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Agrilus planipennis
Summary
| Type |
organism
|
|---|---|
| Genus |
Agrilus
|
| Species |
planipennis
|
| Common Name |
Emerald ash borer
|
| Description | |
| Publication |
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods. . Genome biology. 2020 01 23; 21(1):15.
|
| Organism Image |
|
| Image Credit |
Pennsylvania Department of Conservation and Natural Resources - Forestry , Bugwood.org. CCBY license. View Source.
|
Assembly Stats
| Contig N50 |
6314
|
|---|---|
| GC Content |
34.40
|
| Scaffold N50 |
910924
|
Other Information
| Community Contact |
|
|---|---|
| Links |
Analyses
| Name | Program |
|---|---|
| Whole genome assembly of Agrilus planipennis | Baylor College of Medicine genome assembly pipeline |
| Functional annotation of Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine) | AgBase functional annotation pipeline |
| Functional annotation of NCBI Agrilus planipennis Annotation Release 101 | AgBase functional annotation pipeline |
| Agrilus planipennis community manual annotations | Manual annotation, LiftOff v1.6.3, GFF3toolkit v2.1.0 |
| Agrilus planipennis genome assembly Apla_2.0 (GCF_000699045.2) | AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c |
| NCBI Agrilus planipennis Annotation Release 101 | NCBI Eukaryotic Genome Annotation Pipeline |
| Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine) | MAKER |
The emerald ash borer (EAB), Agrilus planipennis Fairmaire, is a relatively new invasive pest that has killed millions of North American ash (Fraxinus spp.) trees in both managed and natural forests of northeastern and Midwestern states since its discovery in 2002.
EAB has invaded 15 states (Illinois, Indiana, Iowa, Kentucky, Maryland, Michigan, Minnesota, Missouri, New York, Ohio, Pennsylvania, Tennessee, Virginia, West Virginia, and Wisconsin) and two Canadian provinces (Ontario and Quebec).
Economic cost of potential EAB damage to ash trees has been recently estimated to reach more than $10 billion with possible expansion of infestation to 25 States in the next 10 years.
Data were generated by the Baylor College of Medicine's i5k pilot project.
View the Baylor College of Medicine's data sharing policy.
Genome update. Previously, the i5k Workspace@NAL hosted Whole genome assembly of Agrilus planipennis, Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine), and Functional annotation of Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine). The assembly and annotations have updated to the most recent assembly, Agrilus planipennis genome assembly Apla_2.0 (GCF_000699045.2)(https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000699045.2/), NCBI Agrilus planipennis Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Agrilus_planipennis/101/), and Functional annotation of NCBI Agrilus planipennis Annotation Release 101 (https://i5k.nal.usda.gov/data/Arthropoda/agrpla-%28Agrilus_planipennis%29/Apla_2.0/2.Official%20or%20Primary%20Gene%20Set/).).