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U.S. Department of Agriculture
  1. Genomeassembly
  2. Whole Genome Assembly of Drosophila Rhopaloa Provided By The Baylor College of Medicine

Whole Genome Assembly of Drosophila rhopaloa provided by the Baylor College of Medicine

Summary
Type
genome assembly
Name
Whole Genome Assembly of Drosophila rhopaloa provided by the Baylor College of Medicine
Description

From http://www.ncbi.nlm.nih.gov/nuccore/AFPP00000000/:

This is an upgrade of the Drho_1.0 assembly using illumina reads to fix indels and other improvements using BWA, samtools etc. Not a traditional assembler.

Assembly Method:

Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0

Assembly Name: Drho_2.0

Genome Coverage: 214.5x

Sequencing Technology: 454; Illumina GAIIx
Program, Pipeline, Workflow or Method Name
Baylor College of Medicine genome assembly pipeline
Program Version
n/a
Data Source Name
SAMN00715129
Data Source URI
https://www.ncbi.nlm.nih.gov/biosample/SAMN00715129/
Organism
Drosophila rhopaloa
Database Cross References
Database Accession
Ag Data Commons 1523467