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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeannotation
  2. Manduca Sexta Official Gene Set (OGS 2.0)

Manduca sexta official gene set (OGS 2.0)

Summary
Type
Genome annotation
Name
Manduca sexta official gene set (OGS 2.0)
Description
MAKER 2.25 was used for initial set of gene predictions. These were used for manual annotation using Web Apollo by a community of experts. The resulting manual annotations, the MAKER results, and de novo assemblies of RNA seq data (Trinity and Oases) were used to produce gene predictions using the PASA2 program. (OGS2.0)
Program, Pipeline, Workflow or Method Name
Maker 2.25, manual annotation, Trinity, Oases, PASA2
Program Version
NA
Source Name
Manduca sexta whole genome assembly v1
Organism
Manduca sexta
Publication
Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, Waterhouse RM, Ahn SJ, Almeida FC, An C, Aqrawi P, Bretschneider A, Bryant WB, Bucks S, Chao H, Chevignon G, Christen JM, Clarke DF, Dittmer NT, Ferguson LCF, Garavelou S, Gordon KHJ, Gunaratna RT, Han Y, Hauser F, He Y, Heidel-Fischer H, Hirsh A, Hu Y, Jiang H, Kalra D, Klinner C, König C, Kovar C, Kroll AR, Kuwar SS, Lee SL, Lehman R, Li K, Li Z, Liang H, Lovelace S, Lu Z, Mansfield JH, McCulloch KJ, Mathew T, Morton B, Muzny DM, Neunemann D, Ongeri F, Pauchet Y, Pu LL, Pyrousis I, Rao XJ, Redding A, Roesel C, Sanchez-Gracia A, Schaack S, Shukla A, Tetreau G, Wang Y, Xiong GH, Traut W, Walsh TK, Worley KC, Wu D, Wu W, Wu YQ, Zhang X, Zou Z, Zucker H, Briscoe AD, Burmester T, Clem RJ, Feyereisen R, Grimmelikhuijzen CJP, Hamodrakas SJ, Hansson BS, Huguet E, Jermiin LS, Lan Q, Lehman HK, Lorenzen M, Merzendorfer H, Michalopoulos I, Morton DB, Muthukrishnan S, Oakeshott JG, Palmer W, Park Y, Passarelli AL, Rozas J, Schwartz LM, Smith W, Southgate A, Vilcinskas A, Vogt R, Wang P, Werren J, Yu XQ, Zhou JJ, Brown SJ, Scherer SE, Richards S, Blissard GW. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.. Insect biochemistry and molecular biology. 2016 09; 76:118-147.