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Drosophila rhopaloa
Summary
| Type |
organism
|
|---|---|
| Genus |
Drosophila
|
| Species |
rhopaloa
|
| Description | |
| Organism Image |
|
| Image Credit |
Nicolas Gompel. View Source. CC BY-NC-SA 3.0
|
Assembly Stats
| Contig N50 |
19300
|
|---|---|
| GC Content |
39.21
|
| Scaffold N50 |
44904
|
Other Information
Analyses
| Name | Program |
|---|---|
| Drosophila rhopaloa genome assembly ASM1815211v1 (GCF_018152115.1) | Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23 |
| NCBI Drosophila rhopaloa Annotation Release 102 | NCBI Eukaryotic Genome Annotation Pipeline |
| Drosophila rhopaloa genome assembly Drho_2.0 (GCF_000236305.1) | Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 |
| Annotation v0.5.3 of the Drosophila rhopaloa assembly using Maker (Baylor College of Medicine) | Maker |
| NCBI Drosophila rhopaloa Annotation Release 101 | NCBI Eukaryotic Genome Annotation Pipeline |
| Functional annotation of NCBI Drosophila rhopaloa Annotation Release 102 | AgBase functional annotation pipeline |
| Whole Genome Assembly of Drosophila rhopaloa provided by the Baylor College of Medicine | Baylor College of Medicine genome assembly pipeline |
Drosophila rhopaloa is a species of flies in the family vinegar flies. They are diurnal.
Source:https://eol.org/pages/768791
Genome update. Previously, the i5k Workspace@NAL hosted Drosophila rhopaloa genome assembly Drho_2.0 (GCF_000236305.1), NCBI Drosophila rhopaloa Annotation Release 101, and Annotation v0.5.3 of the Drosophila rhopaloa assembly using Maker (Baylor College of Medicine) as part of the Drosophila modENCODE project. The assembly and annotations have been updated to the most recent assembly, GCF_018152115.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_018152115.1), and annotations, NCBI Drosophila rhopaloa Annotation Release 102 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Drosophila_rhopaloa/102/).