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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Gene Functional Annotation
  2. Functional Annotation of Latrodectus Hesperus Annotations LHES.Models_GCA_037975125.2

Functional annotation of Latrodectus hesperus annotations LHES.Models_GCA_037975125.2

Summary
Type
Gene functional annotation
Name
Functional annotation of Latrodectus hesperus annotations LHES.Models_GCA_037975125.2
Status
Current
Description

The AgBase functional annotation pipeline provides Gene Ontology annotations via the GOAnna and InterProScan software packages, as well as KEGG annotations via the Pathannotator software, for protein sets hosted by the i5k Workspace@NAL.

A full description of the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748 and https://dx.doi.org/10.17504/protocols.io.dm6gp7n6jgzp/v1 

Instructions for running the functional annotation pipeline can be found here: https://github.com/AgBase/.github

Functional annotation files are available under https://i5k.nal.usda.gov/content/data-downloads
Program, Pipeline, Workflow or Method Name
AgBase Functional Annotation Workflow
Program Version
v1
Data Source Name
LHES.Models_GCA_037975125.2_pep.fa
Data Source URI

https://i5k.nal.usda.gov/data/Arthropoda/lathes-%28Latrodectus_hesperus…
Organism
Latrodectus hesperus
Publication
Saha S, Cooksey AM, Childers AK, Poelchau MF, McCarthy FM. Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes.. Insects. 2021 Aug 19; 12(8).