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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeannotation
  2. Orussus Abietinus Annotations OGS V1.0

Orussus abietinus annotations OGS v1.0

Summary
Type
Genome annotation
Name
Orussus abietinus annotations OGS v1.0
Description
OGS construction by integrating the models of manual curations from Apollo and OABI-v0.5.3-Models * Quality control of manually curated models from Apollo. See https://github.com/NAL-i5K/I5KNAL_OGS/wiki/QC-phase for a description of the process. * Merge of quality-controlled, manually curated models from Apollo and gene set OABI-v0.5.3-Models (provided by Dan Hughes, Baylor College of Medicine) to create ORUABI_OGSv1.0. See https://github.com/NAL-i5K/I5KNAL_OGS/wiki/Merge-phase for a description of the process. * Post-processing of ORUABI_OGSv1.0: * removed 16 models from OABI-v0.5.3-Models that should have been replaced by Apollo models * removed 9 models from OABI-v0.5.3-Models that had truncated protein sequences
Program, Pipeline, Workflow or Method Name
gff3_merge (https://github.com/NAL-i5k/GFF3toolkit)
Program Version
NA
Source Name
Whole genome assembly of Orussus abietinus
Data Source URI

https://i5k.nal.usda.gov/data/Arthropoda/oruabi-%28Orussus_abietinus%29…
Organism
Orussus abietinus
Publication
Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dowling D, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grath S, Grimmelikhuijzen CJP, Große-Wilde E, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jacquin-Joly E, Jennings EC, Jones JW, Klasberg S, Lee SL, Lesný P, Lovegrove M, Martin S, Martynov AG, Mayer C, Montagné N, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Parisot N, Pauli T, Peters RS, Petersen M, Pick C, Persyn E, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, von Reumont BM, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Vedder L, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.. Genome biology and evolution. 2020 07 01; 12(7):1099-1188.