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U.S. Department of Agriculture

Whole Genome Assembly of Drosophila rhopaloa provided by the Baylor College of Medicine

Summary
Summary
Resource Type
Genome Assembly
Name
Whole Genome Assembly of Drosophila rhopaloa provided by the Baylor College of Medicine
Program, Pipeline, Workflow or Method Name
Baylor College of Medicine genome assembly pipeline
Program Version
n/a
Data Source
Source Name
: SAMN00715129
Source URI
: https://www.ncbi.nlm.nih.gov/biosample/SAMN00715129/
Organism
D. rhopaloa (D. rhopaloa)
Description

From http://www.ncbi.nlm.nih.gov/nuccore/AFPP00000000/:

This is an upgrade of the Drho_1.0 assembly using illumina reads to fix indels and other improvements using BWA, samtools etc. Not a traditional assembler.

Assembly Method:

Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0

Assembly Name: Drho_2.0

Genome Coverage: 214.5x

Sequencing Technology: 454; Illumina GAIIx
Cross Reference
Ag Data Commons