Orussus abietinus
Overview
![]() Data were generated by the Baylor College of Medicine's i5k pilot project. View the Baylor College of Medicine's data sharing policy. Community contact: Image Credit: Copyright Oliver Niehuis
Organism Image
![]() Feature Summary
The following features are currently present for this organism
Contig N50
34151 Scaffold N50
1806487 Number Of Genes
10959 Community Contact
Community Contact: Oliver Niehuis|o.niehuis.zfmk@uni-bonn.de Image Credit
Copyright Oliver Niehuis |
Assembly Information
Analysis Name | Whole genome assembly of Orussus abietinus |
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Software | Baylor College of Medicine genome assembly pipeline (NA) |
Source | Orussus abietinus Oabi_FINAL.genome.fa |
Date performed | 2013-06-10 |
Materials & Methods | Sequence generation for assembly. For this project we are generating fairly high coverage in a number of different insert sized libraries. The assembly strategy is based around a seed allpaths assembly (the Broad Allpaths assembler) followed by seed assembly improvement using homegrown tools, Atlas-link and Atlas-GapFill, which can significantly improve the results. Thus we generate sequence data to enable the Allpaths assembly. As of Nov 2011 this is: - 40X genome coverage in 180bp insert library (100bp reads forward and reverse); and 40X 3kb insert data. To enable better scaffolding and local gap filling we additionally generate 500bp, 1kb, 2kb, and 8kb insert sizes at > 20X coverage. Source: Baylor College of Medicine i5K Project Summary |
Statistics
Assembly Metrics | |
Contig N50 | 34151 |
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Scaffold N50 | 1806487 |
GC Content | 43.21 |
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