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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genefunctionalannotation
  2. Functional Annotation of Melipona Quadrifasciata ASM127656v1 GenBank Annotations

Functional annotation of Melipona quadrifasciata ASM127656v1 GenBank annotations

Summary
Type
Gene functional annotation
Name
Functional annotation of Melipona quadrifasciata ASM127656v1 GenBank annotations
Description

The AgBase functional annotation pipeline provides Gene Ontology annotations via the GOAnna and InterProScan software packages, as well as KEGG annotations via the KOBAS software, for protein sets hosted by the i5k Workspace@NAL.

A full description of the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748

Instructions for running the functional annotation pipeline can be found here: https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html

Functional annotation files are available under https://i5k.nal.usda.gov/content/data-downloads
Program, Pipeline, Workflow or Method Name
AgBase functional annotation pipeline
Program Version
NA
Data Source Name
GCA_001276565.1_ASM127656v1_protein.faa
Data Source URI
https://i5k.nal.usda.gov/data/Arthropoda/melqua-%28Melipona_quadrifasciata%29/GCA_001276565.1/2.Official%20or%20Primary%20Gene%20Set/ASM127656v1_GenBank_annotations%20functional%20annotation/
Organism
Melipona quadrifasciata
Publication
Saha S, Cooksey AM, Childers AK, Poelchau MF, McCarthy FM. Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes.. Insects. 2021 Aug 19; 12(8).