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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeannotation
  2. Euglossa Dilemma Annotations V1.0

Euglossa dilemma annotations v1.0

Summary
Type
Genome annotation
Name
Euglossa dilemma annotations v1.0
Description
The annotation is a combination of homology-based approach using blast and exonerate and de novo gene predictions using AUGUSTUS and SNAP. Other methods include: SNAP,tblastn-exonerate
For more information, or to cite, please see the following publication:
The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma
Philipp Brand, Nicholas Saleh, Hailin Pan, Cai Li, Karen M. Kapheim and Santiago R. Ramírez
G3: Genes, Genomes, Genetics Early online July 12, 2017; https://doi.org/10.1534/g3.117.043687
Program, Pipeline, Workflow or Method Name
Augustus 3.2.2, exonerate v2.42.1, tblastn, SNAP
Program Version
NA
Source Name
Euglossa dilemma genome assembly Edil_v1.0 (GCA_002201625.1/NIGJ01)
Data Source URI

https://i5k.nal.usda.gov/data/Arthropoda/eugdil-%28Euglossa_dilemma%29/…
Organism
Euglossa dilemma
Publication
Brand P, Saleh N, Pan H, Li C, Kapheim KM, Ramírez SR. The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma.. G3 (Bethesda, Md.). 2017 09 07; 7(9):2891-2898.