Colony activities are organized by complex communication between individuals, through both pheromones and the dance language. The western honey bee was one of the first domesticated insects, and it is the primary species maintained by beekeepers to this day for both its honey production and pollination activities. With human assistance, the western honey bee now occupies every continent except Antarctica. Because of its wide cultivation, this species is the single most important pollinator for agriculture globally. Honey bees are threatened by pests and diseases, especially the varroa mite and colony collapse disorder. Western honey bees are an important model organism in scientific studies, particularly in the fields of social evolution, learning, and memory; they are also used in studies of pesticide toxicity, to assess non-target impacts of commercial pesticides.

    Description courtesy of Wikipedia(link is external)

    Genome update. Previously, the i5k Workspace@NAL hosted Apis mellifera genome assembly Amel_v4.5 (GCF_000002195.4), Apis mellifera annotations amel_OGSv3.3, Functional annotation of Apis mellifera annotations amel_OGSv3.3 and NCBI Apis mellifera Annotation Release 103. The assembly and annotations have updated to the most recent assembly, Apis mellifera genome assembly Amel_HAv3.1 (GCF_003254395.2) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_003254395.2/(link is external)), Apis mellifera annotations apimel_OGSv3.4 (https://i5k.nal.usda.gov/data/Arthropoda/apimel-%28Apis_mellifera%29/Amel_HAv3.1/2.Official%20or%20Primary%20Gene%20Set/) NCBI Apis mellifera Annotation Release 104 (https://www.ncbi.nlm.nih.gov/refseq/annotation_euk/Apis_mellifera/104/(link is external)), and Functional annotation of NCBI Apis mellifera Annotation Release 104 (https://i5k.nal.usda.gov/data/Arthropoda/apimel-%28Apis_mellifera%29/Amel_HAv3.1/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/).
    Publication
    Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, HGSC production teams, Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RF, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA, Honey Bee Genome Sequencing Consortium. Finding the missing honey bee genes: lessons learned from a genome upgrade. . BMC genomics. 2014 Jan 30; 15:86.
    Organism Image
    Image Credit
    Assembly Stats
    Contig N50
    NA
    GC Content
    28.85
    Scaffold N50
    13219345
    Other Information
    Community Contact
    Chris Elsik, University of Missouri
    Analyses
    Name Program
    NCBI Apis mellifera Annotation Release 103 NCBI Eukaryotic annotation pipeline
    Apis mellifera genome assembly Amel_v4.5 (GCF_000002195.4) Atlas assembly system v. before 2011
    Apis mellifera annotations amel_OGSv3.3 https://doi.org/10.1186/1471-2164-15-86
    Functional annotation of Apis mellifera annotations amel_OGSv3.3 AgBase functional annotation pipeline
    Apis mellifera genome assembly Amel_HAv3.1 (GCF_003254395.2) FALCON v. 0.5.0; Arcs v. 1.0.1; Links v. 1.8.5; BioNano Solve v. 3.1
    NCBI Apis mellifera Annotation Release 104 NCBI Eukaryotic Genome Annotation Pipeline
    Functional annotation of NCBI Apis mellifera Annotation Release 104 AgBase functional annotation pipeline
    Apis mellifera annotations apimel_OGSv3.4 https://doi.org/10.1186/1471-2164-15-86