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i5k Workspace@NAL
U.S. Department of Agriculture

Orussus abietinus annotations OGS v1.0

Summary
Summary
Resource Type
Genome Annotation
Name
Orussus abietinus annotations OGS v1.0
Program, Pipeline, Workflow or Method Name
gff3_merge (https://github.com/NAL-i5k/GFF3toolkit)
Program Version
NA
Data Source
Source Name
: Whole genome assembly of Orussus abietinus
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/oruabi-%28Orussus_abietinus%29/BCM-After-Atlas/2.Official%20or%20Primary%20Gene%20Set/
Organism
O. abietinus (Parasitic Wood Wasp)
Publication
Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dowling D, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grath S, Grimmelikhuijzen CJP, Große-Wilde E, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jacquin-Joly E, Jennings EC, Jones JW, Klasberg S, Lee SL, Lesný P, Lovegrove M, Martin S, Martynov AG, Mayer C, Montagné N, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Parisot N, Pauli T, Peters RS, Petersen M, Pick C, Persyn E, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, von Reumont BM, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Vedder L, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.. Genome biology and evolution. 2020 07 01; 12(7):1099-1188.
Description

OGS construction by integrating the models of manual curations from Apollo and OABI-v0.5.3-Models
* Quality control of manually curated models from Apollo. See https://github.com/NAL-i5K/I5KNAL_OGS/wiki/QC-phase for a description of the process.
* Merge of quality-controlled, manually curated models from Apollo and gene set OABI-v0.5.3-Models (provided by Dan Hughes, Baylor College of Medicine) to create ORUABI_OGSv1.0. See https://github.com/NAL-i5K/I5KNAL_OGS/wiki/Merge-phase for a description of the process.
* Post-processing of ORUABI_OGSv1.0:
* removed 16 models from OABI-v0.5.3-Models that should have been replaced by Apollo models
* removed 9 models from OABI-v0.5.3-Models that had truncated protein sequences