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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Organism
  2. Orussus Abietinus

Orussus abietinus

Summary
Type
organism
Genus
Orussus
Species
abietinus
Common Name
Parasitic Wood Wasp
Genome Browser
JBrowse Viewer for Orussus abietinus
Description
Representative of the wasp (Hymenoptera) family Orussidae: the parasitic wood wasp Orussus abietinus parasitizes wood-boring beetle larvae and exhibits numerous remarkable characteristics, such as an ovipositor that internally loops through the abdomen and thorax and eggs longer than the body size of the adult female. What makes parasitic wood wasps even more interesting, however, is the fact that they are the only lineage of parasitic wasps that primarily do not possess a wasp waist. In fact, orussids are thought to be the sister lineage of the tremendously successful and species rich Apocrita. The latter include all primarily parasitic wasps with wasp waist and all ants and bees. Orussids are critical for understanding the evolution of a parasitoid life history and the associated adaptations at the genomic level.

Data were generated by the Baylor College of Medicine's i5k pilot project.

View the Baylor College of Medicine's data sharing policy.

Genome update. Previously, the i5k Workspace@NAL hosted Whole genome assembly of Orussus abietinus, Orussus abietinus annotations OGSv1.0, and Functional annotation of Orussus abietinus oruabi OGS v1.0. The assembly and annotations have updated to the most recent assembly, Orussus abietinus genome assembly Oabi_2.0 (GCF_000612105.2) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000612105.2/), NCBI Orussus abietinus Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Orussus_abietinus/101/), and Functional annotation of NCBI Orussus abietinus Annotation Release 101 (https://i5k.nal.usda.gov/data/Arthropoda/oruabi-%28Orussus_abietinus%29/Oabi_2.0/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/).
Publication
  • Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods. . Genome biology. 2020 01 23; 21(1):15.
  • Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dowling D, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grath S, Grimmelikhuijzen CJP, Große-Wilde E, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jacquin-Joly E, Jennings EC, Jones JW, Klasberg S, Lee SL, Lesný P, Lovegrove M, Martin S, Martynov AG, Mayer C, Montagné N, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Parisot N, Pauli T, Peters RS, Petersen M, Pick C, Persyn E, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, von Reumont BM, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Vedder L, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. . Genome biology and evolution. 2020 07 01; 12(7):1099-1188.
Organism Image
Image Credit
Copyright Oliver Niehuis
Assembly Stats
Contig N50
NA
GC Content
42.07
Scaffold N50
612083
Other Information
Community Contact
The i5k Workspace@NAL
Links
Orussus abietinus @ Baylor College of Medicine
NCBI BioProject
Download Data
Analyses
Name Program
Orussus abietinus genome assembly Oabi_2.0 (GCF_000612105.2) AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c
NCBI Orussus abietinus Annotation Release 101 NCBI Eukaryotic annotation pipeline
Orussus abietinus annotations OGSv1.2 remap-gff3
Functional annotation of Orussus abietinus oruabi OGS v1.0 AgBase functional annotation pipeline
Whole genome assembly of Orussus abietinus Baylor College of Medicine genome assembly pipeline
Orussus abietinus annotations OGS v1.0 gff3_merge (https://github.com/NAL-i5k/GFF3toolkit)
Functional annotation of NCBI Orussus abietinus Annotation Release 101 AgBase functional annotation pipeline
BCM annotation of the Orussus abietinus assembly using Maker and additional analyses MAKER