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i5k Workspace@NAL
U.S. Department of Agriculture

Drosophila eugracilis

Summary
Analysis
Assembly Stats
Other Information
Summary
Resource Type
Organism
Genus
Drosophila
Species
eugracilis
Description

Drosophila eugracilis is a species of flies in the family vinegar flies. They are diurnal.

Source: https://eol.org/pages/768916

Genome update. Previously, the i5k Workspace@NAL hosted Drosophila eugracilis genome assembly Deug_2.0 (GCF_000236325.1), NCBI Drosophila eugracilis Annotation Release 101, and Annotation v0.5.3 of the Drosophila eugracilis assembly using Maker (Baylor College of Medicine) as part of the Drosophila modENCODE project. The assembly and annotations have been updated to the most recent assembly, GCF_018153835.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_018153835.1), and annotations, NCBI Drosophila eugracilis Annotation Release 102 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Drosophila_eugracilis/102/).
Organism Image
Image Credit
Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Analysis
NameProgramDate Constructed
Whole Genome Assembly of Drosophila eugracilis provided by the Baylor College of MedicineBaylor College of Medicine genome assembly pipelineJul 30th, 2013
Annotation v0.5.3 of the Drosophila eugracilis assembly using Maker (Baylor College of Medicine)MakerFeb 3rd, 2014
Drosophila eugracilis genome assembly Deug_2.0 (GCF_000236325.1)Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0Mar 4th, 2013
NCBI Drosophila eugracilis Annotation Release 101NCBI Eukaryotic Genome Annotation PipelineJun 17th, 2016
Drosophila eugracilis genome assembly ASM1815383v1 (GCF_018153835.1)Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23Apr 28th, 2021
NCBI Drosophila eugracilis Annotation Release 102NCBI Eukaryotic Genome Annotation PipelineMay 27th, 2021
Functional annotation of Drosophila eugracilis Annotation Release 102AgBase functional annotation pipelineOct 8th, 2021
Assembly Stats
Contig N50
2,288,481
GC Content
39.61
Other Information