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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genefunctionalannotation
  2. Functional Annotation of Annotation V0.5.3 of The Homalodisca Vitripennis Assembly Using MAKER (Baylor College of Medicine)

Functional annotation of Annotation v0.5.3 of the Homalodisca vitripennis assembly using MAKER (Baylor College of Medicine)

Summary
Type
Gene functional annotation
Name
Functional annotation of Annotation v0.5.3 of the Homalodisca vitripennis assembly using MAKER (Baylor College of Medicine)
Description

The AgBase functional annotation pipeline provides Gene Ontology annotations via the GOAnna and InterProScan software packages, as well as KEGG annotations via the KOBAS software, for protein sets hosted by the i5k Workspace@NAL.

A full description of the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748(link is external)

Instructions for running the functional annotation pipeline can be found here: https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html(link is external)

Functional annotation files are available under https://i5k.nal.usda.gov/content/data-downloads
Program, Pipeline, Workflow or Method Name
AgBase functional annotation pipeline
Program Version
n/a
Data Source Name
HVIT.faa
Data Source URI
https://doi.org/10.15482/USDA.ADC/1410182
Organism
Homalodisca vitripennis
Publication
Saha S, Cooksey AM, Childers AK, Poelchau MF, McCarthy FM. Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes.. Insects. 2021 Aug 19; 12(8).