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Agrilus planipennis

Summary
Resource Type
Organism
Genus
Agrilus
Species
planipennis
Common Name
Emerald ash borer
Description

The emerald ash borer (EAB), Agrilus planipennis Fairmaire, is a relatively new invasive pest that has killed millions of North American ash (Fraxinus spp.) trees in both managed and natural forests of northeastern and Midwestern states since its discovery in 2002.

EAB has invaded 15 states (Illinois, Indiana, Iowa, Kentucky, Maryland, Michigan, Minnesota, Missouri, New York, Ohio, Pennsylvania, Tennessee, Virginia, West Virginia, and Wisconsin) and two Canadian provinces (Ontario and Quebec).

Economic cost of potential EAB damage to ash trees has been recently estimated to reach more than $10 billion with possible expansion of infestation to 25 States in the next 10 years.

Data were generated by the Baylor College of Medicine's i5k pilot project.

View the Baylor College of Medicine's data sharing policy.

Genome update. Previously, the i5k Workspace@NAL hosted Whole genome assembly of Agrilus planipennis, Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine), and Functional annotation of Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine). The assembly and annotations have updated to the most recent assembly, Agrilus planipennis genome assembly Apla_2.0 (GCF_000699045.2)(https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000699045.2/), NCBI Agrilus planipennis Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Agrilus_planipennis/101/), and Functional annotation of NCBI Agrilus planipennis Annotation Release 101 (https://i5k.nal.usda.gov/data/Arthropoda/agrpla-%28Agrilus_planipennis%29/Apla_2.0/2.Official%20or%20Primary%20Gene%20Set/).).

Publication
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods.. Genome biology. 2020 01 23; 21(1):15.
Organism Image
Image Credit
Pennsylvania Department of Conservation and Natural Resources - Forestry , Bugwood.org. CCBY license. View Source.
Analysis
NameProgramDate Constructed
Whole genome assembly of Agrilus planipennisBaylor College of Medicine genome assembly pipelineJan 29th, 2014
Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine)MAKERJul 10th, 2014
Functional annotation of Annotation v0.5.3 of the Agrilus planipennis assembly using MAKER (Baylor College of Medicine)AgBase functional annotation pipelineSep 30th, 2020
Agrilus planipennis genome assembly Apla_2.0 (GCF_000699045.2)AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12cJan 3rd, 2018
NCBI Agrilus planipennis Annotation Release 101NCBI Eukaryotic Genome Annotation PipelineJul 30th, 2018
Functional annotation of NCBI Agrilus planipennis Annotation Release 101AgBase functional annotation pipelineJan 8th, 2024
Agrilus planipennis community manual annotationsManual annotation, LiftOff v1.6.3, GFF3toolkit v2.1.0Jan 26th, 2024
Assembly Stats
Contig N50
6314
Scaffold N50
910924
GC Content
34.40
Other Information
Community Contact
  • Jian Duan, USDA-ARS
  • Kristen Kuhn, USDA-ARS
Links