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Frankliniella occidentalis

Overview

Frankliniella occidentalis, the western flower thrips, is a representative of the order Thysanoptera. This insect order is composed exclusively of tiny insects commonly called thrips, and includes more than 7,000 species.

Thrips are considered to be members of the hemipteroid assemblage, which includes the orders Hemiptera, Pscocoptera, and Phthiraptera.

Thysanopterans display an extraordinary amount of diversity with respect to food preference and behaviors. They share, however, some common, but unique, characteristics such as asymmetrical mouthparts composed of a fully developed left mandible and a resorbed right mandible during embryonic development and postembryonic ‘remetaboly’ development, a process that is intermediate between holometaboly and hemimetaboly development.

Frankliniella occidentalis is the most economically-important agronomic pest worldwide within Thysanoptera because it is a direct pest and an efficient vector of plant pathogenic viruses. F. occidentalis is polyphagous, feeding on a wide array of plant species and plant organs.

The insect is haplo-diploid, i.e., haploid males arise from unfertilized eggs, while diploid females develop from fertilized eggs. The short reproductive cycle (~12 days, egg to adult) and high fecundity (~75 eggs per female) of this species contributes to its success as an invasive species.

This species transmits at least five described Tospovirus species (negative strand RNA viruses) to hundreds of food, fiber, and ornamental crops. F. occidentalis efficiently transmits the type member, Tomato spotted wilt virus (TSWV), in a persistent propagative fashion and the virus is passed transstadially from the young larval to pupul to adult developmental stages.

Despite their diversity, biological uniqueness, and economic importance as world-wide crop pests, there are currently no genomics resources available for insects classified in Thysanoptera. Genomics resources for this thrips species would provide tools to identify vector proteins involved in virus acquisition, replication and movement inside thrips tissues, and transmission to plants.

Data were generated by the Baylor College of Medicine's i5k pilot project.

View the Baylor College of Medicine's data sharing policy.

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Image Credit: Whitney Cranshaw, Colorado State Univeristy. CCBY license. View Source

Assembly Information

Analysis Name
Frankliniella occidentalis genome assembly Focc_3.0 (GCA_000697945.4_Focc_3.0)
Software
AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2 (NA)
Source
SAMN02303501
Date performed
2019-12-18
Materials & Methods

For a general description of the assembly methods, please see https://doi.org/10.1101/382945

Assembly Metrics

Contig N50
6158
Scaffold N50
948890
GC Content
54.29

Data Files

NameLast modifiedSize
folder-parentParent Directory
folderBCM-After-Atlas2015-03-19 13:42
folderCurrent Genome Assembly2019-12-18 18:28
folderFocc_3.02019-12-18 18:28
folderGCA_000697945.12017-07-21 20:15