Halyomorpha halys | i5k Workspace@NAL

i5k Workspace@NAL

U.S. Department of Agriculture

Summary

Type	organism
Genus	Halyomorpha
Species	halys
Common Name	Brown marmorated stink bug
Description	New pest spreading from Mid-Atlantic region, no natural predators in North America, and limited pesticide options, highly destructive to fruit/vegetable crops and a nuisance within residences. Only three published papers in Pubmed, dating from 2007. Genetic sequence would help with rational pesticide design (if it is done like what is done for rational drug design). The public is highly fed up with this insect (it is catching up with bed bugs) and would welcome research into stopping this. Genetic material should be easily obtained. Data were generated by the Baylor College of Medicine's i5k pilot project. View the Baylor College of Medicine's data sharing policy.
Publication	Sparks ME, Bansal R, Benoit JB, Blackburn MB, Chao H, Chen M, Cheng S, Childers C, Dinh H, Doddapaneni HV, Dugan S, Elpidina EN, Farrow DW, Friedrich M, Gibbs RA, Hall B, Han Y, Hardy RW, Holmes CJ, Hughes DST, Ioannidis P, Cheatle Jarvela AM, Johnston JS, Jones JW, Kronmiller BA, Kung F, Lee SL, Martynov AG, Masterson P, Maumus F, Munoz-Torres M, Murali SC, Murphy TD, Muzny DM, Nelson DR, Oppert B, Panfilio KA, Paula DP, Pick L, Poelchau MF, Qu J, Reding K, Rhoades JH, Rhodes A, Richards S, Richter R, Robertson HM, Rosendale AJ, Tu ZJ, Velamuri AS, Waterhouse RM, Weirauch MT, Wells JT, Werren JH, Worley KC, Zdobnov EM, Gundersen-Rindal DE. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. . BMC genomics. 2020 Mar 14; 21(1):227. Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods. . Genome biology. 2020 01 23; 21(1):15.
Organism Image
Image Credit	David R. Lance, USDA APHIS PPQ. CCBY license. View Source.

Assembly Stats

Contig N50	17705
GC Content	31.12
Scaffold N50	802423

Other Information

Community Contact	Michael Sparks, USDA-ARS
Links	Halyomorpha halys @ Baylor College of Medicine NCBI BioProject Download Data

Analyses

Name	Program
Halyomorpha halys NCBI Annotation Release 100	NCBI Eukaryotic Genome Annotation Pipeline
Halyomorpha halys genome assembly Hhal_1.1 (GCA_000696795.3)	AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2, contamination removal
BCM annotation of the Halyomorpha halys assembly using Maker and additional analyses	MAKER
Halyomorpha halys annotations halhal_OGSv1.2	NCBI Eukaryotic Genome Annotation Pipeline; Manual annotation; GFF3toolkit; coordinates_conversion
Halyomorpha halys annotations OGSv1.0	MAKER2, manual annotation, GFF3toolkit
Halyomorpha halys annotations halhal_OGSv1.1	NCBI Eukaryotic Genome Annotation Pipeline; Manual annotation; GFF3toolkit
Functional annotation of Halyomorpha halys halhal OGSv1.2	AgBase functional annotation pipeline
Whole genome assembly of Halyomorpha halys	Baylor College of Medicine genome assembly pipeline