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Frankliniella occidentalis

    Summary
    Type
    organism
    Genus
    Frankliniella
    Species
    occidentalis
    Common Name
    Western flower thrips
    Description

    Frankliniella occidentalis, the western flower thrips, is a representative of the order Thysanoptera. This insect order is composed exclusively of tiny insects commonly called thrips, and includes more than 7,000 species.

    Thrips are considered to be members of the hemipteroid assemblage, which includes the orders Hemiptera, Pscocoptera, and Phthiraptera.

    Thysanopterans display an extraordinary amount of diversity with respect to food preference and behaviors. They share, however, some common, but unique, characteristics such as asymmetrical mouthparts composed of a fully developed left mandible and a resorbed right mandible during embryonic development and postembryonic ‘remetaboly’ development, a process that is intermediate between holometaboly and hemimetaboly development.

    Frankliniella occidentalis is the most economically-important agronomic pest worldwide within Thysanoptera because it is a direct pest and an efficient vector of plant pathogenic viruses. F. occidentalis is polyphagous, feeding on a wide array of plant species and plant organs.

    The insect is haplo-diploid, i.e., haploid males arise from unfertilized eggs, while diploid females develop from fertilized eggs. The short reproductive cycle (~12 days, egg to adult) and high fecundity (~75 eggs per female) of this species contributes to its success as an invasive species.

    This species transmits at least five described Tospovirus species (negative strand RNA viruses) to hundreds of food, fiber, and ornamental crops. F. occidentalis efficiently transmits the type member, Tomato spotted wilt virus (TSWV), in a persistent propagative fashion and the virus is passed transstadially from the young larval to pupul to adult developmental stages.

    Despite their diversity, biological uniqueness, and economic importance as world-wide crop pests, there are currently no genomics resources available for insects classified in Thysanoptera. Genomics resources for this thrips species would provide tools to identify vector proteins involved in virus acquisition, replication and movement inside thrips tissues, and transmission to plants.

    Data were generated by the Baylor College of Medicine&#39s i5k pilot project(link is external).

    View the Baylor College of Medicine&#39s data sharing policy(link is external).

    Genome update. Previously, the i5k Workspace@NAL hosted Whole genome assembly of Frankliniella occidentalis, Frankliniella occidentalis annotations fraocc_OGSv1.1, and Functional annotation of Frankliniella occidentalis fraocc OGSv1.1. The assembly and annotations have updated to the most recent assembly, Frankliniella occidentalis genome assembly Focc_3.1 (GCF_000697945.3) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000697945.3/(link is external)), Frankliniella occidentalis annotations fraocc_OGSv1.2 https://i5k.nal.usda.gov/data/Arthropoda/fraocc-%28Frankliniella_occidentalis%29/Focc_3.1/2.Official%20or%20Primary%20Gene%20Set/), NCBI Frankliniella occidentalis Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Frankliniella_occidentalis/101/(link is external)), and Functional annotation of NCBI Frankliniella occidentalis Annotation Release 101 (https://i5k.nal.usda.gov/data/Arthropoda/fraocc-%28Frankliniella_occidentalis%29/Focc_3.1/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/).
    Publication
    Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, Widana Gamage SMK, Hughes DST, Murali SC, Bailey ST, Bejerman NE, Holmes CJ, Jennings EC, Rosendale AJ, Rosselot A, Hervey K, Schneweis BA, Cheng S, Childers C, Simão FA, Dietzgen RG, Chao H, Dinh H, Doddapaneni HV, Dugan S, Han Y, Lee SL, Muzny DM, Qu J, Worley KC, Benoit JB, Friedrich M, Jones JW, Panfilio KA, Park Y, Robertson HM, Smagghe G, Ullman DE, van der Zee M, Van Leeuwen T, Veenstra JA, Waterhouse RM, Weirauch MT, Werren JH, Whitfield AE, Zdobnov EM, Gibbs RA, Richards S. Genome-enabled insights into the biology of thrips as crop pests. . BMC biology. 2020 10 19; 18(1):142.
    Organism Image
    Image Credit
    Whitney Cranshaw, Colorado State Univeristy. CCBY license.(link is external) View Source(link is external)
    Assembly Stats
    Contig N50
    6158
    GC Content
    54.29
    Scaffold N50
    948890
    Other Information